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  • C07K—PEPTIDES
  • C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
  • C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
  • C07K16/28—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
  • C07K16/2896—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against molecules with a "CD"-designation, not provided for elsewhere
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  • C07K—PEPTIDES
  • C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
  • C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
  • C07K16/28—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
  • C07K16/30—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants from tumour cells
  • C07K16/3053—Skin, nerves, brain
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  • C12P21/00—Preparation of peptides or proteins
  • C12P21/005—Glycopeptides, glycoproteins
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  • C07K2317/00—Immunoglobulins specific features
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  • C07K2317/14—Specific host cells or culture conditions, e.g. components, pH or temperature
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  • C07K2317/00—Immunoglobulins specific features
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  • C07K2317/24—Immunoglobulins specific features characterized by taxonomic origin containing regions, domains or residues from different species, e.g. chimeric, humanized or veneered
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  • C07K2317/00—Immunoglobulins specific features
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  • C07K2317/41—Glycosylation, sialylation, or fucosylation
• • C—CHEMISTRY; METALLURGY
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  • C07K2317/00—Immunoglobulins specific features
  • C07K2317/70—Immunoglobulins specific features characterized by effect upon binding to a cell or to an antigen
  • C07K2317/73—Inducing cell death, e.g. apoptosis, necrosis or inhibition of cell proliferation
  • C07K2317/732—Antibody-dependent cellular cytotoxicity [ADCC]
• • C—CHEMISTRY; METALLURGY
  • C07—ORGANIC CHEMISTRY
  • C07K—PEPTIDES
  • C07K2319/00—Fusion polypeptide
  • C07K2319/30—Non-immunoglobulin-derived peptide or protein having an immunoglobulin constant or Fc region, or a fragment thereof, attached thereto
• • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
  • Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
  • Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
  • Y10S977/00—Nanotechnology
  • Y10S977/70—Nanostructure
  • Y10S977/788—Of specified organic or carbon-based composition
  • Y10S977/802—Virus-based particle

Definitions

• the present invention relates to the field of glycosylation engineering of proteins. More particularly, the present invention relates to glycosylation engineering to generate proteins with improved therapeutic properties, including antibodies with enhanced antibody-dependent cellular cytotoxicity.
• Glycoproteins mediate many essential functions in human beings, other eukaryotic organisms, and some prokaryotes, including catalysis, signalling, cell-cell communication, and molecular recognition and association. They make up the majority of non-cytosolic proteins in eukaryotic organisms. Lis and Sharon, 1993, Eur. J. Biochem. 218:1-27. Many glycoproteins have been exploited for therapeutic purposes, and during the last two decades, recombinant versions of naturally-occurring, secreted glycoproteins have been a major product of the biotechnology industry.
• EPO erythropoietin
• therapeutic mAbs therapeutic monoclonal antibodies
• tPA tissue plasminogen activator
• IFN- ⁇ interferon- ⁇
• GM-CSF granulocyte-macrophage colony stimulating factor
• hCH human chorionic gonadotrophin
• the oligosaccharide component can significantly affect properties relevant to the efficacy of a therapeutic glycoprotein, including physical stability, resistance to protease attack, interactions with the immune system, pharmacokinetics, and specific biological activity. Such properties may depend not only on the presence or absence, but also on the specific structures, of oligosaccharides. Some generalizations between oligosaccharide structure and glycoprotein function can be made. For example, certain oligosaccharide structures mediate rapid clearance of the glycoprotein from the bloodstream through interactions with specific carbohydrate binding proteins, while others can be bound by antibodies and trigger undesired immune reactions. Jenkins et al, 1996, Nature Biotechn. 14:975-981.
• Mammalian cells are the preferred hosts for production of therapeutic glycoproteins, due to their capability to glycosylate proteins in the most compatible form for human application. Cumming, 1991, supra; Jenkins et al, 1996, supra. Bacteria very rarely glycosylate proteins, and like other types of common hosts, such as yeasts, filamentous fungi, insect and plant cells, yield glycosylation patterns associated with rapid clearance from the blood stream, undesirable immune interactions, and in some specific cases, reduced biological activity.
• Chinese hamster ovary (CHO) cells have been most commonly used during the last two decades. In addition to giving suitable glycosylation patterns, these cells allow consistent generation of genetically stable, highly productive clonal cell lines.
• glycosylation of recombinant therapeutic proteins produced in animal cells can be engineered by overexpression of glycosyl transferase genes in host cells. Bailey, 1991, Science 252:1668-1675. However, previous work in this field has only used constitutive expression of the glycoprotein-modifying glycosyl transferase genes, and little attention has been paid to the expression level.
• the present invention is directed, generally, to host cells and methods for the generation of proteins having an altered glycosylation pattern resulting in improved therapeutic values.
• the invention is directed to host cells that have been engineered such that they are capable of expressing a preferred range of a glycoprotein-modifying glycosyl transferase activity which increases complex N-linked oligosaccharides carrying bisecting GlcNAc.
• the present invention is directed to methods for the generation of modified glycoforms of glycoproteins, for example antibodies, including whole antibody molecules, antibody fragments, or fusion proteins that include a region equivalent to the Fc region of an immunoglobulin, having an enhanced Fc-mediated cellular cytotoxicity, and glycoproteins so generated.
• the invention is based, in part, on the inventors' discovery that there is an optimal range of glycoprotein-modifying glycosyl transferase expression for the maximization of complex N-linked oligosaccharides carrying bisecting GlcNAc. More specifically, the present invention is directed to a method for producing altered glycoforms of proteins having improved therapeutic values, e.g., an antibody which has an enhanced antibody dependent cellular cytotoxicity (ADCC), in a host cell.
• the invention provides host cells which harbor a nucleic acid encoding the protein of interest, e.g., an antibody, and at least one nucleic acid encoding a glycoprotein-modifying glycosyl transferase.
• the present invention provides methods and protocols of culturing such host cells under conditions which permit the expression of said protein of interest, e.g., the antibody having enhanced antibody dependent cellular cytotoxicity. Further, methods for isolating the so generated protein having an altered glycosylation pattern, e.g. , the antibody with enhanced antibody dependent cellular cytotoxicity, are described.
• the present invention provides alternative glycoforms of proteins having improved therapeutic properties.
• the proteins of the invention include antibodies with an enhanced antibody-dependent cellular cytotoxicity (ADCC), which have been generated using the disclosed methods and host cells.
• ADCC antibody-dependent cellular cytotoxicity
• FIGURE 1 depicts the representation of typical Fc-associated oligosaccharide structures.
• FIGURE 2 depicts a Western blot analysis of tetracycline-regulated expression of GnT III in two different tTA-producing CHO clones.
• CHOt2 (lanes A and B) and CHOtl7 (lanes C and D) cells were transfected with the pUDH10-3GnTIIIm expression vector and cultured for 36 h in the absence (lanes A and C) or presence of tetracycline, at a concentration of 400 ng/ml (lanes B and D).
• Cell lysates were then prepared for western blot analysis probing with an antibody (9E10), which recognizes specifically the c-myc tag added to GnT III at its carboxy-terminus.
• FIGURE 3 depicts determination of the range of tetracycline concentrations where myc-tagged GnT III expression can be controlled.
• CHOtl7 cells were transfected with the pUDH10-3-GnTIIIm expression vector and then cultured for 48h in the presence of the indicated concentrations of tetracycline.
• GnT III levels in cell lysates from these cultures were compared using western blot analysis.
• GnT III was detected via the c-myc tag using 9E10 antibody.
• FIGURES 4A through 4B depict screening of CHO clones for stable, tetracycline-regulated expression of GnT V (FIGURE 4A) or myc-tagged GnT III (FIGURE 4B) glycosyltransferases by western blot analysis.
• CHOtl7 cells were co- transfected with a vector for expression of puromycin resistance (pPUR) and either P UHD10-3GnTV (FIGURE 4A) or pUDH10-3GnTIIIm (FIGURE 4B) and stable CHO clones were selected for resistance to puromycin (7.5 ⁇ /ml), in the presence of tetracycline (2 ⁇ g/ml).
• FIGURES 5 A and 5B depict verification of activity of heterologous GnT V
• FIGURE 5A and Gn T III (FIGURE 5B) glycosyltransferaseas in vivo by lectin blot analysis.
• Cellular glycoproteins from various stable clones (numbered as in FIGURE 4), cultured in the absence or presence (+) of tetracycline (2 ⁇ g/ml), were resolved by SDS-PAGE, blotted to a membrane, and probed with either L-PHA (FIGURE 5A) or E- PHA (FIGURE 5B) lectins.
• FIGURES 5 A and 5B A comparison of lectin blots in FIGURES 5 A and 5B indicates a broader range of substrates, among the endogenous CHO cell glycoproteins, for GnT III (FIGURE 5B) than for GnT V (FIGURE 5A).
