Classifications

• • C—CHEMISTRY; METALLURGY
  • C07—ORGANIC CHEMISTRY
  • C07K—PEPTIDES
  • C07K16/00—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies
  • C07K16/18—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies against material from animals or humans
  • C07K16/28—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
  • C07K16/2851—Immunoglobulins [IG], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the lectin superfamily, e.g. CD23, CD72
• • A—HUMAN NECESSITIES
  • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
  • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
  • A61K39/00—Medicinal preparations containing antigens or antibodies
  • A61K39/395—Antibodies; Immunoglobulins; Immune serum, e.g. antilymphocytic serum
  • A61K39/39533—Antibodies; Immunoglobulins; Immune serum, e.g. antilymphocytic serum against materials from animals
  • A61K39/3955—Antibodies; Immunoglobulins; Immune serum, e.g. antilymphocytic serum against materials from animals against proteinaceous materials, e.g. enzymes, hormones, lymphokines
• • A—HUMAN NECESSITIES
  • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
  • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
  • A61P1/00—Drugs for disorders of the alimentary tract or the digestive system
  • A61P1/16—Drugs for disorders of the alimentary tract or the digestive system for liver or gallbladder disorders, e.g. hepatoprotective agents, cholagogues, litholytics
• • A—HUMAN NECESSITIES
  • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
  • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
  • A61P13/00—Drugs for disorders of the urinary system
  • A61P13/12—Drugs for disorders of the urinary system of the kidneys
• • A—HUMAN NECESSITIES
  • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
  • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
  • A61P35/00—Antineoplastic agents
• • A—HUMAN NECESSITIES
  • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
  • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
  • A61P35/00—Antineoplastic agents
  • A61P35/02—Antineoplastic agents specific for leukemia
• • A—HUMAN NECESSITIES
  • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
  • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
  • A61P35/00—Antineoplastic agents
  • A61P35/04—Antineoplastic agents specific for metastasis
• • A—HUMAN NECESSITIES
  • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
  • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
  • A61P37/00—Drugs for immunological or allergic disorders
  • A61P37/02—Immunomodulators
  • A61P37/04—Immunostimulants
• • C—CHEMISTRY; METALLURGY
  • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
  • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
  • C12N5/00—Undifferentiated human, animal or plant cells, e.g. cell lines; Tissues; Cultivation or maintenance thereof; Culture media therefor
  • C12N5/06—Animal cells or tissues; Human cells or tissues
  • C12N5/0602—Vertebrate cells
  • C12N5/0634—Cells from the blood or the immune system
  • C12N5/0636—T lymphocytes
• • C—CHEMISTRY; METALLURGY
  • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
  • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
  • C12N5/00—Undifferentiated human, animal or plant cells, e.g. cell lines; Tissues; Cultivation or maintenance thereof; Culture media therefor
  • C12N5/06—Animal cells or tissues; Human cells or tissues
  • C12N5/0602—Vertebrate cells
  • C12N5/0634—Cells from the blood or the immune system
  • C12N5/0646—Natural killers cells [NK], NKT cells
• • A—HUMAN NECESSITIES
  • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
  • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
  • A61K39/00—Medicinal preparations containing antigens or antibodies
  • A61K2039/505—Medicinal preparations containing antigens or antibodies comprising antibodies
• • C—CHEMISTRY; METALLURGY
  • C07—ORGANIC CHEMISTRY
  • C07K—PEPTIDES
  • C07K2317/00—Immunoglobulins specific features
  • C07K2317/20—Immunoglobulins specific features characterized by taxonomic origin
  • C07K2317/24—Immunoglobulins specific features characterized by taxonomic origin containing regions, domains or residues from different species, e.g. chimeric, humanized or veneered
• • C—CHEMISTRY; METALLURGY
  • C07—ORGANIC CHEMISTRY
  • C07K—PEPTIDES
  • C07K2317/00—Immunoglobulins specific features
  • C07K2317/30—Immunoglobulins specific features characterized by aspects of specificity or valency
  • C07K2317/31—Immunoglobulins specific features characterized by aspects of specificity or valency multispecific
• • C—CHEMISTRY; METALLURGY
  • C07—ORGANIC CHEMISTRY
  • C07K—PEPTIDES
  • C07K2317/00—Immunoglobulins specific features
  • C07K2317/30—Immunoglobulins specific features characterized by aspects of specificity or valency
  • C07K2317/34—Identification of a linear epitope shorter than 20 amino acid residues or of a conformational epitope defined by amino acid residues
• • C—CHEMISTRY; METALLURGY
  • C07—ORGANIC CHEMISTRY
  • C07K—PEPTIDES
  • C07K2317/00—Immunoglobulins specific features
  • C07K2317/50—Immunoglobulins specific features characterized by immunoglobulin fragments
  • C07K2317/51—Complete heavy chain or Fd fragment, i.e. VH + CH1
• • C—CHEMISTRY; METALLURGY
  • C07—ORGANIC CHEMISTRY
  • C07K—PEPTIDES
  • C07K2317/00—Immunoglobulins specific features
  • C07K2317/50—Immunoglobulins specific features characterized by immunoglobulin fragments
  • C07K2317/515—Complete light chain, i.e. VL + CL
• • C—CHEMISTRY; METALLURGY
  • C07—ORGANIC CHEMISTRY
  • C07K—PEPTIDES
  • C07K2317/00—Immunoglobulins specific features
  • C07K2317/50—Immunoglobulins specific features characterized by immunoglobulin fragments
  • C07K2317/56—Immunoglobulins specific features characterized by immunoglobulin fragments variable (Fv) region, i.e. VH and/or VL
• • C—CHEMISTRY; METALLURGY
  • C07—ORGANIC CHEMISTRY
  • C07K—PEPTIDES
  • C07K2317/00—Immunoglobulins specific features
  • C07K2317/50—Immunoglobulins specific features characterized by immunoglobulin fragments
  • C07K2317/56—Immunoglobulins specific features characterized by immunoglobulin fragments variable (Fv) region, i.e. VH and/or VL
  • C07K2317/565—Complementarity determining region [CDR]
• • C—CHEMISTRY; METALLURGY
  • C07—ORGANIC CHEMISTRY
  • C07K—PEPTIDES
  • C07K2317/00—Immunoglobulins specific features
  • C07K2317/70—Immunoglobulins specific features characterized by effect upon binding to a cell or to an antigen
  • C07K2317/76—Antagonist effect on antigen, e.g. neutralization or inhibition of binding
• • C—CHEMISTRY; METALLURGY
  • C07—ORGANIC CHEMISTRY
  • C07K—PEPTIDES
  • C07K2317/00—Immunoglobulins specific features
  • C07K2317/90—Immunoglobulins specific features characterized by (pharmaco)kinetic aspects or by stability of the immunoglobulin
  • C07K2317/92—Affinity (KD), association rate (Ka), dissociation rate (Kd) or EC50 value
• • C—CHEMISTRY; METALLURGY
  • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
  • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
  • C12N2501/00—Active agents used in cell culture processes, e.g. differentation
  • C12N2501/50—Cell markers; Cell surface determinants
  • C12N2501/59—Lectins

Definitions

• antibodies that specifically bind to Gal3 or“anti-Gal3 antibody”) and disrupt an interaction between Gal3 and TIM-3 and promote T cell or Natural Killer (NK) cell proliferation.
• methods of utilizing the antibody to elicit an immune response and methods of treatment are also disclosed herein.
• methods of reducing fibrosis or propensity thereof in a tissue by contacting the tissue with an antibody that specifically binds to Gal3.
• Galectin-3 is a lectin, or a carbohydrate-binding protein, with specificity towards beta-galactosides.
• Gal3 is expressed and can be found in the nucleus, cytoplasm, cell surface, and in the extracellular space.
• T-cell immunoglobulin and mucin-domain continaing-3 is a protein expressed on immune cells such as T cells, dendritic cells, NK cells, and monocytes.
• antibodies that specifically bind to Gal3 or“anti-Gal3 antibody”) and disrupt an interaction between Gal3 and TIM-3.
• antibodies that specifically bind to Gal3 and promote T cell or Natural Killer cell proliferation are also disclosed herein.
• a method of inducing immune activation comprising:
• the immune activation comprises a proliferation of CD3+ T lymphocytes, CD4+ T helper cells, CD8+ cytotoxic T cells, Natural Killer cells, or a combination thereof.
• a method of promoting T cell or Natural Killer (NK) cell proliferation comprising:
• a method of inducing immune activation comprising:
• Gal3-TIM-3 interaction is reduced to less than 70%, less than 60%, less than 59%, less than 50%, less than 40%, less than 34%, less than 30%, less than 20%, less than 14%, less than 10%, less than 7%, less than 5%, less than 4%, or less than 1%.
• TILs tumor-infiltrating lymphocytes
• the plurality of cells further comprises CD3+ T lymphocytes, CD4+ T helper cells, CD8+ cytotoxic T cells, or a combination thereof.
• the antibody comprises a monovalent Fab', a divalent Fab2, a single-chain variable fragment (scFv), a diabody, a minibody, a nanobody, a single-domain antibody (sdAb), or a camelid antibody or binding fragment thereof.
• the additional therapeutic agent comprises a chemotherapeutic agent, targeted therapeutic agent, hormonal therapeutic agent, or a stem cell-based therapeutic agent.
• a method of reducing fibrosis or propensity thereof in a tissue comprising: contacting the tissue with an antibody that specifically binds Gal3 antibody under conditions such that expression level of a fibrosis biomarker is reduced in the tissue.
• tissue further comprises a TIM-3 expressing cell.
• the at least one fibrosis biomarker comprises a-smooth muscle actin (a-SMA).
• the at least one fibrosis biomarker comprises a-smooth muscle actin (a-SMA) and fibronectin.
• tissue is a kidney tissue or liver tissue.
• tissue is selected from a group consisting of a liver tissue, a kidney tissue, a skin tissue, a lung tissue, a heart tissue, a brain tissue, an intestine tissue, a bone marrow tissue, and a soft tissue.
• the collagen-producing cell is a fibroblast cell.
• the fibroblast cell is activated by a fibrogenic cytokine.
• the antibody comprises a monovalent Fab', a divalent Fab2, a single-chain variable fragment (scFv), a diabody, a minibody, a nanobody, a single-domain antibody (sdAb), or a camelid antibody or binding fragment thereof.
• the anti-Gal3 antibody for use in the treatment of an immune related disease of alternative 105, wherein the anti-Gal3 antibody inhibits the interaction between Gal3 and TIM-
• the anti-Gal3 antibody for use in the treatment of an immune related disease of alternative 105 or 106, wherein the activation of the immune system comprises proliferation of CD3+ T lymphocytes, CD4+ T helper cells, CD8+ cytotoxic T cells, NK cells, Ml macrophages, or a combination thereof.
• the anti-Gal3 antibody for use in the treatment of an immune related disease according to any one of alternatives 105-107, wherein the activation of the immune system comprises a reduction in M2 macrophages.
• the anti-Gal3 antibody for use in the treatment of an immune related disease according to any one of alternatives 105-108, wherein the immune related disease is cancer.
• the anti-Gal3 antibody for use in the treatment of an immune related disease of alternative 109, wherein the cancer is breast cancer, colorectal cancer, kidney cancer, liver cancer, lung cancer, or a hematological malignancy.
• the anti-Gal3 antibody for use in the treatment of an immune related disease of alternative 109 or 110, wherein the cancer is a metastatic cancer, a relapsed cancer, or a refractory cancer.
• the anti-Gal3 antibody for use in the treatment of an immune related disease according to any one of alternatives 109-111, wherein the anti-Gal3 antibody is administered in combination with an additional therapeutic agent, such as an immune checkpoint modulator, chemotherapeutic agent, targeted therapeutic agent, hormonal therapeutic agent, stem cell- based therapeutic agent, surgery, or radiation therapy.
• an additional therapeutic agent such as an immune checkpoint modulator, chemotherapeutic agent, targeted therapeutic agent, hormonal therapeutic agent, stem cell- based therapeutic agent, surgery, or radiation therapy.
• the anti-Gal3 antibody for use in the treatment of an immune related disease according to any one of alternatives 105-108, wherein the immune related disease is fibrosis, and the anti-Gal3 antibody results in reduced accumulation of extracellular matrix proteins in a tissue.
• the anti-Gal3 antibody for use in the treatment of an immune related disease of alternative 113, wherein the extracellular matrix proteins comprises collagen.
• the anti-Gal3 antibody for use in the treatment of an immune related disease of alternative 113 or 114, wherein the expression level of at least one fibrosis biomarker in a subject is reduced, and wherein the at least one fibrosis biomarker comprises a-SMA, fibronectin, or both.
• the anti-Gal3 antibody for use in the treatment of an immune related disease according to any one of alternatives 113-115, wherein the tissue is selected from a group consisting of a liver tissue, a kidney tissue, a skin tissue, a lung tissue, a heart tissue, a brain tissue, an intestine tissue, a bone marrow tissue, and a soft tissue.
• the anti-Gal3 antibody for use in the treatment of an immune related disease according to any one of alternatives 113-116, wherein the fibrosis is renal fibrosis, liver fibrosis, lung fibrosis, cardiac fibrosis, or vascular fibrosis. In some embodiments, this can be IV or subcutaneous administration.
• the anti-Gal3 antibody for use in the treatment of an immune related disease according to any one of alternatives 105-117, wherein the anti-Gal3 antibody is formulated for systemic administration, parenteral administration, intravenous administration, or subcutaneous administration.
• anti-Gal3 antibody for use in the treatment of an immune related disease according to any one of alternatives 105-118, wherein the subject is a human.
• the anti-Gal3 antibody is selected from the group consisting of one or more of 2D10.2B2, 3B 11.2G2, 4A11.2B5, 4G2.2G6, 6H6.2D6, 7D8.2D8, 12G5.D7, 13A12.2E5, 13G4.2F8, 13H12.2F8, 14H10.2C9, 15F10.2D6, 15G7.2A7, 19B5.2E6, 19D9.2E5, 20D11.2C6, 20H5.A3, 23H9.2E4, 24D12.2H9, 846.1F5, 846.2H3, 846T.1H2, 9H2.2H10, IMT001-4, IMT006-1, IMT006-5, IMT006-8, and mIMT001.
• the anti-Gal3 antibody is an antibody having 1, 2, 3, 4, 5, or 6 CDRs from the CDRs within one or more of 2D10.2B2, 3B 11.2G2, 4A11.2B5, 4G2.2G6, 6H6.2D6, 7D8.2D8, 12G5.D7, 13A12.2E5, 13G4.2F8, 13H12.2F8, 14H10.2C9, 15F10.2D6, 15G7.2A7, 19B5.2E6, 19D9.2E5, 20D11.2C6, 20H5.A3, 23H9.2E4, 24D12.2H9, 846.1F5, 846.2H3, 846T.1H2, 9H2.2H10, IMT001-4, IMT006-1, IMT006-5, IMT006-8, and mIMT001.
• the anti-Gal3 antibody for use in the treatment of an immune related disease according to any one of alternatives 105-119, wherein the anti-Gal3 antibody is selected from the group consisting of 2D10.2B2, 3B 11.2G2, 4A11.2B5, 4G2.2G6, 6H6.2D6, 7D8.2D8, 12G5.D7, 13A12.2E5, 13G4.2F8, 13H12.2F8, 14H10.2C9, 15F10.2D6, 15G7.2A7, 19B5.2E6, 19D9.2E5, 20D11.2C6, 20H5.A3, 23H9.2E4, 24D12.2H9, 846.1F5, 846.2H3, 846T.1H2, 9H2.2H10, IMT001-4, IMT006-1, IMT006-5, IMT006-8, and mIMT001.
• anti-Gal3 antibody for use in the treatment of an immune related disease according to any one of alternatives 105-119, wherein the anti-Gal3 antibody is IMT001-4, IMT006-1, IMT006-5, or IMT006-8.
• An anti-GAL3 antibody comprising at least the HCDR3 within any one of the antibodies of FIGs. 35A-36B.
• the anti-GAL3 antibody of alternative 124 further comprising all 3 HCDRs within any one of the antibodies of FIGs. 35A-36B.
• the anti-GAL3 antibody of alternative 125 further comprising all 3 LCDRs within any one of the antibodies of FIGs. 35A-36B.
• An anti-GAL3 antibody that comprises any one of the heavy chain sequences within FIG. 36A, or a sequence that is at least 80% identical thereto.
• An anti-GAL3 antibody that comprises any one of the light chain sequences within FIG. 36B or a sequence that is at least 80% identical thereto.
• the anti-GAL3 antibody of alternative 128 that further comprises any one of the heavy chain sequences within FIG. 36A, or a sequence that is at least 80% identical thereto. 130.
• An anti-GAL3 antibody that comprises at least one of the CDRs from FIG. 38.
• An anti-GAL3 antibody that comprises at least two of the CDRs from FIG. 38.
• An anti-GAL3 antibody that comprises at least three of the CDRs from FIG. 38.
• An anti-GAL3 antibody that comprises at least four of the CDRs from FIG. 38.
• An anti-GAL3 antibody that comprises at least five of the CDRs from FIG. 38.
• An anti-GAL3 antibody that comprises six of the CDRs from FIG. 38, and wherein all six are from a single bin.
• An anti-GAL3 antibody that comprises six of the CDRs from FIG.38, or a set of 6 CDRs which, across their entire sequence, is at least 80% identical thereto.
• Figs. 1A-C illustrate the results of co-immunoprecipitation assay indicating that human Gal3 (hGal3) specifically pulled down human TIM-3 (hTIM-3).
• Fig. 1A shows TIM-3 expression in the 293T cells co-transfected with a plasmid encoding a HA-tagged hTIM-3 and a plasmid encoding hGal3, hGal9, or hCEACAMl.
• Fig. IB shows expression of hGal9, hGal3, or hCEACAMl.
• Fig. 1C shows that hGal3, but not CEACAM1, pulled down the-HA-tagged hTIM-3 in the co-transfected 293T cells.
• the results also show that human Gal9 (hGal9) pulled down hTIM-3, but the pull down was accompanied with protein aggregation (Fig. IB), indicating the binding between hGal9 and hTIM-3 might be non-specific.
• Fig. 2 shows the results of pull-down assays using a fusion protein composed of a hTIM-3 extracellular domain fused with the Fc portion of hlgG (hTIM-3 Fc). The results show that the binding between Gal3 and TIM-3 was specific. As shown in this figure, hTIM-3 Fc, but not hFc or hPDL1 Fc, pulled down the over-expressed, Flag-tagged hGal3 protein from 293T cells.
• Fig. 3 shows the results of cell adhesion assay indicating the specific interaction between hGal3 and hTIM-3.
• A20 cells expressing hGal3 A20 Gal3 cells
• hVISTA Fc human VISTA Fc
• hTIM-3 Fc a significantly higher number of A20 PDL1 cells were able to adhere to plates coated with hPDL1 Fc than to plates coated with human VISTA Fc (hVISTA Fc) or plates coated with hTIM-3 Fc.
• Fig. 4A shows live A20 cells (the peak on the left) and dead A20 cells (the peak on the right) by flow cytometry analysis.
• Figs. 4B-C show the results of flow cytometry analysis of the live cells (Fig. 4B) and dead cells (Fig. 4C) that are stained with anti hFc APC antibody.
• group 1 A20 Gal3 cells were incubated without mTIM-3 Fc protein as control; in group 2, A20 Gal3 cells were incubated with mTIM-3 Fc protein; in groups 3, 4, 5, in addition to mTIM-3 Fc protein, anti-mouse TIM-3 polyclonal antibody (R&D System, Minneapolis, MN) (group 3), monoclonal antibody RMT3-23 (Bio X cell, West Lebanon, NH) (group 4), monoclonal antibody 215015 (R&D Systems) (group 5), were also added to test if these antibodies could block Gal3 and Tim3 binding.
• Figs. 5A-C show the ELISA results indicating the specific binding of Gal3 on TIM-3.
• plates were coated with mGal3 at 10 ug/ml, mGal3 polyclonal antibody (mGal3 pAb) and monoclonal antibody IMT001, but not monoclonal antibody M3/38, were shown to block the interaction between Gal3 and Tim3.
• Fig. 5B shows that lactose blocked Gal9, but not Gal3 from binding to TIM-3, indicating that the binding between Gal3 and Tim3 is sugar-independent binding.
• Fig. 5C shows that antibody RMT3-23 blocked phosphatidylserine (PS), but not Gal3 from binding to TIM-3, indicating the epitopes on TIM- 3 that bind to Gal3 is different from those that bind to PS.
• PS phosphatidylserine
• Figs. 6A-B show that over-expressed Gal3 suppressed T cell activation.
• Fig. 6A shows that mouse A20 cell clones #41, #31, and #15 overexpress Gal3.
• Fig. 6B shows that when these cells were mixed with mouse DO11.10 T cells, much less IL-2 was produced as compared to parental A20 cells.
• Figs. 7A-E show that Gal3 antibody has anti-tumor activity in a lung metastasis model.
• Fig. 7A shows high expression of Gal3 on B 16F10 tumor cells.
• Fig. 7B shows representative images of the whole lung from three treated groups.
• Fig. 7C shows numbers of metastatic colonies on surface of the left lung lobe (Mean ⁇ SEM).
• Fig. 7D and Fig. 7E show lung weight and body weight of different treatment groups (Mean ⁇ SEM). As compared to animals that were treated with the isotype control, animals treated with the monoclonal anti-human Gal3 antibody showed significant reduction of tumor number (p ⁇ 0.01) (Fig. 7B) and much less tumor burden as indicated by lung weight (p ⁇ 0.05) (Fig. 7D). However, animals treated with PD1 antibody did not show significant reduction of tumor number or burden in this lung metastasis model (p>0.05). Fig. 7E shows that animals treated with either the PD 1 antibody or the Gal3 antibody had similar body weight as the control group, indicating that there were no adverse effects associated with administration of either antibody.
• Figs. 8A-C show the anti-tumor activity of Gal3 antibody in 4T1 orthotopic tumor induced lung metastasis.
• Fig. 8A shows the images of metastasized tumor colonies on the lung of mice that have been implanted with 4T1 cells and then treated with either control antibody (“isotype”) or IMT001. The antibodies were administered intraperitoneally on day 0, 3, 7, 10 and 14 during a period of 30 days. The images were taken at the day 30 when the mice were sacrificed.
• Fig. 8B shows the body weight measurements of these mice during the same period.
• Fig. 8C shows the number of metastasized tumor colonies on the surface of the left lobe of these mice at day 30.
• Fig. 9 shows the tumor growth in mice implanted with Renca tumor cells and treated with Gal3 antibody.
• mice implanted with Renca tumor cells and treated with the isotype control antibody (“iso") mice treated with Gal3 antibody (“IMT001”) showed much reduced tumor size (p ⁇ 0.05), while anti mouse PD-1 antibody 29F had no effects (p>0.05).
• Fig. 10 shows the tumor growth in mice implanted with MC38 colon cancer cells and treated with the anti Gal3 antibody.
• mice implanted with MC38 tumor cells and treated with the isotype control antibody (“iso") mice treated with Gal3 antibody (“IMT001”) showed much reduced tumor size (p ⁇ 0.05).
• Figs. 11 A-D show the results of epitope mapping.
• a peptide array derived from hGal3 protein sequence was synthesized (Fig. 11 A) and dot blotted with anti Gal3 antibody IMT001 (Fig. 11B).
• Peptides 5 and 6 showed good signal, indicating that the anti Gal3 monoclonal antibody, IMT001, can bind to these peptides.
• To further map the binding epitopes of IMT001 on these peptides several shorter peptides derived from these peptide sequences were synthesized (Fig. 11C) and their binding to IMT001 was measured by ELISA (Fig. 11D).
• Peptide with sequence GQAPPGAYPG SEQ ID NO: 28
• Fig. 12 summarizes the number of immune cells from mice implanted with B 16F10 cells that express various lymphocyte markers: CD3, CD4, CD8, CD19, or DX5. These mice have been treated with the isotype control antibody or IMT001.
• Figs. 13A-B show Gal3 expression on tumor associated macrophages in human lung cancer in immunohistochemistry (IHC) assays.
• IHC immunohistochemistry
• IMT001 was used to stain human lung cancer frozen slides to detect Gal3 expression on tumor associated macrophages.
• Fig. 13A shows the results from staining squamous cell carcinoma and Fig. 13B shows the results from staining of adenocarcinoma.
• Figs. 14A-C show that expression of Gal3 was detected on human M2 macrophages (Fig. 14C), but not on Dendritic cells (DC) (Fig. 14A) or Ml macrophages (Fig. 14B).
• Figs. 15A-D show the immune activity of Gal3 antibody (“IMT001”) in mouse macrophage/T cell reaction.
• Fig. 15B shows detection of expression of Gal3 by IHC on mouse macrophage cell line RAW264.7, as compared to control (Fig. 15A).
• Fig. 15C shows the expression of Gal 3 on mouse macrophage cell line by flow cytometry using cells stained with IMT001.
• Fig. 16 illustrates ELISA assessment of GAL3-TIM3 interaction blockade by GAL3 binding antibodies. Results illustrate Gal3-targeted antibodies exhibit differential blockade of Gal3-TIM3 binding. Percent of TIM3-GAL3 binding in the absence of antibody is shown.
• FIGs. 17A-17B illustrate ELISA assessment of anti-GAL3 antibody binding to peptide fragments of GAL3.
• FIG. 17A antibodies mabl, mab3, mab4, and mab5;
• FIG. 17B antibodies mab2, mab3, mab6, and mab7.
• Results illustrate Gal3-targeted antibodies exhibit differential blockade of Gal3-TIM3 binding.
• Fig. 18 illustrates ELISA competitive binding assessment of anti-GAL3 antibody binding to GAL3.
• Results illustrate Gal3-targeted antibodies mabl (801) and mab4 (804), but not mab5 (805) bi-directionally compete for binding to Gal3.
• FIG. 19A-C illustrate biolayer interferometry assessment of anti-Gal3 antibody association and dissociation kinetics with Gal3 (Gal3 binding antibody affinities).
• Fig. 20 illustrates CMV antigen recall assay assessment of GAL3 potentiation of T-cell antigen- specific responsiveness. Results illustrate that Gal-3 targeted antibodies exhibit differential activation of T-cells by CMV-induced antigen recall.
• FIGs. 21A-C illustrate MALDI-MS identification of GAL3 and TIM3 regions mediating the interaction between TIM3 and GAL3. Note that amino acid numeration is based on the mature protein after processing of the signal peptide. Also see Table 2.
• FIG. 21A illustrates potential sequences involved in the binding interface.
• FIG. 21B illustrates potential residues involved in the interaction.
• FIG. 21C illustrates the sequence locations mapped on the respective TIM-3 and Gal3. Note that amino acid numeration is based on the mature protein after processing of the signal peptide.
• Fig. 22 shows a Western blot analysis of fibrosis markers, alpha-smooth muscle actin (a-SMA) and fibronectin, in kidney tissue lysates from male unilateral urethral obstruction (UUO) mice treated for 14 days with IMT001 and mIgG2b (control) antibodies following uretal ligation, or sham treated without antibody treatment.
• GAPDH was used as a loading control.
• Fig. 23 shows a Western blot analysis fibrosis markers, a-SMA and fibronectin in liver tissue lysates from non-obese diabetic and inflammation (N-IF) mice.
• the animals were treated with 40 days of IMT001, an anti-Gal3 antibody and mIgG2b (control) antibody.
• GAPDH was used as a loading control.
• FIG. 24 Galectin-3 targeted antibodies were evaluated for the ability to block the binding of GAL3 and TIM3 by ELISA at 3 mg/mL. Bars represent mean +/- standard deviation.
• FIG. 25 Alignment of GAL3 peptides with ability to bind GAL3-TIM3 blocking GAL3-targted antibodies.
• FIG. 26 Identification of Galectin-3 binding antibody bins by antibody competition. Values represent inhibition as assessed by biolayer interferometry.
• FIG. 27 Humanized anti-GAL3 antibodies were evaluated for blocking of GAL3-TIM3 by ELISA in a titration series. Plotted values represent mean +/- standard deviation.
• FIGs. 28A-D Tumor volumes of mice engrafted with subcutaneous MBT2 tumors and treated with control, IMT001, anti-PD-Ll antibody, or combinations thereof (Fig. 28A), or with control, IMT001, anti-PD-1 antibody, or combinations thereof (Fig. 28C). Plots of tumor volume for anti-PD-Ll (Fig. 28B) or anti-PD-1 (Fig. 28D) represent daily measurements of individual animals.
