JPH04502700A - 新規な結合タンパク質の生成と選択 - Google Patents
新規な結合タンパク質の生成と選択Info
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- JPH04502700A JPH04502700A JP1510087A JP51008789A JPH04502700A JP H04502700 A JPH04502700 A JP H04502700A JP 1510087 A JP1510087 A JP 1510087A JP 51008789 A JP51008789 A JP 51008789A JP H04502700 A JPH04502700 A JP H04502700A
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- C—CHEMISTRY; METALLURGY
- C40—COMBINATORIAL TECHNOLOGY
- C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
- C40B40/00—Libraries per se, e.g. arrays, mixtures
- C40B40/02—Libraries contained in or displayed by microorganisms, e.g. bacteria or animal cells; Libraries contained in or displayed by vectors, e.g. plasmids; Libraries containing only microorganisms or vectors
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K1/00—General methods for the preparation of peptides, i.e. processes for the organic chemical preparation of peptides or proteins of any length
- C07K1/107—General methods for the preparation of peptides, i.e. processes for the organic chemical preparation of peptides or proteins of any length by chemical modification of precursor peptides
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/795—Porphyrin- or corrin-ring-containing peptides
- C07K14/805—Haemoglobins; Myoglobins
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/81—Protease inhibitors
- C07K14/8107—Endopeptidase (E.C. 3.4.21-99) inhibitors
- C07K14/811—Serine protease (E.C. 3.4.21) inhibitors
- C07K14/8114—Kunitz type inhibitors
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1037—Screening libraries presented on the surface of microorganisms, e.g. phage display, E. coli display
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K38/00—Medicinal preparations containing peptides
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2319/00—Fusion polypeptide
- C07K2319/70—Fusion polypeptide containing domain for protein-protein interaction
Abstract
Description
Claims (1)