• FIGURES 6A through 6D depict inhibition of cell growth upon glycosyltransferase overexpression.
• CHO-tet-GnTIIIm cells were seeded to 5-10% confluency and cultured in the absence (FIGURES 6A and 6B) or presence (FIGURES 6C and 6D) of tetracycline. Cultures were photographed 45 (FIGURES 6A and 6C) and 85 (FIGURES 16B and 6D) hours after seeding.
• FIGURE 7 depicts sequences of oligonucleotide primers used in PCRs for the construction of the chCE7 heavy chain gene.
• Forward and reverse primers are identified by the suffixes ".fwd” and “.rev”, respectively. Overlaps between different primers, necessary to carry out secondary PCR steps using the product of a primary PCR step as a template, are indicated. Restriction sites introduced, sequences annealing to the CE7 chimeric genomic DNA, and the synthetic leader sequence introduced, are also indicated.
• FIGURE 8 depicts sequences of oligonucleotide primers used in PCRs for the construction of the chCE7 light chain gene.
• Forward and reverse primers are identified by the suffixes ".fwd” and “.rev” respectively. Overlaps between different primers, necessary to carry out secondary PCR steps using as a template the product of a primary PCR step, are indicated. Restriction sites introduced, sequences annealing to the CE7 chimeric genomic DNA, and the leader sequence introduced, are also indicated.
• FIGURE 9 depicts MALDI/TOF-MS spectra of neutral oligosaccharide mixtures from chCE7 samples produced either by SP2/0 mouse myeloma cells (FIGURE 9A, oligosaccharides from 50 ⁇ g of CE7-SP2/0), or by CHO-tetGnTIII- chCE7 cell cultures differing in the concentration of tetracycline added to the media, and therefore expressing the GnT III gene at different levels.
• CE7-2000t (FIGURE 9B, oligosaccharides from 37.5 ⁇ g of antibody)
• CE7-60t oligosaccharides from 37.5 ⁇ g of antibody
• CE7-30t oligosaccharides from 25 ⁇ g of antibody
• CE7-15t oligosaccharides from 10 ⁇ g of antibody
• FIGURE 10 depicts N-linked oligosaccharide biosynthetic pathways leading to bisected complex oligosaccharides via a GnT Ill-catalyzed reaction.
• M stands for Mannose
• Gn N-acetylglucosamine (GlcNAc)
• G galactose
• Gn b bisecting GlcNAc
• f fucose.
• the oligosaccharide nomenclature consists of enumerating the M, Gn, and G residues attached to the core oligosaccharide and indicating the presence of a bisecting GlcNAc by including a Gn b .
• the oligosaccharide core is itself composed of 2 Gn residues and may or may not include a fucose.
• the major classes of oligosaccharides are shown inside dotted frames.
• Man I stands for Golgi mannosidase; GnT, GlcNAc transferase; and GalT, for galactosy -transferase.
• the mass associated with the major, sodium-associated oligosaccharide ion that is observed MALDI/TOF-MS analysis is shown beside each oligosaccharide.
• the masses associated with both fucosylated (+f) and non-fucosylated (-f) forms are shown.
• FIGURE 1 1 depicts N-linked oligosaccharide biosynthetic pathway leading to bisected complex and bisected hybrid oligosaccharides via GnT Ill-catalyzed reactions.
• M stands for mannose; Gn N-acetylglucosamine (GlcNAc); G, galactose; Gn b , bisecting GlcNAc; f, fucose.
• the oligosaccharide nomenclature consists of enumerating the M, Gn, and G residues attached to the common oligosaccharide and indicating the presence of bisecting GlcNAc by including a Gn ⁇
• the oligosaccharide core is itself composed of 2 Gn residues and may or not include a fucose.
• the major classes of oligosaccharides are shown inside dotted frames.
• Man I stands for Golgi mannosidase; TnT, GlcNAc transferase; and GalT, for galactosyltransferase.
• FIGURE 12 depicts ADCC activity of different chCE7 samples. Lysis of IMR-32 neuroblastoma cells by human lymphocytes (target: effector ratio of 1 : 19, 16 h incubation at 37 °C), mediated by different concentrations of chCE7 samples, was measured via retention of a fluorescent dye. The percentage of cytotoxicity is calculated relative to a total lysis control (by means of a detergent), after subtraction of the signal in the absence of antibody.
• FIGURE 13 depicts the GnT III expression of different cultures of CHO-tet-
• FIGURES 14A and 14B depict the specificity of antigen binding of the C2B8 anti-CD20 monoclonal antibody using an indirect immunofluorescence assay with cells in suspension.
• CD20 positive cells SB cells; ATCC deposit no.ATCC CCL 120
• CD20 negative cells HBV cells; ATCC deposit no. ATCC CCL 120.1
• Cells of each type were incubated with C2B8 antibody produced at 25ng/ml tetracycline as a primary antibody.
• An anti-human IgG Fc specific, polyclonal, FITC conjugated antibody was used for all samples as a secondary antibody.
• FIGURE 15 depicts the ADCC activity of different C2B8 antibody samples at different antibody concentrations (0.04-5 ⁇ g/ml).
• Sample C2B8-nt represents the ADCC activity of the C2B8 antibody produced in a cell line without GnT III expression.
• Samples C2B8-2000t, C2B8-50t and C2B8-25t show the ADCC activity of three antibody samples produced at decreasing tetracycline concentrations (i.e., increasing GnT III expression).
• glycoprotein-modifying glycosyl transferase refers to an enzyme that effects modification of the glycosylation pattern of a glycoprotein.
• glycoprotein-modifying glycosyl transferases include, but are not limited to glycosyl transferases such as GnT III, GnT V, GalT, and Man II.
• glycosylation engineering is considered to include any sort of change to the glycosylation pattern of a naturally occurring polypeptide or fragment thereof.
• Glycosylation engineering includes metabolic engineering of the glycosylation machinery of a cell, including genetic manipulations of the oligosaccharide synthesis pathways to achieve altered glycosylation of glycoproteins expressed in cells.
• glycosylation engineering includes the effects of mutations and cell environment on glycosylation.
• the term host cell covers any kind of cellular system which can be engineered to generate modified glycoforms of proteins, protein fragments, or peptides of interest, including antibodies and antibody fragments.
• the host cells have been manipulated to express optimized levels of at least one glycoprotein- modifying glycosyl transferase, including, but not limited to GnT III, GnT V, GalT, and Man II, and/or at least one glycosidase.
• Host cells include cultured cells, e.g., mammalian cultured cells, such as CHO cells, BHK cells, NSO cells, SP2/0 cells, or hybridoma cells, yeast cells, and insect cells, to name only few, but also cells comprised within a transgenic animal or cultured tissue.
• mammalian cultured cells such as CHO cells, BHK cells, NSO cells, SP2/0 cells, or hybridoma cells, yeast cells, and insect cells, to name only few, but also cells comprised within a transgenic animal or cultured tissue.
• Fc-mediated cellular cytotoxicity is intended to include antibody dependent cellular cytotoxicity (ADCC), and cellular cytotoxicity directed to those cells that have been engineered to express on their cell surface an Fc-region or equivalent region of an immunoglobin G, and cellular cytotoxicity mediated by a soluble fusion protein consisting of a target protein domain fused to the N-terminus of an Fc-region or equivalent region of an immunoglobulin G.
• ADCC antibody dependent cellular cytotoxicity
• the objective of the present invention is to provide glycoforms of proteins, in particular antibodies, including whole antibody molecules, antibody fragments, or fusion proteins that include a region equivalent to the Fc region of an immunoglobulin, to produce new variants of a therapeutic protein.
• the invention is based, in part, on the inventors' discovery that the glycosylation reaction network of a cell can be manipulated to maximize the proportion of certain glycoforms within the population, and that certain glycoforms have improved therapeutic characteristics.
• the invention is further based, in part, on the discovery of ways to identify glycoforms of proteins which have an improved therapeutic value, and how to generate them reproducibly.
• the invention is further based, in part, on the discovery that there is a preferred range of glycoprotein-modifying glycosyl transferase expression in the antibody-generating cell, for increasing complex N-linked oligosaccharides carrying bisecting GlcNAc.
• the present invention is directed, generally, to methods for the glycosylation engineering of proteins to alter and improve their therapeutic properties. More specifically, the present invention describes methods for producing in a host cell an antibody which has an altered glycosylation pattern resulting in an enhanced antibody dependent cellular cytotoxicity (ADCC).
• ADCC antibody dependent cellular cytotoxicity
• the present invention provides host cells which harbor a nucleic acid encoding an antibody and at least one nucleic acid encoding a glycoprotein-modifying glycosyl transferase.
• the present invention provides methods and protocols of culturing such host cells under conditions which permit the expression of the desired antibody having an altered glycosylation pattern resulting in an enhanced antibody dependent cellular cytotoxicity. Further, methods for isolating the so generated antibody with enhanced antibody dependent cellular cytotoxicity are described.