• FIGs. 29A-D Evaluation of hepatocellular carcinoma formation in normal and STAM-CDAA mice treated with human IgG4 (huIgG4) or IMT001-4 by gross histology (Fig. 29 A) and enumerated (Fig. 29B). Arrows highlight areas with tumors. Hematoxylin and eosin stained sections of liver samples evaluated for tumor formation (Fig. 29C). Arrows highlight areas with tumors. Quantitation of alpha-fetoprotein in serum of STAM-CDAA mice treated with huIgG4 or IMT001-4 (Fig. 29D). Circles indicate mean values per animal, line indicates mean value per group.
• FIGs. 30A-D Hematoxylin and eosin stained sections of livers from MCD mouse model of NASH liver fibrosis treated with isotype control or mIMT001 (Fig. 30A). Image-based quantification of histological findings measuring steatosis, hepatocellular ballooning, lobular inflammation, or NAFLD Activity Score (NAS) (Fig. 30B). Picosirius red staining of liver specimens from mice treated as in (A), (Fig. 30C). Image based-quantification of Sirius red staining (Fig. 30D). Bars represent mean value of 7 animals +/- standard error of the mean.
• FIG. 31A-B Picosirius red staining of liver specimens from choline- deficient L-amino defined high fat diet (CDAA-HFD) STAM model of liver fibrosis treated with isotype control or IMT001-4 (Fig. 31 A). Image based-quantification of Sirius red staining (Fig. 3 IB). Bars represent mean value of 5 fields from each of 7 animals +/- standard error of the mean.
• FIGs. 32A-C Assessment of serum markers of kidney fibrosis KIM-1 and NGAL (Fig. 32A) and picosirius red staining of kidney specimens (Fig. 32B) from mice treated with isotype control, IMT001-4, IMT001-6, or metformin in mouse unilateral ureter obstruction (UUO) model.
• Image-based Picosirius red staining quantification Fig. 32C). Bars represent the mean of triplicate assessments from each of seven animals per group +/- standard error of the mean. Points represent individual animal average picosirius red staining, bar indicates mean group value.
• FIG. 33A-B IHC assessment of Collagen lal (Collal) deposition in kidney specimens treated 1 day after UUO treated with isotype control or mIMT001 (Fig. 33A). Black arrows correspond to areas of fibrotic collagen deposition. Image based quantitation (Fig. 33B). Bars represent mean value of 10 fields from each of 7 animals per group +/- standard error of the mean.
• FIG. 34A-B Masson's trichrome assessment of lung fibrosis in bleomycin- induced lung fibrosis mouse model treated with isotype control or mIMT001 (Fig. 34A). Ashcroft scoring of tissue sections (Fig. 34B). Bars represent the mean of 10 fields from each of 8 animals per group +/- standard error of the mean.
• FIG. 35A depicts some embodiments of the VH CDR regions of various embodiments of anti-GAL3 antibodies.
• any of the method or compositions provided herein can include one or more of the CDRs provided herein, including 1, 2, or 3 of them.
• FIG. 35B depicts some embodiments of the VL CDR regions of various embodiments of anti-GAL3 antibodies.
• any of the method or compositions provided herein can include one or more of the CDRs provided herein, including 1, 2, or 3 of them.
• FIG. 36A depicts some embodiments of the full VH regions of various embodiments of anti-GAL3 antibodies. In some embodiments, any of the methods or compositions provided herein can include any one of these VH regions.
• FIG. 36B depicts some embodiments of the full VL regions of various embodiments of anti-GAL3 antibodies. In some embodiments, any of the methods or compositions provided herein can include any one of these VL regions.
• FIG. 37 depicts some embodiments of various GAL3 antibodies (including full heavy chain or kappa chain sequences).
• any one or more of the VH/VL andor CDRs provided in the other figures can be paired with any one or more of the relevant sequences in FIG. 37 (e.g., IgG4 section or kappa sequence).
• FIG. 38 depicts alignments of some embodiments of the VH CDR or VL CDR regions of various embodiments of anti-Gal3 antibodies.
• any of the methods or compositions provided herein can use any 1, 2, 3, 4, 5, or 6 of the consensus CDRs provided in FIG. 38.
• Galectin-3 (Gal3, GAL3, or Gal-3) is expressed in several cell types and involved in a broad range of physiological and pathological processes, which include cell adhesion, cell activation and chemoattraction, cell cycle, apoptosis, cell growth and differentiation, and tumor progression and metastasis.
• Gal3 expresses on tumors cells and cells in the tumor microenvironment, e.g., tumor-associated macrophages, especially M2 macrophages. Further, it is implicated in the activation of a variety of profibrotic factors that promote fibroblast proliferation and transformation, and mediate collagen production. Furthermore, Gal3 is thought to play a key role in fibrogenesis of various tissues, including liver, kidney, lung, and myocardia.
• TIM-3 is a molecule expressed on immune cells, especially on T cells and can suppress an immune response, e.g., T cell signaling, through the interaction with Gal3.
• the anti-Gal3 antibodies interfere with the interaction between Gal3 and TIM-3 and activate an immune response.
• Tumors are often associated with an immune infiltrate as part of the reactive stroma that is enriched for macrophages.
• Tumor-associated macrophages (TAMs) play an important role in facilitating tumor growth by promoting neovascularization and matrix degradation.
• TAMs Tumor-associated macrophages
• Ml macrophages are known to produce pro-inflammatory cytokines and play an active role in cell destruction, while M2 macrophages primarily scavenge debris and promote angiogenesis and wound repair.
• M2 macrophage population is phenotypically similar to the TAM population that promotes tumor growth and development.
• M2 macrophages in some cases, also express one or more cell surface markers selected from the group consisting of CD206, IL-4r, IL-lra, decoy IL-lrll, IL-lOr, CD23, macrophage scavenging receptors A and B, Ym-1, Ym-2, Low density receptor-related protein 1 (LRP1), IL-6r, CXCRl/2, CD136, CD14, CD la, CDlb, CD93, CD226, (FcyR) and PD-L1.
• LRP1 Low density receptor-related protein 1
• IL-6r CXCRl/2
• CD136 CD14
• CD la CDlb
• CD93 CD226,
• Tissue fibrosis is a progressive debilitating disease characterized by an abundant accumulation of extracellular matrix (ECM) proteins such as collagens and fibronectin, leading to tissue scarring, organ injury, organ function decline, and subsequent organ failure.
• ECM extracellular matrix
• Tissue fibrosis can be located in the kidney, liver, lung, heart, skin, pancreas, intestine, eye, nervous system, joint, tendon, mediastinum, or retroperitoneum.
• features of tissue fibroses comprise epithelial and endothelial injury and dysfunction, abnormal proliferation of myofibroblasts (MFb), smooth muscle cells and stellate cells, and ECM deposition.
• MFb myofibroblasts
• stellate cells smooth muscle cells and stellate cells
• ECM deposition The presence of cytokines, chemokines, growth factors, and angiogenic factors further regulate the activation of the ECM-producing cells during profibrotic process.
• Galectin-3 (Gal3) is known to play an important role in cell proliferation, adhesion, differentiation, angiogenesis, and apoptosis. Further, it is implicated in the activation of a variety of profibrotic factors that promote fibroblast proliferation and transformation, and mediate collagen production. Furthermore, Gal3 is thought to play a key role in fibrogenesis of various tissues, including liver, kidney, lung, and myocardia.
• reducing fibrosis or propensity thereof in a tissue with an anti-Gal3 antibody includes preventing fibrosis from occurring in a normal tissue.
• reducing fibrosis or propensity thereof in a tissue includes slowing down or arresting progression of fibrosis in a fibrotic tissue.
• reducing fibrosis or propensity thereof in a tissue includes reducing the amount of degree of fibrosis in a fibrotic tissue.
• reducing fibrosis or propensity thereof in a tissue includes eliminating fibrosis in a fibrotic tissue.
• By“about” is meant a quantity, level, value, number, frequency, percentage, dimension, size, amount, weight or length that varies by as much as 30, 25, 20, 15, 10, 9, 8, 7, 6, 5, 4, 3, 2 or 1% to a reference quantity, level, value, number, frequency, percentage, dimension, size, amount, weight or length.
• anti-Gal3 antibodies or binding fragments thereof or compositions comprising anti-Gal3 antibodies or binding fragments thereof are provided.
• methods of using the anti-Gal3 antibodies or binding fragments thereof or compositions comprising anti-Gal3 antibodies or binding fragments thereof to block or disrupt an interaction between Gal3 and a TGF-beta receptor either in vitro or in vivo are provided.
• the methods of using the anti-Gal3 antibodies or binding fragments thereof or compositions comprising anti-Gal3 antibodies or binding fragments thereof to block or disrupt an interaction between Gal3 and TIM-3 are used to treat, cure, or prevent a disease or disorder in a subject.
• the disease or disorder is cancer, breast cancer, colorectal cancer, kidney cancer, liver cancer, lung cancer, or a hematologic malignancy.
• the cancer is a metastatic cancer, a relapsed cancer, or a refractory cancer.
• the antibody is administered in combination with an additional therapeutic agent, such as an immune checkpoint inhibitor, a chemotherapeutic agent, targeted therapeutic agent, hormonal therapeutic agent, or stem cell-based therapeutic agent.
• the disease or disorder is fibrosis in a tissue such as a liver tissue, kidney tissue, skin tissue, lung tissue, heart tissue, brain tissue, intestine tissue, bone marrow tissue, or soft tissue.
• the terms“individual(s)”,“subject(s)” and“patient(s)” mean any mammal or bird.
• the mammal is a human.
• the mammal is a non-human, including but not limited to farm animals (e.g. cows, pigs, horses, chickens, etc.), sport animals, pets, primates, dogs, cats, mice and rats. None of the terms require or are limited to situations characterized by the supervision (e.g. constant or intermittent) of a health care worker (e.g. a doctor, a registered nurse, a nurse practitioner, a physician's assistant, an orderly or a hospice worker).
• a health care worker e.g. a doctor, a registered nurse, a nurse practitioner, a physician's assistant, an orderly or a hospice worker.
• polypeptide As used herein, the terms“polypeptide”,“peptide”, and“protein” are used interchangeably herein to refer to polymers of amino acids of any length.
• the polymer may be linear, cyclic, or branched, it may comprise modified amino acids, and it may be interrupted by non-amino acids.
• the terms also encompass amino acid polymers that have been modified, for example, via sulfation, glycosylation, lipidation, acetylation, phosphorylation, iodination, methylation, oxidation, proteolytic processing, phosphorylation, prenylation, racemization, selenylation, transfer- RN A mediated addition of amino acids to proteins such as arginylation, ubiquitination, or any other manipulation, such as conjugation with a labeling component.
• amino acid refers to either natural and/or unnatural or synthetic amino acids, including glycine and both the D or L optical isomers, and amino acid analogs and peptidomimetics.
• a polypeptide or amino acid sequence“derived from” a designated protein refers to the origin of the polypeptide.
• the polypeptide has an amino acid sequence that is essentially identical to that of a polypeptide encoded in the sequence, or a portion thereof wherein the portion consists of at least 10-20 amino acids, or at least 20-30 amino acids, or at least 30-50 amino acids, or which is immunologic ally identifiable with a polypeptide encoded in the sequence.
• This terminology also includes a polypeptide expressed from a designated nucleic acid sequence.
• antibody is intended to include any polypeptide chain-containing molecular structure with a specific shape that fits to and recognizes an epitope, where one or more non-covalent binding interactions stabilize the complex between the molecular structure and the epitope.
• Antibodies utilized in the present invention may be polyclonal antibodies, although monoclonal antibodies are preferred because they may be reproduced by cell culture or recombinantly and can be modified to reduce their antigenicity.
• immunoglobulin fragments or“binding fragments” comprising the epitope binding site (e.g., Fab', F(ab')2, single-chain variable fragment (scFv), diabody, minibody, nanobody, single- domain antibody (sdAb), or other fragments) are useful as antibody moieties in the present invention.
• Such antibody fragments may be generated from whole immunoglobulins by ricin, pepsin, papain, or other protease cleavage.
• Minimal immunoglobulins may be designed utilizing recombinant immunoglobulin techniques.
• Fv immunoglobulins for use in the present invention may be produced by linking a variable light chain region to a variable heavy chain region via a peptide linker (e.g., poly-glycine or another sequence which does not form an alpha helix or beta sheet motif).
• a peptide linker e.g., poly-glycine or another sequence which does not form an alpha helix or beta sheet motif.
• Nanobodies or single-domain antibodies can also be derived from alternative organisms, such as dromedaries, camels, llamas, alpacas, or sharks.
• antibodies can be conjugates, e.g. pegylated antibodies, drug, radioisotope, or toxin conjugates.
• Monoclonal antibodies directed against a specific epitope, or combination of epitopes will allow for the targeting and/or depletion of cellular populations expressing the marker.
• Various techniques can be utilized using monoclonal antibodies to screen for cellular populations expressing the marker(s), and include magnetic separation using antibody-coated magnetic beads, "panning" with antibody attached to a solid matrix (i.e., plate), and flow cytometry (e.g. U.S. Pat. No. 5,985,660, hereby expressly incorporated by reference in its entirety).
• non-human antibodies are hybrid immunoglobulins, immunoglobulin chains or fragments thereof which contain minimal sequence derived from non-human immunoglobulin.
• variable region of an antibody refers to the variable region of the antibody light chain or the variable region of the antibody heavy chain, either alone or in combination.
• variable regions of the heavy and light chains each consist of four framework regions (FRs) connected by three complementarity determining regions (CDRs) also known as hypervariable regions, and contribute to the formation of the antigen binding site of antibodies.
• FRs framework regions
• CDRs complementarity determining regions
• variants of a subject variable region are desired, particularly with substitution in amino acid residues outside of a CDR region (i.e., in the framework region), appropriate amino acid substitution, preferably, conservative amino acid substitution, can be identified by comparing the subject variable region to the variable regions of other antibodies which contain CDR1 and CDR2 sequences in the same canonical class as the subject variable region (Chothia and Lesk, J Mol Biol 196(4): 901-917, 1987).
• definitive delineation of a CDR and identification of residues comprising the binding site of an antibody is accomplished by solving the structure of the antibody and/or solving the structure of the antibody-ligand complex. In some embodiments, that can be accomplished by any of a variety of techniques known to those skilled in the art, such as X-ray crystallography. In some embodiments, various methods of analysis can be employed to identify or approximate the CDR regions. In some embodiments, various methods of analysis can be employed to identify or approximate the CDR regions. Examples of such methods include, but are not limited to, the Rabat definition, the Chothia definition, the IMGT approach (Lefranc et al, 2003) Dev Comp Immunol. 27:55-77), computational programs such as Paratome (Kunik et al., 2012, Nucl Acids Res. W521-4), the AbM definition, and the conformational definition.
• the Kabat definition is a standard for numbering the residues in an antibody and is typically used to identify CDR regions. See, e.g., Johnson & Wu, 2000, Nucleic Acids Res., 28: 214-8.
• the Chothia definition is similar to the Kabat definition, but the Chothia definition takes into account positions of certain structural loop regions. See, e.g., Chothia et al, 1986, J. Mol. Biol., 196: 901-17; Chothia et al, 1989, Nature, 342: 877-83.
• the AbM definition uses an integrated suite of computer programs produced by Oxford Molecular Group that model antibody structure.
• the AbM definition models the tertiary structure of an antibody from primary sequence using a combination of knowledge databases and ab initio methods, such as those described by Samudrala et al, 1999, "Ab Initio Protein Structure Prediction Using a Combined Hierarchical Approach,” in PROTEINS, Structure, Function and Genetics Suppl, 3: 194-198.
• the contact definition is based on an analysis of the available complex crystal structures.
• CDRs In another approach, referred to herein as the "conformational definition" of CDRs, the positions of the CDRs may be identified as the residues that make enthalpic contributions to antigen binding. See, e.g., Makabe et al, 2008, Journal of Biological Chemistry, 283: 1156- 1166. Still other CDR boundary definitions may not strictly follow one of the above approaches but will nonetheless overlap with at least a portion of the Kabat CDRs, although they may be shortened or lengthened in light of prediction or experimental findings that particular residues or groups of residues do not significantly impact antigen binding.
• a CDR may refer to CDRs defined by any approach known in the art, including combinations of approaches. The methods used herein may utilize CDRs defined according to any of these approaches. In some embodiments containing more than one CDR, the CDRs may be defined in accordance with any of Kabat, Chothia, extended, IMGT, Paratome, AbM, and/or conformational definitions, or a combination of any of the foregoing. In some embodiments, the residue number of a variable region is numbered using the IMGT numbering system. In the sequences provided herein, the CDRs are mapped according to IMGT (https:// world wide web. Ebi .
• a "constant region" of an antibody refers to the constant region of the antibody light chain or the constant region of the antibody heavy chain, either alone or in combination.
• the term "compete,” as used herein with regard to an antibody, means that a first antibody, or an antigen-binding portion thereof, binds to an epitope in a manner sufficiently similar to the binding of a second antibody, or an antigen-binding portion thereof, such that the result of binding of the first antibody with its cognate epitope is detectably decreased in the presence of the second antibody compared to the binding of the first antibody in the absence of the second antibody.
• the alternative, where the binding of the second antibody to its epitope is also detectably decreased in the presence of the first antibody can, but need not be the case. That is, a first antibody can inhibit the binding of a second antibody to its epitope without that second antibody inhibiting the binding of the first antibody to its respective epitope.
• each antibody detectably inhibits the binding of the other antibody with its cognate epitope or ligand, whether to the same, greater, or lesser extent, the antibodies are said to "cross -compete" with each other for binding of their respective epitope(s).
• Both competing and cross-competing antibodies are encompassed by the present invention. Regardless of the mechanism by which such competition or cross-competition occurs (e.g., steric hindrance, conformational change, or binding to a common epitope, or portion thereof), the skilled artisan would appreciate, based upon the teachings provided herein, that such competing and/or cross-competing antibodies are encompassed and can be useful for the methods disclosed herein.
• An antibody that "preferentially binds" or “specifically binds” (used interchangeably herein) to an epitope is a term well understood in the art, and methods to determine such specific or preferential binding are also well known in the art.
• a molecule is said to exhibit "specific binding” or “preferential binding” if it reacts or associates more frequently, and/or more rapidly, and/or with greater duration and/or with greater affinity with a particular cell or substance than it does with alternative cells or substances.
• An antibody “specifically binds” or “preferentially binds” to a target if it binds with greater affinity, and/or avidity, and/or more readily, and/or with greater duration than it binds to other substances.
• an antibody that specifically or preferentially binds to a CFD epitope is an antibody that binds this epitope with greater affinity, and/or avidity, and/or more readily, and/or with greater duration than it binds to other CFD epitopes or non-CFD epitopes. It is also understood by reading this definition that, for example, an antibody (or moiety or epitope) that specifically or preferentially binds to a first target may or may not specifically or preferentially bind to a second target. As such, “specific binding” or “preferential binding” does not necessarily require (although it can include) exclusive binding. Generally, but not necessarily, reference to binding means preferential binding.
• substantially pure refers to material which is at least 50% pure (i.e., free from contaminants), more preferably, at least 90% pure, more preferably, at least 95% pure, yet more preferably, at least 98% pure, and most preferably, at least 99% pure.
• a "host cell” includes an individual cell or cell culture that can be or has been a recipient for vector(s) for incorporation of polynucleotide inserts.
• Host cells include progeny of a single host cell, and the progeny may not necessarily be completely identical (in morphology or in genomic DNA complement) to the original parent cell due to natural, accidental, or deliberate mutation.
• a host cell includes cells transfected in vivo with a polynucleotide(s) of this invention.
• the term "Fc region” is used to define a C-terminal region of an immunoglobulin heavy chain.
• the "Fc region” may be a native sequence Fc region or a variant Fc region.
• the human IgG heavy chain Fc region is usually defined to stretch from an amino acid residue at position Cys226, or from Pro230, to the carboxyl-terminus thereof.
• the numbering of the residues in the Fc region is that of the EU index as in Kabat. Kabat et al., Sequences of Proteins of Immunological Interest, 5th Ed. Public Health Service, National Institutes of Health, Bethesda, Md., 1991.
• the Fc region of an immunoglobulin generally comprises two constant domains, CH2 and CH3. As is known in the art, an Fc region can be present in dimer or monomeric form.
• vector means a construct, which is capable of delivering, and, preferably, expressing, one or more gene(s) or sequence(s) of interest in a host cell.
• vectors include, but are not limited to, viral vectors, naked DNA or RNA expression vectors, plasmid, cosmid or phage vectors, DNA or RNA expression vectors associated with cationic condensing agents, DNA or RNA expression vectors encapsulated in liposomes, and certain eukaryotic cells, such as producer cells.
• expression control sequence means a nucleic acid sequence that directs transcription of a nucleic acid.
• An expression control sequence can be a promoter, such as a constitutive or an inducible promoter, or an enhancer. The expression control sequence is operably linked to the nucleic acid sequence to be transcribed.
• pharmaceutically acceptable carrier or “pharmaceutical acceptable excipient” includes any material which, when combined with an active ingredient, allows the ingredient to retain biological activity and is non-reactive with the subject's immune system.
• examples include, but are not limited to, any of the standard pharmaceutical carriers such as a phosphate buffered saline solution, water, emulsions such as oil/water emulsion, various types of wetting agents, detergents such as polysorbate 20 to prevent aggregation, and sugars such as sucrose as cryoprotectant.
• Preferred diluents for aerosol or parenteral administration are phosphate buffered saline (PBS) or normal (0.9%) saline.
• compositions comprising such carriers are formulated by well-known conventional methods (see, for example, Remington's Pharmaceutical Sciences, 18th edition, A. Gennaro, ed., Mack Publishing Co., Easton, Pa., 1990; and Remington, The Science and Practice of Pharmacy 20th Ed. Mack Publishing, 2000).
• k on refers to the rate constant for association of an antibody (or bioconjugate) to an antigen. Specifically, the rate constants (k on and k 0ff ) and equilibrium dissociation constants are measured using full-length antibodies and/or Fab antibody fragments (i.e. univalent) and CFD.
• k 0ff refers to the rate constant for dissociation of an antibody (or bioconjugate) from the antibody/antigen complex.
• KD refers to the equilibrium dissociation constant of an antibody- antigen (or bioconjugate-antigen) interaction.
• the terms“treating” or“treatment” means an approach for obtaining beneficial or desired results in a subject's condition, including clinical results.
• Beneficial or desired clinical results can include, but are not limited to, alleviation or amelioration of one or more symptoms or conditions, diminishment of the extent of a disease, stabilizing (i.e., not worsening) the state of disease, prevention of a disease's transmission or spread, delaying or slowing of disease progression, amelioration or palliation of the disease state, diminishment of the reoccurrence of disease, and remission, whether partial or total and whether detectable or undetectable.
• “Treating” and“treatment” as used herein also include prophylactic treatment.
• Treatment methods comprise administering to a subject a therapeutically effective amount of an active agent.
• the administering step may consist of a single administration or may comprise a series of administrations.
• the compositions are administered to the subject in an amount and for a duration sufficient to treat the patient.
• the length of the treatment period depends on a variety of factors, such as the severity of the condition, the age and genetic profile of the patient, the concentration of active agent, the activity of the compositions used in the treatment, or a combination thereof.
• the effective dosage of an agent used for the treatment or prophylaxis may increase or decrease over the course of a particular treatment or prophylaxis regime. Changes in dosage may result and become apparent by standard diagnostic assays known in the art. In some embodiments, chronic administration may be required.
• administering includes oral administration, topical contact, administration as a suppository, intravenous, intraperitoneal, intramuscular, intralesional, intrathecal, intranasal, or subcutaneous administration, or the implantation of a slow-release device, e.g., a mini-osmotic pump, to a subject.
• Administration is by any route, including parenteral and transmucosal (e.g., buccal, sublingual, palatal, gingival, nasal, vaginal, rectal, or transdermal).
• Parenteral administration includes, e.g., intravenous, intramuscular, intra- arteriole, intradermal, subcutaneous, intraperitoneal, intraventricular, and intracranial.
• compositions include, but are not limited to, the use of liposomal formulations, intravenous infusion, transdermal patches, etc.
• co-administer it is meant that a first compound described herein is administered at the same time, just prior to, or just after the administration of a second compound described herein.
• the term "therapeutic target” refers to a gene or gene product that, upon modulation of its activity (e.g., by modulation of expression, biological activity, and the like), can provide for modulation of the disease phenotype (e.g., fibrosis or cancer).
• modulation is meant to refer to an increase or a decrease in the indicated phenomenon (e.g., modulation of a biological activity refers to an increase in a biological activity or a decrease in a biological activity).
• cancer neoplasm
• tumor tumor
• tumor tumor
• tumor tumor-associated phenotype
• cancer tumor-associated phenotype
• cancer tumor-associated phenotype
• tumor tumor-associated phenotype
• tumor tumor-associated phenotype
• tumor tumor-associated phenotype
• tumor tumor-associated phenotype
• tumor tumor-associated phenotype
• tumor tumor-associated phenotype
• tumor tumor-associated phenotype
• cancerous cells e.g., tumor cells
• non-metastatic e.g., tumor cells, and non-metastatic cells. Detection of cancerous cells is of particular interest.
• normal as used in the context of "normal cell,” is meant to refer to a cell of an untransformed phenotype or exhibiting a morphology of a non-transformed cell of the tissue type being examined.
• Cancerous phenotype generally refers to any of a variety of biological phenomena that are characteristic of a cancerous cell, which phenomena can vary with the type of cancer.
• the cancerous phenotype is generally identified by abnormalities in, for example, cell growth or proliferation (e.g., uncontrolled growth or proliferation), regulation of the cell cycle, cell mobility, cell-cell interaction, or metastasis, etc.
• tumor microenvironment refers to a cellular environment in which the tumor exists, including tumor cells and surrounding blood vessels, immune cells, fibroblasts, bone marrow-derived inflammatory cells, lymphocytes, signaling molecules and the extracellular matrix.
• Immune cells refers to cells of hematopoietic origin that are involved in the specific recognition of antigens.
• Immune cells include antigen presenting cells (APCs), such as dendritic cells or macrophages, B cells, T cells, natural killer cells, and myeloid cells, such as monocytes, macrophages, eosinophils, mast cells, basophils, and granulocytes.
• APCs antigen presenting cells
• monocytes such as dendritic cells or macrophages
• B cells such as T cells
• myeloid cells such as monocytes, macrophages, eosinophils, mast cells, basophils, and granulocytes.
• the term“immune response” refers to T cell-mediated, NK cell-mediated, macrophage-mediated, and/or B cell-mediated immune responses.
• Exemplary immune responses include B cell responses (e.g., antibody production), NK cell responses or T cell responses (e.g., cytokine production, and cellular cytotoxicity) and activation of cytokine responsive cells, e.g., macrophages.
• the term“activating immune response” refers to enhancing the level of T-cell-mediated and/or B cell-mediated immune response, using methods known to one of skilled in the art.
• the level of enhancement is at least 20-50%, alternatively at least 60%, at least 70%, at least 80%, at least 90%, at least 100%, at least 120%, at least 150%, or at least 200%.
• TGF- b receptor refers to a family of serine/threonine kinase receptors expressed on cell surfaces that are specific for the protein transforming growth factor beta (TGF-b).
• TGF-b protein transforming growth factor beta
• the interaction between TGF-b and the receptor triggers a signaling pathway that is responsible for many functions, including but not limited to cell growth, differentiation (e.g. stem cells, immune cells), apoptosis, homeostasis, chemotaxis, inflammation, and immune cell activation.
• fibrosis refers to the medical condition wherein tissues or organs harden or scar as a result of unregulated production of extracellular matrix, such as collagen proteins. Fibrosis has been associated with chronic inflammation, where immune cells such as macrophages signal fibroblasts to express extracellular matrix proteins in response. This signaling is achieved through pathways such as the TGF-b pathway, although there are other pro-fibrotic pathways as well.
• Fibrosis includes but is not limited to liver fibrosis, bridging fibrosis, cirrhosis, kidney fibrosis, pulmonary fibrosis, idiopathic pulmonary fibrosis, cystic fibrosis, cardiovascular fibrosis, arterial fibrosis, venous thrombosis, cardiac fibrosis, pulmonary arterial fibrosis, arthro fibrosis, Crohn's disease, Dupuytren's contracture, keloids, mediastinal fibrosis, myelofibrosis, Peyronie's disease, nephrogenic systemic fibrosis, progressive massive fibrosis, retroperitoneal fibrosis, or systemic sclerosis.
• % w/w or“% wt/wt” means a percentage expressed in terms of the weight of the ingredient or agent over the total weight of the composition multiplied by 100.