- 【特許請求の範囲】 子の定められたターゲットと結合するタンパク質を得る方法であって、 a)複数の複製可能な遺伝子パッケージの(多様性ある)変えられた集団を用意 し、この遺伝子バフケージはそれぞれ、(1)該還伝子パッケージの外面上にタ ンパク質を顕示するよう指示する構造シグナル、および(ii)ターゲットに結 合するための、ポテンシャル結合ドメインからなる核酸構造体を有しており、こ の核酸構造体は、一本鎖抗体を除く、外面に顕示されるポテンシャル結合タンパ ク質の発現をコードするものであり、そしてここでは上記集団によって、複数の 異なるポテンシャル結合ドメインが顕示される、b)次に上記タンパク質を発現 させ、そして上記遺伝子パッケージの外面上で上記タンばク質の顕示を生じさせ 、c)次に、上記タンパク質のポテンシャル結合ドメインと上記ターゲット物質 とが相互に反応することができるように、上記遺伝子パッケージをターゲット物 質と接触させ、そしてターゲット物質と結合する結合ドメインを持つ遺伝子パッ ケージを、ターゲット物質と結合しない結合ドメインを持つ遺伝子パッケージか ら分離し、次いで、 d)結合成功結合ドメインを有する、少なぐとも1つの遺伝子パフケージを採取 し、次に複製することからなり、好ましくはさらに、 e)上記の結合成功結合ドメインのアミノ酸配列を決定し、さらにより好ましく は、 f)工程(3)に従い、複数の複製可能な遺伝子パッケージの(多様性を有する )変えられた新規な集団を調製するが、この(f)工程では、この新規パッケー ジのポテンシャル結合ドメインを生む親のポテンシャル結合ドメインが、工程( e)で限定された配列を有する決定成功結合ドメインであるようにし、 そして上記工程(b)〜(e)を、この新規集団を用いて繰り返して行うことを 包含する方法。 2.上記工程(a)の複数の複製可能な遺伝子パッケージの集団が、 1)ポテンシャル結合ドメインの発現をコードする第1の配列、3よびコードさ れたタンパク質が選択された複製可能な遺伝子パッケージの外面上に顕示される ようにシグナルをコードする第2の配列よりなる、そのそれぞれのDNA挿入体 の(多様性を有する)変えられた集団を調製し、次いでii)生成するDNA構 築物の集団を、選択された複製可能な遺伝子パッケージ中に組み込むことによっ て、複製可能な遺伝子パッケージの集団を作る、 ことによって街られるものであり、 これらの工程において、好ましくは、 (1)上記集団は、少なくとも10′であるが、10′より多くない数の異なる ポテンシャル結合ドメインを顕示するという特徴を有しており、そして(または )(2)上記集団の複数の遺伝子パッケージの10′のうちの1個一10′のう ちの1個が同一ポテンシャル結合ドメインを顕示するものである、 請求項1の方法。 3.工程(a)において、核酸構造体によってゴードされるポテンシャル結合ド メインが、親のポテンシャル結合ドメインのアミノ酸配列の中の限定された数の アミノ酸を置き換えることによって、親のポテンシャル結合ドメインと配列的に 各々関連性を有しており、好ましくは該集団の(多様性)変化のレベルが、親の ポテンシャル結合ドメインのアミノ酸配列中のアミノ酸を1個だけ置き換えるこ とによって得られるポテンシャル結合ドメインを顕示する遺伝子パッケージが探 知可能な量でだけ存在するレベルに選択し、そして好ましくは、初期に選択され る親のポテンシャル結合ドメインは少なくとも1個の安定した結合ドメインを持 ち、この結合ドメインが少なくとも60℃の融点を有し、かつまた少なくとも3 .0〜8.0のpH域で安定である請求項1の方法。 4.顕示可能なポテンシャル結合タンパク質がキメラタンパク質であり、そして 好ましくは上記シグナルが、上記キメラタンパク質のうちの、上記遺伝子パッケ ージまたは遺伝子パッケージにより自然に感染された細胞によってコードされた 自然の外面タンパク質のうちの少なくとも機能的部分、およびアミノ酸配列上で 本質的に同一のセグメントにより発信され、そして、上記機能的部分は、上記キ メラタンパク質を遺伝子パッケージの外面へ運搬することを指示するものである 、請求項1の方法。 5.初期に、親のポテンシャル結合ドメインを少なくとも約60℃の融点を有す る既知のタンパク質のドメインに対して50%以上の相同性を有するように選択 する、請求項3の方法。 6.初期に選択される親の結合タンパク質が予め定められたターゲットに対して 優先的に結合しないものである請求項5の方法。 7.上記ターゲット物質が1個または2個以上の別個の分子から構成されており 、上記親のポテンシャル結合ドメインはアミノ酸の配列上で特徴を有し、さらに 、親のポテンシャル結合ドメインの外面上に有在し、同時に上記ターゲット物質 のうちの1個だけの分子に全部が接触することができるアミノ酸の相互反応セッ トを同定し、この相互反応セット中のアミノ酸のうちの1個または2個以上を異 なるアミノ酸で置き換えることによってポテンシャル結合ドメインを得るをさら に含む、請求項3の方法。 8.上記ターゲット物質が非高分子有機化合物であり、そして該ポテンシャル結 合ドメインが、約80個以上のアミノ酸残基から成るものである請求項1の方法 。 9.上記ターデット物質が非高分子有機化合物であり、そして該ポテンシャル結 合ドメインが約80個以上のアミノ残基から成るものである請求項1の方法。 10.上記ターゲット物質が水溶液に不溶解性の鉱物である、請求項1の方法。 11.上記ターゲット物質が水溶夜中で安定な無機分子または鉱イオンである、 請求項1の方法。 12.上記ターゲット物質が水溶液中で安定な存機金属化合物である、請求項1 の方法。 13.上記ターゲット物質が一般的なプロテアーゼであり、そして不動化(固定 化)されている、このターゲット物質を、不可逆阻害剤または共有結合阻害剤と ともにまづインキュベートして、該プロテアーゼを不活性化する、請求項1の方 法。 14.上記複製可能な遺伝子パッケージがアフィニティー分離することができ、 かつまた生存率を維持することができる、細胞またはウイルスである、請求項1 の方法。 