• two monoclonal antibodies namely the anti-neuroblastoma antibody chCE7, and the anti-CD20 antibody C2B8, have been used as model therapeutic glycoproteins, and the target glycoforms have been those carrying a special class of carbohydrate, namely bi-antennary complex N-linked oligosaccharides modified with bisecting N-acetylglucosamine (GlcNAc).
• CHO cells are used as host cells, although many other cell systems may be contemplated as host cell system.
• glycosyl transferase that adds a bisecting GlcNAc to various types of N-linked oligosaccharides, GlcNAc- transferase III (GnT III), is not normally produced by CHO cells. Stanley and Campell, 1984. J. Biol Chem. 261 :13370-13378.
• a CHO cell line with tetracycline-regulated overexpression of a rat GnT III cDNA was established.
• the inventors discovered that overexpression of GnT III to high levels led to growth inhibition and was toxic to the cells.
• the effect of the enzyme expression on the cell growth sets an upper limit to the level of glycoprotein-modifying glycosyl transferase overexpression and may therefore also limit the extent to which poorly accessible glycosylation sites can be modified by engineering of glycosylation pathways and patterns using unregulated expression vectors.
• the production of a set of chCE7 mAb and C2B8 samples differing in their glycoform distributions by controlling GnT III expression in a range between basal and toxic levels are disclosed.
• Measurement of the ADCC activity of the chCE7 mAb samples showed an optimal range of GnT III expression for maximal chCE7 in vitro biological activity. The activity correlated with the level of Fc-associated bisected, complex oligosaccharides.
• GnT III expression of GnT III within the practical range, i.e.. where no significant growth inhibition and toxicity are observed, led to an increase of the target bisected, complex structures for this set of chCE7 samples.
• the pattern of oligosaccharide peaks in MALDI/TOF-mass spectrometric analysis of chCE7 samples produced at high levels of GnT III indicates that a significant proportion of potential GnT III substrates is diverted to bisected hybrid oligosaccharide by-products. Minimization of these by-products by further engineering of the pathway could therefore be valuable.
• the present invention provides host cell systems suitable for the generation of altered glycoforms of any protein, protein fragment or peptide of interest, for which such an alteration in the glycosylation pattern is desired.
• the nucleic acids encoding such protein, protein fragment or peptide of interest may be obtained by methods generally known in the art.
• the nucleic acid may be isolated from a cDNA library or genomic library.
• cloning strategies which may be used, see, e.g., Maniatis, 1989, Molecular Cloning, A Laboratory Manual, Cold Springs Harbor Press, N.Y.; and Ausubel et al, 1989, Current Protocols in Molecular Biology, (Green Publishing Associates and Wiley Interscience, N. Y.).
• the coding sequence of the protein, protein fragment or peptide of interest may be synthesized in whole or in part, using chemical methods well known in the art. See, for example, Caruthers et al, 1980, Nuc. Acids Res. Symp. Ser. 7:215-233; Crea and Horn, 1980, Nuc. Acids Res. USA 9:2331 ; Matteucci and Caruthers, 1980, Tetrahedron Letters 21:719; Chow and Kempe, 1981, Nuc. Acids Res. 9:2807-2817.
• the protein itself could be produced using chemical methods to synthesize its amino acid sequence in whole or in part.
• peptides can be synthesized by solid phase techniques, cleaved from the resin, and purified by preparative high performance liquid chromatography. E.g., see Creighton, 1983, Protein Structures And Molecular Principles, W.H. Freeman and Co., N.Y. pp. 50-60. The composition of the synthetic peptides may be confirmed by amino acid analysis or sequencing (e.g., the Edman degradation procedure; see Creighton, 1983. Proteins. Structures and Molecular Principles. W.H. Freeman and Co.. N.Y., pp. 34-49).
• the invention provides methods for the generation and use of host cell systems for the production of glycoforms of antibodies or antibody fragments or fusion proteins which include antibody fragments with enhanced antibody- dependent cellular cytotoxicity. Identification of target epitopes and generation of antibodies having potential therapeutic value, for which modification of the glycosylation pattern is desired, and isolation of their respective coding nucleic acid sequence is within the scope of the invention.
• antibodies to target epitopes of interest include but are not limited to polyclonal, monoclonal, chimeric, single chain, Fab fragments and fragments produced by an Fab expression library.
• Such antibodies may be useful, e.g., as diagnostic or therapeutic agents.
• therapeutic agents neutralizing antibodies, i.e., those which compete for binding with a ligand, substrate or adapter molecule, are of especially preferred interest.
• various host animals are immunized by injection with the target protein of interest including, but not limited to, rabbits, mice, rats, etc.
• Various adjuvants may be used to increase the immunological response, depending on the host species, including but not limited to Freund's (complete and incomplete), mineral gels such as aluminum hydroxide, surface active substances such as lysolecithin, pluronic polyols, polyanions, peptides, oil emulsions, keyhole limpet hemocyanin, dinitrophenol, and potentially useful human adjuvants such as BCG (bacille Calmette-Guerin) and Corynebacterium parvum.
• BCG Bacille Calmette-Guerin
• Corynebacterium parvum bacille Calmette-Guerin
• Monoclonal antibodies to the target of interest may be prepared using any technique which provides for the production of antibody molecules by continuous cell lines in culture. These include, but are not limited to, the hybridoma technique originally described by Kohler and Milstein, 1975, Nature 256:495-497, the human B-cell hybridoma technique (Kosbor et al. , 1983, Immunology Today 4:72; Cote et al. , 1983, Proc. Natl. Acad. Sci. U.S.A. 80:2026-2030) and the EBV-hybridoma technique (Cole et al, 1985, Monoclonal Antibodies and Cancer Therapy, Alan R. Liss, Inc., pp. 77-96).
• Patent No. 4,946,7778 can be adapted to produce single chain antibodies having a desired specificity.
• Antibody fragments which contain specific binding sites of the target protein of interest may be generated by known techniques.
• such fragments include, but are not limited to, F(ab') 2 fragments which can be produced by pepsin digestion of the antibody molecule and the Fab fragments which can be generated by reducing the disulfide bridges of the F(ab') 2 fragments.
• Fab expression libraries may be constructed (Huse et al, 1989, Science 246:1275-1281) to allow rapid and easy identification of monoclonal Fab fragments with the desired specificity to the target protein of interest.
• the coding nucleic acid sequence is identified and isolated using techniques well known in the art. See, supra.
• the present invention provides host cell expression systems for the generation of proteins having modified glycosylation patterns.
• the present invention provides host cell systems for the generation of glycoforms of proteins having an improved therapeutic value. Therefore, the invention provides host cell expression systems selected or engineered to increase the expression of a glycoprotein-modifying glycosyltransferase.
• host cell expression systems may be engineered to comprise a recombinant nucleic acid molecule encoding a glycoprotein-modifying glycosyltransferase, operatively linked to a constitutive or regulated promoter system.
• host cell expression systems may be employed that naturally produce, are induced to produce, and/or are selected to produce a glycoprotein-modifying glycosyltransferase.
• the present invention provides a host cell that has been engineered to express at least one nucleic acid encoding a glycoprotein- modifying glycosyl transferase.
• the host cell is transformed or transfected with a nucleic acid molecule comprising at least one gene encoding a glycoprotein-modifying glycosyl transferase.
• the host cell has been engineered and/or selected in such way that an endogenous glycoprotein-
• the host cell may be selected to carry a mutation triggering expression of an endogenous glycoprotein-modifying glycosyl transferase.
• This aspect is exemplified in one specific embodiment, where the host cell is a CHO leclO mutant.
• the host cell may be engineered such that an endogenous glycoprotein-modifying glycosyl transferase is activated.
• the host cell is engineered such that an endogenous glycoprotein- modifying glycosyl transferase has been activated by insertion of a regulated promoter element into the host cell chromosome.
• the host cell has been engineered such that an endogenous glycoprotein-modifying glycosyl transferase.has been activated by insertion of a constitutive promoter element, a transposon, or a retroviral element into the host cell chromosome.
• any type of cultured cell line can be used as a background to engineer the host cell lines of the present invention.
• CHO cells, BHK cells, NSO cells, SP2/0 cells, or a hybridoma cell line is used as the background cell line to generate the engineered host cells of the invention.
• the invention is contemplated to encompass engineered host cells expressing any type of glycoprotein-modifying glycosyl transferase as defined herein.
• at least one glycoprotein-modifying glycosyl transferase expressed by the host cells of the invention is GnT III, or, alternatively, ⁇ (l,4)-N-acetylglucosaminy -transferase V (GnT V).