• disclosed herein are methods of inducing immune activation, comprising contacting an anti-Gal3 antibody to a plurality of cells comprising a Gal3 -expressing cell and a TIM-3 expressing cell.
• methods of reducing fibrosis comprising contacting a tissue comprising a Gal3-expressing cell and at least one fibrosis biomarker with an anti-Gal3 antibody for a time sufficient to reduce expression of the at least one fibrosis biomarker in the tissue.
• the anti- Gal3 antibody results in reduced accumulation of one or more extracellular matrix proteins in the tissue, including, but not limited to, collagen.
• the Gal3-expressing cell upon binding to the anti-Gal3 antibody, expresses a cytokine which induces immune activation.
• the cytokine is an interferon.
• the interferon is IFNy.
• the IFNy production is 110%, 120%, 130%, 140%, 150%, 160%, 170%, 180%, 190%, 200%, 300%, 400%, 500%, 600%, or more of IFNy production by an isotype antibody.
• the IFNy production is 150% of IFNy production by an isotype antibody.
• the IFNy production is 160% of IFNy production by an isotype antibody.
• the IFNy production is 170% of IFNy production by an isotype antibody. In some cases, the IFNy production is 180% of IFNy production by an isotype antibody. In some cases, the IFNy production is 190% of IFNy production by an isotype antibody. In some cases, the IFNy production is 200% of IFNy production by an isotype antibody. In some cases, the IFNy production is more than 200% of
• the IFNy production by an isotype antibody In some cases, the IFNy production is more than 300% of IFNy production by an isotype antibody. In some cases, the IFNy production is more than 400% of IFNy production by an isotype antibody. In some cases, the IFNy production is more than 500% of IFNy production by an isotype antibody.
• the cytokine is an interleukin. In some cases, the interleukin is IL-2.
• the immune activation comprises a proliferation of CD3+ T lymphocytes, CD4+ T helper cells, CD8+ cytotoxic T cells, Natural Killer (NK) cells, or a combination thereof.
• the immune activation comprises a proliferation of CD3+ T lymphocytes.
• the immune activation comprises a proliferation of CD4+ T helper cells.
• the immune activation comprises a proliferation of CD8+ cytotoxic T cells.
• the immune activation comprises a proliferation of NK cells.
• the immune activation comprises a proliferation of T cells and NK cells.
• the immune activation comprises an increase in Ml macrophage population within the plurality of cells. In some cases, the immune activation comprises a decrease in M2 macrophage population within the plurality of cells. In some cases, the immune activation comprises an increase in Ml macrophage population within the plurality of cells and a decrease in M2 macrophage population within the plurality of cells.
• anti-Gal3 antibody binds to Gal3 and disrupts an interaction between Gal3 and TIM-3.
• disruption of an interaction between Gal3 and TIM- 3 includes partial inhibition of interaction between Gal3 and TIM-3.
• disruption of an interaction between Gal3 and TIM-3 includes complete inhibition of interaction between Gal3 and TIM-3.
• the Gal3-TIM-3 interaction is reduced to less than 99%, less than 95%, less than 90%, less than 85%, less than 80%, less than 75%, less than 70%, less than 65%, less than 60%, less than 59%, less than 55%, less than 50%, less than 45%, less than 40%, less than 34%, less than 30%, less than 25%, less than 20%, less than 14%, less than 10%, less than 7%, less than 5%, less than 4%, less than 3%, less than 2%, or less than 1%.
• the Gal3-TIM-3 interaction is reduced to less than 70%.
• the Gal3- TIM-3 interaction is reduced to less than 60%.
• the Gal3-TIM-3 interaction is reduced to less than 59%.
• the Gal3-TIM-3 interaction is reduced to less than 50%. In some cases, the Gal3-TIM-3 interaction is reduced to less than 40%. In some cases, the Gal3-TIM-3 interaction is reduced to less than 34%. In some cases, the Gal3-TIM-3 interaction is reduced to less than 30%. In some cases, the Gal3-TIM-3 interaction is reduced to less than 20%. In some cases, the Gal3-TIM-3 interaction is reduced to less than 14%. In some cases, the Gal3-TIM-3 interaction is reduced to less than 10%. In some cases, the Gal3- TIM-3 interaction is reduced to less than 7%. In some cases, the Gal3-TIM-3 interaction is reduced to less than 5%. In some cases, the Gal3-TIM-3 interaction is reduced to less than 4%. In some cases, the Gal3-TIM-3 interaction is reduced to less than 1%.
• the interaction between Gal3 and TIM-3 occurs at one or more residues of Gal3 selected from region 145-168, 160-177, or 165-184, wherein the residue positions correspond to positions 145-168, 160-177, or 165-184 of SEQ ID NO: 1.
• the interaction between Gal3 and TIM-3 occurs at one or more residues of Gal3 from region 145-168, wherein the residue positions correspond to positions 145-168 of SEQ ID NO: 1.
• the interaction between Gal3 and TIM-3 occurs at one or more residues of Gal3 from region 160-177, wherein the residue positions correspond to positions 160-177 of SEQ ID NO: 1.
• the interaction between Gal3 and TIM-3 occurs at one or more residues of Gal3 from region 165-184, wherein the residue positions correspond to positions 165-184 of SEQ ID NO: 1.
• the interaction between Gal3 and TIM-3 occurs at one or more residues of Gal3 selected from region 149-156, 152-168, 163-169, or 163-171, wherein the residue positions correspond to positions 149-156, 152-168, 163-169, or 163-171 of SEQ ID NO: 1.
• the interaction between Gal3 and TIM-3 occurs at one or more residues of Gal3 from region 149-156, wherein the residue positions correspond to positions 149-156 of SEQ ID NO: 1.
• the interaction between Gal3 and TIM- 3 occurs at one or more residues of Gal3 from region 152-168, wherein the residue positions correspond to positions 152-168 of SEQ ID NO: 1.
• the interaction between Gal3 and TIM-3 occurs at one or more residues of Gal3 from region 163-169, wherein the residue positions correspond to positions 163-169 of SEQ ID NO: 1.
• the interaction between Gal3 and TIM-3 occurs at one or more residues of Gal3 from region 163- 171, wherein the residue positions correspond to positions 163-171 of SEQ ID NO: 1.
• the interaction between Gal3 and TIM-3 occurs at one or more residues of TIM-3 selected from region 91-111 or 82-111, wherein the residue positions correspond to positions 91-111 or 82-111 of SEQ ID NO: 2.
• the interaction between Gal3 and TIM-3 occurs at one or more residues of TIM-3 from region 91-111, wherein the residue positions correspond to positions 91-111 of SEQ ID NO: 2.
• the interaction between Gal3 and TIM-3 occurs at one or more residues of TIM-3 from region 82- 111, wherein the residue positions correspond to positions 82-111 of SEQ ID NO: 2.
• the interaction between Gal3 and TIM-3 occurs at one or more residues of TIM-3 selected from region 91-111, 107-117, 96-102, 100-106, or 92-119, herein the residue positions correspond to positions 91-111, 107-117, 96-102, 100-106, or 92-119 of SEQ ID NO: 2.
• the interaction between Gal3 and TIM-3 occurs at one or more residues of TIM-3 from region 91-111, wherein the residue positions correspond to positions 91-111 of SEQ ID NO: 2.
• the interaction between Gal3 and TIM-3 occurs at one or more residues of TIM-3 from region 107-117, wherein the residue positions correspond to positions 107-117 of SEQ ID NO: 2.
• the interaction between Gal3 and TIM-3 occurs at one or more residues of TIM-3 from region 96-102, wherein the residue positions correspond to positions 96-102 of SEQ ID NO: 2.
• the interaction between Gal3 and TIM-3 occurs at one or more residues of TIM-3 from region 100-106, wherein the residue positions correspond to positions 100-106 of SEQ ID NO: 2.
• the interaction between Gal3 and TIM-3 occurs at one or more residues of TIM-3 from region 92-119, wherein the residue positions correspond to positions 92-119 of SEQ ID NO: 2.
• TIM-3 is human TIM-3
• NK Natural Killer
• methods of promoting T cell or Natural Killer (NK) cell proliferation comprising contacting a plurality of cells comprising T cells, NK cells, and Gal3 -expressing cells with an anti-Gal3 antibody for a time sufficient to promote proliferation of T cells or NK cells in the plurality of cells.
• methods of promoting T cell and Natural Killer (NK) cell proliferation comprising contacting a plurality of cells comprising T cells, NK cells, and Gal3 -expressing cells with an anti-Gal3 antibody for a time sufficient to promote proliferation of T cells and NK cells in the plurality of cells.
• the plurality of cells further comprises a TIM-3 expressing cell.
• anti-Gal3 antibody binds to Gal3 and disrupts an interaction between Gal3 and TIM-3. In some embodiments, anti-Gal3 antibody binds to Gal3 and disrupts an interaction between Gal3 and TIM-3. In some embodiments, the anti- Gal3 antibody binds to Gal3 and disrupts an interaction between Gal3 and TIM-3 greater than 25%, greater than 50%, greater than 100%, or greater than 200%.
• the plurality of cells further comprises tumor- infiltrating lymphocytes (TILs).
• TILs tumor- infiltrating lymphocytes
• the plurality of cells further comprises CD3+ T lymphocytes, CD4+ T helper cells, CD8+ cytotoxic T cells, or a combination thereof.
• the plurality of cells further comprises CD3+ T lymphocytes.
• the plurality of cells further comprises CD4+ T helper cells.
• the plurality of cells further comprises CD8+ cytotoxic T cells.
• the plurality of cells further comprises CD3+ T lymphocytes and CD4+ T helper cells.
• the plurality of cells further comprises CD3+ T lymphocytes and CD8+ cytotoxic T cells.
• the plurality of cells further comprises CD4+ T helper cells, CD8+ cytotoxic T cells. In some cases, the plurality of cells further comprises CD3+ T lymphocytes, CD4+ T helper cells, and CD8+ cytotoxic T cells.
• the contacting further induces TIL proliferation. In some cases, the contacting further induces proliferation of CD3+ T lymphocytes, CD4+ T helper cells, CD8+ cytotoxic T cells, or a combination thereof. In some cases, the contacting further induces proliferation of CD3+ T lymphocytes. In some cases, the contacting further induces proliferation of CD4+ T helper cells. In some cases, the contacting further induces proliferation of CD8+ cytotoxic T cells. In some cases, the contacting further induces proliferation of CD3+ T lymphocytes and CD4+ T helper cells. In some cases, the contacting further induces proliferation of CD3+ T lymphocytes and CD8+ cytotoxic T cells.
• the contacting further induces proliferation of CD4+ T helper cells and CD8+ cytotoxic T cells. In some cases, the contacting further induces proliferation of CD3+ T lymphocytes, CD4+ T helper cells, and CD8+ cytotoxic T cells.
• the contacting further comprises an increase in proliferation of Ml macrophages. In some embodiments, the contacting further comprises a decrease in M2 macrophage population within the TME. In some embodiments, the contacting further comprises an increase in proliferation of Ml macrophages and a decrease in M2 macrophage population within the TME.
• the anti-Gal3 antibody binds to at least one amino acid residue within a Gal3 region that corresponds to residues 1-20 of SEQ ID NO: 1. In some cases, the anti-Gal3 antibody binds to at least one amino acid residue within a Gal3 region that corresponds to residues 41-91 of SEQ ID NO: 1. In some cases, the anti-Gal3 antibody binds to at least one amino acid residue within a Gal3 region that corresponds to residues 41-71 of SEQ ID NO: 1. In some cases, the anti-Gal3 antibody binds to at least one amino acid residue within a Gal3 region that corresponds to residues 71-91 of SEQ ID NO: 1.
• the anti-Gal3 antibody binds to at least one amino acid residue within peptide_l, peptide_4, peptide_5, peptide_6, peptide_7, or peptide_8. In some cases, the anti-Gal3 antibody binds to at least one amino acid residue within peptide_l. In some cases, the anti-Gal3 antibody binds to at least one amino acid residue within peptide_4. In some cases, the anti-Gal3 antibody binds to at least one amino acid residue within peptide_5. In some cases, the anti-Gal3 antibody binds to at least one amino acid residue within peptide_6. In some cases, the anti-Gal3 antibody binds to at least one amino acid residue within peptide_7. In some cases, the anti-Gal3 antibody binds to at least one amino acid residue within peptide_8.
• the anti-Gal3 antibody comprises a binding affinity (KD) of less than InM, less than 1.2nM, less than 2nM, less than 5nM, less than lOnM, less than 13.5nM, less than 15nM, less than 20nM, less than 25nM, or less than 30nM.
• KD binding affinity
• the anti-Gal3 antibody comprises a KD of less than InM.
• the anti-Gal3 antibody comprises a KD of less than 1.2nM.
• the anti- Gal3 antibody comprises a KD of less than 2nM.
• the anti-Gal3 antibody comprises a KD of less than 5nM.
• the anti-Gal3 antibody comprises a KD of less than lOnM. In some embodiments, the anti-Gal3 antibody comprises a KD of less than 13.5nM. In some embodiments, the anti-Gal3 antibody comprises a KD of less than 15nM. In some embodiments, the anti-Gal3 antibody comprises a KD of less than 20nM. In some embodiments, the anti-Gal3 antibody comprises a KD of less than 25nM. In some embodiments, the anti-Gal3 antibody comprises a KD of less than 30nM.
• the anti-Gal3 antibody comprises a humanized antibody. In other embodiments, the anti-Gal3 antibody comprises a chimeric antibody. In some cases, the anti-Gal3 antibody comprises a full-length antibody or a binding fragment thereof. In some cases, the anti-Gal3 antibody comprises a bispecific antibody or a binding fragment thereof. In some cases, the anti-Gal3 antibody comprises a monovalent Fab', a divalent Fab2, a single-chain variable fragment (scFv), a diabody, a minibody, a nanobody, a single-domain antibody (sdAb), or a camelid antibody or binding fragment thereof.
• scFv single-chain variable fragment
• the anti-Gal3 antibody is a bispecific antibody or binding fragment thereof.
• Exemplary bispecific antibody formats include, but are not limited to, Knobs-into-Holes (KiH), Asymmetric Re-engineering Technology-immunoglobulin (ART-Ig), Triomab quadroma, bispecific monoclonal antibody (BiMAb, BsmAb, BsAb, bsMab, BS-Mab, or Bi-MAb), Azymetric, Bispecific Engagement by Antibodies based on the T-cell receptor (BEAT), Bispecific T-cell Engager (BiTE), Biclonics, Fab-scFv-Fc, Two-in- one/Dual Action Fab (DAF), FinomAb, scFv-Fc-(Fab)-fusion, Dock-aNd-Lock (DNL), Adaptir (previously SCORPION), Tandem diAbody (TandAb), Dual-affinity-ReT
• KH Knob
• the anti-Gal3 antibody is a bispecific antibody or binding fragment thereof comprising a bispecific antibody format illustrated in Fig. 2 of Brinkmann and Kontermann,“The making of bispecific antibodies,” MABS 9(2): 182- 212 (2017).
• an anti-Gal3 antibody comprises a framework region selected from IgM, IgG (e.g., IgGl, IgG2, IgG3, or IgG4), IgA, or IgE.
• the anti- Gal3 antibody comprises an IgM framework.
• the anti- Gal3 antibody comprises an IgG (e.g., IgGl, IgG2, IgG3, or IgG4) framework.
• the anti-Gal3 antibody comprises an IgGl framework.
• the anti-Gal3 antibody comprises an IgG2 framework.
• the anti-Gal3 antibody comprises an IgG4 framework.
• the anti-Gal3 antibody can further comprise a Fc mutation.
• any one or more of the Fc region or kappa regions in FIG. 37 can be paired with any of the CDR, VH/VL sequences herein, including FIGs. 35A-36B.
• the anti- Gal3 antibody comprises one or more mutations in the framework region, e.g., in the CHI domain, CH2 domain, CH3 domain, hinge region, or a combination thereof.
• the one or more mutations modulate Fc receptor interactions, e.g., to increase Fc effector functions such as ADCC and/or complement- dependent cytotoxicity (CDC).
• the one or more mutations stabilize the antibody and/or increase the half-life of the antibody.
• the one or more mutations modulate glycosylation.
• the Fc region comprises one or more mutations that modulate Fc receptor interactions, e.g., to enhance effector functions such as ADCC and/or CDC.
• exemplary residues when mutated modulate effector functions include S228, S239, K326, A330, 1332, or E333, in which the residue position correspond to IgGl and the residue numbering is in accordance to Kabat numbering (EU index of Kabat et al 1991 Sequences of Proteins of Immunological Interest).
• the one or more mutations comprise S228P, S239D, K326W, A330L, I332E, E333A, E333S, or a combination thereof.
• the one or more mutations comprise S228P, S239D, I332E, or a combination thereof. In some cases, the one or more mutations comprise S228P, S239D, A330L, I332E, or a combination thereof. In some cases, the one or more mutations comprise K326W, E333S, or a combination thereof. In some cases, the mutation comprises E333A. In some embodiments, the Fc region is an IgG4 Fc region. In some embodiments the S228P mutation is in the hinge region of IgG4. In some embodiments, the S228P mutation enhances the stability of IgG4 by preventing Fab arm exchange.
• an anti-Gal3 antibody comprises a humanization score quantified as the overall sequence similarity of the humanized antibody compared to an IMGT curated human germline antibody.
• an anti-Gal3 antibody comprises a humanization score of above 70, above 80, above 81, above 82, above 83, above 84, above 85, above 86, above 87, above 88, above 89, above 90, or above 95.
• the anti-Gal3 antibody comprises a humanization score of above 80.
• the anti-Gal3 antibody comprises a humanization score of above 83.
• the anti-Gal3 antibody comprises a humanization score of above 85.
• the anti-Gal3 antibody comprises a humanization score of above 87. In some embodiments, the anti-Gal3 antibody comprises a humanization score of above 90. In some case, the anti-Gal3 antibody comprises a humanization score of the heavy chain of above 70, above 80, above 81, above 82, above 83, above 84, above 85, above 86, above 87, above 88, above 89, above 90, or above 95, optionally above 80, above 85, or above 87.
• the anti-Ga!3 antibody comprises a humanization score of the light chain of above 70, above 80, above 81, above 82, above 83, above 84, above 85, above 86, above 87, above 88, above 89, above 90, or above 95, optionally above 80, above 83, or above 85.
• the anti-Gal3 antibody comprises complementarity determining regions (CDRs) as provided herein.
• the CDRs are part of the heavy chain (VH) of the antibody.
• the CDRs are part of the light chain (VL).
• the VH comprises a VH CDR1, a VH CDR2, and/or a VH CDR3.
• the VH CDR1 comprises one of the sequences of SEQ ID NOs: 37-64.
• the VH CDR2 comprises one of the sequences of SEQ ID NOs: 65-92.
• the VH CDR3 comprises one of the sequences of SEQ ID NOs: 93-120.
• the VL comprises a VL CDR1, a VL CDR2, and/or a VL CDR3.
• the VL CDR1 comprises one of the sequences of SEQ ID NOs: 121-148.
• the VL CDR2 comprises one of the sequences of SEQ ID NOs: 149-176.
• the VL CDR3 comprises one of the sequences of SEQ ID NOs: 177-204.
• the VH comprises one of the sequences of SEQ ID NOs: 205-232.
• the VL comprises one of the sequences of SEQ ID NOs: 233-260.
• the anti-Gal3 antibody comprises an hIgG4 constant region.
• the hIgG4 constant region comprises the hIgG4 constant region sequence within SEQ ID NOs: 261, 263, 265, or 267.
• the anti-Gal3 antibody comprises a hKappa constant region.
• the hKappa constant region comprises the hKappa constant region sequence within SEQ ID NOs: 262, 264, 266, or 268.
• the anti-Gal3 comprises a sequence depicted in Figs. 35A-B, 36A-B, or 37.
• the anti-Gal3 antibody is selected from the group consisting of 2D10.2B2, 3B 11.2G2, 4A11.2B5, 4G2.2G6, 6H6.2D6, 7D8.2D8, 12G5.D7, 13A12.2E5, 13G4.2F8, 13H12.2F8, 14H10.2C9, 15F10.2D6, 15G7.2A7, 19B5.2E6, 19D9.2E5, 20D11.2C6, 20H5.A3, 23H9.2E4, 24D12.2H9, 846.1F5, 846.2H3, 846T.1H2, 9H2.2H10, IMT001-4, IMT006-1, IMT006-5, IMT006-8, and mIMT001 (IMT001).
• the anti-Gal3 antibody is 2D10.2B2, 3B 11.2G2, 4A11.2B5, 4G2.2G6, 6H6.2D6, 7D8.2D8, 12G5.D7, 13A12.2E5, 13G4.2F8, 13H12.2F8, 14H10.2C9, 15F10.2D6, 15G7.2A7, 19B5.2E6, 19D9.2E5, 20D11.2C6, 20H5.A3, 23H9.2E4, 24D12.2H9, 846.1F5, 846.2H3, 846T.1H2, 9H2.2H10, IMT001-4, IMT006-1, IMT006-5, IMT006-8, or mIMT001, or any combination thereof.
• the anti-Gal3 antibody is mIMT001 (IMT001). In some embodiments, the anti-Gal3 antibody is not mIMT001 (IMT001). In some embodiments, the anti-Gal3 antibody is 4A11.2B5. In some embodiments, the anti-Gal3 antibody is mIMT001 and/or 4A11.2B5. In some embodiments, the anti-Gal3 antibody includes 1, 2, or 3 HCDRs from mIMT001 and/or 4A11.2B5. In some embodiments, the anti- Gal3 antibody includes 1, 2, or 3 LCDRs from mIMT001 and/or 4A11.2B5.
• the anti-Gal3 antibody includes 1, 2, or 3 HCDRs from mIMT001 and/or 4A11.2B5 and 1, 2, or 3 LCDRs from mIMT001 and/or 4A11.2B5. In some embodiments, the anti-Gal3 antibody includes 1, 2, or 3 HCDRs from mIMT001 and/or 4A11.2B5 and 1, 2, or 3 LCDRs from mIMT001 and/or 4A11.2B5, alternatively having 1, 2, 3, 4, 5, 6, 7, or 8 amino acid substitutions thereto.
• the anti-Gal3 antibody includes 1, 2, or 3 HCDRs from mIMT001 and/or 4A11.2B5 and 1, 2, or 3 LCDRs from mIMT001 and/or 4A11.2B5, and further comprises the mIMT001 and/or 4A11.2B5 VH and VL sequences (as shown within FIG. 36A and 36B) or a sequence that is at least 80, 85, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99 or 100% identical to the VH and VL sequences.
• the anti-Gal3 antibody is any one of IMT001-4, IMT006-1, IMT006-5, or IMT006-8. In some embodiments, the anti-Gal3 antibody is any one of IMT001-4, IMT006-1, IMT006-5, and/or IMT006-8. In some embodiments, the anti-Gal3 antibody includes 1, 2, or 3 HCDRs from any one of IMT001-4, IMT006-1, IMT006-5, and/or IMT006-8. In some embodiments, the anti-Gal3 antibody includes 1, 2, or 3 LCDRs from any one of IMT001-4, IMT006-1, IMT006-5, and/or IMT006-8.
• the anti- Gal3 antibody includes 1, 2, or 3 HCDRs from any one of IMT001-4, IMT006-1, IMT006-5, and/or IMT006-8 and 1, 2, or 3 LCDRs from any one of IMT001-4, IMT006-1, IMT006-5, and/or IMT006-8.
• the anti-Gal3 antibody includes 1, 2, or 3 HCDRs from any one of IMT001-4, IMT006-1, IMT006-5, and/or IMT006-8 and 1, 2, or 3 LCDRs from any one of IMT001-4, IMT006-1, IMT006-5, and/or IMT006-8, alternatively having 1, 2, 3, 4, 5, 6, 7, or 8 amino acid substitutions thereto.
• the anti-Gal3 antibody includes 1, 2, or 3 HCDRs from any one of IMT001-4, IMT006-1, IMT006-5, and/or IMT006-8 and 1, 2, or 3 LCDRs from any one of IMT001-4, IMT006-1, IMT006-5, and/or IMT006-8, and further comprises the any one of IMT001-4, IMT006-1, IMT006-5, and/or IMT006-8 VH and VL sequences (as shown within FIG. 36A and 36B) or a sequence that is at least 80, 85, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99 or 100% identical to the VH and VL sequences.
• the anti-GAL3 antibody competes for binding with one or more of: 2D10.2B2, 3B 11.2G2, 4A11.2B5, 4G2.2G6, 6H6.2D6, 7D8.2D8, 12G5.D7, 13A12.2E5, 13G4.2F8, 13H12.2F8, 14H10.2C9, 15F10.2D6, 15G7.2A7, 19B5.2E6, 19D9.2E5, 20D11.2C6, 20H5.A3, 23H9.2E4, 24D12.2H9, 846.1F5, 846.2H3, 846T.1H2, 9H2.2H10, IMT001-4, IMT006-1, IMT006-5, IMT006-8, and mIMT001 (IMT001).
• the anti-GAF3 antibody comprises at least the HCDR3 within any one of the antibodies of FIGs. 35A-36B. In some embodiments, the anti- GAF3 antibody further comprises all 3 HCDRs within any one of the antibodies of FIGs. 35A- 36B. In some embodiments, the anti-GAF3 antibody further comprises all 3 FCDRs within any one of the antibodies of FIGs. 35A-36B.
• the anti-GAF3 antibody comprises any one of the heavy chain sequences within FIG. 36A, or a sequence that is at least 80% identical thereto, such as 85, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, or 100% identical.
• the anti-GAF3 antibody comprises any one of the light chain sequences within FIG. 36B or a sequence that is at least 80% identical thereto, such as 85, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, or 100% identical.
• the anti- GAF3 antibody further comprises any one of the heavy chain sequences within FIG. 36A, or a sequence that is at least 80% identical thereto such as 85, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, or 100% identical.
• the anti-GAF3 antibody comprises 6 CDRs, wherein the 6 CDRs are, across their combined sequences, at least 80% identical to any set of 6 CDRs within FIGs. 35A and 35B, such as 85, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, or 100% identical.
• the anti-GAF3 antibody comprises at least one of the CDRs from FIG. 38 (with 1, 2, or 3 amino acid conservative substitutions).
• an anti-GAL3 antibody that comprises six of the CDRs from FIG. 38 (with 1, 2, or 3 amino acid conservative substitutions). In some embodiments, the anti-GAL3 antibody comprises six of the CDRs from FIG. 38, and wherein all six are from a single bin. In some embodiments, the anti-GAL3 antibody comprises six of the CDRs from FIG.38, or a set of 6 CDRs which, across their entire sequence, is at least 80% identical thereto.
• a method of inducing immune activation comprising, consisting essentially of, or consisting of contacting a plurality of cells comprising a Gal3 -expressing cell and a TIM-3-expressing cell with an antibody under conditions to disrupt an interaction between Gal3 and TIM-3, wherein the antibody specifically binds to Gal3, wherein the Gal3-expressing cell upon binding to the antibody expresses a cytokine which induces immune activation.
• the cytokine is an interferon or an interleukin.
• the cytokine is IFNy or IL-2.
• the immune activation comprises a proliferation of CD3+ T lymphocytes, CD4+ T helper cells, CD8+ cytotoxic T cells, Natural Killer cells, or a combination thereof.
• a method of promoting T cell or NK cell proliferation comprising, consisting essentially of, or consisting of contacting a plurality of cells comprising T cells, NK cells, and a Gal3- expressing cell with an antibody under conditions to effect proliferation of T cells and/or NK cells in the plurality of cells, wherein the antibody specifically binds to Gal3.
• a method of inducing immune activation comprising, consisting essentially of, or consisting of contacting a plurality of cells comprising a Gal3-expressing cell and a TIM-3- expressing cell with an antibody under conditions to disrupt an interaction between Gal3 and TIM-3, wherein the antibody specifically binds to Gal3, and wherein the Gal3-TIM-3 interaction is reduced to less than 70%, less than 60%, less than 59%, less than 50%, less than 40%, less than 34%, less than 30%, less than 20%, less than 14%, less than 10%, less than 7%, less than 5%, less than 4%, or less than 1%.
• a method of reducing fibrosis or propensity thereof in a tissue comprising, consisting essentially of, or consisting of contacting the tissue with an antibody that specifically binds anti-Gal3 antibody under conditions such that expression level of a fibrosis biomarker is reduced in the tissue.
• an anti-Gal3 antibody for use in the treatment of an immune related disease in a subject, wherein the anti-Gal3 antibody induces activation of the immune system.