15.上記既知の結合タンパク質が酵素であって、この酵素の活性が上記複製可 能な遺伝子パッケージ、またはこの複製可能な遺伝子パッケージの宿主、または 上記ターゲット、に対して有害な作用を有するものであり、上記核酸構造体の大 半がこのような有害な酵素活性を持たない既知の結合タンパク質の類縁体の発現 をコードするものである、請求項5の方法16.上記ターゲットがイオン化可能 な基を有しており、上記ポテンシャル結合タンパク質とこのターゲットとの双方 がともに安定に維持されるように、使用しようとする溶液のpHおよびアフィニ ティ分離のpHを選訳する請求項1の方法。 17.上記ターゲットがイオン化可能な基を有しており、上記ポテンシャル結合 タンパク質とこのターゲットとの間の静電気反発が減少されるように、反対のイ オンを供給することをさらに包含する請求項1の方法。 18.所望の結合タンパク質を使用しようとする条件の下で、またアフィニティ 分離の条件の下で、上記ポテンシャル結合ドメインと上記ターゲソトとが相対す る電荷を有するか、またはそのいずれか一方は中性であるように、初期のポテン シャルドメインを選択する、請求項1の方法。 19.上記複製可能な遺伝子パッケージが、Escherichia coli 株のような細菌細胞である請求項28の方法。 20.上記複製可能な遺伝子パッケージがBacillusの内生胞子のような 細菌胞子、より好ましくはB.subtilis株の内生胞子である、請求項1 の方法。 21.上記複製可能な遺伝子パッケージが線状ファージのようなバクテリオファ ージ、好ましくは重Ml3 Escherichia coliパ.クテリオZ #ージの誘導体、又はPseudomonas aeruginosa線状ファ ージPf1の誘導体である、請求項1の方法。 22.シグナルがMl3のコートタンパク質または外面輸送シグナルを具有して いるそのセグメントにより発信される、請求項21の方法。 23.シグナルがMl3の遺伝子IIIタンパク質または外面輸送シグナルを具 有しているそのセグメントにより発信される請求項21の方法。 24.(多様性を有する)変えられたコドンの各々に組み込まれているヌクレオ チドの分布を、実質的に等量の酸性アミノ酸ぢよび塩基性アミノ酸が産生される ように選択する、好ましくは(多様性を有する)変えられたコドンの各々に組み 込まれているヌクレオチドの分布を、量的に最大値{(1.−存在率(ストップ コドン))X(最小存在率のアミノ酸の存在率)/(最大存在率のアミノ酸の存 在率)1が産生されるように、さらに■択する、請求項2の方法。 25.工程(c)が、パッケージを第2の物質と接触させ、次いで二の第2物質 に結合しないパッケージを分離することをさらに包含する、請求項1の方法。 26.第1の予め定められたターゲットを認識する新規な結合タンパク質を得た 後に、この新規な結合タンパク質を、第2の予め定められたターゲットにも結合 する誘導タンパク質を分離するための親のポテンシャル結合タンパク質として選 択する、請求項1の方法。 27.初期に選択する親のポテンシャル結合ドメインを、(a)クシ膵臓トリプ シンインヒビター、クランビン、オボムコイド、T4リゾチーム、ニワトリ卵白 リゾチーム、リポヌクレアーゼ、およびアズリンの結合ドメイン、および(b) 上記ドメインのいずれとも少なくとも50%は相同性を有し、かつまた少なくと も60℃の融点を有する結合ドメインから成る群から選択する、請求項3の方法 。 23.上記外面輸送シグナルが、1amBタンパク質または外面輸送シグナルを 具有するそのセグメントによって発信される、請求項36の方法。 29.上記外面輸送シグナルが1amBタンパク質または外面輸送シグナルを具 有するそのセグメントによって発信される、請求項36の方法。 30.(i)上記細胞またはウイルスによって認識される外面輸送シグナルを発 信する少なくとも1つのセグメントである、細胞またはウイルスの外面タンパク 質のセグメントおよび、(ii)上記外面タンパク質とは異質のドメイン、好ま しくは上記外面タンパク質に優先的に結合するものではなく、ターゲット物質に 結合するものである異質のドメインよりなるキメラタンパク質。 31.請求項30のキメラタンパク質の発現をコードする核酸構造体を含有する 複製可能な遺伝子パッケージ。 32.少なくとも1例においてポテンシャル結合ドメインの第1分類中で変えら れたアミノ酸残基がポテンシャル結合ドメインの次の分類中で不変にされている 、請求項1の方法。 33.(多様性を有する)変えられたDNAの集団の調製方法であって、(多様 性を有する)変えられたコドンの各々に組み込まれているヌクレオチドの分布を 、実質的に等量の酸性アミノ酸および塩基性アミノ酸が産生されるように選択す る、好ましくは(多様性を有する)変えられたコドンの各々に組み込まれている ヌクレオチドの分布を、さらに量的に最大値{(1.−存在率(ストップコドン ))X(最小存在率のアミノ酸の存在率)/(最大存在率のアミノ酸の存在率) }が産生されるように選択する、調製法。 34.タンパク質が第1のターゲット物質を認識する第1の異質ドメインおよび 第2のターゲット物質を認識する第2の異質ドメインとからなる請求項66のタ ンパク質。 35.初期に選択する親のポテンシャル結合ドメインが、ウシ膵臓トリプシンイ ンヒビターの結合ドメインと少なくとも50%の相同性を有するものである、請 求項3の方法。