• GnT III or, alternatively, ⁇ (l,4)-N-acetylglucosaminy -transferase V
• GnT V ⁇ (l,4)-galactosyl transferase
• Man II mannosidase II
• GnT III is coexpressed with GalT. In another embodiment of the invention, GnT III is coexpressed with Man II. In a further embodiment of the invention, GnT III is coexpressed with GalT and Man II.
• any other permutation of glycoprotein- modifying glycosyl transferases is within the scope of the invention. Further, expression of a glycosidase in the host cell system may be desired.
• One or several nucleic acids encoding a glycoprotein-modifying glycosyl transferase may be expressed under the control of a constitutive promoter or, alternately.
• a regulated expression system Suitable regulated expression systems include, but are not limited to, a tetracycline-regulated expression system, an ecdysone-inducible expression system, a lac-switch expression system, a glucocorticoid-inducible
• glycoprotein-modifying glycosyl transferases are comprised within the host cell system, some of them may be expressed under the control of a constitutive promoter, while others are expressed under the control of a regulated promoter.
• the optimal expression levels will be different for each protein of interest, and will be determined using routine experimentation. Expression levels are determined by methods generally known in the art, including Western blot analysis using a glycosyl transferase specific antibody, Northern blot analysis using a glycosyl transferase specific nucleic acid probe, or measurement of enzymatic activity.
• a lectin may be employed which binds to biosynthetic products of the glycosyl transferase, for example, E 4 -PHA lectin.
• the nucleic acid may be operatively linked to a reporter gene; the expression levels of the glycoprotein-modifying glycosyl transferase are determined by measuring a signal correlated with the expression level of the reporter gene.
• the reporter gene may transcribed together with the nucleic acid(s) encoding said glycoprotein-modifying glycosyl transferase as a single mRNA molecule; their respective coding sequences may be linked either by an internal ribosome entry site (IRES) or by a cap-independent translation enhancer (CITE).
• the reporter gene may be translated together with at least one nucleic acid encoding said glycoprotein-modifying glycosyl transferase such that a single polypeptide chain is formed.
• the nucleic acid encoding the glycoprotein-modifying glycosyl transferase may be operatively linked to the reporter gene under the control of a single promoter, such that the nucleic acid encoding the glycoprotein-modifying glycosyl transferase and the reporter gene are transcribed into an RNA molecule which is alternatively spliced into two separate messenger RNA (mRNA) molecules; one of the resulting mRNAs is translated into said reporter protein, and the other is translated into said glycoprotein-modifying glycosyl transferase.
• mRNA messenger RNA
• nucleic acids encoding a glycoprotein-modifying glycosyl transferase may be arranged in such way that they are transcribed as one or as several mRNA molecules. If they are transcribed as a single mRNA molecule, their respective coding sequences may be linked either by an internal ribosome entry site (IRES) or by a cap-independent translation enhancer (CITE). They may be transcribed from a single promoter into an RNA molecule which is alternatively spliced
• the present invention provides host cell expression systems for the generation of therapeutic proteins, for example antibodies, having an enhanced antibody-dependent cellular cytotoxicity, and cells which display the IgG Fc region on the surface to promote Fc-mediated cytotoxicity.
• the host cell expression systems have been engineered and/or selected to express nucleic acids encoding the protein for which the production of altered glycoforms is desired, along with at least one nucleic acid encoding a glycoprotein-modifying glycosyl transferase.
• the host cell system is transfected with at least one gene encoding a glycoprotein-modifying glycosyl transferase.
• the transfected cells are selected to identify and isolate clones that stably express the glycoprotein-modifying glycosyl transferase.
• the host cell has been selected for expression of endogenous glycosyl transferase.
• cells may be selected carrying mutations which trigger expression of otherwise silent glycoprotein-modifying glycosyl transferases.
• CHO cells are known to carry a silent GnT III gene that is active in certain mutants, e.g., in the mutant LeclO.
• any type of cultured cell line can be used as background to engineer the host cell lines of the present invention.
• such cell lines are engineered to further comprise at least one transfected nucleic acid encoding a whole antibody molecule, an antibody fragment, or a fusion protein that includes a region equivalent to the Fc region of an immunoglobulin.
• a hybridoma cell line expressing a particular antibody of interest is used as background cell line to generate the engineered host cells of the invention.
• At least one nucleic acid in the host cell system encodes GnT III, or, alternatively, GnT V.
• GnT III or, alternatively, GnT V.
• other types of glycoprotein-modifying glycosyl transferase may be expressed in the host system, typically in addition to GnT III or GnT
• GnT III is coexpressed with GalT.
• GnT III is coexpressed with Man II.
• GnT III is coexpressed with GalT and Man II.
• any other permutation of glycoprotein- modifying glycosyl transferases is within the scope of the invention. Further, expression of a glycosidase in the host cell system may be desired.
• One or several nucleic acids encoding a glycoprotein-modifying glycosyl transferase may be expressed under the control of a constitutive promoter, or alternately, a regulated expression system.
• Suitable regulated expression systems include, but are not limited to, a tetracycline-regulated expression system, an ecdysone-inducible expression system, a lac-switch expression system, a glucocorticoid-inducible expression system, a temperature-inducible promoter system, and a metallothionein metal-inducible expression system.
• glycoprotein-modifying glycosyl transferases may be comprised within the host cell system, some of them may be expressed under the control of a constitutive promoter, while others are expressed under the control of a regulated promoter.
• the optimal expression levels will be different for each protein of interest, and will be determined using routine experimentation. Expression levels are determined by methods generally known in the art, including Western blot analysis using a glycosyl transferase specific antibody, Northern blot analysis using a glycosyl transferase specific nucleic acid probe, or measurement of enzymatic activity.
• a lectin may be employed which binds to biosynthetic products of glycosyl transferase, for example, E 4 -PHA lectin.
• the nucleic acid may be operatively linked to a reporter gene; the expression levels of the glycoprotein-modifying glycosyl transferase are determined by measuring a signal correlated with the expression level of the reporter gene.
• the reporter gene may transcribed together with the nucleic acid(s) encoding said glycoprotein-modifying glycosyl transferase as a single mRNA molecule; their respective coding sequences may be linked either by an internal ribosome entry site (IRES) or by a cap-independent translation enhancer (CITE).
• the reporter gene may be translated together with at least one nucleic acid encoding said glycoprotein-modifying glycosyl transferase such that a single polypeptide chain is formed.
• the nucleic acid encoding the glycoprotein-modifying glycosyl transferase may be operatively linked to the reporter gene under the control of a single promoter, such that the nucleic acid
• RNA 16 encoding the glycoprotein-modifying glycosyl transferase and the reporter gene are transcribed into an RNA molecule which is alternatively spliced into two separate messenger RNA (mRNA) molecules; one of the resulting mRNAs is translated into said reporter protein, and the other is translated into said glycoprotein-modifying glycosyl transferase.
• mRNA messenger RNA
• nucleic acids encoding a glycoprotein-modifying glycosyl transferase may be arranged in such way that they are transcribed as one or as several mRNA molecules. If they are transcribed as single mRNA molecule, their respective coding sequences may be linked either by an internal ribosome entry site (IRES) or by a cap-independent translation enhancer (CITE). They may be transcribed from a single promoter into an RNA molecule which is alternatively spliced into several separate messenger RNA (mRNA) molecules, which then are each translated into their respective encoded glycoprotein-modifying glycosyl transferase.
• IRS internal ribosome entry site
• CITE cap-independent translation enhancer
• host-expression vector systems may be utilized to express the coding sequence of the protein of interest and the coding sequence of the glycoprotein- modifying glycosyl transferase.
• mammalian cells are used as host cell systems transfected with recombinant plasmid DNA or cosmid DNA expression vectors containing the coding sequence of the protein of interest and the coding sequence of the glycoprotein-modifying glycosyl transferase.
• CHO cells, BHK cells, NSO cells, or SP2/0 cells, or alternatively, hybridoma cells are used as host cell systems.
• other eukaryotic host cell systems may be contemplated, including, yeast cells transformed with recombinant yeast expression vectors containing
• the coding sequence of the protein of interest and the coding sequence of the glycoprotein-modifying glycosyl transferase insect cell systems infected with recombinant virus expression vectors (e.g., baculovirus) containing the coding sequence of the protein of interest and the coding sequence of the glycoprotein-modifying glycosyl transferase; plant cell systems infected with recombinant virus expression vectors (e.g., cauliflower mosaic virus, CaMV; tobacco mosaic virus, TMV) or transformed with recombinant plasmid expression vectors (e.g., Ti plasmid) containing the coding sequence of the protein of interest and the coding sequence of the glycoprotein-modifying glycosyl transferase; or animal cell systems infected with recombinant virus expression vectors (e.g., adenovirus, vaccinia virus) including cell lines engineered to contain multiple copies of the DNA encoding the protein of interest and the coding sequence of the glycoprotein-modifying glycosyl transferas
• stable expression is generally preferred to transient expression because it typically achieves more reproducible results and also is more amenable to large scale production.