• the anti-Gal3 antibody is selected from the group consisting of 2D10.2B2, 3B 11.2G2, 4A11.2B5, 4G2.2G6, 6H6.2D6, 7D8.2D8, 12G5.D7, 13A12.2E5, 13G4.2F8, 13H12.2F8, 14H10.2C9, 15F10.2D6, 15G7.2A7, 19B5.2E6, 19D9.2E5, 20D11.2C6, 20H5.A3, 23H9.2E4, 24D12.2H9, 846.1F5, 846.2H3, 846T.1H2, 9H2.2H10, IMT001-4, IMT006-1, IMT006-5, IMT006-8, and mIMT001 (IMT001).
• the anti-Gal3 antibody is 2D10.2B2, 3B 11.2G2, 4A11.2B5, 4G2.2G6, 6H6.2D6, 7D8.2D8, 12G5.D7, 13A12.2E5, 13G4.2F8, 13H12.2F8, 14H10.2C9, 15F10.2D6, 15G7.2A7, 19B5.2E6, 19D9.2E5, 20D11.2C6, 20H5.A3, 23H9.2E4, 24D12.2H9, 846.1F5, 846.2H3, 846T.1H2, 9H2.2H10, IMT001-4, IMT006-1, IMT006-5, IMT006-8, or mIMT001, or any combination thereof.
• the anti-Gal3 antibody is mIMT001 (IMT001). In some embodiments or any of the preceding embodiments, the anti-Gal3 antibody is not mIMT001 (IMT001). In some embodiments or any of the preceding embodiments, the anti-Gal3 antibody is 4A11.2B5, IMT001-4, IMT006-1, IMT006-5, and/or IMT006-8. In some embodiments or any of the preceding embodiments, the anti-Gal3 antibody is mIMT001, 4A11.2B5, IMT001-4, IMT006- 1, IMT006-5, and/or IMT006-8.
• the anti-Gal3 antibody is one or more of IMT001-4, IMT006-1, IMT006-5, or IMT006-8. In some embodiments or any of the preceding embodiments, the anti-Gal3 antibody is not mIMT001 (IMT001). In some embodiments or any of the preceding embodiments, the anti- Gal3 antibody is IMT001-4, IMT006-1, IMT006-5, and/or IMT006-8.
• IMT001- 4, IMT006-1, and IMT006-5 are humanized antibodies.
• mIMT001 is a murine antibody from which IMT001 was derived.
• 4A11.2B5 is the original murine antibody from which IMT006- 1 and IMT006-5 were derived.
• IMT001-4, IMT006-1, IMT006-5, and IMT006-8 are all humanized antibodies.
• a method of inducing immune activation comprising, consisting essentially of, or consisting of: contacting a plurality of cells comprising, consisting essentially of, or consisting of a Gal3-expressing cell and a TIM-3- expressing cell with an antibody under conditions to disrupt an interaction between Gal3 and TIM-3.
• the antibody is an anti-Gal3 antibody.
• a tissue comprising a Gal3-expressing cell and at least one fibrosis biomarker with an anti-Gal3 antibody for a time sufficient to reduce expression of the at least one fibrosis biomarker in the tissue.
• the anti-Gal3 antibody results in reduced accumulation of one or more extracellular matrix proteins in the tissue, including, but not limited to, collagen.
• the anti-Gal3 antibody is not IMT001. In some embodiments, the antibody is IMT001. In some embodiments, the anti-Gal3 antibody is 4A11.2B5. In some embodiments, the anti-Gal3 antibody is IMT001-4, IMT006-1, IMT006- 5, or IMT006-8.
• the anti-Gal3 antibody inhibits or disrupts an interaction of Gal3 and TIM-3.
• the Gal3-TIM-3 interaction is reduced to 99%, 95%, 90%, 80%, 78%, 70%, 66%, 60%, 56%, 52%, 50%, 40%, 30%, 29%, 27%, 20%, 19%, 17%, 10%, 5%, 4%, 3%, 2%, 1%, 0%, about 99%, about 95%, about 90%, about 80%, about 78%, about 70%, about 66%, about 60%, about 56%, about 52%, about 50%, about 40%, about 30%, about 29%, about 27%, about 20%, about 19%, about 17%, about 10%, about 5%, about 4%, about 3%, about 2%, about 1%, about 0%, less than 99%, less than 95%, less than 90%, less than 80%, less than 78%, less than 70%, less than 66%, less than 60%, less than 56%, less than 52%, less than 50%
• the anti-Gal3 antibody does not inhibit or disrupt an interaction between Gal3 and TIM-3.
• the interaction occurs at one or more residues of GAL3 selected from region 145-168, 160-177, or 165-184, wherein the residue positions correspond to positions 145-168, 160-177, or 165-184 of SEQ ID NO: 1.
• the interaction occurs at one or more residues of GAL3 selected from region 149-156, 152-168, 163-169, or 163-171, wherein the residue positions correspond to positions 149-156, 152-168, 163-169, or 163-171 of SEQ ID NO: 1.
• the interaction occurs at one or more residues of TIM-3 selected from region 90-122 or 82-111, wherein the residue positions correspond to positions 90-122 or 82-111 of SEQ ID NO: 2. In some embodiments, the interaction occurs at one or more residues of TIM-3 selected from region 91-111, 107-117, 96-102, 100-106, or 92-119, herein the residue positions correspond to positions 91-111, 107-117, 96-102, 100-106, or 92-119 of SEQ ID NO: 2.
• the Gal3 -expressing cell upon binding to the antibody expresses a cytokine which induces immune activation.
• cytokine refers to small proteins, polypeptides, or peptides that are involved in cell signaling.
• Cytokines include but are not limited to chemokines, interferons, interleukins, lymphokines, tumor necrosis factors, CCL1, CC12, CCL3, CCL4, CCL5, CCL6, CCL7, CCL8, CCL9, CCL11, CCL12, CCL13, CCL14, CCL15, CCL16, CCL17, CCL18, CCL19, CCL20, CCL21, CCL22, CCL23, CCL24, CCL25, CCL26, CCL27, CCL28, CXCL1, CXCL2, CXCL3, CXCL4, CXCL5, CXCL6, CXCL7, CXCL8, CXCL9, CXCL10, CXCL11, CXCL12, CXCL13, CXCL14, CXCL15, CXCL16, CXCL17, CX3CL1, XCL1, XCL2, INFa, INFb, INFy, IL-1, IL-2, IL-3, IL
• the cytokine is an interferon.
• the interferon is IFNy.
• the antibody results in IFNy production that is 100%, 150%, 160%, 170%, 180%, 190%, 200%, 300%, 400%, 500%, 600%, 700%, 800%, 900%, 1000% or more of IFNy production from an isotype antibody.
• the cytokine is an interleukin. In some embodiments, the interleukin is IL-2.
• the immune activation or activation of the immune system comprises, consists essentially of, or consists of a proliferation of CD3+ T lymphocytes, CD4+ T helper cells, CD8+ cytotoxic T cells, TFH cells, Th3 cells, Th17 cells, Natural Killer T (NKT) cells, or Natural Killer (NK) cells, or a combination thereof.
• immune activation or activation of the immune system comprises, consists essentially of, or consists of promoting T cell or NK cell proliferation.
• the immune activation or activation of the immune system comprises, consists essentially of, or consists of an increase in Ml macrophage, neutrophil, mast cell, eosinophil, basophil, or dendritic cell populations within the plurality of cells. In some embodiments, the immune activation or activation of the immune system comprises, consists essentially of, or consists of a decrease in M2 macrophage population within the plurality of cells.
• the TIM-3 is human TIM-3.
• the plurality of cells comprises, consists essentially of, or consists of a tumor cell.
• the plurality of cells is located within a tumor microenvironment (TME) and comprises, consists essentially of, or consists of tumor cells and immune cells.
• TME comprises tumor cells, immune cells, carcinoma associated fibroblasts, myeloid-derived suppressor cells, neutrophils, tumor infiltrating lymphocytes (TILs), or any combination thereof.
• the plurality of cells comprises, consists essentially of, or consists of CD3+ T lymphocytes, CD4+ T helper cells, CD8+ cytotoxic T cells, TFH cells, Th3 cells, Th17 cells, Natural Killer T (NKT) cells, Natural Killer (NK) cells, Ml macrophages, neutrophils, mast cells, eosinophils, basophils, or dendritic cells.
• the anti-TIM-3 antibody induces a decrease of tumor cells within the TME.
• the antibody binds to at least one amino acid residue within a Gal3 region that corresponds to residues 1-20 of SEQ ID NO: 1. In some embodiments, the antibody binds to at least one amino acid residue within a Gal3 region that corresponds to residues 41-91 of SEQ ID NO: 1. In some embodiments, the antibody binds to at least one amino acid residue within a Gal3 region that corresponds to residues 41-71 of SEQ ID NO: 1. In some embodiments, the antibody binds to at least one amino acid residue within a Gal3 region that corresponds to residues 71-91 of SEQ ID NO: 1.
• the antibody binds to at least one amino acid residue within peptide_l, peptide_2, peptide_3, peptide_4, peptide_5, peptide_6, peptide_7, peptide_8, peptide_9, peptide_10, peptide_l l, peptide_12, peptide_13, peptide_14, peptide_15, peptide_16, peptide_17, peptide_18, peptide_19, peptide_20, peptide_21, peptide_22, peptide_23, or peptide_24, or any combination thereof.
• the antibody comprises a KD of 1 fM, 10 fM, 100 fM, 1 pM, 10 pM, 100 pM, 1 nM, 1.2 nM, 2nM, 5nM, lOnM, 13.5nM, 15nM, 20nM, 25nM, 30nM, 100 nM, 200 nM, 300 nM, 400 nM, 500 nM, 1 mM, 10 mM, 100 mM, about 1 fM, about 10 fM, about 100 fM, about 1 pM, about 10 pM, about 100 pM, about 1 mM, about 1.2 nM, about 2nM, about 5nM, about lOnM, about 13.5nM, about 15nM, about 20nM, about 25nM, about 30nM, about 100 nM, about 200 nM, about 300 nM, about 400 nM, 500 nM, 1 mM, 10 mM, 100
• the antibody comprises a humanized antibody. In some embodiments, the antibody comprises a full-length antibody or a binding fragment thereof. In some embodiments, the antibody comprises a bispecific antibody or a binding fragment thereof. In some embodiments, the antibody comprises a monovalent Fab', a divalent Fab2, a single-chain variable fragment (scFv), a diabody, a minibody, a nanobody, a single- domain antibody (sdAb), or a camelid antibody or binding fragment thereof. In some embodiments, the antibody comprises an IgG framework. In some embodiments, the antibody comprises an IgGl, IgG2, or IgG4 framework. In some embodiments, the antibody further comprises a Fc mutation. In some embodiments, the antibody comprises a chimeric antibody.
• the anti-Gal3 antibody is selected from the group consisting of 2D10.2B2, 3B 11.2G2, 4A11.2B5, 4G2.2G6, 6H6.2D6, 7D8.2D8, 12G5.D7, 13A12.2E5, 13G4.2F8, 13H12.2F8, 14H10.2C9, 15F10.2D6, 15G7.2A7, 19B5.2E6, 19D9.2E5, 20D11.2C6, 20H5.A3, 23H9.2E4, 24D12.2H9, 846.1F5, 846.2H3, 846T.1H2, 9H2.2H10, IMT001-4, IMT006-1, IMT006-5, IMT006-8, and mIMT001 (IMT001).
• the anti-Gal3 antibody is mIMT001 (IMT001). In some embodiments, the anti- Gal3 antibody is not mIMT001 (IMT001). In some embodiments, the anti-Gal3 antibody is 4A11.2B5. In some embodiments, the anti-Gal3 antibody is mIMT001 and/or 4A11.2B5. In some embodiments, the antibody competes for binding to Gal3 with one or more of these antibodies (including any one of IMT001-4, IMT006-1, IMT006-5, and/or IMT006-8). In some embodiments, the antibody is one or more of: IMT001-4, IMT006-1, IMT006-5, or IMT006-8.
• the antibody for the method includes one or more of the CDRs from one or more of: IMT001-4, IMT006-1, IMT006-5, or IMT006-8. In some embodiments, the antibody for the method includes one or more of the VH, VL, or VH and VL from one or more of: IMT001-4, IMT006-1, IMT006-5, or IMT006-8.
• the method further comprises administering to a subject the anti-Gal3 antibody prior to the contacting step.
• the subject is diagnosed with a cancer.
• the cancer is a solid tumor.
• the cancer is breast cancer, colorectal cancer, kidney cancer, liver cancer, lung cancer, prostate cancer, melanoma, bladder cancer, uterine cancer, pancreatic cancer, thyroid cancer, brain cancer, bone cancer, sarcoma, or stomach cancer.
• the lung cancer is a non-small cell lung cancer (NSCLC), lung adenocarcinoma, squamous cell carcinoma, large cell carcinoma, or small cell lung cancer (SCLC).
• NSCLC non-small cell lung cancer
• SCLC small cell lung cancer
• the cancer is a hematologic malignancy, including but not limited to leukemias, Non-Hodgkin's lymphomas, Hodgkin's lymphomas, multiple myeloma, acute lymphoblastic leukemia, acute myelogenous leukemia, chronic lymphocytic leukemia, chronic myelogenous leukemia, acute monocytic leukemia, or any combination thereof.
• the cancer is a metastatic cancer. In some embodiments, the cancer is a relapsed or refractory cancer. Staging of a cancer or tumor is used to determine the progression of spread of the cancer or tumor within a patient.
• a commonly recognized standard for the classification of solid tumors is the TNM classification standard, which distinguishes a tumor based on the size of the tumor (T), extent of spread to lymph nodes (N), and metastasis (M). These classifications are further grouped into stages, wherein stage 0 growths are non-malignant neoplasms, stage I and II tumors are locally contained, stage III tumors have spread to nearby lymph nodes, and stage IV tumors have metastasized.
• TNM standard is a widely used method of classification
• alternative or modified standards which may represent the behavior of a particular cancer type may also be employed. Accordingly, while these standards are useful for determining progression, prognosis of early or late stages of a cancer or tumor are independent from a specific classification.
• the antibody specifically binds Gal3 or is an anti-Gal3 antibody.
• the contacting induces the expression level of at least one fibrosis biomarker to be reduced in the tissue.
• the tissue comprises at least one TIM-3 expressing cell.
• the anti-Gal3 antibody disrupts interaction of Gal3 and TIM-3.
• the anti-Gal3 antibody does not disrupt interaction of Gal3 and TIM-3.
• reducing fibrosis or propensity thereof in a tissue includes preventing fibrosis from occurring in a normal tissue. In some embodiments, reducing fibrosis or propensity thereof in a tissue includes slowing down or arresting progression of fibrosis in a fibrotic tissue. In some embodiments, reducing fibrosis or propensity thereof in a tissue includes reducing the amount of degree of fibrosis in a fibrotic tissue. In some embodiments, reducing fibrosis or propensity thereof in a tissue includes eliminating fibrosis in a fibrotic tissue.
• fibrosis biomarkers are also described herein.
• methods of monitoring the progression of a tissue fibrosis by monitoring one or more fibrosis biomarkers are also described herein.
• the at least one fibrosis biomarker comprises, consists essentially of, or consists of a-smooth muscle actin (a-SMA), fibronectin, collagen, collagen I, collagen III, collagen IV, elastin, laminin, hyaluronic acid, or proteoglycans, or any combination thereof.
• the at least one fibrosis biomarker comprises, consists essentially of, or consists of a-smooth muscle actin (a-SMA).
• the at least one fibrosis biomarker comprises, consists essentially of, or consists of fibronectin.
• the at least one fibrosis biomarker comprises, consists essentially of, or consists of a-smooth muscle actin (a-SMA) and fibronectin.
• the tissue is selected from a group consisting of a liver tissue, a kidney tissue, a skin tissue, a lung tissue, a heart tissue, a brain tissue, a colorectal tissue, an intestine tissue, a bone marrow tissue, a breast tissue, a prostate tissue, a bladder tissue, a uterine tissue, a pancreatic tissue, a thyroid tissue, a muscle tissue, a stomach tissue, and a soft tissue.
• the tissue is a kidney tissue or liver tissue.
• expression of the at least one fibrosis biomarker in the tissue treated with the anti-Gal3 antibody is less than expression of the at least one fibrosis biomarker in a control tissue treated with a mIgG2b antibody.
• the anti-Gal3 antibody results in reduced accumulation of extracellular matrix (ECM) proteins in the tissue.
• the extracellular matrix is comprised of, consists essentially of, or consists of agrin, nidogen, cadherins, clathrin, collagen, defensin, elastin, entactin, fibrillin, fibronectin, keratin, laminin, microtubule- actin cross-linking factor 1, SPARC-like protein, nesprin (nesprin-1, nesprin-2, nesprin-3), fibrous sheath-interacting protein, myomesin, nebulin, plakophilin, integrin, talins, exportins, transportin, tenascin, perlecan, sortilin-related receptor, tensin, or titin or any combination thereof.
• the extracellular matrix proteins comprises, consists essentially of, or consists of collagen.
• the tissue comprises, consists essentially of, or consists of a collagen-producing cell.
• the collagen-producing cell is a fibroblast cell.
• the fibroblast cell is activated by a fibrogenic cytokine.
• the fibrogenic cytokine is TGF-b, TGF-b1, IL-1b, TNF-a, or GM-CSF.
• the tissue has an elevated fibrogenic cytokine expression.
• the antibody binds to at least one amino acid residue within a Gal3 region that corresponds to residues 1-20 of SEQ ID NO: 1. In some embodiments, the antibody binds to at least one amino acid residue within a Gal3 region that corresponds to residues 41-91 of SEQ ID NO: 1. In some embodiments, the antibody binds to at least one amino acid residue within a Gal3 region that corresponds to residues 41-71 of SEQ ID NO: 1. In some embodiments, the antibody binds to at least one amino acid residue within a Gal3 region that corresponds to residues 71-91 of SEQ ID NO: 1.
• the subject is diagnosed with a fibrotic disease or fibrosis. In some embodiments, the subject is diagnosed with a fibrotic disease. In some embodiments, the fibrotic disease is renal fibrosis. In some embodiments, the fibrotic disease is liver fibrosis. In some embodiments, the antibody is formulated for systemic administration. In some embodiments, the antibody is formulated for parenteral administration. In some embodiments, the subject is a mammal.
• the fibrotic disease or fibrosis is liver fibrosis, bridging fibrosis, cirrhosis, renal (kidney) fibrosis, pulmonary fibrosis, idiopathic pulmonary fibrosis, cystic fibrosis, cardiovascular fibrosis, arterial fibrosis, venous thrombosis, arthrofibrosis, Crohn's disease, Dupuytren's contracture, keloids, mediastinal fibrosis, myelofibrosis, Peyronie's disease, nephrogenic systemic fibrosis, progressive massive fibrosis, retroperitoneal fibrosis, or systemic sclerosis
• the fibrotic disease is renal (kidney) fibrosis.
• the fibrotic disease is liver fibrosis.
• the method involves an antibody that binds to Gal3, but disrupts an interaction between Gal3 and TIM-3.
• This can be a direct obstruction of the interaction zone between Gal3 and TIM-3, or an indirect alteration, such as a binding that results in a conformational change of Gal3, so that it no longer binds or is active with TIM-3. It can also result by binding to a first section of Gal3, where some other part of the antibody obstructs or alters the interaction of Gal3 with TIM- 3.
• an anti-Gal3 antibody in the manufacture of a medicament or composition.
• the medicament or composition is used for the treatment of an immune related disease.
• the medicament or composition is used for the treatment of cancer.
• the medicament or composition is used for the treatment of a fibrotic disease or fibrosis.
• an anti-Gal3 antibody for use in the treatment of a disease in a subject.
• the anti-Gal3 antibody inhibits the interaction between Gal3 and TIM-3.
• the anti-Gal3 antibody does not inhibit the interaction between Gal3 and TIM-3.
• the anti-Gal3 antibody is for use in the treatment of a disease, wherein the disease is immune related, and wherein the anti-Gal3 antibody induces activation of the immune system of the subject.
• the immune related disease is an autoimmune disease.
• the immune related disease is an immunodeficiency.
• the immunodeficiency is immunosenescence, humoral immunodeficiency, B cell deficiency, T cell deficiency, neutropenia, asplenia, or complement deficiency.
• the activation of the immune system comprises proliferation of CD3+ T lymphocytes, CD4+ T helper cells, CD8+ cytotoxic T cells, TFH cells, T h 3 cells, T h l7 cells, Natural Killer T (NKT) cells, NK cells, or Ml macrophages, or a combination thereof. In some embodiments, the activation of the immune system comprises a reduction in M2 macrophages.
• the anti-Gal3 antibody is for use in the treatment of a disease, wherein the disease is cancer and the anti-TIM-3 antibody is for use in the treatment of cancer.
• the anti-Gal3 antibody is for use in the treatment of a disease, wherein the disease is a fibrotic disease or fibrosis.
• the anti- Gal3 antibody for use in the treatment of a disease results in reduced accumulation of extracellular matrix proteins in a tissue.
• the anti-Gal3 antibody for use in the treatment of a disease is administered in combination with an additional therapeutic agent, such as an immune checkpoint modulator, chemotherapeutic agent, targeted therapeutic agent, hormonal therapeutic agent, stem cell-based therapeutic agent, surgery, or radiation therapy.
• an additional therapeutic agent such as an immune checkpoint modulator, chemotherapeutic agent, targeted therapeutic agent, hormonal therapeutic agent, stem cell-based therapeutic agent, surgery, or radiation therapy.
• the antibody is formulated for systemic administration. In some embodiments, the antibody is formulated for parenteral, subcutaneous, intramuscular, intradermal, or intravenous administration, or any combination thereof.
• the anti-Gal3 antibody is administered to the subject in combination with an additional therapeutic agent.
• the additional therapeutic agent comprises an immunotherapeutic agent.
• the additional therapeutic agent comprises an immune checkpoint modulator.
• the additional therapeutic agent comprises a chemotherapeutic agent, targeted therapeutic agent, hormonal therapeutic agent, or a stem cell-based therapeutic agent.
• the additional therapeutic agent comprises an immunotherapeutic agent.
• the immunotherapy is an adoptive cell therapy.
• Exemplary adoptive cell therapies include AFP TCR, MAGE-A10 TCR, or NY-ESO- TCR from Adaptimmune; ACTR087/rituximab from Unum Therapeutics; anti-BCMA CAR- T cell therapy, anti-CD19“armored” CAR-T cell therapy, JCAR014, JCAR018, JCAR020, JCAR023, JCAR024, or JTCR016 from Juno Therapeutics; JCAR017 from Celgene/Juno Therapeutics; anti-CD 19 CAR-T cell therapy from Intrexon; anti-CD 19 CAR-T cell therapy, axicabtagene ciloleucel, KITE-718, KITE-439, or NY-ESO-1 T-cell receptor therapy from Kite Pharma; anti-CEA CAR-T therapy from Sorrento Therapeutics; anti-PSMA
• the immunotherapy is a dendritic cell-based therapy.
• the immunotherapy comprises a cytokine-based therapy, comprising e.g., an interleukin (IL) such as IL-2, IL-15, or IL-21, interferon (IFN)-a, or granulocyte macrophage colony- stimulating factor (GM-CSF).
• IL interleukin
• IFN interferon
• GM-CSF granulocyte macrophage colony- stimulating factor
• the immunotherapy comprises an immune checkpoint modulator.
• immune checkpoint modulators include PD-1 modulators such as nivolumab (Opdivo) from Bristol-Myers Squibb, pembrolizumab (Keytruda) from Merck, AGEN 2034 from Agenus, BGB-A317 from BeiGene, Bl-754091 from Boehringer- Ingelheim Pharmaceuticals, CBT-501 (genolimzumab) from CBT Pharmaceuticals, INCSHR1210 from Incyte, JNJ-63723283 from Janssen Research & Development, MEDI0680 from Medlmmune, MGA 012 from MacroGenics, PDR001 from Novartis Pharmaceuticals, PF-06801591 from Pfizer, REGN2810 (SAR439684) from Regeneron Pharmaceuticals/Sanofi, or TSR-042 from TESARO; CTLA-4 modulators such as ipilimumab (Yervoy), or AGEN
• the additional therapeutic agent comprises a chemotherapeutic agent.
• chemotherapeutic agents include, but are not limited to, alkylating agents such as cyclophosphamide, mechlorethamine, chlorambucil, melphalan, dacarbazine, or nitrosoureas; anthracyclines such as daunorubicin, doxorubicin, epirubicin, idarubicin, mitoxantrone, or valrubicin; cytoskeletal disruptors such as paclitaxel, docetaxel, abraxane, or taxotere; epothilones; histone deacetylase inhibitors such as vorinostat or romidepsin; topoisomerase I inhibitors such as irinotecan or topotecan; topoisomerase II inhibitors such as etoposide, teniposide, or tafluposide; kinase
• alkylating agents such
• the additional therapeutic agent comprises a hormone-based therapeutic agent.
• hormone-based therapeutic agents include, but are not limited to, aromatase inhibitors such as letrozole, anastrozole, exemestane, or aminoglutethimide; gonadotropin-releasing hormone (GnRH) analogues such as leuprorelin or goserelin; selective estrogen receptor modulators (SERMs) such as tamoxifen, raloxifene, toremifene, or fulvestrant; antiandrogens such as flutamide or bicalutamide; progestagens such as megestrol acetate or medroxyprogesterone acetate; androgens such as fluoxymesterone; estrogens such as estrogen diethylstilbestrol (DES), Estrace, or polyestradiol phosphate; or somatostatin analogs such as octreotide.
• aromatase inhibitors such as letrozole, anastrozole,
• the additional therapeutic agent is a first-line therapeutic agent.
• the anti-Gal3 antibody and the additional therapeutic agent are administered simultaneously.
• the anti- Gal3 antibody and the additional therapeutic agent are administered sequentially.
• the anti- Gal3 antibody is administered to the subject prior to administering the additional therapeutic agent.
• the anti- Gal3 antibody is administered to the subject after the additional therapeutic agent is administered.
• the additional therapeutic agent and the anti- Gal3 antibody are formulated as separate dosage.
• the subject has undergone surgery.
• the anti- Gal3 antibody and optionally the additional therapeutic agent are administered to the subject prior to surgery.
• the anti- Gal3 antibody and optionally the additional therapeutic agent are administered to the subject after surgery.
• the subject has undergone radiation.
• the anti- Gal3 antibody and optionally the additional therapeutic agent are administered to the subject during or after radiation treatment.
• the anti- Gal3 antibody and optionally the additional therapeutic agent are administered to the subject prior to undergoing radiation.
• the subject is a mammal. In some embodiments, the subject is a human.
• fibrosis or propensity thereof in a tissue by contacting the tissue with an antibody that specifically binds to Gal3.
• methods of disrupting a Gal3-TIM-3 interaction by an antibody that specifically binds to Gal3, under conditions to reduce expression of one or more fibrosis biomarkers in the tissue are also described herein.
• a method of reducing fibrosis or propensity thereof in a tissue comprising: contacting the tissue with an antibody that specifically binds Gal3 antibody under conditions such that expression level of a fibrosis biomarker is reduced in the tissue.
• the tissue further comprises a TIM- 3 expressing cell.
• the antibody further disrupts interaction of Gal3 and TIM-3.
• the antibody does not disrupt interaction of Gal3 and TIM-3.
• the at least one fibrosis biomarker comprises a-smooth muscle actin (a-SMA).
• the at least one fibrosis biomarker comprises fibronectin.
• the at least one fibrosis biomarker comprises a-smooth muscle actin (a- SMA) and fibronectin.
• the tissue is a kidney tissue or liver tissue.
• the tissue is selected from a group consisting of a liver tissue, a kidney tissue, a skin tissue, a lung tissue, a heart tissue, a brain tissue, an intestine tissue, a bone marrow tissue, and a soft tissue.
• expression of the at least one fibrosis biomarker in the tissue treated with the antibody is less than expression of the at least one fibrosis biomarker in a control tissue treated with a mIgG2b antibody.
• the antibody results in reduced accumulation of extracellular matrix proteins in the tissue.
• the extracellular matrix proteins comprises collagen.
• the tissue comprises a collagen-producing cell.
• the collagen-producing cell is a fibroblast cell.
• the fibroblast cell is activated by a fibrogenic cytokine.
• the fibrogenic cytokine is TGF-b1.
• the tissue has an elevated TGF-b1 expression.
• anti-Gal3 antibodies are raised by standard protocol by injecting a production animal with an antigenic composition. See, e.g., Harlow and Lane, Antibodies: A Laboratory Manual, Cold Spring Harbor Laboratory, 1988.