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
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US24016088A | 1988-09-02 | 1988-09-02 | |
US240,160 | 1988-09-02 |
Publications (2)
Publication Number | Publication Date |
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JPH04502700A true JPH04502700A (ja) | 1992-05-21 |
JP3771253B2 JP3771253B2 (ja) | 2006-04-26 |
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Application Number | Title | Priority Date | Filing Date |
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JP51008789A Expired - Lifetime JP3771253B2 (ja) | 1988-09-02 | 1989-09-01 | 新規な結合タンパク質の生成と選択 |
Country Status (8)
Country | Link |
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EP (6) | EP1026240A3 (ja) |
JP (1) | JP3771253B2 (ja) |
AT (1) | ATE151110T1 (ja) |
AU (1) | AU4308689A (ja) |
CA (1) | CA1340288C (ja) |
DE (2) | DE768377T1 (ja) |
IL (1) | IL91501A (ja) |
WO (1) | WO1990002809A1 (ja) |
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JP2010254694A (ja) * | 1999-01-04 | 2010-11-11 | Dyax Corp | ヒト第viii因子および第viii因子様タンパク質に対する結合分子 |
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US4479895A (en) | 1982-05-05 | 1984-10-30 | E. I. Du Pont De Nemours And Company | Immunoglobulin half-molecules and process for producing hybrid antibodies |
US4470925A (en) | 1982-05-05 | 1984-09-11 | E. I. Du Pont De Nemours And Company | Immunoglobulin half-molecules and process for producing hybrid antibodies |
GB8529014D0 (en) * | 1985-11-25 | 1986-01-02 | Biogen Nv | Enhanced secretion of heterologous proteins |
US4704692A (en) | 1986-09-02 | 1987-11-03 | Ladner Robert C | Computer based system and method for determining and displaying possible chemical structures for converting double- or multiple-chain polypeptides to single-chain polypeptides |
EP0281604B1 (en) | 1986-09-02 | 1993-03-31 | Enzon Labs Inc. | Single polypeptide chain binding molecules |
WO1988006601A1 (en) | 1987-03-02 | 1988-09-07 | Genex Corporation | Gene repressors |
DE3852304T3 (de) | 1987-03-02 | 1999-07-01 | Enzon Lab Inc | Organismus als Träger für "Single Chain Antibody Domain (SCAD)". |
EP0285123A3 (en) * | 1987-04-03 | 1989-02-01 | Stabra AG | A method for complete mutagenesis of nucleic acids |