• host cells can be transformed with the respective coding nucleic acids controlled by appropriate expression control elements (e.g., promoter, enhancer, sequences, transcription terminators, polyadenylation sites, etc.), and a selectable marker.
• appropriate expression control elements e.g., promoter, enhancer, sequences, transcription terminators, polyadenylation sites, etc.
• engineered cells may be allowed to grow for 1 -2 days in an enriched media, and then are switched to a selective media.
• the selectable marker in the recombinant plasmid confers resistance to the selection and allows selection of cells which have stably integrated the plasmid into their chromosomes and grow to form foci which in turn can be cloned and expanded into cell lines.
• a number of selection systems may be used, including, but not limited to, the herpes simplex virus thymidine kinase (Wigler et al, 1977, Cell H:223), hypoxanthine-guanine phosphoribosyltransferase (Szybalska & Szybalski, 1962. Proc. Natl Acad. Sci. USA 48:2026), and adenine phosphoribosyltransferase (Lowy et al, 1980. Cell 22:817) genes, which can be employed in tk “ , hgprt " or aprt " cells, respectively.
• antimetabolite resistance can be used as the basis of selection for dhfr, which confers resistance to methotrexate (Wigler et al, 1980, Natl. Acad. Sci. USA 77:3567; O'Hare et al, 1981, Proc. Natl. Acad. Sci. USA 78:1527); gpt, which confers resistance to mycophenolic acid (Mulligan & Berg, 1981, Proc. Natl. Acad. Sci. USA 78:2072); neo, which confers resistance to the aminoglycoside G-418 (Colberre-Garapin et al, 1981, J.
• trpB which allows cells to utilize indole in place of tryptophan
• hisD which allows cells to utilize histinol in place of histidine
• the host cells which contain the coding sequence and which express the biologically active gene products may be identified by at least four general approaches; (a) DNA-DNA or DNA-RNA hybridization; (b) the presence or absence of
• marker gene functions; (c) assessing the level of transcription as measured by the expression of the respective mRNA transcripts in the host cell; and (d) detection of the gene product as measured by immunoassay or by its biological activity.
• the presence of the coding sequence of the protein of interest and the coding sequence of the glycoprotein-modifying glycosyl transferase(s) inserted in the expression vector can be detected by DNA-DNA or DNA-RNA hybridization using probes comprising nucleotide sequences that are homologous to the respective coding sequences, respectively, or portions or derivatives thereof.
• the recombinant expression vector/host system can be identified and selected based upon the presence or absence of certain "marker" gene functions (e.g., thymidine kinase activity, resistance to antibiotics, resistance to methotrexate, transformation phenotype, occlusion body formation in baculovirus, etc.).
• certain "marker" gene functions e.g., thymidine kinase activity, resistance to antibiotics, resistance to methotrexate, transformation phenotype, occlusion body formation in baculovirus, etc.
• a marker gene can be placed in tandem with the coding sequences under the control of the same or different promoter used to control the expression of the coding sequences. Expression of the marker in response to induction or selection indicates expression of the coding sequence of the protein of interest and the coding sequence of the glycoprotein- modifying glycosyl transferase.
• transcriptional activity for the coding region of the protein of interest and the coding sequence of the glycoprotein-modifying glycosyl transferase can be assessed by hybridization assays.
• RNA can be isolated and analyzed by Northern blot using a probe homologous to the coding sequences of the protein of interest and the coding sequence of the glycoprotein-modifying glycosyl transferase or particular portions thereof.
• total nucleic acids of the host cell may be extracted and assayed for hybridization to such probes.
• the expression of the protein products of the protein of interest and the coding sequence of the glycoprotein-modifying glycosyl transferase can be assessed immunologically, for example by Western blots, immunoassays such as radioimmuno-precipitation, enzyme-linked immunoassays and the like.
• the ultimate test of the success of the expression system involves the detection of the biologically active gene products.
• the present invention provides glycoforms of antibodies and antibody fragments having an enhanced antibody-dependent cellular cytotoxicity.
• ADCC antibody-dependent cellular cytotoxicity
• An IgG molecule carries two N-linked oligosaccharides in its Fc region, one on each heavy chain.
• an antibody is produced as a population of glycoforms which share the same polypeptide backbone but have different oligosaccharides attached to the glycosylation sites.
• the oligosaccharides normally found in the Fc region of serum IgG are of complex bi-antennary type ( Wormald et al. ,
• the mouse- or hamster-derived cell lines used in industry and academia for production of unconjugated therapeutic mAbs normally attach the required oligosaccharide determinants to Fc sites.
• IgGs expressed in these cell lines lack, however, the bisecting GlcNAc found in low amounts in serum IgGs. Lifely et al, 1995, Glycobiology 318:813-822.
• CAMPATH-IH humanized IgGl
• the rat cell-derived antibody reached a similar in vitro ADCC activity as CAMPATH-IH antibodies produced in standard cell lines, but at significantly lower antibody concentrations.
• the CAMPATH antigen is normally present at high levels on lymphoma cells, and this chimeric mAb has high ADCC activity in the absence of a bisecting GlcNAc. Lifely et al, 1995, supra. Even though in the study of Lifely et al. 1995, supra, the maximal in vitro ADCC activity was not increased by altering the glycosylation pattern, the fact that this level of activity was obtained at relatively low antibody concentrations for the antibody carrying bisected oligosaccharides suggests an important role for bisected oligosaccharides. An approach was developed to increase the ADCC activity of IgG Is with low basal activity levels by producing glycoforms of these antibodies carrying bisected oligosaccharides in the Fc region.
• Example 4 infra, C2B8 antibody modified according to the disclosed method had an about sixteen-fold higher ADCC activity than the standard, unmodified C2B8 antibody produced under identical cell culture and
• C2B8 antibody sample expressed in CHO-tTA-C2B8 cells that do not have GnT III expression showed a cytotoxic activity of about 31% (at 1 ⁇ g/ml antibody concentration), measured as in vitro lysis of SB cells (CD20+) by human lymphocytes.
• C2B8 antibody derived from a CHO cell culture expressing GnT III at a basal, largely repressed level showed at 1 ⁇ g/ml antibody concentration a 33% increase in ADCC activity against the control at the same antibody concentration.
• antibodies of the invention having an enhanced antibody-dependent cellular cytotoxicity include, but are not limited to, anti-human neuroblastoma monoclonal antibody (chCE7) produced by the methods of the invention, a chimeric anti-human renal cell carcinoma monoclonal antibody (ch-G250) produced by the methods of the invention, a humanized anti-HER2 monoclonal antibody produced by the methods of the invention, a chimeric anti-human colon, lung, and breast carcinoma monoclonal antibody (ING-1) produced by the methods of the invention, a humanized anti-human 17-1 A antigen monoclonal antibody (3622W94) produced by the methods of the invention, a humanized anti-human colorectal tumor antibody (A33) produced by the methods of the invention, an anti-human melanoma
• chCE7 anti-human neuroblastoma monoclonal antibody
• ch-G250 chimeric anti-human renal cell carcinoma monoclonal antibody
• ING-1 produced by the methods of the invention
• the present invention relates to a method for enhancing the ADCC activity of therapeutic antibodies. This is achieved by engineering the glycosylation pattern of the Fc region of such antibodies, in particular by maximizing the proportion of antibody molecules carrying bisected complex oligosaccharides N-linked to the conserved glycosylation sites in their Fc regions.
• Fc-containing molecules to which the presently disclosed methods can be applied include, but are not limited to, (a) soluble fusion proteins made of a targeting protein domain fused to the N-terminus of an Fc-region (Chamov and Ashkenazi, 1996, TIBTECH 14: 52) and (b) plasma membrane-anchored fusion proteins made of a type II transmembrane domain that localizes to the plasma membrane fused to the N-terminus of an Fc region ( Stumble, P.F., 1998, Nature Biotech. 16: 1357).
• the targeting domain directs binding of the fusion protein to undesirable cells such as cancer cells, i.e., in an analogous fashion to therapeutic antibodies.
• undesirable cells such as cancer cells
• the application of presently disclosed method to enhance the Fc-mediated cellular cytotoxic activity mediated by these molecules would therefore be identical to the method applied to therapeutic antibodies. See, Example 2 of United States Provisional Application Serial Number 60/082,581, incorporated herein by reference.
• the undesirable cells in the body have to express the gene encoding the fusion protein.
• This can be achieved either by gene therapy approaches, . e. , by transfecting the cells in vivo with a plasmid or viral vector that directs expression of the fusion protein-encoding gene to undesirable cells, or by implantation in the body of cells genetically engineered to express the fusion protein on their surface.
• the later cells would normally be implanted in the body inside a polymer capsule (encapsulated cell therapy) where they cannot be destroyed by an Fc- mediated cellular cytotoxicity mechanism. However should the capsule device fail and the escaping cells become undesirable, then they can be eliminated by Fc-mediated cellular cytotoxicity. Stomme et al.