• antibodies may be raised by immunizing the production animal with the protein and a suitable adjuvant (e.g., Freund's, Freund's complete, oil-in-water emulsions, etc.).
• a suitable adjuvant e.g., Freund's, Freund's complete, oil-in-water emulsions, etc.
• conjugate proteins that are commercially available for such use include bovine serum albumin (BSA) and keyhole limpet hemocyanin (KLH).
• BSA bovine serum albumin
• KLH keyhole limpet hemocyanin
• peptides derived from the full sequence may be utilized.
• a superior immune response may be elicited if the polypeptide is joined to a carrier protein, such as ovalbumin, BSA or KLH.
• Polyclonal or monoclonal anti-Gal3 antibodies can be produced from animals which have been genetically altered to produce human immunoglobulins.
• a transgenic animal can be produced by initially producing a“knock-out” animal which does not produce the animal's natural antibodies, and stably transforming the animal with a human antibody locus (e.g., by the use of a human artificial chromosome). In such cases, only human antibodies are then made by the animal. Techniques for generating such animals, and deriving antibodies therefrom, are described in U.S. Pat. Nos. 6,162,963 and 6,150,584, incorporated fully herein by reference. Such antibodies can be referred to as human xenogenic antibodies.
• anti-Gal3 antibodies can be produced from phage libraries containing human variable regions. See U.S. Pat. No. 6,174,708, incorporated fully herein by reference.
• an anti-Gal3 antibody is produced by a hybridoma.
• hybridomas may be formed by isolating the stimulated immune cells, such as those from the spleen of the inoculated animal. These cells can then be fused to immortalized cells, such as myeloma cells or transformed cells, which are capable of replicating indefinitely in cell culture, thereby producing an immortal, immunoglobulin-secreting cell line.
• immortalized cells such as myeloma cells or transformed cells, which are capable of replicating indefinitely in cell culture, thereby producing an immortal, immunoglobulin-secreting cell line.
• the immortal cell line utilized can be selected to be deficient in enzymes necessary for the utilization of certain nutrients.
• Many such cell lines (such as myelomas) are known to those skilled in the art, and include, for example: thymidine kinase (TK) or hypoxanthine-guanine phosphoriboxyl transferase (HGPRT). These deficiencies allow selection for fused cells according to their ability to grow on, for example, hypoxanthine aminopter
• the anti-Gal3 antibody may be produced by genetic engineering.
• Anti-Gal3 antibodies disclosed herein can have a reduced propensity to induce an undesired immune response in humans, for example, anaphylactic shock, and can also exhibit a reduced propensity for priming an immune response which would prevent repeated dosage with an antibody therapeutic or imaging agent (e.g., the human- anti-murine- antibody“HAMA” response).
• an antibody therapeutic or imaging agent e.g., the human- anti-murine- antibody“HAMA” response.
• Such anti-Gal3 antibodies include, but are not limited to, humanized, chimeric, or xenogenic human anti-Gal3 antibodies.
• Chimeric anti-Gal3 antibodies can be made, for example, by recombinant means by combining the murine variable light and heavy chain regions (VK and VH), obtained from a murine (or other animal-derived) hybridoma clone, with the human constant light and heavy chain regions, in order to produce an antibody with predominantly human domains.
• VK and VH murine variable light and heavy chain regions
• the production of such chimeric antibodies is well known in the art, and may be achieved by standard means (as described, e.g., in U.S. Pat. No. 5,624,659, incorporated fully herein by reference).
• humanized antibodies are hybrid immunoglobulins, immunoglobulin chains or fragments thereof which contain minimal sequence derived from non-human immunoglobulin.
• humanized antibodies are human immunoglobulins (recipient antibody) in which residues from a complementary determining region (CDR) of the recipient are replaced by residues from a CDR of a non-human species (donor antibody) such as mouse, rat, rabbit or primate having the desired specificity, affinity and capacity.
• donor antibody such as mouse, rat, rabbit or primate having the desired specificity, affinity and capacity.
• Fv framework region (FR) residues of the human immunoglobulin are replaced by corresponding non-human residues.
• the humanized antibody may comprise residues which are found neither in the recipient antibody nor in the imported CDR or framework sequences. These modifications are made to further refine and optimize antibody performance and minimize immunogenicity when introduced into a human body.
• the humanized antibody will comprise substantially all of at least one, and typically two, variable domains, in which all or substantially all of the CDR regions correspond to those of a non-human immunoglobulin and all or substantially all of the FR regions are those of a human immunoglobulin sequence.
• the humanized antibody may also comprise at least a portion of an immunoglobulin constant region (Fc), typically that of a human immunoglobulin.
• Fc immunoglobulin constant region
• Humanized antibodies can be engineered to contain human-like immunoglobulin domains, and incorporate only the complementarity-determining regions of the animal-derived antibody. This can be accomplished by carefully examining the sequence of the hyper-variable loops of the variable regions of a monoclonal antigen binding unit or monoclonal antibody, and fitting them to the structure of a human antigen binding unit or human antibody chains. See, e.g., U.S. Pat. No. 6,187,287, incorporated fully herein by reference.
• “Humanized” antibodies are antibodies in which at least part of the sequence has been altered from its initial form to render it more like human immunoglobulins.
• the heavy (H) chain and light (L) chain constant (C) regions are replaced with human sequence.
• This can be a fusion polypeptide comprising a variable (V) region and a heterologous immunoglobulin C region.
• the complementarity determining regions (CDRs) comprise non-human antibody sequences, while the V framework regions have also been converted to human sequences. See, for example, EP 0329400.
• V regions are humanized by designing consensus sequences of human and mouse V regions, and converting residues outside the CDRs that are different between the consensus sequences.
• a framework sequence from a humanized antibody can serve as the template for CDR grafting; however, it has been demonstrated that straight CDR replacement into such a framework can lead to significant loss of binding affinity to the antigen.
• the more homologous a human antibody (HuAb) is to the original murine antibody (muAb) the less likely that the human framework will introduce distortions into the murine CDRs that could reduce affinity.
• the HuAb IC4 Based on a sequence homology search against an antibody sequence database, the HuAb IC4 provides good framework homology to muM4TS.22, although other highly homologous HuAbs would be suitable as well, especially kappa L chains from human subgroup I or H chains from human subgroup III. Rabat et al. (1987).
• Various computer programs such as ENCAD (Levitt et al. (1983) J. Mol. Biol. 168:595) are available to predict the ideal sequence for the V region.
• ENCAD Levitt et al. (1983) J. Mol. Biol. 168:595
• the invention thus encompasses HuAbs with different variable (V) regions. It is within the skill of one in the art to determine suitable V region sequences and to optimize these sequences. Methods for obtaining antibodies with reduced immunogenicity are also described in U.S. Pat. No. 5,270,202 and EP 699,755.
• Humanized antibodies can be prepared by a process of analysis of the parental sequences and various conceptual humanized products using three dimensional models of the parental and humanized sequences. Three dimensional immunoglobulin models are familiar to those skilled in the art. Computer programs are available which illustrate and display probable three-dimensional conformational structures of selected candidate immunoglobulin sequences. Inspection of these displays permits analysis of the likely role of the residues in the functioning of the candidate immunoglobulin sequence, i.e., the analysis of residues that influence the ability of the candidate immunoglobulin to bind its antigen. In this way, FR residues can be selected and combined from the consensus and import sequence so that the desired antibody characteristic, such as increased affinity for the target antigen(s), is achieved.
• a process for humanization of subject antigen binding units can be as follows.
• the best-fit germline acceptor heavy and light chain variable regions are selected based on homology, canonical structure and physical properties of the human antibody germlines for grafting.
• Computer modeling of mVH/VL versus grafted hVH/VL is performed and prototype humanized antibody sequence is generated. If modeling indicated a need for framework back-mutations, second variant with indicated FW changes is generated.
• DNA fragments encoding the selected germline frameworks and murine CDRs are synthesized. The synthesized DNA fragments are subcloned into IgG expression vectors and sequences are confirmed by DNA sequencing.
• the humanized antibodies are expressed in cells, such as 293F and the proteins are tested, for example in MDM phagocytosis assays and antigen binding assays.
• the humanized antigen binding units are compared with parental antigen binding units in antigen binding affinity, for example, by FACS on cells expressing the target antigen. If the affinity is greater than 2-fold lower than parental antigen binding unit, a second round of humanized variants can be generated and tested as described above.
• an anti-Gal3 antibody can be either“monovalent” or “multivalent.” Whereas the former has one binding site per antigen-binding unit, the latter contains multiple binding sites capable of binding to more than one antigen of the same or different kind. Depending on the number of binding sites, antigen binding units may be bivalent (having two antigen-binding sites), trivalent (having three antigen-binding sites), tetravalent (having four antigen-binding sites), and so on.
• Multivalent anti-Gal3 antibodies can be further classified on the basis of their binding specificities.
• A“monospecific” anti-Gal3 antibody is a molecule capable of binding to one or more antigens of the same kind.
• A“multispecific” anti-Gal3 antibody is a molecule having binding specificities for at least two different antigens. While such molecules normally will only bind two distinct antigens (i.e. bispecific anti-Gal3 antibodies), antibodies with additional specificities such as trispecific antibodies are encompassed by this expression when used herein.
• This disclosure further provides multispecific anti-Gal3 antibodies.
• Multispecific anti-Gal3 antibodies are multivalent molecules capable of binding to at least two distinct antigens, e.g., bispecific and trispecific molecules exhibiting binding specificities to two and three distinct antigens, respectively.
• Monoclonal antibodies can be obtained by injecting mice with a composition comprising an antigen, e.g. a Gal3 or an epitope of thereof, removing the spleen to obtain B-lymphocytes, fusing the B-lymphocytes with myeloma cells to produce hybridomas, cloning the hybridomas, selecting positive clones which produce antibodies to the antigen, culturing the clones that produce antibodies to the antigen, and isolating the antibodies from the hybridoma cultures.
• an antigen e.g. a Gal3 or an epitope of thereof
• Monoclonal antibodies produced can be isolated and purified from hybridoma cultures by a variety of well-established techniques. Such isolation techniques include affinity chromatography with Protein-A Sepharose, size-exclusion chromatography, and ion-exchange chromatography. See, for example, Coligan at pages 2.7.1-2.7.12 and pages 2.9.1-2.9.3. Also, see Baines et al.,“Purification of Immunoglobulin G (IgG),” in METHODS IN MOLECULAR BIOLOGY, VOL. 10, pages 79-104 (The Humana Press, Inc. 1992). After the initial raising of antibodies to the target protein, the antibodies can be sequenced and subsequently prepared by recombinant techniques.
• Human antibodies can be produced using transgenic mice that have been genetically engineered to produce specific human antibodies in response to antigenic challenge using the target protein. See Green et al., Nature Genet. 7: 13 (1994), Lonberg et al., Nature 368:856 (1994). Human antibodies against the target protein can also be constructed by genetic or chromosomal transfection methods, phage display technology, or by in vitro activated B cells. See e.g., McCafferty et al., 1990, Nature 348: 552-553; U.S. Pat. Nos. 5, 567,610 and 5, 229,275, each of which are hereby expressly incorporated by reference in its entirety.
• the Gal3-TIM-3 interaction can be reduced to less than 70%, less than 60%, less than 59%, less than 50%, less than 40%, less than 34%, less than 30%, less than 20%, less than 14%, less than 10%, less than 7%, less than 5%, less than 4%, or less than 1%.
• the present disclosure provides isolated nucleic acids encoding any of the anti-Gal3 antibodies disclosed herein.
• the present disclosure provides vectors comprising a nucleic acid sequence encoding any anti-Gal3 antibody disclosed herein.
• this invention provides isolated nucleic acids that encode a light-chain CDR and a heavy-chain CDR of an anti-Gal3 antibody disclosed herein.
• the subject anti-Gal3 antibodies can be prepared by recombinant DNA technology, synthetic chemistry techniques, or a combination thereof. For instance, sequences encoding the desired components of the anti-Gal3 antibodies, including light chain CDRs and heavy chain CDRs are typically assembled cloned into an expression vector using standard molecular techniques know in the art. These sequences may be assembled from other vectors encoding the desired protein sequence, from PCR-generated fragments using respective template nucleic acids, or by assembly of synthetic oligonucleotides encoding the desired sequences. Expression systems can be created by transfecting a suitable cell with an expressing vector which comprises an anti-Gal3 antibody of interest.
• Nucleotide sequences corresponding to various regions of light or heavy chains of an existing antibody can be readily obtained and sequenced using convention techniques including but not limited to hybridization, PCR, and DNA sequencing.
• Hybridoma cells that produce monoclonal antibodies serve as a preferred source of antibody nucleotide sequences.
• a vast number of hybridoma cells producing an array of monoclonal antibodies may be obtained from public or private repositories. The largest depository agent is American Type Culture Collection (atcc.org), which offers a diverse collection of well-characterized hybridoma cell lines.
• antibody nucleotides can be obtained from immunized or non-immunized rodents or humans, and form organs such as spleen and peripheral blood lymphocytes.
• Polynucleotides encoding anti-Gal3 antibodies can also be modified, for example, by substituting the coding sequence for human heavy and light chain constant regions in place of the homologous non-human sequences. In that manner, chimeric antibodies are prepared that retain the binding specificity of the original anti-Gal3 antibody.
• the present disclosure provides host cells expressing any one of the anti-Gal3 antibodies disclosed herein.
• a subject host cell typically comprises a nucleic acid encoding any one of the anti-Gal3 antibodies disclosed herein.
• the host cell is a Chinese hamster ovary (CHO) cell.
• the host cell is an NS0 cell.
• the invention provides host cells transfected with the polynucleotides, vectors, or a library of the vectors described above.
• the vectors can be introduced into a suitable prokaryotic or eukaryotic cell by any of a number of appropriate means, including electroporation, microprojectile bombardment; lipofection, infection (where the vector is coupled to an infectious agent), transfection employing calcium chloride, rubidium chloride, calcium phosphate, DEAE-dextran, or other substances.
• the choice of the means for introducing vectors will often depend on features of the host cell.
• any of the above-mentioned methods is suitable for vector delivery.
• Preferred animal cells are vertebrate cells, preferably mammalian cells, capable of expressing exogenously introduced gene products in large quantity, e.g. at the milligram level.
• Non-limiting examples of preferred cells are NIH3T3 cells, COS, HeLa, and CHO cells.
• expression of the anti-Gal3 antibodies can be determined using any nucleic acid or protein assay known in the art.
• the presence of transcribed mRNA of light chain CDRs or heavy chain CDRs, or the anti-Gal3 antibody can be detected and/or quantified by conventional hybridization assays (e.g. Northern blot analysis), amplification procedures (e.g. RT-PCR), SAGE (U.S. Pat. No. 5,695,937), and array-based technologies (see e.g. U.S. Pat. Nos. 5,405,783, 5,412,087 and 5,445,934), using probes complementary to any region of a polynucleotide that encodes the anti-Gal3 antibody.
• Expression of the vector can also be determined by examining the expressed anti-Gal3 antibody.
• a variety of techniques are available in the art for protein analysis. They include but are not limited to radioimmunoassays, ELISA (enzyme linked immunoradiometric assays),“sandwich” immunoassays, immunoradiometric assays, in situ immunoassays (using e.g., colloidal gold, enzyme or radioisotope labels), western blot analysis, immunoprecipitation assays, immunoflourescent assays, and SDS-PAGE.
• an anti-Gal3 antibody further comprises a payload.
• the payload comprises a small molecule, a protein or functional fragment thereof, a peptide, or a nucleic acid polymer.
• the number of payloads conjugated to the anti-Gal3 antibody is about 1: 1, one payload to one anti-Gal3 antibody.
• the ratio of the payloads to the anti-Gal3 antibody is about 2: 1, 3: 1, 4: 1, 5: 1, 6: 1, 7: 1, 8: 1, 9: 1, 10: 1, 11: 1, 12: 1, 13: 1, 14: 1, 15: 1, 16: 1, 17: 1, 18: 1, 19: 1, or 20: 1.
• the ratio of the payloads to the anti-Gal3 antibody is about 2: 1.
• the ratio of the payloads to the anti-Gal3 antibody is about 3: 1.
• the ratio of the payloads to the anti-Gal3 antibody is about 4: 1. In some cases, the ratio of the payloads to the anti-Gal3 antibody is about 6: 1. In some cases, the ratio of the payloads to the anti-Gal3 antibody is about 8: 1. In some cases, the ratio of the payloads to the anti-Gal3 antibody is about 12: 1.
• the payload is a small molecule.
• the small molecule is a cytotoxic payload.
• cytotoxic payloads include, but are not limited to, microtubule disrupting agents, DNA modifying agents, or Akt inhibitors.
• the payload comprises a microtubule disrupting agent.
• microtubule disrupting agents include, but are not limited to, 2- methoxyestradiol, auristatin, chalcones, colchicine, combretastatin, cryptophycin, dictyostatin, discodermolide, dolastain, eleutherobin, epothilone, halichondrin, laulimalide, maytansine, noscapinoid, paclitaxel, pelomside, phomopsin, podophyllotoxin, rhizoxin, spongistatin, taxane, tubulysin, vinca alkaloid, vinorelbine, or derivatives or analogs thereof.
• the maytansine is a maytansinoid.
• the maytansinoid is DM1, DM4, or ansamitocin.
• the maytansinoid is DM1.
• the maytansinoid is DM4.
• the maytansinoid is ansamitocin.
• the maytansinoid is a maytansionid derivative or analog such as described in U.S. Patent Nos. 5208020, 5416064, 7276497, and 6716821 or U.S. Publication Nos. 2013029900 and US20130323268.
• the payload is a dolastatin, or a derivative or analog thereof.
• the dolastatin is dolastatin 10 or dolastatin 15, or derivatives or analogs thereof.
• the dolastatin 10 analog is auristatin, soblidotin, symplostatin 1, or symplostatin 3.
• the dolastatin 15 analog is cemadotin or tasidotin.
• the dolastatin 10 analog is auristatin or an auristatin derivative.
• the auristatin or auristatin derivative is auristatin E (AE), auristatin F (AF), auristatin E5-benzoylvaleric acid ester (AEVB), monomethyl auristatin E (MMAE), monomethyl auristatin F (MMAF), or monomethyl auristatin D (MMAD), auristatin PE, or auristatin PYE.
• the auristatin derivative is monomethyl auristatin E (MMAE).
• the auristatin derivative is monomethyl auristatin F (MMAF).
• MMAF monomethyl auristatin F
• the auristatin is an auristatin derivative or analog such as described in U.S. Patent No. 6884869, 7659241, 7498298, 7964566, 7750116, 8288352, 8703714, and 8871720.
• the payload comprises a DNA modifying agent.
• the DNA modifying agent comprises DNA cleavers, DNA intercalators, DNA transcription inhibitors, or DNA cross-linkers.
• the DNA cleaver comprises bleomycine A2, calicheamicin, or derivatives or analogs thereof.
• the DNA intercalator comprises doxorubicin, epimbicin, PNU-159682, duocarmycin, pyrrolobenzodiazepine, oligomycin C, daunorubicin, valrubicin, topotecan, or derivatives or analogs thereof.
• the DNA transcription inhibitor comprises dactinomycin.
• the DNA cross-linker comprises mitomycin C.
• the DNA modifying agent comprises amsacrine, anthracycline, camptothecin, doxorubicin, duocarmycin, enediyne, etoposide, indolinobenzodiazepine, netropsin, teniposide, or derivatives or analogs thereof.
• the anthracycline is doxorubicin, daunorubicin, epimbicin, idarubicin, mitomycin-C, dactinomycin, mithramycin, nemorubicin, pixantrone, sabarubicin, or valrubicin.
• the analog of camptothecin is topotecan, irinotecan, silatecan, cositecan, exatecan, lurtotecan, gimatecan, belotecan, rubitecan, or SN-38.
• the duocarmycin is duocarmycin A, duocarmycin B l, duocarmycin B2, duocarmycin Cl, duocarmycin C2, duocarmycin D, duocarmycin SA, or CC-1065.
• the enediyne is a calicheamicin, esperamicin, or dynemicin A.
• the pyrrolobenzodiazepine is anthramycin, abbeymycin, chicamycin, DC-81, mazethramycin, neothramycins A, neothramycin B, porothramycin, prothracarcin, sibanomicin (DC- 102), sibiromycin, or tomaymycin.
• the pyrrolobenzodiazepine is a tomaymycin derivative, such as described in U.S. Patent Nos. 8404678 and 8163736.
• the pyrrolobenzodiazepine is such as described in U.S. Patent Nos.
• the pyrrolobenzodiazepine is a pyrrolobenzodiazepine dimer.
• the PBD dimer is a symmetric dimer. Examples of symmetric PBD dimers include, but are not limited to, SJG-136 (SG-2000), ZC- 423 (SG2285), SJG-720, SJG-738, ZC-207 (SG2202), and DSB-120.
• the PBD dimer is an unsymmetrical dimer. Examples of unsymmetrical PBD dimers include, but are not limited to, SJG-136 derivatives such as described in U.S. Patent Nos. 8697688 and 9242013 and U.S. Publication No. 20140286970.
• the payload comprises an Akt inhibitor.
• the Akt inhibitor comprises ipatasertib (GDC-0068) or derivatives thereof.
• the payload comprises a polymerase inhibitor, including, but not limited to polymerase II inhibitors such as a-amanitin, and poly(ADP-ribose) polymerase (PARP) inhibitors.
• PARP inhibitors include, but are not limited to Iniparib (BSI 201), Talazoparib (BMN-673), Olaparib (AZD-2281), Olaparib, Rucaparib (AG014699, PF-01367338), Veliparib (ABT-888), CEP 9722, MK 4827, BGB-290, or 3- aminobenzamide .
• the payload comprises a detectable moiety.
• detectable moieties include fluorescent dyes; enzymes; substrates; chemiluminescent moieties; specific binding moieties such as streptavidin, avidin, or biotin; or radioisotopes.
• the payload comprises an immunomodulatory agent.
• immunomodulatory agents include anti-hormones that block hormone action on tumors and immunosuppressive agents that suppress cytokine production, down-regulate self-antigen expression, or mask MHC antigens.
• anti-hormones include anti-estrogens including, for example, tamoxifen, raloxifene, aromatase inhibiting 4(5)-imidazoles, 4- hydroxytamoxifen, trioxifene, keoxifene, LY 117018, onapnstone, and toremifene; and anti- androgens such as flutamide, nilutamide, bicalutamide, leuprolide, and goserelin; and anti- adrenal agents.
• anti-estrogens including, for example, tamoxifen, raloxifene, aromatase inhibiting 4(5)-imidazoles, 4- hydroxytamoxifen, trioxifene, keoxifene, LY 117018, onapnstone, and toremifene
• anti- androgens such as flutamide, nilutamide, bicalutamide, leuprolide, and gosereli
• Illustrative immunosuppressive agents include, but are not limited to 2-amino- 6-aryl-5-substituted pyrimidines, azathioprine, cyclophosphamide, bromocryptine, danazol, dapsone, glutaraldehyde, anti-idiotypic antibodies for MHC antigens and MHC fragments, cyclosporin A, steroids such as glucocorticosteroids, streptokinase, or rapamycin.
• the payload comprises an immune modulator.
• immune modulators include, but are not limited to, gancyclovier, etanercept, tacrolimus, sirolimus, voclosporin, cyclosporine, rapamycin, cyclophosphamide, azathioprine, mycophenolgate mofetil, methotrextrate, glucocorticoid and its analogs, xanthines, stem cell growth factors, lymphotoxins, hematopoietic factors, tumor necrosis factor (TNF) (e.g ., TNFa), interleukins (e.g., interleukin- 1 ( IL-1), IL-2, IL-3, IL-6, IL-10, IL-12, IL-18, and IL- 21), colony stimulating factors (e.g., granulocyte-colony stimulating factor (G-CSF) and granulocyte macrophage-colony stimulating factor (GM-CSF).
• G-CSF gran
• the payload comprises an immunotoxin.
• Immunotoxins include, but are not limited to, ricin, radionuclides, pokeweed antiviral protein, Pseudomonas exotoxin A, diphtheria toxin, ricin A chain, fungal toxins such as restrictocin and phospholipase enzymes. See, generally,“Chimeric Toxins,” Olsnes and Pihl, Pharmac. Ther. 15:355-381 (1981); and“Monoclonal Antibodies for Cancer Detection and Therapy,” eds. Baldwin and Byers, pp. 159-179, 224-266, Academic Press (1985).
• the payload comprises a nucleic acid polymer.
• the nucleic acid polymer comprises short interfering nucleic acid (siNA), short interfering RNA (siRNA), double-stranded RNA (dsRNA), micro-RNA (miRNA), short hairpin RNA (shRNA), an antisense oligonucleotide.
• the nucleic acid polymer comprises an mRNA, encoding, e.g., a cytotoxic protein or peptide or an apoptotic triggering protein or peptide.
• Exemplary cytotoxic proteins or peptides include a bacterial cytotoxin such as an alpha-pore forming toxin (e.g., cytolysin A from E. coli), a beta-pore- forming toxin (e.g., a-Hemolysin, PVL— panton Valentine leukocidin, aerolysin, clostridial Epsilon-toxin, Clostridium perfringens enterotoxin), binary toxins (anthrax toxin, edema toxin, C. botulinum C2 toxin, C spirofome toxin, C. perfringens iota toxin, C.
• a bacterial cytotoxin such as an alpha-pore forming toxin (e.g., cytolysin A from E. coli), a beta-pore- forming toxin (e.g., a-Hemolysin, PVL— panton
• cyto- lethal toxins A and B
• prion parasporin, a cholesterol-dependent cytolysins (e.g., pneumolysin), a small pore-forming toxin (e.g., Gramicidin A), a cyanotoxin (e.g., microcystins, nodularins), a hemotoxin, a neurotoxin (e.g., botulinum neurotoxin), a cytotoxin, cholera toxin, diphtheria toxin, Pseudomonas exotoxin A, tetanus toxin, or an immunotoxin (idarubicin, ricin A, CRM9, Pokeweed antiviral protein, DT).
• a cholesterol-dependent cytolysins e.g., pneumolysin
• small pore-forming toxin e.g., Gramicidin A
• cyanotoxin e.
• Exemplary apoptotic triggering proteins or peptides include apoptotic protease activating factor- 1 (Apaf-1), cytochrome-c, caspase initiator proteins (CASP2, CASP8, CASP9, CASP10), apoptosis inducing factor (AIF), p53, p73, p63, Bcl-2, Bax, granzyme B, poly-ADP ribose polymerase (PARP), and P 21-activated kinase 2 (PAK2).
• the nucleic acid polymer comprises a nucleic acid decoy.
• the nucleic acid decoy is a mimic of protein-binding nucleic acids such as RNA-based protein-binding mimics.
• Exemplary nucleic acid decoys include transactivating region (TAR) decoy and Rev response element (RRE) decoy.
• the payload is an aptamer.
• Aptamers are small oligonucleotide or peptide molecules that bind to specific target molecules.
• Exemplary nucleic acid aptamers include DNA aptamers, RNA aptamers, or XNA aptamers which are RNA and/or DNA aptamers comprising one or more unnatural nucleotides.
• Exemplary nucleic acid aptamers include ARC19499 (Archemix Corp.), REG1 (Regado Biosciences), and ARC1905 (Ophthotech).
• Nucleic acids in accordance with some embodiments described herein optionally include naturally occurring nucleic acids, or one or more nucleotide analogs or have a structure that otherwise differs from that of a naturally occurring nucleic acid.
• 2' -modifications include halo, alkoxy, and allyloxy groups.
• the 2' -OH group is replaced by a group selected from H, OR, R, halo, SH, SR, N3 ⁇ 4, NHR, NR2 or CN, wherein R is C1-C6 alkyl, alkenyl, or alkynyl, and halo is F, Cl, Br, or I.
• modified linkages include phosphorothioate and 5'-N-phosphoramidite linkages.
• nucleic acids having a variety of different nucleotide analogs, modified backbones, or non-naturally occurring intemucleoside linkages are utilized in accordance with some embodiments described herein.
• nucleic acids include natural nucleosides (i.e., adenosine, thymidine, guanosine, cytidine, uridine, deoxyadenosine, deoxythymidine, deoxyguanosine, and deoxycytidine) or modified nucleosides.