DE768377T1 (de) | 1988-09-02 | 1998-01-02 | Dyax Corp | Herstellung und Auswahl von Rekombinantproteinen mit verschiedenen Bindestellen |
-
1989
- 1989-09-01 DE DE0768377T patent/DE768377T1/de active Pending
- 1989-09-01 WO PCT/US1989/003731 patent/WO1990002809A1/en not_active Application Discontinuation
- 1989-09-01 IL IL91501A patent/IL91501A/en not_active IP Right Cessation
- 1989-09-01 EP EP00106289A patent/EP1026240A3/en not_active Withdrawn
- 1989-09-01 EP EP07122683A patent/EP1892296A1/en not_active Withdrawn
- 1989-09-01 DE DE68927933T patent/DE68927933T2/de not_active Expired - Fee Related
- 1989-09-01 EP EP89910702A patent/EP0436597B1/en not_active Revoked
- 1989-09-01 CA CA000610176A patent/CA1340288C/en not_active Expired - Lifetime
- 1989-09-01 EP EP05000796A patent/EP1541682A3/en not_active Withdrawn
- 1989-09-01 AU AU43086/89A patent/AU4308689A/en not_active Abandoned
- 1989-09-01 EP EP96112867A patent/EP0768377A1/en not_active Ceased
- 1989-09-01 JP JP51008789A patent/JP3771253B2/ja not_active Expired - Lifetime
- 1989-09-01 AT AT89910702T patent/ATE151110T1/de not_active IP Right Cessation
- 1989-09-01 EP EP08105351A patent/EP1997891A1/en not_active Withdrawn
Cited By (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
JP2010254694A (ja) * | 1999-01-04 | 2010-11-11 | Dyax Corp | ヒト第viii因子および第viii因子様タンパク質に対する結合分子 |
JP2013079272A (ja) * | 1999-01-04 | 2013-05-02 | Dyax Corp | ヒト第viii因子および第viii因子様タンパク質に対する結合分子 |
JP2015517464A (ja) * | 2012-05-01 | 2015-06-22 | フェニックス インク. | 組み換え熱帯熱マラリア原虫スポロゾイト周囲タンパク質を精製するプロセス |
Also Published As
Publication number | Publication date |
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EP1541682A2 (en) | 2005-06-15 |
EP0436597B1 (en) | 1997-04-02 |
DE68927933T2 (de) | 1997-08-14 |
DE768377T1 (de) | 1998-01-02 |
IL91501A0 (en) | 1990-04-29 |
AU4308689A (en) | 1990-04-02 |
EP1026240A3 (en) | 2004-04-07 |
ATE151110T1 (de) | 1997-04-15 |
EP0436597A4 (en) | 1992-05-20 |
EP0768377A1 (en) | 1997-04-16 |
EP1892296A1 (en) | 2008-02-27 |
EP1541682A3 (en) | 2005-07-06 |
EP1997891A1 (en) | 2008-12-03 |
DE68927933D1 (de) | 1997-05-07 |
WO1990002809A1 (en) | 1990-03-22 |
JP3771253B2 (ja) | 2006-04-26 |
EP0436597A1 (en) | 1991-07-17 |
EP1026240A2 (en) | 2000-08-09 |
CA1340288C (en) | 1998-12-29 |
IL91501A (en) | 1998-03-10 |
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