• the presently disclosed method would be applied either by incorporating into the gene therapy vector an additional gene expression cassette directing adequate or optimal expression levels of GnT III or by engineering the cells to be implanted to express adequate or optimal levels of GnT III.
• the aim of the disclosed method is to increase or maximize the proportion of surface-displayed Fc regions carrying
• glycoprotein-modifying glycosyl transferase overexpression This phenomenon has not been reported previously, probably due to the fact that inventigators generally have used constitutive promoters for related experiments.
• the growth effect sets an upper limit to the level of glycoprotein-modifying glycosyl transferase overexpression, and may thereby also limit the maximum extent of modification of poorly accessible glycosylation sites.
• CHO-tTA was first generated that constitutively expresses a tetracycline-controlled transactivator (tTA) at a level for the adequate for the regulation system.
• tTA tetracycline-controlled transactivator
• Lipofectamine reagent Gibco, Eggenfelden, Germany
• CHO (DUKX) cells were co-transfected, with pUHD 15-1, a vector for constitutive expression of the tTA gene (Gossen and Bujard, 1992, Proc. Nat. Acad. Sci. USA, 89: 5547-5551 ), and pSV2Neo, a vector for constitutive expression of a neomycin resistance gene (Clontech, Palo Alto, CA).
• Stable, drug-resistant clones were selected and screened for adequate levels of tTA expression via transient transfections with a tetracycline-regulated ⁇ -galactosidase expression vector, pUHG16-3.
• C-myc epitope-encoding DNA was added to the 3' end of the rat GnT III cDNA (Nishikawa et al. , 1992, J. Biol. Chem. 267: 18199-18204) by PCR amplification. Nilsson et al, 1993, J Cell Biol. 120:5-13.
• the product was sequenced and subcloned into pUHDl 0-3, a vector for tetracycline-regulated expression (Gossen and Bujard, supra) to generate the vector pUHD 10-3 -GnT Him.
• the human GnT V cDNA (Saito et al, 1995, Eur. J. Biochem. 233:18-26), was directly subcloned into p UHDI 0-3 to generate plasmid vector p UHDI 0-3 -GnT V.
• CHO-tTA cells were co- transfected using a calcium phosphate transfection method (Jordan and Wurm. 1996, Nucleic Acids Res.
• glycosyl transferase overexpressing cell lines were established by first generating an intermediate CHO cell line constitutively expressing the tetracycline-controlled transactivator (tTA) at an adequate level for the system to work. Yin et al. , 1996. Anal. Biochem. 235:195-201. This level had to be high enough to activate high levels of transcription, in the absence of tetracycline, from the minimal promoter upstream of the glycosyl transferase genes.
• tTA tetracycline- controlled transactivator
• CHO cells were co-transfected with a vector for constitutive expression for tTA, driven by the human cytomegalovirus (hCMV) promoter/enhancer, and a vector for expression of a neomycin-resistance (Neo R ) gene.
• hCMV human cytomegalovirus
• Neo R neomycin-resistance
• Neo R expression cassette Selection for neomycin resistance merely selects for integration of an intact Neo R expression cassette, while the use of an excess of the tTA- expression vector increases the probability of finding clones with good expression of tTA.
• the mixed population of clones has to be screened using a functional assay for tTA expression. Gossen and Bujard, 1992, supra; Yin et al, 1996, supra. This was done by transfection of each clone with a second vector harboring a reporter gene, lacZ, under the control of the tet-promoter and screening for tetracycline-regulated (tet- regulated), transient expression (i.e., one to three days after transfection) of ⁇ -galactosidase activity.
• tet- regulated tetracycline-regulated
• CHOtl7 which showed the highest level of tet-regulated ⁇ -galactosidase activity among twenty screened clones, was selected for further work.
• CHOtl7 cells were tested for tet-regulated expression of GnT III by transfecting the cells with vector pUHDlO-3-GnT Illm and comparing the relative levels of GnT III after incubation of the cells in the presence and absence of tetracycline for 36 h. GnT III levels were compared by western blot analysis, using a monoclonal antibody (9E10) which recognizes the c-myc peptide epitope tag at the carboxy-
• FIGURE 2 shows that in clone CHOtl7 GnT III accumulation is significantly higher in the absence than in the presence of tetracycline.
• CHOtl7 cells were co-transfected with vector pUHDlO-3-GnT Illm and vector, pPUR, for expression of a puromycin resistance gene.
• CHOtl7 cells were co- transfected with pUHDlO-3-GnT V and pPUR vectors to generate an analogous cell line for this other glycosyl transferase.
• a highly efficient calcium phosphate transfection method was used and the DNA was linearized at unique restriction sites outside the eucaryotic expression cassettes, to decrease the probability of disrupting these upon integration.
• Stable integrants were selected by puromycin resistance, keeping tetracycline in the medium throughout clone selection to maintain glycosyl transferase expression at basal levels.
• sixteen puromycin resistant clones were grown in the presence and absence of tetracycline, and eight of each were analysed by western blot analysis (FIGURE 4). The majority of the clones showed good regulation of glycosyl transferase expression.
• glycosyl transferase different maximal levels of glycosyl transferase were observed. This may be due to variations in the site of integration or number of copies integrated.
• Activity of the glycosyl transferases was verified by E-PHA and L- PHA lectin binding to endogenous cellular glycoproteins derived from various clones 5 grown in the presence and absence of tetracycline (FIGURE 5).
• Lectins are proteins which bind to specific oligosaccharide structures.
• E-PHA lectin binds to bisected oligosaccharides, the products of GnT Ill-catalyzed reactions, and L-PHA binds to tri- and tetra-antennary oligosaccharides produced by GnT V-catalyzed reactions (Merkle and Cummings, 1987, Methods Enzymol 138:232-259).
• Inhibition of cell growth could be due to a direct effect of overexpression of membrane-anchored, Golgi-resident glycosyl transferases independent of their in vivo catalytic activity, e.g., via misfolding in the endoplasmic reticulum (ER) causing saturation of elements which assist protein folding in the ER. This could possibly affect the folding and secretion of other essential cellular proteins.
• inhibition of growth could be related to increased in vivo activity of the glycosyl transferase leading to a change of the glycosylation pattern, in a function-disrupting fashion, of a set of endogenous glycoproteins necessary for growth under standard in vitro culture conditions.
• the growth-inhibition effect has two consequences for engineering the glycosylation of animal cells.
• Other ways of linking expression of these two classes of proteins e.g., through the use of multiple constitutive promoters of similar strength or use of multicistronic, constitutive expression vectors, should also be avoided.
• clones with very high, constitutive expression of the target glycoprotein, a pre-requisite for an economical bioprocess would also have high expression of the glycosyl transferase and would be eliminated during the selection process.
• Linked, inducible expression could also be problematic for industrial bioprocesses, since the viability of the growth-arrested cells would be compromised by the overexpression of the glycosyl transferase.
• glycosyl transferase overexpression for glycosylation engineering approaches.
• the conversions of many glycosyl transferase-catalyzed reactions in the cell, at the endogenous levels of glycosyl transferases, are very high for several glycosylation sites.
• glycosylation sites where the oligosaccharides are somewhat inaccesible or are stabilized in unfavorable conformations for specific glycosyl tranferases also exist.
• ChCE7 was chosen which has insignificant ADCC activity when produced by SP2/0 recombinant mouse myeloma cells. ChCE7 recognizes a tumor-associated 190-kDa membrane glycoprotein and reacts strongly with all neuroblastoma tumors tested to date. It has a high affinity for its antigen (K d of 10 10 M " ') and, because of its high tumor- specificity, it is routinely used as a diagnostic tool in clinical pathology. Amstutz et al, 1993. Int. J. Cancer 53:147-152. In recent studies, radiolabelled chCE7 has shown good tumor localization in human patients. D ⁇ rr, 1993, Eur. J. Nucl. Med. 20:858.
• the glycosylation pattern of chCE7 an anti-neuroblastoma therapeutic monoclonal antibody (mAb) was engineered in CHO cells with tetracycline-regulated expression of GnT III.
• mAb an anti-neuroblastoma therapeutic monoclonal antibody
• a set of mAb samples differing in their glycoform distribution was produced by controlling GnT III expression in a range between basal and toxic levels, and their glycosylation profiles were analyzed by MALDI/TOF-MS of neutral oligosaccharides.
• Measurement of the ADCC activity of these samples showed an optimal range of GnT III expression for maximal chCE7 in vitro biological activity, and this activity correlated with the level of Fc-associated bisected, complex oligosaccharides.
• Introns from the heavy constant region were removed by splicing with overlap-extension-PCR.