• modified nucleotides include base modified nucleoside (e.g., aracytidine, inosine, isoguanosine, nebularine, pseudouridine, 2,6-diaminopurine, 2-aminopurine, 2-thiothymidine, 3-deaza-5- azacytidine, 2'-deoxyuridine, 3-nitorpyrrole, 4-methylindole, 4-thiouridine, 4-thiothymidine, 2-aminoadenosine, 2-thiothymidine, 2-thiouridine, 5-bromocytidine, 5-iodouridine, inosine, 6-azauridine, 6-chloropurine, 7-deazaadenosine, 7-deazaguanosine, 8-azaadenosine, 8-azidoadenosine, benzimidazole, Ml-methyladenosine, pyrrolo-pyrimidine, 2-amino- 6-chloropur
• nucleic acids Natural and modified nucleotide monomers for the chemical synthesis of nucleic acids are readily available.
• nucleic acids comprising such modifications display improved properties relative to nucleic acids consisting only of naturally occurring nucleotides.
• nucleic acid modifications described herein are utilized to reduce and/or prevent digestion by nucleases (e.g. exonucleases, endonucleases, etc.).
• nucleases e.g. exonucleases, endonucleases, etc.
• the structure of a nucleic acid may be stabilized by including nucleotide analogs at the 3' end of one or both strands order to reduce digestion.
• nucleotide modifications and/or backbone structures may exist at various positions in the nucleic acid.
• modification include morpholinos, peptide nucleic acids (PNAs), methylphosphonate nucleotides, thiolphosphonate nucleotides, 2'-fluoro N3-P5'-phosphoramidites, 1', 5'-anhydrohexitol nucleic acids (HNAs), or a combination thereof.
• PNAs peptide nucleic acids
• HNAs 2'-fluoro N3-P5'-phosphoramidites
• HNAs 1', 5'-anhydrohexitol nucleic acids
• the payload is conjugated to an anti-Gal3 antibody described herein by a native ligation.
• the conjugation is as described in: Dawson, et al.“Synthesis of proteins by native chemical ligation,” Science 1994, 266, 776-779; Dawson, et al.“Modulation of Reactivity in Native Chemical Ligation through the Use of Thiol Additives,” J. Am. Chem. Soc. 1997, 119, 4325-4329; Hackeng, et al.“Protein synthesis by native chemical ligation: Expanded scope by using straightforward methodology.,” Proc. Natl. Acad. Sci.
• the payload is conjugated to an anti-Gal3 antibody described herein by a site-directed method utilizing a “traceless” coupling technology (Philochem).
• the “traceless” coupling technology utilizes an N-terminal 1,2-aminothiol group on the binding moiety which is then conjugate with a polynucleic acid molecule containing an aldehyde group (see Casi et al, “Site- specific traceless coupling of potent cytotoxic drugs to recombinant antibodies for pharmacodelivery,” JACS 134(13): 5887-5892 (2012))
• the payload is conjugated to an anti-Gal3 antibody described herein by a site-directed method utilizing an unnatural amino acid incorporated into the binding moiety.
• the unnatural amino acid comprises p-acctylphcnyl alanine (pAcPhe).
• pAcPhe p-acctylphcnyl alanine
• the keto group of pAcPhe is selectively coupled to an alkoxy-amine derivatived conjugating moiety to form an oxime bond.
• the payload is conjugated to an anti-Gal3 antibody described herein by a site-directed method utilizing an enzyme-catalyzed process.
• the site-directed method utilizes SMARTagTM technology (Redwood).
• the SMARTagTM technology comprises generation of a formylglycine (FGly) residue from cysteine by formylglycine-generating enzyme (FGE) through an oxidation process under the presence of an aldehyde tag and the subsequent conjugation of FGly to an alkylhydraine-functionalized polynucleic acid molecule via hydrazino-Pictet-Spengler (HIPS) ligation
• FGE formylglycine-generating enzyme
• HIPS hydrazino-Pictet-Spengler
• the enzyme-catalyzed process comprises microbial transglutaminase (mTG).
• the payload is conjugated to the anti-Gal3 antibody utilizing a microbial transglutaminze catalyzed process.
• mTG catalyzes the formation of a covalent bond between the amide side chain of a glutamine within the recognition sequence and a primary amine of a functionalized polynucleic acid molecule.
• mTG is produced from Streptomyces mobarensis. (see Strop et al, “Location matters: site of conjugation modulates stability and pharmacokinetics of antibody drug conjugates,” Chemistry and Biology 20(2) 161-167 (2013)).
• the payload is conjugated to an anti-Gal3 antibody by a method as described in PCT Publication No. W02014/140317, which utilizes a sequence- specific transpeptidase.
• the payload is conjugated to an anti-Gal3 antibody described herein by a method as described in U.S. Patent Publication Nos. 2015/0105539 and 2015/0105540.
• a linker described above comprises a natural or synthetic polymer, consisting of long chains of branched or unbranched monomers, and/or cross-linked network of monomers in two or three dimensions.
• the linker includes a polysaccharide, lignin, rubber, or polyalkylen oxide (e.g., polyethylene glycol).
• the linker includes, but is not limited to, alpha-, omega-dihydroxylpolyethyleneglycol, biodegradable lactone-based polymer, e.g. polyacrylic acid, polylactide acid (PLA), poly(glycolic acid) (PGA), polypropylene, polystyrene, polyolefin, polyamide, polycyanoacrylate, polyimide, polyethylenterephthalat (PET, PETG), polyethylene terephthalate (PETE), polytetramethylene glycol (PTG), or polyurethane as well as mixtures thereof.
• PLA polylactide acid
• PGA poly(glycolic acid)
• PEG poly(glycolic acid)
• polypropylene polystyrene
• polyolefin polyamide
• polycyanoacrylate polyimide
• PET polyethylenterephthalat
• PETG PETG
• PETG polyethylene terephthalate
• PEG polytetramethylene glyco
• a mixture refers to the use of different polymers within the same compound as well as in reference to block copolymers.
• block copolymers are polymers wherein at least one section of a polymer is build up from monomers of another polymer.
• the linker comprises polyalkylene oxide.
• the linker comprises PEG.
• the linker comprises polyethylene imide (PEI) or hydroxy ethyl starch (HES).
• the polyalkylene oxide (e.g., PEG) is a polydispers or monodispers compound.
• polydispers material comprises disperse distribution of different molecular weight of the material, characterized by mean weight (weight average) size and dispersity.
• the monodisperse PEG comprises one size of molecules.
• the linker is poly- or monodispersed polyalkylene oxide (e.g., PEG) and the indicated molecular weight represents an average of the molecular weight of the polyalkylene oxide, e.g., PEG, molecules.
• the linker comprises a polyalkylene oxide (e.g., PEG) and the molecular weight of the polyalkylene oxide (e.g., PEG) is about 200, 300, 400, 500, 600, 700, 800, 900, 1000, 1100, 1200, 1300, 1400, 1450, 1500, 1600, 1700, 1800, 1900, 2000, 2100, 2200, 2300, 2400, 2500, 2600, 2700, 2800, 2900, 3000, 3250, 3350, 3500, 3750, 4000, 4250, 4500, 4600, 4750, 5000, 5500, 6000, 6500, 7000, 7500, 8000, 10,000, 12,000, 20,000, 35,000, 40,000, 50,000, 60,000, or 100,000 Da.
• PEG polyalkylene oxide
• the polyalkylene oxide is a discrete PEG, in which the discrete PEG is a polymeric PEG comprising more than one repeating ethylene oxide units.
• a discrete PEG comprises from 2 to 60, from 2 to 50, or from 2 to 48 repeating ethylene oxide units.
• a dPEG comprises about 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 24, 26, 28, 30, 35, 40, 42, 48, 50 or more repeating ethylene oxide units.
• a dPEG comprises about 2 or more repeating ethylene oxide units.
• a dPEG is synthesized as a single molecular weight compound from pure (e.g., about 95%, 98%, 99%, or 99.5%) staring material in a step-wise fashion.
• a dPEG has a specific molecular weight, rather than an average molecular weight.
• a dPEG described herein is a dPEG from Quanta Biodesign, LMD.
• the linker is a discrete PEG, optionally comprising from 2 to 60, from 2 to 50, or from 2 to 48 repeating ethylene oxide units.
• the linker comprises a dPEG comprising about 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 24, 26, 28, 30, 35, 40, 42, 48, 50 or more repeating ethylene oxide units.
• the linker is a dPEG from Quanta Biodesign, LMD.
• the linker is a polypeptide linker.
• the polypeptide linker comprises at least 2, 3, 4, 5, 6, 7, 8, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, or more amino acid residues.
• the polypeptide linker comprises at least 2, 3, 4, 5, 6, 7, 8, or more amino acid residues.
• the polypeptide linker comprises at most 2, 3, 4, 5, 6, 7, 8, or less amino acid residues.
• the polypeptide linker is a cleavable polypeptide linker (e.g., either enzymatically or chemically). In some cases, the polypeptide linker is a non-cleavable polypeptide linker.
• the polypeptide linker comprises Val-Cit (valine- citmlline), Gly-Gly-Phe-Gly, Phe-Lys, Val-Lys, Gly-Phe-Lys, Phe-Phe-Lys, Ala-Lys, Val- Arg, Phe-Cit, Phe-Arg, Leu-Cit, Ile-Cit, Trp-Cit, Phe-Ala, Ala-Leu-Ala-Leu, or Gly-Phe-Leu- Gly.
• the polypeptide linker comprises a peptide such as: Val-Cit (valine-citmlline), Gly-Gly-Phe-Gly, Phe-Lys, Val-Lys, Gly-Phe-Lys, Phe-Phe-Lys, Ala-Lys, Val-Arg, Phe-Cit, Phe-Arg, Leu-Cit, Ile-Cit, Trp-Cit, Phe-Ala, Ala- Leu- Ala- Leu, or Gly-Phe- Leu-Gly.
• the polypeptide linker comprises L-amino acids, D-amino acids, or a mixture of both L- and D-amino acids.
• the linker comprises a homobifuctional linker.
• exemplary homobifuctional linkers include, but are not limited to, Lomant's reagent dithiobis (succinimidylpropionate) DSP, 3'3'-dithiobis(sulfosuccinimidyl proprionate (DTSSP), disuccinimidyl suberate (DSS), bis(sulfosuccinimidyl)suberate (BS), disuccinimidyl tartrate (DST), disulfosuccinimidyl tartrate (sulfo DST), ethylene glycobis(succinimidylsuccinate) (EGS), disuccinimidyl glutarate (DSG), N,N '-disuccinimidyl carbonate (DSC), dimethyl adipimidate (DMA), dimethyl pimelimidate (DMP), dimethyl suberimidate (DMS), dimethyl-
• the linker comprises a heterobifunctional linker.
• exemplary heterobifunctional linker include, but are not limited to, amine-reactive and sulfhydryl cross-linkers such as N-succinimidyl 3-(2-pyridyldithio)propionate (sPDP), long- chain N-succinimidyl 3-(2-pyridyldithio)propionate (LC-sPDP), water-soluble-long-chain N- succinimidyl 3-(2-pyridyldithio) propionate (sulfo-LC-sPDP), succinimidyloxycarbonyl-a- methyl-a-(2-pyridyldithio)toluene (sMPT), sulfosuccinimidyl-6-[a-methyl-a-(2- pyridyldithio)toluamido]hexanoate (sulfo-
• the linker comprises a benzoic acid group, or its derivatives thereof.
• the benzoic acid group or its derivatives thereof comprise paraaminobenzoic acid (PABA).
• the benzoic acid group or its derivatives thereof comprise gamma-aminobutyric acid (GABA).
• the linker comprises one or more of a maleimide group, a peptide moiety, and/or a benzoic acid group, in any combination. In some embodiments, the linker comprises a combination of a maleimide group, a peptide moiety, and/or a benzoic acid group. In some embodiments, the maleimide group is maleimidocaproyl (me). In some embodiments, the peptide group is val-cit. In some embodiments, the benzoic acid group is PABA. In some embodiments, the linker comprises a mc-val-cit group. In some cases, the linker comprises a val-cit-PABA group. In additional cases, the linker comprises a mc-val-cit-PABA group.
• the linker is a self-immolative linker or a self- elimination linker. In some cases, the linker is a self-immolative linker. In other cases, the linker is a self-elimination linker (e.g., a cyclization self-elimination linker). In some embodiments, the linker comprises a linker described in U.S. Patent No. 9,089,614 or PCT Publication No. WO2015038426. [0250] In some embodiments, the linker is a dendritic type linker. In some embodiments, the dendritic type linker comprises a branching, multifunctional linker moiety. In some embodiments, the dendritic type linker comprises PAMAM dendrimers.
• the linker is a traceless linker or a linker in which after cleavage does not leave behind a linker moiety (e.g., an atom or a linker group) to the antibody or payload.
• a linker moiety e.g., an atom or a linker group
• exemplary traceless linkers include, but are not limited to, germanium linkers, silicium linkers, sulfur linkers, selenium linkers, nitrogen linkers, phosphorus linkers, boron linkers, chromium linkers, or phenylhydrazide linker.
• the linker is a traceless aryl-triazene linker as described in Hejesen, el al.,“A traceless aryl-triazene linker for DNA-directed chemistry,” Org Biomol Chem 11(15): 2493-2497 (2013).
• the linker is a traceless linker described in Blaney, et al.,“Traceless solid-phase organic synthesis,” Chem. Rev. 102: 2607-2024 (2002).
• a linker is a traceless linker as described in U.S. Patent No. 6,821,783.
• a pharmaceutical formulation for reducing tissue fibrosis can comprise an anti-Gal3 antibody described supra.
• the anti-Gal3 antibody can be formulated for systemic administration.
• the anti-Gal3 antibody can be formulated for parenteral administration.
• an anti-Gal3 antibody is further formulated as a pharmaceutical composition.
• the pharmaceutical composition is formulated for administration to a subject by multiple administration routes, including but not limited to, parenteral (e.g., intravenous, subcutaneous, intramuscular, intraarterial, intradermal, intraperitoneal, intravitreal, intracerebral, or intracerebroventricular), oral, intranasal, buccal, rectal, or transdermal administration routes.
• the pharmaceutical composition describe herein is formulated for parenteral (e.g., intravenous, subcutaneous, intramuscular, intraarterial, intradermal, intraperitoneal, intravitreal, intracerebral, or intracerebroventricular) administration.
• parenteral e.g., intravenous, subcutaneous, intramuscular, intraarterial, intradermal, intraperitoneal, intravitreal, intracerebral, or intracerebroventricular
• the pharmaceutical composition describe herein is formulated for oral administration.
• the pharmaceutical composition describe herein is formulated for intranasal administration.
• the pharmaceutical formulations include, but are not limited to, aqueous liquid dispersions, self-emulsifying dispersions, solid solutions, liposomal dispersions, aerosols, solid dosage forms, powders, immediate release formulations, controlled release formulations, fast melt formulations, tablets, capsules, pills, delayed release formulations, extended release formulations, pulsatile release formulations, multiparticulate formulations (e.g., nanoparticle formulations), and mixed immediate and controlled release formulations.
• aqueous liquid dispersions self-emulsifying dispersions, solid solutions, liposomal dispersions, aerosols, solid dosage forms, powders, immediate release formulations, controlled release formulations, fast melt formulations, tablets, capsules, pills, delayed release formulations, extended release formulations, pulsatile release formulations, multiparticulate formulations (e.g., nanoparticle formulations), and mixed immediate and controlled release formulations.
• the pharmaceutical compositions further include pH adjusting agents or buffering agents which include acids such as acetic, boric, citric, lactic, phosphoric and hydrochloric acids; bases such as sodium hydroxide, sodium phosphate, sodium borate, sodium citrate, sodium acetate, sodium lactate and tris- hy droxymethylaminomethane; and buffers such as citrate/dextrose, sodium bicarbonate and ammonium chloride.
• acids such as acetic, boric, citric, lactic, phosphoric and hydrochloric acids
• bases such as sodium hydroxide, sodium phosphate, sodium borate, sodium citrate, sodium acetate, sodium lactate and tris- hy droxymethylaminomethane
• buffers such as citrate/dextrose, sodium bicarbonate and ammonium chloride.
• acids, bases and buffers are included in an amount required to maintain pH of the composition in an acceptable range.
• the pharmaceutical compositions include one or more salts in an amount required to bring osmolality of the composition into an acceptable range.
• Such salts include those having sodium, potassium or ammonium cations and chloride, citrate, ascorbate, borate, phosphate, bicarbonate, sulfate, thiosulfate or bisulfite anions; suitable salts include sodium chloride, potassium chloride, sodium thiosulfate, sodium bisulfite and ammonium sulfate.
• the pharmaceutical compositions further include diluent which are used to stabilize compounds because they can provide a more stable environment.
• Salts dissolved in buffered solutions are utilized as diluents in the art, including, but not limited to a phosphate buffered saline solution.
• diluents increase bulk of the composition to facilitate compression or create sufficient bulk for homogenous blend for capsule filling.
• Such compounds can include e.g., lactose, starch, mannitol, sorbitol, dextrose, microcrystalline cellulose such as Avicel ® ; dibasic calcium phosphate, dicalcium phosphate dihydrate; tricalcium phosphate, calcium phosphate; anhydrous lactose, spray-dried lactose; pregelatinized starch, compressible sugar, such as Di-Pac ® (Amstar); mannitol, hydroxypropylmethylcellulose, hydroxypropylmethylcellulose acetate stearate, sucrose-based diluents, confectioner's sugar; monobasic calcium sulfate monohydrate, calcium sulfate dihydrate; calcium lactate trihydrate, dextrates; hydrolyzed cereal solids, amylose; powdered cellulose, calcium carbonate; glycine, kaolin; mannitol, sodium chloride; inositol, bentonite, and the like.
• the pharmaceutical formulation can further comprise an additional therapeutic agent.
• the additional therapeutic agent can have anti-fibrotic effect.
• the additional therapeutic agent can be inhibitor of ligands such as growth factors, cytokines and matrix metalloproteinases (MMPs).
• MMPs matrix metalloproteinases
• the additional therapeutic agent can be inhibitor of TGF-b, ALK5, BMP-7, PDGF, platelet-derived growth factor, VEGF, TNF, HGF, IL-13, chemokine (C-C motif) ligand 2; CCR5, MMP, and TIMP.
• the additional therapeutic agent can be SHP-627 (FT011), Hydronidone (F351), PXS-25, Disitertide (P-144), Fresolimumab (GC-1008), LY2382770, STX-100, CWHM-12, SB-431542, THR-184, PF-06473871, RXI- 109, FG-3019, Imatinib, BOT-191, Nilotinib (AMN-107), Dasatinib, Nintedanib (BIBF- 1120), Sorafenib (BAY 43-9006), Thalidomide, Pomalidomide, Etanercept, Belimumab, Refanalin (BB-3), Dectrekumab (QAX-576), Tralokinumab, Anakinra, Rilonacept, SAR156597, Carlumab (CNTO-888), Bindarit, Maraviroc, RS-504393, Actimmune, Interferon, alpha oral lo
• the anti-Gal3 antibodies disclosed herein are administered for therapeutic applications.
• the anti-Gal3 antibody is administered once per day, twice per day, three times per day or more.
• the anti-Gal3 antibody is administered daily, every day, every alternate day, five days a week, once a week, every other week, two weeks per month, three weeks per month, once a month, twice a month, three times per month, or more.
• the anti-Gal3 antibody is administered for at least 1 month, 2 months, 3 months, 4 months, 5 months, 6 months, 7 months, 8 months, 9 months, 10 months, 11 months, 12 months, 18 months, 2 years, 3 years, or more.
• the administration of the anti-Gal3 antibody is given continuously; alternatively, the dose of the anti-Gal3 antibody being administered is temporarily reduced or temporarily suspended for a certain length of time (i.e., a“drug holiday”).
• the length of the drug holiday varies between 2 days and 1 year, including by way of example only, 2 days, 3 days, 4 days, 5 days, 6 days, 7 days, 10 days, 12 days, 15 days, 20 days, 28 days, 35 days, 50 days, 70 days, 100 days, 120 days, 150 days, 180 days, 200 days, 250 days, 280 days, 300 days, 320 days, 350 days, or 365 days.
• the dose reduction during a drug holiday is from 10%-100%, including, by way of example only, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, or 100%.
• the amount of a given agent that correspond to such an amount varies depending upon factors such as the particular compound, the severity of the disease, the identity (e.g., weight) of the subject or host in need of treatment, but nevertheless is routinely determined in a manner known in the art according to the particular circumstances surrounding the case, including, e.g., the specific agent being administered, the route of administration, and the subject or host being treated.
• the desired dose is conveniently presented in a single dose or as divided doses administered simultaneously (or over a short period of time) or at appropriate intervals, for example as two, three, four or more sub-doses per day.
• toxicity and therapeutic efficacy of such therapeutic regimens are determined by standard pharmaceutical procedures in cell cultures or experimental animals, including, but not limited to, the determination of the LD50 (the dose lethal to 50% of the population) and the ED50 (the dose therapeutically effective in 50% of the population).
• the dose ratio between the toxic and therapeutic effects is the therapeutic index and it is expressed as the ratio between LD50 and ED50.
• Compounds exhibiting high therapeutic indices are preferred.
• the data obtained from cell culture assays and animal studies are used in formulating a range of dosage for use in human.
• the dosage of such compounds lies preferably within a range of circulating concentrations that include the ED50 with minimal toxicity. The dosage varies within this range depending upon the dosage form employed and the route of administration utilized.
• kits and articles of manufacture for use with one or more of the compositions and methods described herein.
• Such kits include a carrier, package, or container that is compartmentalized to receive one or more containers such as vials, tubes, and the like, each of the container(s) comprising one of the separate elements to be used in a method described herein.
• Suitable containers include, for example, bottles, vials, syringes, and test tubes.
• the containers are formed from a variety of materials such as glass or plastic.
• the articles of manufacture provided herein contain packaging materials.
• packaging materials include, but are not limited to, blister packs, bottles, tubes, bags, containers, bottles, and any packaging material suitable for a selected formulation and intended mode of administration and treatment.
• the container(s) include an anti-Gal3 antibody as disclosed herein, host cells for producing one or more antibodies described herein, and/or vectors comprising nucleic acid molecules that encode the antibodies described herein.
• kits optionally include an identifying description or label or instructions relating to its use in the methods described herein.
• a kit typically includes labels listing contents and/or instructions for use, and package inserts with instructions for use. A set of instructions will also typically be included.
• a label is on or associated with the container.
• a label is on a container when letters, numbers or other characters forming the label are attached, molded or etched into the container itself; a label is associated with a container when it is present within a receptacle or carrier that also holds the container, e.g., as a package insert.
• a label is used to indicate that the contents are to be used for a specific therapeutic application. The label also indicates directions for use of the contents, such as in the methods described herein.
• the pharmaceutical compositions are presented in a pack or dispenser device which contains one or more unit dosage forms containing a compound provided herein.
• the pack for example, contains metal or plastic foil, such as a blister pack.
• the pack or dispenser device is accompanied by instructions for administration.
• the pack or dispenser is also accompanied with a notice associated with the container in form prescribed by a governmental agency regulating the manufacture, use, or sale of pharmaceuticals, which notice is reflective of approval by the agency of the form of the drug for human or veterinary administration. Such notice, for example, is the labeling approved by the U.S. Food and Drug Administration for prescription drugs, or the approved product insert.
• compositions containing a compound provided herein formulated in a compatible pharmaceutical carrier are also prepared, placed in an appropriate container, and labeled for treatment of an indicated condition.
• fibrosis is characterized with one or more biomarkers such as collagen, extracellular matrix (ECM) molecules and enzymes, cytokines, proteomic markers, or genetic markers.
• the fibrosis biomarkers include, but are not limited to, collagens (I, III and IV), Procollagen N-terminal peptide, fibronectin, elastin, laminin, alpha-smooth muscle actin (a-SMA), hyaluronic acid (HA), proteoglycans, YKL- 40,TIMP-1, TIMP-2, MMP-2, MMP-9, TGFb, TNFa, angiotensin-II, microfibril-associated protein 4 (MFAP-4), tropomyosin, SNP of AZIN1, TLR4, TRPM5, AQP2, or STXBP5L.
• the expression or absence of certain biomarkers is associated with one or more fibrotic diseases. The increase or reduction of such biomarkers when treated
• the fibrosis biomarker is alpha-smooth muscle actin (a-SMA).
• a-SMA is a 42kDa actin isoform that predominates within vascular smooth-muscle cells and are involved in fibro genesis.
• Myofibroblasts are a form of fibroblast cells that has differentiated partially towards a smooth muscle phenotype.
• myofibroblasts can contract by using cytoskeletal proteins including a-SMA.
• a-SMA In several fibrotic diseases, it has been observed that there is an accumulation of myofibroblasts, leading to expansion of the extracellular matrix.
• altered expression e.g., elevated expression
• a-SMA correlates with the activation of myofibroblasts and in further cases, serve as a fibrosis biomarker.
• the fibrosis biomarker is fibronectin.
• Fibronectin is a high molecular weight (-440 kDa) glycoprotein within the extracellular matrix and further binds to integrins, collagens, fibrins, and heparan sulfate proteoglycans.
• Fibronectin plays a major role in cell adhesion, growth, migration, and differentiation, and is further involved in wound healing among a plethora of functions.
• Fibronectin can be soluble plasma fibronectin or insoluble cellular fibronectin, and can be Type I, II, or III. Altered expression (e.g., decreased expression) of fibronectin is associated with fibrosis.
• the fibrosis biomarker is transforming growth factor (TGF)-beta 1.
• TGF-b1 is a polypeptide member of the TGF-beta superfamily of cytokines and TGF-b1 is involved in cell growth, cell proliferation, cell differentiation, and apoptosis.
• a collagen-producing cell e.g., a fibroblast cell, is activated by a fibrogenic cytokine such as TGF-b1.
• TGF-b1 is proposed to be a master regulator and a potent inducer of ECM synthesis.
• TGF-b1 is produced by a variety of cells such as macrophages, neutrophils, activated alveolar epithelial cells, endothelial cells, fibroblasts, and myofibroblasts. Activation of TGF-b1 leads to enhanced expression of proinflammatory and fibrogenic cytokines such as TNF-a, PDGF, IL-1b, and/or IL-13, further enhancing and perpetuating the fibrotic response.
• proinflammatory and fibrogenic cytokines such as TNF-a, PDGF, IL-1b, and/or IL-13, further enhancing and perpetuating the fibrotic response.
• administering modulates the presence and/or expression of one or more fibrosis biomarkers.
• the anti-Gal3 antibody alters the presence or absence or the expression of one or more fibrosis biomarkers selected from collagens (I, III and IV), Procollagen N- terminal peptide, fibronectin, elastin, laminin, alpha-smooth muscle actin (a-SMA), hyaluronic acid (HA), proteoglycans, YKL-40,TIMP-1, TIMP-2, MMP-2, MMP-9, TGFb, TNFa, angiotensin-II, microfibril-associated protein 4 (MFAP-4), tropomyosin, SNP of AZIN1, TLR4, TRPM5, AQP2, and STXBP5L.
• the anti-Gal3 antibody alters the presence or absence or the expression of a-SMA, fibronectin, TGF-b1, or a combination thereof.
• administration of an anti-Gal3 antibody at a tissue site of interest leads to a decrease in the expression of a-SMA.
• administration of an anti-Gal3 antibody at a tissue site of interest leads to an increase in the expression of fibronectin.
• administration of an anti-Gal3 antibody at a tissue site of interest leads to a decrease in the expression of TGF-b1.
• one or more of the fibrosis biomarkers are utilized for monitoring the presence or absence of fibrosis, or the progression of fibrosis.
• the reduced expression of the fibrosis biomarkers disclosed herein can indicate reduction of tissue fibrosis.
• the expression of the at least one fibrosis biomarker in the tissue treated with the anti-Gal3 antibody is different than expression of the at least one fibrosis biomarker in a control tissue treated with a control antibody.
• the control antibody is an anti-Gal3 antibody that does not bind to one or more epitopes described above and/or does not disrupt the interaction between Gal3 and TIM-3.
• the control antibody is an IgG2b antibody, e.g., a murine IgG2b (mIgG2b) antibody.
• the expression of the at least one fibrosis biomarker in the tissue treated with the anti-Gal3 antibody is less than expression of the at least one fibrosis biomarker in a control tissue treated with a mIgG2b antibody.
• the anti-Gal3 antibody can be administered to treat one or more fibrotic diseases.
• the fibrotic diseases can be liver fibrosis.
• the fibrotic disease can be pulmonary fibrosis.
• the fibrotic disease can be cystic fibrosis, idiopathic pulmonary fibrosis, myelofibrosis, interstitial lung disease, hepatic fibrosis, progressive massive fibrosis, cirrhosis, renal fibrosis, cardiac fibrosis, pneumonitis, pulmonary fibrosis, pancreatic fibrosis, myelofibrosis, intestinal fibrosis, arthrofibrosis, retinal fibrosis, hepatitis C-associated fibrosis, or nephrogenic systemic fibrosis.
• the anti-Gal3 antibody can be administered to fibrotic diseases associated with expression of a-SMA or fibronectin.
• the fibrotic diseases associated with increased a-SMA can be renal fibrosis, hepatic fibrosis, cirrhosis, hepatitis C-associated fibrosis, cardiac fibrosis, pulmonary fibrosis, interstitial lung disease, idiopathic pulmonary fibrosis, pneumonitis, myelofibrosis, arthrofibrosis, retinal fibrosis, or nephrogenic systemic fibrosis.
• the fibrotic diseases associated with fibronectin expression can be cystic fibrosis, pulmonary fibrosis, idiopathic pulmonary fibrosis, myelofibrosis, interstitial lung disease, hepatic fibrosis, progressive massive fibrosis, cirrhosis, renal fibrosis, cardiac fibrosis, pneumonitis, pulmonary fibrosis, pancreatic fibrosis, myelofibrosis, intestinal fibrosis, arthrofibrosis, retinal fibronectin, hepatitis C-associated fibrosis, or nephrogenic systemic fibrosis.
• the subject of the treatment can be diagnosed with a fibrotic disease.
• the treatment subject can be human, rat, mouse, or other animal.
• the treatment subject can be mammal.
• the mammal can be human.
• the mammal can be primate.
• the primates can be chimpanzees or gorillas.
• the anti-Gal3 antibody binds to specific epitopes within a Gal3 protein. In some cases, anti-Gal3 antibody can bind to at least 1, 2, 3, 4, 5, 6, 10, 15, or 20 amino acid residues within a Gal3 region that corresponds to residues 2-21 of SEQ ID NO: 1 (hGal3). In some embodiments, the anti-Gal3 can bind to at least 1, 2, 3, 4, 5, 6, 10, 15, or 20 amino acid residues corresponding to residues 42-71 of SEQ ID NO: 1. In other embodiments, the anti-Gal3 can bind to at least 1, 2, 3, 4, 5, 6, 10, 15, 20, 30, 40, or 50 amino acid residues corresponding to residues 42-91 of SEQ ID NO: 1.
• the anti-Gal3 antibody can bind to at least 1, 2, 3, 4, 5, 6, 10, 15, or 20 amino acid residues corresponding to residues 72-91 of SEQ ID NO: 1.
• the anti-Gal3 antibody can bind to Gal3 at one or more residues that correspond to residues 2-21 and 42-71; 42-91; 2-21 and 72-91; or 2-21 and 42-91.
• Gal3 and TIM-3 sequences are listed in Table 1.
• the anti-Gal3 antibody may bind to at least 1, 2, 3, 4, 5, 6, 10, 15, or 20 amino acid residues within a peptide illustrated in Table 2 (and shown in Fig. 11 A).
• the anti-Gal3 antibody may bind to at least 1, 2, 3, 4, 5, 6, 10, 15, or 20 amino acid residues within peptide_l (SEQ ID NO: 3), peptide_5 (SEQ ID NO: 4), peptide_6 (SEQ ID NO: 5), or peptide_8 (SEQ ID NO: 6). In some embodiments, the anti-Gal3 antibody may bind to at least 1, 2, 3, 4, 5, 6, 10, 15, or 20 amino acid residues within peptide_l (SEQ ID NO: 3). In some embodiments, the anti-Gal3 antibody may bind to at least 1, 2, 3, 4, 5, 6, 10, 15, or 20 amino acid residues within peptide_5 (SEQ ID NO: 4).
• the anti-Gal3 antibody may bind to at least 1, 2, 3, 4, 5, 6, 10, 15, or 20 amino acid residues within peptide_6 (SEQ ID NO: 5). In some embodiments, the anti-Gal3 antibody may bind to at least 1, 2, 3, 4, 5, 6, 10, 15, or 20 amino acid residues within peptide_8 (SEQ ID NO: 6).
• the anti-Gal3 antibody further disrupts an interaction between Gal3 and TIM-3.
• TIM-3 is a molecule expressed on immune cells, especially on T cells and can suppress immune response, e.g., T cell signaling, through the interaction with Gal3.
• the Gal3-TIM-3 antibody is designed based on the interface where Gal3 and TIM-3 interaction occurs.
• the interaction on Gal3 can occur at one or more residues selected from region 145-168, 149-168, 160-177, and/or 165-184, wherein the regions correspond to position 145-168, 149-168, 160-177, and 165-184 of SEQ ID NO: 1.
• the interaction on Gal3 can occur at one or more residues within region 145-177, wherein the region 145-177 correspond to position 145-177 of SEQ ID NO: 1.
• the interaction may occur at one or more residues within region 160-184, wherein region 160-184 correspond to position 160-184 of SEQ ID NO: 1.
• the interaction may occur at one or more residues within region 145-184, wherein region 145-184 correspond to position 145-168 of SEQ ID NO: 1.
• the Gal3-TIM-3 antibody disrupts an interaction between Gal3 and TIM-3, in which the interaction on Gal3 involves one or more residues selected from region 145-168, 149-168, 160-177, and/or 165-184 of SEQ ID NO: 1.
• the interaction on Gal3 can occur at one or more residues within region 145-177 of SEQ ID NO: 1.
• the interaction may occur at one or more residues within region 160-184 of SEQ ID NO: 1.
• the interaction may occur at one or more residues within region 145-184 of SEQ ID NO: 1.
• the interaction can occur at one or more residues of Gal3 selected from region 149-156, 152-171, 152-169, 152-168, 163-169, or 163-171, in which the regions correspond to positions 149-156, 152-171, 152-169, 152-168, 163-169, and 163-171 of SEQ ID NO: 1.
• the Gal3-TIM-3 antibody disrupts an interaction between Gal3 and TIM-3, in which the interaction on Gal3 involves one or more residues selected from region 149-156, 152-171, 152-169, 152-168, 163-169, or 163-171, in which the regions correspond to positions 149-156, 152-171, 152-169, 152-168, 163-169, and 163-171 of SEQ ID NO: 1.
• the interaction can occur at one or more residues of Gal3 selected from region 149-156, in which the region corresponds to position 149-156 of SEQ ID NO: 1.
• the interaction can occur at one or more residues of Gal3 within region 163-169, in which the region corresponds to position 163-169 of SEQ ID NO: 1.
• the interaction can occur at one or more residues of Gal3 within region 163-171, in which the region corresponds to 163-171 of SEQ ID NO: 1.
• the interaction can occur at one or more residues of Gal3 within region 152-169, in which the region corresponds to position 152-169 of SEQ ID NO: 1.
• the interaction can occur at one or more residues of Gal3 within region 152-171, in which the region corresponds to position 152-171 of SEQ ID NO: 1.
• the interaction can occur at one or more residues of Gal3 within region 163-171, in which the region corresponds to position 163- 171 of SEQ ID NO: 1.
• the Gal3-TIM-3 antibody disrupts an interaction between Gal3 and TIM-3, in which the interaction on Gal3 involves one or more residues selected from region 149-156, 152-171, 152-169, 152-168, 163-169, or 163-171 of SEQ ID NO: 1.
• the interaction can occur at one or more residues of Gal3 within region 149-156 of SEQ ID NO: 1.
• the interaction can occur at one or more residues of Gal3 within region 163-169 of SEQ ID NO: 1.
• the interaction can occur at one or more residues of Gal3 within region 163-171 of SEQ ID NO: 1.
• the interaction can occur at one or more residues of Gal3 within region 152-169 of SEQ ID NO: 1.
• the interaction can occur at one or more residues of Gal3 within region 152-171 of SEQ ID NO: 1.
• the interaction can occur at one or more residues of Gal3 within region 163-171 of SEQ ID NO: 1.
• the Gal3-TIM-3 antibody can interact with at least 1, 2, 3, 4, 5, 6, 10, 15, 20, 30, or 40 amino acid residues within a Gal3 region that interfaces with TIM-3 at the positions described herein.
• the interaction on TIM-3 can occur at one or more residues corresponding to positions 72-104 and/or 64-93, in which the residues correspond to position 90-122 and 82-111 of SEQ ID NO: 2.
• the interaction on TIM-3 can occur at one or more residues at positions 91-111, 107-117, 96-102, 100-106, and/or 92-119, in which the residues correspond to positions 91-111, 107-117, 96-102, 100-106, and 92-119 of SEQ ID NO: 2.
• the interaction on TIM-3 can occur at one or more residues at positions 91-117, 91-119, 96-117, 100-117, or 96-106.
• the Gal3 -TIM-3 disrupting antibody can be designed interact with at least 1, 2, 3, 4, 5, 6, 10, 15, 20, 30, or 40 amino acid residues within TIM-3 region that interfaces with Gal3 at the positions described herein.
• the interaction can occur at one or more residues of Gal3 selected from region 149-156, 152-168, 163-169, and/or 163-171 of SEQ ID NO: 1; and at one or more residues corresponding to positions 90-122 and/or 82-111 of SEQ ID NO: 2.
• the interaction can occur at one or more residues of Gal3 selected from region 149-156, 152-168, 163-169, and/or 163-171 of SEQ ID NO: 1; and at one or more residues at positions 91-111, 107-117, 96-102, 100-106, and/or 92-119 of SEQ ID NO: 2.
• the interaction on Gal3 can occur at one or more residues selected from region 145-168, 160-177, and/or 165-184 of SEQ ID NO: 1; and at one or more residues corresponding to positions 90-122 and/or 82-111 of SEQ ID NO: 2.
• the interaction on Gal3 can occur at one or more residues selected from region 145-168, 160-177, and/or 165-184 of SEQ ID NO: 1; and at one or more residues at positions 91-111, 107-117, 96-102, 100-106, and/or 92-119 of SEQ ID NO: 2.
• the Gal3-TIM-3 disrupting antibody can be designed interact with at least 1, 2, 3, 4, 5, 6, 10, 15, 20, 30, or 40 amino acid residues on Gal3 region and on TIM-3 that interface with each other at the positions described herein.
• the anti-Gal3 antibody used can be substituted with another anti-Gal3 antibody.
• This anti-Gal3 antibody may be selected from the group consisting of 2D10.2B2, 3B 11.2G2, 4A11.2B5, 4G2.2G6, 6H6.2D6, 7D8.2D8, 12G5.D7, 13A12.2E5, 13G4.2F8, 13H12.2F8, 14H10.2C9, 15F10.2D6, 15G7.2A7, 19B5.2E6, 19D9.2E5, 20D11.2C6, 20H5.A3, 23H9.2E4, 24D12.2H9, 846.1F5, 846.2H3, 846T.1H2, 9H2.2H10, IMT001-4, IMT006-1, IMT006-5, IMT006-8, and mIMT001 (IMT001).
• This anti-Gal3 antibody may be 2D10.2B2, 3B 11.2G2, 4A11.2B5, 4G2.2G6, 6H6.2D6, 7D8.2D8, 12G5.D7, 13A12.2E5, 13G4.2F8, 13H12.2F8, 14H10.2C9, 15F10.2D6, 15G7.2A7, 19B5.2E6, 19D9.2E5, 20D11.2C6, 20H5.A3, 23H9.2E4, 24D12.2H9, 846.1F5, 846.2H3, 846T.1H2, 9H2.2H10, IMT001-4, IMT006-1, IMT006-5, IMT006-8, or mIMT001, or any combination thereof.
• This anti-Gal3 antibody may be mIMT001.
• This anti-Gal3 antibody may be an antibody other than mIMT001.
• This anti-Gal3 antibody may be 4A11.2B5.
• This anti-Gal3 antibody may be one or more of IMT001-4, IMT006-1, IMT006-5, or IMT006-8.
• This anti-Gal3 antibody may be 4A11.2B5.
• This anti-Gal3 antibody may be one IMT001-4.
• This anti-Gal3 antibody may be IMT006-1.
• This anti-Gal3 antibody may be IMT006-5.
• This anti-Gal3 antibody may be IMT006-8.
• the antibody comprises one or more of the CDRS, VH, and/or VL of any one or more of these antibodies.
• A20 a mouse B lymphoma cell line, obtained from American Tissue and cell culture Collection (ATCC, Manassas, VA), was transfected with nucleic acid construct encoding a Flag-tagged human Gal3 protein or a Flag-tagged human PDL1 protein.
• the constructs additionally contain an antibiotics-resistant marker.
• the transformed cells were selected based on the antibiotics resistance to create A20 cells stably expressing the Flag- tagged human Gal3 protein (A20 Gal3 cells) or A20 cells stably expressing the Flag-tagged human PDL1 protein (A20 hPDL1 cells).
• This example describes various assays that have been conducted to evaluate the interaction between Gal3 and TIM-3.
• lanes 1-3 represents the results from lysate produced from the cells co-transfected with a plasmid encoding HA-tagged TIM-3 and a plasmid encoding Flag-tagged Gal3; cells co-transfected with a plasmid encoding HA-tagged TIM-3 and a plasmid encoding Flag-tagged Gal9, or cells co-transfected with a plasmid encoding HA-tagged TIM-3 and a plasmid encoding Flag-tagged CEACAM1, respectively.
• Protein G beads was added to the supernatant formed after the centrifugation and incubated by rotating at 4°C for 4 hours. The beads were then washed 3x with lysis buffer, followed by addition of lx SDS PAGE sample buffer. The samples containing the beads were boiled and separated on SDS- PAGE, transferred onto membrane. The membrane was then probed with ant-Flag antibodies. As shown in Fig. 2, human TIM-3 specifically pulled down Flag-tagged Gal3. In contrast, neither human Fc nor human PD1 Fc was able to pull down TIM-3. This shows that Gal3 does not bind to Fc or PD1 Fc and that the binding between Gal3 and TIM-3 is specific.
• the plates were slowly flipped 180 degrees and kept at the flipped position for 30 min. After plates were flipped back and removed from PBS, 200 ml solution from each well was removed and discarded and the remaining solution, about 100 ml in volume, was transfer into a 96-well plate. The cells were counted by flow cytometry analysis.
• A20 Gal3 cells were incubated with 10% FBS HBSS solution that contains with or without mouse TIM-3 Fc on ice for 20 minutes.
• cells were incubated with 10% FBS HBSS containing mentioned antibodies, then were added with 10% FBS HBSS containing mTIM-3 Fc for 20 min. Samples were centrifuged and pellet were added 10% FBS HBSS containing APC conjugated anti-hFc antibodies (Jackson ImmunoResearch, West Grove, PA) for 20 min. After spinning, live/dead cells were stained with Violet dead cell stain kit (Life Technologies). Stained cells were subjected to flow analysis.
• Fig. 4 shows that mTIM-3 was able to bind to dead cells and the Gal 3 protein on live cells and that Gal3 and dead cells bind different epitopes on TIM-3.
• Fig. 4A shows live A20 cells (the peak on the left) and dead A20 cells (the peak on the right) by flow cytometry analysis.
• TIM-3 Fc binds both dead cells (Fig. 4C, row 2) and Gal3 expressed on live cells (Fig. 4B, row 2).
• mTIM-3 monoclonal antibody RMT3-23 blocked the binding of TIM-3 to dead cells (Fig. 4C, row 4), but not to Gal3 expressed on live cells (Fig. 4B, row 4).
• ELISA assays were also performed to test the interaction between Gal3 and TIM-3.
• 96 well ELISA plates (ThermoFisher Scientific) were coated with mouse Gal3 protein (BioLegend, San Diego, CA) in PBS or human Gal9 protein (R&D systems) in PBS or phosphatidylserine (PS) (Sigma) in ethanol and incubated at 4 °C for overnight.
• the plate was washed three times with TBST and then blocked with PBS buffer containing 2% BSA at room temperature for 1 hour.
• PBS buffer containing 2% BSA room temperature for 1 hour.
• different anti Gal3 antibodies i.e.
• mGal3 polyclonal antibody R&D systems
• mAb IMT001 also described in WO 2019/023247, hereby expressly incorporated by reference in its entirety
• mAb M3/38 Thermofisher Scientific
• Fig. 5A mGal3 polyclonal antibody
• the antibodies were incubated for 10 minutes and mouse TIM-3 Fc were then added to the plates and incubated for an additional one-hour incubation. Plates were then washed for three times and followed by incubation with anti-human-IgG-HRP (Jackson ImmunoResearch) for 1 h at room temperature.
• mouse Gal3 protein (BioLegend) in PBS (groups 1 and 2) or PS (Sigma-Aldrich, St. Louis, MO) in ethanol (groups 3 and 4) were coated on the plates and incubated at 4 °C overnight.
• Anti mTIM-3 mouse antibodies, mAb RMT3-23 (Bio X cell) was added to the coated plates for groups 2 and 4 only.
• Secondary anti human-IgG-HRP antibody and substrates were added as described above to detect the binding of the mTIM-3 to mGal3 or PS.
• ELISA plates were coated with either mGal3 (groups 1 and 2, or hGal9 (groups 3 and 4).
• Mouse TIM-3 Fc protein R&D systems
• Secondary anti human-IgG-HRP antibody and substrates were added as described above to detect the binding of mTIM-3-Fc to mGal3 or hGal9.
• FIG. 6A shows results of flow cytometry analysis that shows hGal3 expression level in these clones.
• Cells of A20 or the A20 Gal3 clones were mixed with mouse DO11.10 T cells. The mixture was placed to each well of flat 96-well plates and OVA323- 339 peptide (Invivogen, San Diego, CA) was then added to the plates. After overnight incubation, supernatant was used for measuring IL-2 production of the T cells by ELISA (Thermo Fisher Scientific).
• Fig. 6B shows the IL-2 production by the mouse DOl 1.10 T cells were significantly reduced when mixed with any of the three mouse A20 cell clones as compared to when the T cells were mixed with parental A20 cells (Fig. 6B).
• Example 4 An anti-Gal3 antibody shows anti-tumor activity in mouse lung metastasis model
• mice were administrated intraperitoneally with 10 mg/Kg of mouse IgG2b (Bio X Cell, West Riverside, NH) on day 0, 3, 7 and 10, mPDl antibody (Bio X Cell, West Riverside, NH) on day 0, 3 and 7 or Gal3 antibody IMT001 on day 0, 3, 7, 10 and 15.
• the Gal3 antibody clone IMT001 used in this experiment recognizes an epitope corresponding to peptide_5 (PGAYPGQAPPGAYPGQAPPG, SEQ ID NO: 7) on Gal3.
• the animals were humanely sacrificed and lung tissues were removed and fixed in a 10% buffered formaldehyde solution. The number of black metastatic colonies on one surface of the left lobes in the lungs were counted (Fig. 7B). Results were expressed as mean ⁇ SEM. The statistical analysis was performed in comparison with IgG control group using one-way ANOVA.
• Fig. 7A shows that the mean fluorescence intensity (MFI) of B 16F10 cells stained with anti-mGal3 antibody is nearly ten-fold higher than that of cells stained with isotype control antibody.
• B 16F10 cells were incubated with 10% FBS HBSS solution that contains control rat IgG PE or rat anti mouse Gal3 PE antibody (Thermo Fisher Scientific, Waltham, MA) on ice for 20 minutes. After spinning, live/dead cells were stained with Violet dead cell stain kit (Thermo Fisher Scientific, Waltham, MA). Stained cells were subjected to flow analysis.
• Fig. 7B shows representative images of the whole lung from three treated groups. Fig.
• FIG. 7C shows numbers of metastatic colonies on surface of the left lung lobe (Mean ⁇ SEM).
• Fig. 7D and Fig. 7E shows lung weight and body weight of different treatment groups (Mean ⁇ SEM).
• the Gal3 antibody treated group showed significant (about 46%) reduction of tumor number (p ⁇ 0.01) as indicated by the number of black metastatic colonies.
• anti- mouse PD1 antibody 29F did not show significant anti-tumor effect in this lung metastasis model (p>0.05).
• Example 5 An anti-Gal3 antibody shows anti-tumor activity in 4T1 orthotopic tumor induced lung metastasis model
• mice were placed in a facility accredited by the Association for Assessment and Accreditation of Laboratory Animal Care upon arrival.
• 4T1 cells were collected, washed and resuspended in PBS.
• Mice were anesthetized by inhalation anesthetic (3 to 5 % Isoflurane in medical grade air).
• mice Following injection of the 4T1 cells, the mice were administrated intraperitoneally with 10 mg/Kg of mouse IgG2b (Bio X Cell) on day 0, 3 and 7 or Gal3 antibody IMT001 on day 0, 3, 7, 10 and 14. The tumor volumes and body weights were monitored twice per week. On day 30, the mice were humanely sacrificed and lung tissues were inflated with 30% sucrose, removed and fixed in Bourn's solution (Sigma- Aldrich). The number of metastatic colonies on one surface of the left lobes in the lungs was counted. Results were expressed as mean ⁇ SEM. The statistical analysis was performed in comparison with IgG control group using unpaired T test.
• Fig. 8A shows representative images of the whole lung from the treated groups.
• Fig. 8B shows body weight of different treatment groups (Mean ⁇ SEM).
• Fig. 8C shows numbers of metastatic colonies on one surface of the left lung lobe (Mean ⁇ SEM).
• animals treated with the monoclonal anti-human Gal3 antibody showed significant reduction of lung metastatic number (p ⁇ 0.05).
• Example 6 An anti-Gal3 antibody shows anti-tumor activity in primary mouse RENCA renal tumor model
• mice were anesthetized by inhalation anesthetic (3 to 5 % Isofhirane in medical grade air) Renca cells were washed and resuspended in PBS before subcutaneously injecting 2 x 10 5 cells in 0.1 mL PBS using a syringe with a 25-ga needle.
• mice were i.p administrated with either 10 mg/Kg of mouse IgG2b (Bio X Cell) or mPDl antibody (BioXCell) on day 0, 3 and 7 or Gal3 antibody ⁇ MT001 antibody on day 0, 3, 7, 10 and 14.
• the animals were humanely sacrificed when tumor volume in the control group reached between 2000-2500 mm 3 . Results were expressed as mean ⁇ SEM. The statistical analysis was performed in comparison with IgG2b control group using unpaired t test.
• the results show the anti-tumor activity of Gal3 antibody (IMT001) in a renal carcinoma model. As compared to isotype control group, the anti-Gal3 antibody treated group showed significant (about 35%) reduction of tumor growth (p ⁇ 0.05), while anti-PD-1 antibody had no effect (Fig. 9).
• Example 7 An anti-Gal3 antibody shows anti-tumor activity in primary mouse MC38 COLON tumor model
• mice were randomly assigned into two groups (n 8).
• a peptide array containing 24 20 amino acid peptides overlapping by 10 amino acid and covering the whole human Gal3 protein sequence was synthesized (Genscript, Piscataway, NJ) (Fig. 11A). 20 mg of each peptide was dot blotted onto a membrane. After blocking with 5% milk in PBS, the membrane was incubated with lug/ml IMT001 antibody at 4C for overnight. After three times of washes, the membrane was incubated with 1:8000 diluted anti mlgG HRP antibody (Southern Biotech, Birmingham, AL) for one hour. After three times of washes, the membrane was incubated with Western ECL blotting substrates (Bio-Rad, Hercules, CA) and developed (Fig.
• Peptides 5 (SEQ ID NO: 7) and 6 (SEQ ID NO: 8) showed good signal, indicating the epitope on hGal3 to which IMT001 binds is [0319]
• 8 shorter peptides derived from it were synthesized (Genscript, Piscataway, NJ) (Fig. 11C) and their binding by IMT001 was determined by ELISA (Fig. 11D).
• 96 well Elisa plate (Thermo Scientific) was coated with these peptides in PBS buffer and incubated at 4 °C for overnight.
• the plate was washed three times with TBST and then blocked with PBST buffer containing 2% BSA at room temperature for 1 h.
• IMT001 at 10 mg/mL was incubated in the coated Elisa plate at room temperature for 1 h.
• the plate was washed for three times and followed by incubation with 1 : 8000 dilution of anti-mouse-IgG-HRP for 1 h at room temperature.
• the color was developed with 100 mL of TMB subtract (GeneTex) after three time washes with TBST and stopped by 50 mL of 1 N HC1.
• the optical density (OD) was read at 450 nm. The results were expressed as the average OD of duplicates ⁇ SD.
• Pep-2 showed good signal, indicating the binding epitope of IMT001 on human Gal3 is GQAPPGAYPG.
• mice were implanted with 1 million B 16F10 cells I.V. Mice were then treated with IMT001 or isotype control (10mg/kg I.P.) on Day 0, 1, 3 and 7 and sacrificed on day 8 for lung immune cell isolation and phenotyping. Cells were isolated from the lungs, and then stained with fluorescently labeled antibodies against lymphocyte markers CD3, CD4, CD8, CD19, DX5 and analyzed by flow cytometry. The results in Fig.
• Immunohistochemistry (IHC) experiment was conducted to detect Gal3 expression in human lung cancers.
• the frozen tissue slides of human lung cancers (US Biomax Inc.) were fixed in 10% neutral buffered formalin (Fisher Scientific) at room temperature for 10 min and washed twice for 5 min in PBS. Endogenous peroxidase was blocked by immersing slides in 3% H2O2 at room temperature for 10 min. After washing twice in PBS for 5 min, the slides were incubated in streptavidin reagent (Molecular Probes) for 15 min at room temperature, followed by rinse thoroughly with PBS, incubation in biotin reagent (Molecular Probes) for 15 min and another rinse in PBS to block the endogenous biotin background.
• streptavidin reagent Molecular Probes
• the slides were blocked with 10% FBS, 200 mg/mL mlgG and 200 mg/mL hlgG for 1 h, incubated with 1 st antibody IMT001 -biotin (5 mg/mL) at 4 °C for overnight, washed three times, then followed by incubation with 2 nd antibody HRP avidin (BioLegend) at 1: 100 for 1 h and washes for three time.
• the staining was developed by incubating with DAB substrate (Vector Laboratories) and stopped by immersing slides in distilled water.
• Results in Fig. 13A-B show that the canopy shaped tumor associated macrophages in those human lung cancer slides (squamous cell carcinoma and adenocarcinoma) express Gal3, as evidenced by their positive staining by IMT001.
• First Human CD 14 monocytes were isolated from peripheral blood mononuclear cells (PBMC) with a CD 14 cell positive selection kit (Miltenyi, Auburn, CA) and differentiated into dendritic cells (DC), or into Ml macrophages, or into M2 macrophages in the presence of GM-CSF plus IL-4, or GM-CSF, or M-CSF (Rocky Hill, NJ), respectively. Then flow cytometry analysis was performed to detect Gal3 expression on human dendritic cells (DC), Ml and M2 macrophage cells.
• PBMC peripheral blood mononuclear cells
• DC dendritic cells
• Ml macrophages or into M2 macrophages in the presence of GM-CSF plus IL-4, or GM-CSF, or M-CSF (Rocky Hill, NJ)
• flow cytometry analysis was performed to detect Gal3 expression on human dendritic cells (DC), Ml and M2 macrophage cells.
• MFI mean fluorescence intensity
• Gal3 The expression of Gal3 on mouse macrophages was detected by both IHC and Flow cytometry analysis. In the details of IHC, 100,000 cells per well were seeded ovemight. On the second day, cells were washed once with PBS, fixed with 3% formaldehyde at room temperature for 10 min, then washed twice with PBS and blocked in PBS containing 10% FBS and 200 mg/mL for 1 h at room temperature.
• Fig. 15C shows that, as compared to that of cells stained with isotype control antibody, the mean fluorescence intensity (MFI) of RAW cells stained with IMT001 is more than 10-folds higher.
• IMT001 The ability of IMT001 to activate T cell was demonstrated by Mixed Lymphocyte Reaction (MLR) assay.
• MLR Mixed Lymphocyte Reaction
• RAW mouse macrophage cells were mixed with DO 11 mouse T cells at 1: 1 ratio, treated with OVA peptide, and cultured in the presence of mlgG (BD Biosciences), anti mPDl antibody 29F (BioXCell) or IMT001 at 10 mg/ml for overnight 37° C. 50 pi of the culture medium was taken for mIL-2 measurement.
• the mIL-2 production was measured according to the commercial kit mouse IL-2 Elisa Ready-SET-Go from eBio science.
• Fig. 15D shows that in comparison of mlgG or mPDl antibody treated cells, IMT001 antibody, but not mouse PD-1 antibody 29F, enhanced the production of IL-2, indicating the reversion of macrophage induced T-cell inactivation.
• Gal3-targeted antibodies with the ability to block the interaction of Gal3 and TIM-3
• purified Gal3 and TIM-3 proteins were incubated in the presence (or absence) of various Gal3-targeted or control antibodies, or without antibody, and protein interaction was evaluated by ELISA.