• Clackson et al 1991, General Applications of PCR to Gene Cloning and Manipulation, p. 187-214, in: McPherson et al. (ed.), PCR a Practical Approach, Oxford University Press, Oxford.
• CHO-tet-GnT Illm (see, supra) cells were co-transfected with vectors pchCE7H, pchCE7L, and pZeoSV2 (for Zeocin resistance, Invitrogen, Groningen, The Netherlands) using a calcium phosphate transfection method. Zeocin resistant clones were transferred to a 96-well cell culture plate and assayed for chimeric antibody expression using an ELISA assay specific for human IgG constant region. Lifely et al, 1995, supra.
• chCE7 antibody samples were derived from parallel cultures of a selected clone (CHO-tet-GnT IIIm-chCE7), grown in FMX-8 cell culture medium supplemented with 10% FCS; each culture containing a different level of tetracycline and therefore expressing GnT III at different levels.
• CHO-tet-GnT IIIm-chCE7 cells were expanded and preadapted to a different concentration of tetracycline during 7 days. The levels of tetracycline were 2000, 60, 30, and 15 ng/ml.
• Antibody was purified from culture medium by Protein A affinity chromatography on a 1 ml HiTrap Protein A column (Pharmacia Biotech, Uppsala, Sweden), using linear pH gradient elution from 20 mM sodium phosphate, 20 mM sodium citrate, 500 mM sodium chloride, 0.01% Tween 20, 1M urea, pH 7.5 (buffer A) to buffer B (buffer A without sodium phosphate, pH 2.5).
• Affinity purified chCE7 samples were buffer exchanged to PBS on a 1 ml Resources cation exchange column (Pharmacia Biotech, Uppsala, Sweden). Final purity was judged to be higher than 95% from SDS-PAGE and Coomasie-Blue staining. The concentration of each sample was estimated from the absorbance at 280 nm.
• Protein, detergents, and salts were removed by passing the digests through microcolumns containing, from top to bottom, 20 ml of SepPak Cl 8 reverse phase matrix (Waters, Milford, MA), 20 ml of Dowex AG 50W X8 cation exchange matrix (BioRad, Hercules, CA), and 20 ml of AG 4X4 anion exchange matrix (BioRad, Hercules. CA).
• the microcolumns were made by packing the matrices in a Gel Loader tip (Eppendorf, Basel, Switzerland) filled with ethanol, followed by an equilibration with water. K ⁇ ster et al, 1997, Anal Biochem. 250:82-101.
• the oligosaccharide samples were then analyzed by matrix-assisted laser desorption ionization/time-of-flight-mass spectrometry (MALDI/TOF-MS) using an Elite Voyager 400 spectrometer (Perseptive Biosystems, Farmingham, MA), equipped with a delayed ion extraction MALDI-ion source, in positive ion and reflector modes, with an accelaration voltage of 20 kV.
• MALDI/TOF-MS matrix-assisted laser desorption ionization/time-of-flight-mass spectrometry
• IMR-32 cells were labeled with the fluorescent dye Calcein AM for 20 min (final concentration 3.3 ⁇ M).
• the labeled cells (80O00 cells/well) were incubated for lh with different concentrations of CE7 antibody. Then, monocyte depleted mononuclear cells were added (1'500'000 cells/well) and the cell mixture was incubated for 16 h at 37°C in a 5% CO2 atmosphere. The supernatant was discarded and the cells were washed once with HBSS and lysed in Triton X-100 (0.1%).
• Retention of the fluorescent dye in IMR-32 cells was measured with a fluorometer (Perkin Elmer, Luminscence Spectrometer LS 50B, (Foster City, CA) and specific lysis was calculated relative to a total lysis control, resulting from exposure of the target to a detergent instead of exposure to antibody.
• the signal in the absence of antibody was set to 0% cytotoxicity.
• Each antibody concentration was analyzed by triplicate, and the assay was repeated three separate times.
• ChCE7 heavy and light chain expression vectors were constructed incorporating the human cytomegalovirus (hCMV) promoter, the bovine growth hormone termination and polyadenylation sequences, and eliminating all heavy and light chain introns. This vector design was based on reports of reproducible high-level expression of recombinant IgG genes in CHO cells. Reff et al, 1994, supra; Trill et al, 1995, Current Opinion Biotechnol 6:553-560. In addition, a unique restriction sites was introduced in each chain, at the junction between the variable and constant regions. These sites conserve the reading frame and do not change the amino acid sequence.
• hCMV human cytomegalovirus
• CHO-tet-GnT IIIm-chCE7 cells with stable, tetracycline-regulated expression of GnT III and stable, constitutive expression of chCE7, were established and scaled-up for production of a set of chCE7 samples. During scale-up, four parallel cultures derived from the same CHO clone were grown, each at a different level of tetracycline and therefore only differing in the level of expression of the GnT III gene.
• MALDI/TOF-MS time-of- flight instrument
• composition is consistent with core fucosylated, bi- antennary complex oligosaccharide structures carrying zero or one galactose residues, respectively, typical of Fc-associated oligosaccharides, and as previously observed in NMR analysis of Fc oligosaccharides derived from a chimeric IgGl expressed in SP2/0 cells. Bergweff et al, 1995, supra.
• the four HexNAc-containing peaks are also mainly fucosylated, although a small amount of non-fucosylated structures is evident from the peak at m/z 1339 (see, FIGURE 10).
• the level of galactosylation is also not very different between the CHO- and SP2/0-derived material.
• the molecules with five HexNAcs are present in a lower level of GnT III expression (CE7-2000t sample. FIGURE 9B).
• HexNAc-containing isomers have never been found in the Fc region of IgGs and their syntheses are catalyzed by GlcNAc -transferases discrete from GnT III.
• CE7-SP2/0 CHO-derived samples and at a lower level in CE7-SP2/0 (FIGURE 9). It corresponds to five hexoses plus two HexNAcs.
• the only known N-linked oligosaccharide structure with this composition is a five mannose-containing compound of the high-mannose type.
• Another high mannose oligosaccharide, a six mannose one (m z 1420) is also present at much lower levels.
• such oligosaccharides have been detected in the Fc of IgGs expressed in the late phase of batch cell cultures. Yu Ip et al, 1994, supra.
• ChCE7 shows some ADCC activity, measured as in vitro lysis of neuroblastoma cells by human lymphocytes, when expressed in CHO-tet-GnTIIIm cells with the minimum level of GnT III overexpression (FIGURE 12, sample CE7-2000t). Raising the level of GnT III produced a large increase in ADCC activity (FIGURE 12, sample CE7-60t). Further overexpression of GnT III was not accompanied by an additional increase in activity (FIGURE 12, sample CE7-30t), and the highest level of expression actually led to reduced ADCC (FIGURE 12, sample CE7-15t).
• GnT III transfers a GlcNAc from the co-substrate UDP- GlcNAc to the different oligosaccharides.
• C2B8 is an anti-human CD20 chimeric antibody, Reff, M.E. et al,
• VH and VL genes of the C2B8 antibody were assembled synthetically using a set of overlapping single-stranded oligonucleotides (primers) in a one-step process using PCR, Kobayashi et al, 1997, Biotechniques 23: 500-503.
• the sequence data coding for mouse immunoglobulin light and heavy chain variable regions (VL and VH respectively) of the anti-CD20 antibody were obtained from a published international patent application (International Publication Number: WO 94/11026).
• the assembled DNA fragments were subcloned into pBluescriptIIKS(+) and sequenced by DNA cycle sequencing to verify that no mutations had been introduced.
• C2B8 Monoclonal Antibody
• VH and VL coding regions of the C2B8 monoclonal antibody were subcloned in pchCE7H and pchCE7L respectively.
• the sequences coding for the variable heavy and light chains of the anti-neuroblastoma CE7 were exchanged with the synthetically assembled variable heavy and variable light chain regions of C2B8.
• CHO-tTA is the parental cell line of CHO-tet-GnTIIIm. See, supra.
• the method for the generation of a CHO-tTA cell line expressing C2B8 antibody without GnT III expression was exactly the same as for CHO-tet-GnTIIIm-C2B8 and CHO-tet-GnTIIIm-chCE7. See, supra.
• the clone chosen for further work was named CHO-tTA-C2B8.
• C2B8 Antibody Samples Two C2B8 antibody samples were derived from parallel CHO-tet-GnTIIIm-C2B8 cultures; each culture containing different levels of tetracycline and therefore expected to express GnTIII at different levels. The levels of tetracycline were 2000, 50, and 25ng/ml. The C2B8 antibody samples derived from these cultures were designated as C2B8-2000t, C2B8-50t. and C2B8-25t, respectively. In parallel, one antibody sample (C2B8-nt) was made from a CHO-tTA-C2B8 culture, this cell line does not express GnT III. CHO-tTA-C2B8 cells were cultured without tetracycline.
• C2B8 Antigen Binding The specificity of antigen binding of the C2B8 anti-CD20 monoclonal antibody was verified using an indirect immunofluorescence assay with cells in suspension.
• CD20 positive cells SB cells; ATCC deposit no.ATCC CCL 120
• HSB cells CD20 negative cells
• Cells of each type were incubated with C2B8 antibody produced at 25ng/ml tetracycline, as a primary antibody.
• An anti-human IgG Fc specific, polyclonal, FITC conjugated antibody was used for all samples as a secondary antibody (SIGMA, St. Louis, MO). Cells were examined using a Leica (Bensheim, Germany) fluorescence microscope.
• GnT III Is Expressed At Different Levels In Different Cell Lines And Cultures.
• the lysates of the culture grown at 25ng/ml tetracycline showed an intense band at the corresponding molecular weight of GnT III whereas cultures grown at 50 and at 2000ng/ml had much less expression of GnT III as shown in FIGURE 13.
• C2B8 samples produced from parallel cultures of cells expressing different levels of GnT III were purified from the culture supernatants by affinity chromatography and buffer exchanged to PBS on a cation exchange column. Purity was estimated to be higher than 95% from Coomassie Blue staining of an SDS-PAGE under reducing conditions.
• These antibody samples were derived from expression of antibody genes whose variable regions were synthesized by a PCR assembly method. Sequencing of the synthetic cDNA fragments revealed no differences to the original C2B8 variable region sequences previously published in an international patent application (International Publication Number WO 94/11026).
• C2B8-2000t antibody derived from a CHO-tet-GnTIII culture grown at 2000ng/ml of tetracycline (i.e., at the basal level of cloned GnT III expression) showed at 1 ⁇ g/ml antibody concentration a 33% increase in ADCC activity with respect to the C2B8-nt sample at the same antibody concentration.
• C2B8-25t showed significant levels of cytotoxicity at very low antibody concentrations.
• the C2B8-25t sample at 0.06 ⁇ g/ml showed an ADCC activity similar to the maximal ADCC activity of C2B8-nt at 1 ⁇ g/ml.
• This result showed that sample C2B8-25t, at a 16- fold lower antibody concentration, reached the same ADCC activity as C2B8-nt.
• This result indicates that the chimeric anti-CD20 antibody C2B8 produced in a cell line actively expressing GnT III was significantly more active than the same antibody produced in a cell line that did not express GnT III.
• One advantage of this antibody using the methods of the invention is that (1) lower doses of antibody have to be injected to reach the same therapeutic effect, having a remedial impact in the economics of antibody production, or (2) that using the same dose of antibody a better therapeutic effect is obtained.
• ADCC activity of the modified antibody depends on the expression level of GnT III. See, supra. Therefore, it is important to select a clone with constitutive expression of GnT III alone or together with other glycosyltransferase and/or glycosidase genes at optimal or near optimal levels.
• GnT III expression of GnT III, either alone or together with other glycosyl transferases such as ⁇ (l,4)-galactosyl transferase (GalT) are first determined using cell lines with regulated expression of the glycosyl transferases. Stable clones with constitutive expression of GnT III and any other cloned glycosyltransferase are then screened for expression levels near the optimum.
• GnT III glycosyl transferases
• Each glycosyl transferase gene is linked, via an IRES sequence, to a reporter gene encoding a protein retained in the cell, e.g. , green fluorescent protein (GFP) or a plasma membrane protein tagged with a peptide that can be recognized by available antibodies. If more than one glycosyl transferase is being tested, a different marker is associated with each glycosyl transferase, e.g., GnT III may be associated to GFP and GalT may be associated to blue fluorescent protein (BFP).
• GFP green fluorescent protein
• BFP blue fluorescent protein
• An eucaryotic expression cassette consisting of the GnT III cDNA upstream of an IRES element upstream of the GFP cDNA is first assembled by standard subcloning and/or PCR steps. This cassette is then subcloned in the tetracycline regulated expression vector pUHD10-3 (see, supra), downstream of the tet-promoter and upstream of the termination and polyadenylation sequences resulting in vector pUHD10-3-GnTIII-GFP.
• pUHD10-3 see, supra
• CHO-tTA cells (see, supra) expressing the tetracycline-responsive transactivator, are co-transfected with vector pUHD10-3-GnTIII-GFP and vector pPur for expression of a puromycin- resistance gene. See, supra. Puromycin resistant clones are selected in the presence of tetracycline. Individual clones are cultured by duplicate in the presence (2 ⁇ g/ml) or absence of tetracycline.
• clones that show inhibition of growth in the absence of tetracycline, due to glycosyltransferase overexpression are selected and analyzed by fluorescence-activated cell sorting (FACS) for detection of the GFP- associated signal.
• FACS fluorescence-activated cell sorting
• a clone giving the highest induction ratio, defined as the ratio of fluorescence in the absence of tetracycline to fluorescence in the presence of tetracycline is chosen for further work and designated as CHO-tet-GnTIII-GFP.
• CHO- tet-GnTIII-GFP are transfected with expression vectors for antibody chCE7 and a clone with high constitutive expression of this antibody is selected CHO-tet-GnTIII-GFP-
• chCE7 antibody samples are purified from the culture supernatants by affinity chromatography. In parallel, the cells from each culture are analyzed by FACS to determine the mean level of GFP-associated fluorescence, which is correlated to the expression level of GnT III, of each culture. The in vitro ADCC activity of each chCE7 antibody sample is determined (see, supra) and the maximal in vitro ADCC activity of each sample is plotted against the mean fluorescence of the cells used to produce it.
• the GnTIII-IRES-GFP cassette (see, supra) is subcloned in a constitutive expression vector.
• CHO cells are stably co-transfected with this vector and a vector for puromycin resistance. Puromycin resistant cells are selected.
• This population of stably transfected cells is then sorted via FACS, and clones are selected which express the levels of reporter GFP gene near the within the range where optimal or near-optimal ADCC activity is achieved. See, supra.
• This final transfection step may be done either on CHO cells already stably expressing a therapeutic antibody or on empty CHO cells, e.g., DUKX or DG44 dhfr- CHO cells. In the latter case, the clones obtained from the procedure described above will be transfected with therapeutic antibody-expression vectors in order to generate the final antibody-producing cell lines.
• Encapsulated cell therapy is currently being tested for a number of diseases.
• An encapsulated cell implant is designed to be surgically placed into the body to deliver a desired therapeutic substance directly where it is needed.
• the encapsulated device has a mechanical failure, cells can escape and become undesirable.
• One way to destroy escaped, undesirable cells in the body is via an Fc-mediated cellular cytoxicity mechanism.
• the cells to be
• encapsulated can be previously engineered to express a plasma membrane-anchored fusion protein made of a type II transmembrane domain that localizes to the plasma membrane fused to the N-terminus of an Fc region.
• a plasma membrane-anchored fusion protein made of a type II transmembrane domain that localizes to the plasma membrane fused to the N-terminus of an Fc region.
• Cells inside the capsule are protected against Fc-mediated cellular cytoxicity by the capsule, while escaped cells are accesible for destruction by lymphocytes which recognize the surface-displayed Fc regions, i.e., via an Fc-mediated cellular cytoxicity mechanism.
• This example illustrates how this Fc-mediated cellular cytoxicity activity is enhanced by glycosylation engineering of the displayed Fc regions.
• BHK cells which already produce the surface-displayed Fc chimera and a secreted, therapeutic protein, are first stably transfected with a vector for constitutive expression of GnTIII linked via an IRES element to expression of GFP.
• Stable transfectants are selected by means of a marker incorporated in the vector, e.g., by means of a drug resistance marker and selected for survival in the presence of the drug.
• Stable transfectants are analyzed by fluorescence-activated cell sorting (FACS) and a series of clones with different mean fluorescence levels are selected for further studies. Each selected clone is grown and reanalyzed by FACS to ensure stability of GFP, and therefore associated GnT III, expression.
• FACS fluorescence-activated cell sorting
• GnTIII-IRES-GFP vector are solubilized from the membrane by means of a detergent and then purified by affinity chromatography. The oligosaccharides are then removed, purified and analyzed by MALDI-TOF/MS. See, supra. The resulting MALDI-
• the MALDI profile from the unmodified cells does not show any peak associated to bisected oligosaccharides.
• the clone with carrying the highest levels of bisected complex oligosaccharides on the displayed Fc regions is chosen for further work.
• Two Fc-mediated cellular cytoxicity activity assays are then conducted in parallel.
• the target cells are derived from the clone selected above.
• the target cells are the original cells to be encapsulated and which have not been modified to express GnTIII.
• the assay is conducted using the procedure described previously (see, supra) but in the absence of any additional antibody, since the target cells already display Fc regions. This experiment demonstrates that the Fc-mediated cellular cytoxicity activity against the cells expressing GnT III is higher than that against cells not expressing this glycosyltransferase.

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