• Human Gal3 protein (Aero Biosystems, GA3-H5129) was diluted in phosphate buffered saline (PBS) (Corning) to a concentration of 0.5 mg/ml and 100 ul of the diluted hGal3 was added to each well of a 96-well ELISA plate (Thermo Fisher, 44-2404-21). After incubating the plate at 4°C overnight, the plate was washed three times with 300 ml of PBS with 0.05% TWEEN (VWR) (PBST) per well. The plate was then blocked for an hour with 200 m ⁇ of 2% bovine serum albumin (BSA) (Sigma) in PBST per well at room temperature with gentle rocking.
• PBS phosphate buffered saline
• anti-Gal3 antibodies exhibited differential ability to block the interaction of Gal3 and TIM-3.
• Each of the antibodies mabl, mab2, mab4, and IMT001 disrupted Gal3-TIM-3 binding, resulting a reduction in Gal3-TIM-3 binding to 14%, 4%, 10%, and 7% of unblocked control (no antibody), respectively.
• Antibodies mab3 and mab5 moderately disrupted the Gal3-TIM-3 binding, reducing the interaction to 34% and 59% of unblocked controls, respectively.
• mab6 and mab7 did not impact Gal3-TIM-3 binding.
• a library of 20 amino acid peptides each representing a certain regions of hGal3 (SEQ ID NO: 1) was produced. At least 2 ug/ml of the produced hGal3 peptide: peptide 1 (SEQ ID NO: 3), 5 (SEQ ID NO: 7), 6 (SEQ ID NO: 8), 8 (SEQ ID NO: 10), or 23 (SEQ ID NO: 25) in 50 ul of PBS was added to the wells of a 96-well ELISA plate (Thermo Fisher, 44-2404-21).
• 0.1 ug/ml of full-length human Galectin-3 protein (Aero Biosystems, GA3-H5129) in 100 ul of PBS was added to the wells of the ELISA plate. After incubating the plate at 4°C overnight, the plate was washed three times with 300 ul of PBST per well. The plate was then blocked for an hour with 200 ul of 2% BSA in PBST per well at room temperature with gentle rocking. Thereafter, the 2% BSA in PBST was removed and 100 ul of 0.1 ug/ml of antibody in 2% BSA in PBST was added to the wells (Fig. 17A-B). As for negative control group, the antibodies were applied without the hGal3 peptides or the hGal3 protein.
• the plate was incubated for an hour at room temperature with gentle rocking and then washed three times with 300 ml of PBST per well. Subsequently, HRP conjugated secondary antibodies were added to the wells and incubated for 30 minutes at room temperature with gentle rocking. After washing the plate three times with 300 m ⁇ of PBST per well, 100 ul of TMB substrate (Fisher Scientific, 34029) was then added to each well. The reaction was stopped with 50 ul of 1M HC1 (VWR) per well and the plate was read using a plate reader (Molecular Devices) at absorbance of 450 nm.
• biotinylated anti-Gal3 antibodies mabl, mab4, and mab5 (0.2 ug/ml) in 2% BSA in PBST were added to the wells together and incubated for an hour at room temperature with gentle rocking.
• the antibodies were not added to the wells of a third control group,“blank,” to incubate. Thereafter, the plate was washed three times with 300 pi of PBST per well, and 100 ul of avidin-HRP (1: 1000) (Jackson ImmunoResearch) was then added to each well.
• the plate was again incubated at room temperature for 30 minutes with gentle rocking and then washed three times with 300 pi of PBST per well. 100 ul of TMB substrate (Fisher Scientific, 34029) was then added to each well. The reaction was stopped with 50 ul of 1 M HC1 (VWR) per well and the plate was read using a plate reader (Molecular Devices) at absorbance of 450 nm.
• Antibody mab4 was shown to have the strongest affinity with KD atl.2 nM, with a k on of 1.05E+6 M -1 sec -1 and a k 0ff of 1.32E-3 sec -1 (Fig. 19B).
• Antibody mabl exhibited the second strongest affinity with KD at 13.5 nM with a k on of 1.7E+6 M -1 sec -1 and a k off of 2.29E-2 sec -1 .
• Antibody mab5 exhibited the weakest affinity with KD at 32.3 nM with a k on of 1.41E+6 M -1 sec -1 and a k 0ff of 4.57 sec -1 . These binding affinities were qualitatively consistent with the predicted relative affinities from the antibody binning study in Example 15.
• PBMCs Human peripheral blood mononuclear cells
• Fig. 21A-C The sequences of the cross-linked peptides at the linked sites were determined (Fig. 21A-C).
• the Gal3-TIM-3 blocking epitopes of Gal3 were not included in the crystal structure models of Gal3 due to intrinsic unstructured features of this region.
• the amino acid numeration depicted in Fig. 21 A reflects the amino acid number in the mature protein after signal peptide processing. See Table 4 which shows the amino acid numbering corresponding to SEQ ID NO: 2.
• the anti-Gal3 antibodies mabl, mab2, mab3, mab4, and mab5 appeared to bind to distinct epitopes as identified in peptide binding assays corresponding to the first 2-21 N-terminal amino acids of Gal3 and residues 52-71 and 72-91 of hGal3 (SEQ ID NO: 1) as described in Example 14, suggesting that a secondary or tertiary structure may be related to the N-terminal regions of Gal3, wherein the region mediates the Gal-TIM-3 interface and binds to the Gal3 -TIM-3 blocking antibodies.
• Table 4 shows the respective amino acid numberings from Fig. 21A and
• IMT001 was administered to murine kidney fibrosis disease model. Since IMT001 also exhibits Gal3-TIM- 3 blocking activity, the study showed the effect of Gal3-TIM-3 disruption on kidney fibrosis as well.
• UUO Unilateral urethral obstruction
• SMA smooth muscle actin
• fibronectin En-ETTTA 1: 1000 dilution
• Example 20 Reduction of murine liver fibrosis with anti-Gal3 antibody
• the Gal3-TIM-3 blocking antibody IMT001 was used on non-obese diabetic and inflammation (N-IF) mouse genetic model of fibrosis to study the effect of Gal3 inhibition on liver fibrosis.
• N-IF mice were generated by crossing 24abNO ⁇ mice and NOD.Rag2-/- mouse strains. The N-IF mice were backcrossed with the B6.Rag2-/- mouse strains for 10 generations. Mice (male and female) were separated into two groups: IMT001 antibody treatment group and mIgG2b antibody control group. Antibodies were administered to the animals every fourth day for 40 days, at 10 mg/kg body weight and the animals were subsequently sacrificed. All efforts were made to minimize suffering. Liver and Kidney tissues were collected and snap frozen in liquid nitrogen for western blot analysis. Tissue processing and western blot analysis were performed as in Example 19. GAPDH was used a loading control reference.
• Example 21 Effect of anti-Gal3 antibodies with/without Gal3-TIM-3 disrupting property on fibrosis
• NRK-49F Normal rat kidney fibroblast cells
• RPMI medium containing 10% fetal calf serum and penicillin/streptomycin antibiotics.
• the culture medium is removed and is replaced with RPMI with penicillin/streptomycin but without fetal calf serum to induce serum starvation for 24 hours, whereupon quiescent cells are treated with control mIgG2b (10 mg/ml), TGF-b1 (1 ng/ml) or Galectin-3 antibody IMT001 (10 mg/ml), and lysed in protein extraction buffer.
• the lysates are analyzed by Western blotting for the induction of fibroblast-to-myoblast markers of fibrotic disease, including a- SMA and fibronectin, using a GAPDH as a loading control reference.
• fibroblast-to-myoblast markers of fibrotic disease including a- SMA and fibronectin
• GAPDH GAPDH
• Normal human Kidney Proximal tubular cells HK-2
• ATCC Ad human Kidney Proximal tubular cells
• the cultured cells are treated with either mIgG2b (10 mg/ml), TGF-b1 (1 ng/ml) or IMT001 (10 mg/ml) and are evaluated by Western blotting.
• Example 22 Treatment of patient with fibrotic disease
• a patient exhibiting jaundice and fluid retention visits a physician.
• the physician diagnoses the patient with liver fibrosis and prescribes a therapy comprising an anti- Gal3 antibody.
• the therapy is administered to the patient orally daily for a month at approximately 10mg/kg of patient's body weight.
• the anti-Gal3 antibody also has Gal3-TIM-3 blocking properties.
• Example 23 Induction of immune system activation in human subjects using an anti-Gal3 antibody.
• Human subjects or patients are optionally selected according to criteria such as immune system irregularity, autoimmune disease, immunodeficiency, immunosuppression, cancer or fibrosis.
• An anti-Gal3 antibody is administered systemically through parenteral, intravenous, intramuscular, intra-arteriole, intradermal, subcutaneous, intraperitoneal, intraventricular, or intracranial routes. Subjects are monitored for effect on immune system irregularity, autoimmune disease, immunodeficiency, immunosuppression, cancer or fibrosis.
• Subjects are also monitored by measuring blood, plasma or serum levels of cytokines such as IFNy, TGF-b, TGF-b1, IL-1b, IL-2, TNF-a, or GM-CSF using methods known in the art, e.g. gas chromatography, liquid chromatography, mass spectrometry, or enzyme-linked immunosorbent assay (EFISA).
• cytokines such as IFNy, TGF-b, TGF-b1, IL-1b, IL-2, TNF-a, or GM-CSF.
• white blood cells or TIM-3 -enriched white blood cells are isolated from a subject using techniques known in the art, such as centrifugation and fluorescence-activated cell sorting. Isolated white blood cells or TIM-3 -enriched white blood cells are contacted with an anti-Gal3 antibody to effect production of at least one cytokine and induce immune activation. Contacted white blood cells or TIM-3-enriched white blood cells can be autologously returned to the subject to treat an immune related disease such as a cancer or a fibrosis.
• an immune related disease such as a cancer or a fibrosis.
• Effects of the treatment can be seen within 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24 hours or 1, 2, 3, 4, 5, 6, 7 days, or 1, 2, 3, 4 weeks, or 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12 months, or 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 years.
• the administration of the anti-Gal3 antibody to the subject or contacting white blood cells or TIM-3-enriched white blood cells with the anti-Gal3 antibody can reduce an interaction between Gal3 and TIM-3 to less than 99%, less than 95%, less than 90%, less than 80%, less than 78%, less than 70%, less than 66%, less than 60%, less than 56%, less than 52%, less than 50%, less than 40%, less than 30%, less than 29%, less than 27%, less than 20%, less than 19%, less than 17%, less than 10%, less than 5%, less than 4%, less than 3%, less than 2%, or less than 1% of normal.
• the anti-Gal3 antibody may be produced and prepared under sterile conditions and under regulated or controlled procedures. In this process, the anti-Gal3 antibody is used in the manufacture of a medicament or composition. The prepared anti-Gal3 antibody is used in the treatment of an immune related disease such as cancer or fibrosis.
• Methods for maintaining and ensuring sterility may adhere to good manufacturing practice (GMP), good tissue practice (GTP), good laboratory practice (GLP), and good distribution practice (GDP) standards.
• Methods for maintaining and ensuring sterility include but are not limited to high-efficiency particulate air (HEPA) filtration, wet or dry heat, radiation, e.g., X-rays, gamma rays, or UV light, sterilizing agents or fumigants, such as ethylene oxide, nitrogen dioxide, ozone, glutaraldehyde, formaldehyde, peracetic acid, chlorine dioxide, or hydrogen peroxide, aseptic filling of sterile containers, packaging in plastic film or wrap, or vacuum sealing.
• HEPA high-efficiency particulate air
• radiation e.g., X-rays, gamma rays, or UV light
• sterilizing agents or fumigants such as ethylene oxide, nitrogen dioxide, ozone, glutaraldehyde, formaldehyde, per
• mice were inoculated at 7 day intervals with 50 ug of GAL3 protein fused to a linker-spaced 6- histidine tag, GAL3-ECD-His, (Aero GA3-H5129; Lot# 819-43PS1-5E.) in combination with a TLR agonist adjuvant mix (50mg MPL, 20mg CpG, 10mg Poly(EC) and 10mg R848) for 3 repetitions, followed by an inoculation with 50 ug of GAL3-His alone administered subcutaneously to the inguinal, back of the neck and base of the tail sites as well as hock and intraperitoneal sites.
• TLR agonist adjuvant mix 50mg MPL, 20mg CpG, 10mg Poly(EC) and 10mg R848
• lymph nodes axillary accessory axillary, mediastinal, superficial inguinal, iliac, sacral and popliteal
• LN immunized lymph node
• spleen and bone marrow cells were obtained using 2 sterile frosted glass slides in a tissue culture petri dish with 15mL DMEM. Bone marrow was extracted from femurs via end-cap flushing with a 5 mL syringe fitted with an 18-gauge needle.
• Cells from 3 animals were pelleted with 5 minutes of centrifugation at 1200 RPM, resuspended in 10 mL of DMEM (GIBCO 10564-011) and nucleated cells were enumerated by hemoeytometer count. Cells were pelleted at 1200 RPM and were resuspended in SC-Buffer (PBS, 2%FBS and ImM EDTA), and plasma cells were isolated with an EasySepTM Mouse CD138 Positive Selection Kit (StemCell Technologies) with the manufacturer recommended protocol.
• DMEM fetal bovine serum
• CD 138- positive cells were pelleted with 5 minutes of centrifugation at 1200 RPM, resuspended in 50 mL electrofusion buffer (Eppendorf 940-00-220-6) and were enumerated.
• SP2/0- mIL6 myeloma cells ATCC CRL2016
• Myeloma cells and CD 138-positive plasma cells were combined at a 1:1 ratio, volume was expanded to 50 mL with electrofusion buffer, cells were pelleted with 5 minutes of centrifugation at 1200 RPM and supernatant was discarded.
• cells were resuspended in electrofusion buffer to a concentration of 10x10 ⁇ 6 cells/ml, up to 9 mL of cell suspension was added to a BTX electrofusion chamber, and cells were fused with an 800V electrofusion protocol.
• Fused cells were rested for 5 minutes, transferred to a tissue culture dish containing 40 mL medium MM (DMEM, 15% FBS, 1% glutamax and 1% Pen/Strep), incubated for 1 hour at 37C, 8% C02, resuspended with a pipette, pelleted with 5 minutes of centrifugation at 1200 RPM, resuspended in ClonaCeil HY Liquid HAT Selection Medium (StemCell Technologies), and plated in 96-well tissue culture flat bottomed plates. After 10 days, supernatants were sampled and evaluated for binding to isolated GAL3 by ELISA.
• DMEM 15% FBS, 1% glutamax and 1% Pen/Strep
• GAL3-binding antibodies were evaluated for their binding affinity by SPR. Kinetics experiments were performed on BiacoreT200 at 25°C in high performance mode. Ligand proteins, purified antibodies were captured onto a CM5 chip coupled with anti-human Fc or anti-mouse Fc antibody, three antibodies at a time onto flow cell #2, 3, and 4, respectively, while flow cell #1 was used as reference. The analyte Galectin-3 in HBS-EP buffer was injected over all four flow cells at concentrations of 100, 50, 25, 12.5, 6.25, 3.125 and 0 nM at a flow rate of 30 mL/mi n. The complex was allowed to associate and dissociate for 240 and 300 seconds, respectively.
• the surfaces were regenerated with a 30 second injection of 10 mM Glycine pH 1.7 (flow rate 30 mL/min).
• the data were fit to a simple 1:1 interaction model using the global data analysis option available within BiacoreT200 Evaluation software V2.0.
• the affinity of Gal3 monoclonal antibodies was confirmed to be greater than 30 nM for all antibodies studied (Table 24.1). Antibodies with affinity less than 2E-7 were selected for further characterization.
• PBST PBS with 0.05% Tween 20 [VWR, 0777]
• the plate was then blocked for an hour with 2% BSA (EMD Millipore, 126609) in PBST at room temperature with gentle rocking. Thereafter, the 2% BSA in PBST was discarded and antibody or inhibitor (3-fold dilutions beginning at 20 mg/ml, 60 mg/ml, or 180 pM) in 2% BSA in PBST was added to the wells.
• TIM3 (Aero Biosystems, TM3-H5229) in 2% BSA in PBST was added to the antibody or inhibitor in the wells in a 1: 1 ratio.
• the plate was incubated for an hour at room temperature with gentle rocking. Thereafter, the plate was washed three times with PBST, and 0.3 mg/ml of human TIM3 Biotinylated Antibody (R&D Systems, BAF2365) in 2% BSA in PBST was added to the wells. The plate was incubated for an hour with gentle rocking and then washed three times with PBST. Avidin-HRP (1:2000) was then added to the wells.
• the plate was incubated at room temperature for an hour with gentle rocking and then washed three times with PBST.
• TMB substrate (Thermo Scientific, 34029) was then added to each well.
• the reaction was stopped with 1M HC1 (JT Baker, 5620-02) and read using a plate reader (Molecular Devices) at absorbance of 450 nm.
• GAL3-binding antibodies exhibited variable ability to block the associate of GAL3 and TIM3. Some antibodies were able to block the assembly of GAL3 and TIM3 to less than 5% of levels observed in the absence of a GAL3-targeted antibody, including 846.2H3. Other GAL3 -binding antibodies blocked the assembly of GAL3 and TIM3 to 5-20% of levels observed in the absence of a GAL3-targeted antibody, including mIMT001, 846.1F5, 2D10.2B2, 6H6.2D6, 20H5.A3, and 846T.1H2.
• GAL3-binding antibodies blocked the assembly of GAL3 and TIM3 to 20-50% of levels observed in the absence of a GAL3-targted antibody, including 19B5.2E6, 13H12.2F8, and 23H9.2E4.
• Other GAL3-binding antibodies blocked the assembly of GAL3 and TIM3 to 50-75% of levels observed in the absence of a GAL3-targeted antibody, including 15G7.2A7, 4G2.2G6, 4A11.2B5, 14H10.2C9, 20D11.2C6, 19D9.2E5, 13A12.2E5, and 3B 11.2G2.
• GAL3-binding antibodies showed minimal blocking activity towards the assembly of GAL3 and TIM3, reducing binding by 25% or less of TIM3 and GAL3 in the absence of a GAL3-targeted antibody, including 12G5.D7, 7D8.2D8, 9H2.2H1, 13G4.2F8, and 24D12.2H9.
• Example 25 Gal3 -targeted antibodies with and without Gal3-TIM3 blocking activity bind to distinct epitopes of Gal3
• At least 2 mg/ml of hGal3 peptide in 50 ml of PBS or 0.1 mg/ml of full-length human Gal3 protein (GenScript) and human Galectin-3 protein (Aero Biosystems, GA3- H5129) were diluted in PBS (Coming, 21-030-CM) to concentrations of at least 2 mg/ml or 0.1 mg/ml, respectively, and added to the wells of a 96-well ELISA plate (Thermo Fisher, 44-2404- 21). After incubating the plate at 4°C overnight, the plate was washed three times with PBST (PBS with 0.05% Tween 20 [VWR, 0777]).
• the plate was then blocked for an hour with 2% BSA (EMD Millipore, 126609) in PBST at room temperature with gentle rocking. Thereafter, the 2% BSA in PBST was discarded and human Galectin-3 hybridoma supernatants or antibodies were diluted in 2% BSA in PBST to concentrations of at least 0.1 mg/ml and added to the wells.
• the plate was incubated for an hour at room temperature with gentle rocking and then washed three times with PBST.
• Goat Anti-Mouse IgG-HRP Jackson ImmunoResearch,115-036-1461
• Goat Anti-Rat IgG HRP diluted in 2% BSA in PBST (1:4000) were added to the wells.
• the plate was incubated for 30 minutes to 1 hour at room temperature with gentle rocking and then washed three times with PBST.
• TMB substrate Thermo Scientific, 34029
• the reaction was stopped with 1M HC1 (JT Baker, 5620-02) and read using a plate reader (Molecular Devices) at absorbance of 450 nm.
• Gal3 -binding antibodies with Gal3- TIM3 blocking activity (6H6.2D6, 20H5.A3, 20D11.2C6, 19B5.2E6, 15G7.2A7, 23H9.2E4) all bound peptide 1 of Gal3, corresponding to amino acids 1-20 of Gal3, ADNFSLHDALSGSGNPNPQG (SEQ ID NO: 3).
• Gal3-targeted antibodies with poor Gal3-TIM3 blocking activity were observed to bind peptide 1.
• binding to Gal3 peptide 1 is predictive of the ability to block the interaction of Gal3 with TIM3.
• Gal3-binding antibodies with Gal3-TIM3 blocking activity (4G2.2G6, 3B 11.2G2, and 13A12.2E5) bound peptide 4 of Gal3, corresponding to amino acids 31-50 of Gal3, GAGGYPGASYPGAYPGQAPP (SEQ ID NO: 6).
• Gal3 -targeted antibodies with poor Gal3-TIM3 blocking activity were observed to bind peptide 4.
• binding to Gal3 peptide 4 is predictive of the ability to block the interaction of Gal3 with TIM3.
• Gal3- binding antibodies with Gal3-TIM3 blocking activity (mIMT00l, 846T.1H2, 13H12.2F8, 19D9.2E5, 14H10.2C9, 2D10.2B2, 4A11.2B5, 846.2H3, 846.1F5, 3B 11.2D2, and 13A12.2E5) all bound peptide 6 of Gal3, corresponding to amino acids 51-70 of Gal3, GAYPGQAPPGAYPGAPGAYP (SEQ ID NO: 8).
• no Gal3-targeted antibodies with poor Gal3-TIM3 blocking activity were observed to bind peptide 6.
• Gal3 -binding antibodies with Gal3-TIM3 blocking activity (6H6.2D6, 20H5.A3, 20D11.2C6, 13H12.2F8, 19B5.2E6, 23H9.2E4, 15G7.2A7, 19D9.2E5, 14H10.2C9, 7D8.2D8, 15F10.2D6 and 846.14A2) all bound peptide 7 of Gal3, corresponding to amino acids 61-80 of Gal3, AYPGAPGAYPGAPAPGVYPG (SEQ ID NO: 9).
• no Gal3 -targeted antibodies with poor Gal3-TIM3 blocking activity were observed to bind peptide 7.
• these data indicate that binding to Gal3 peptide 7 is predictive of the ability to block the interaction of Gal3 with TIM3.
• these data indicate the binding of anti-Gal3 antibodies to Gal3 peptides 1, 4, 5, 6, and 7 as predictive of the ability to block the interaction of Gal3 and TIM3.
• peptides 4, 5, 6, and 7 share repeated amino acid sequences comprised of proline-glycine (PG) and tyrosine-proline-glycine (YPG), indicating a common feature that may explain the ability of Gal3 -targeted antibodies to bind to multiple Gal3 peptides.
• PG proline-glycine
• YPG tyrosine-proline-glycine
• GxYPG amino acid sequence glycine-x-tyrosine-proline-glycine
• x may be the amino acids alanine (A), glycine (G), or valine (V)
• the presence of two GxYPG sequences in close apposition is likely predictive of the ability to bind Gal3 -targeted antibodies with the ability to block Gal3 and TIM3.
• the Grantham distance of alanine, glycine, and valine is Ala-Val: 64, Ala-Gly: 60, Val-Gly: 109, thereby predicting that amino acids with similarly low Grantham distances may similarly be able to substitute at the variable region, including proline and threonine.
• Gal3-binding antibodies with Gal3-TIM3 blocking activity bind to the same or overlapping regions of the Gal3 molecule
• antibody binning assays were performed to assess the ability of antibodies to simultaneously bind Gal3.
• Amine- reactive probes were loaded onto a Gator biosensor (Probe Life, Palo Alto, CA), equilibrated in dH20 for 60 seconds, dipped into 100 ml EDC 0.2M /NHS 0.05M activation buffer for 30 seconds, then dipped into a solution of 20 mg/ml human Gal3-His in 10 mM NaOAc buffer, pH 5 until binding was saturated, and quenched in 1 M ethanolamine pH 8.5 for 300 seconds.
• Example 27 Humanized GAL3-TIM3 blocking antibodies block GAL3-TIM3 binding.
• Example 28 GAL3-TIM3 blocking antibodies exhibit combination anti-tumor activity with anti-PDl or anri-PD-Ll antibodies.
• mice bearing MBT-2 bladder tumor xenografts in combination with other antibodies targeting the immunomodulatory checkpoint molecules PD- 1 and PD-LE were anesthetized by inhalation anesthetic (3 to 5 % Isoflurane in medical grade air) and 1 x 10 6 MBT-2 cells (Sekisui XenoTech, LLC) in 0.1 mL PBS were subcutaneously injected into the right flank by using a syringe with a 25-ga needle.
• isotype control mIgG2b BioXCell
• anti-Gal3 mIMT001
• anti-PDl RMP1-14, BioXCell
• anti-PDl RMP1-14
• mIMT001 anti-PDLl (10F.9G2, BioXCell) plus mIgG2b
• anti-PDLl (10F.9G2) plus mIMT001 anti-PDLl (10F.9G2) plus
• Isotype control and anti-Gal3 antibodies were dosed at 20 mg/Kg on day 7, 9, 12, 14 and 16; anti-PDl (RMP1-14 10 mg/Kg) or anti- PDLl (10F.9G2, 5 mg/Kg) were dosed on day 8, 12, and 15.
• Tumor volumes and body weights were monitored twice per week. The animals were humanely sacrificed when tumor volumes or animal health reached IACUC-defined endpoints. Results were expressed as mean ⁇ SEM, with statistical analysis performed by two-way ANOVA.
• Example 29 GAL3-TIM3 blocking antibodies exhibit single-agent anti-tumor activity in HCC.
• HCC spontaneous hepatocellular carcinoma
• mice were treated human anti-mIgG4 isotype control (hIgG4, 10mg/kg) or human anti-Gal3 antibody (IMT001-4, 10mg/kg) twice a week by intraperitoneal injection for 4 weeks. All animal care and procedures were approved by the Immutics IACUC. [0377] As depicted in FIGs. 29A-B, whereas no tumors were observed in animals kept on a normal diet, STAM-CDAA animals treated with isotype control antibodies exhibited signs of multifocal tumor generation as evident by gross inspection, with severe (>5 tumors per liver) formation noted in 4/7 animals and moderate formation (3-5 tumors per liver) noted in 2/7 animals, whereas only 1/7 was noted to be grossly free of tumors.
• tumor formation was significantly diminished, with only 1/7 animals exhibiting severe tumor formation, representing a 75% reduction in severe tumor formation and 1/7 animals exhibiting moderate tumor formation, representing a 50% reduction in moderate tumor formation.
• IMT001-4 treated animals exhibited no gross signs of tumor formation in 5/7 animals, representing a 400% increase in apparently tumor- free animals.
• livers were fixed in 4% paraformaldehyde (Electron Microscopy Sciences, Cat #15710S) for 24 hours, transferred to 70% EtOH for 72 hours, and samples were subsequently embedded in paraffin.
• tissue sections revealed large multifocal regions of dysplastic hepatocytes surrounded by steatotic regions of fatty liver (FIG. 29C). Steatosis was expected as a consequence of the administered diet. Liver sections from IMT001-4 treated animals exhibited significantly fewer regions of dysplastic hepatocyte plaques, with rare representative regions depicted in FIG. 29C. It was noted that in addition to the increased rarity of tumor plaques, the size of tumor regions in IMT001-4 treated animals was also significantly smaller than in control-treated animals.
• AFP alpha- fetoprotein
• mice exhibited low levels of AFP in serum, however, AFP was significantly elevated in STAM-CDAA mice treated with isotype control, with 3/6 animals exhibiting >2000 ng AFP/mL and 6/6 animals exhibiting >1000 ng AFP/mL (FIG. 29D).
• IMT001-4 treated animals exhibited significantly reduced levels of AFP relative to isotype treated animals, with only 1/6 animals exhibiting >2000 ng AFP/mL, representing a 66% decrease and 2/6 animals exhibiting >1000 ng AFP/mL, also representing a 66% decrease.
• Example 30 IMT001 reduces steatosis, ballooning, and inflammation in methionine/choline deficient model of NASH fibrosis.
• mice methionine-choline deficient mice
• MCD methionine-choline deficient mice
• Group 1 and 2 were treated mouse anti-mIgG2aLala isotype control (mISO, 10mg/kg) or mouse anti- Gal3 antibody (mIMT001, 10mg/kg) twice a week of IP injection for 4 weeks, at which time animals were sacrificed and liver specimens were collected, fixed in 4% paraformaldehyde (Electron Microscopy Sciences, Cat #15710S) for 24 hours, transferred to 70% EtOH for 72 hours, and samples were subsequently embedded in paraffin.
• mISO mouse anti-mIgG2aLala isotype control
• mIMT001 mouse anti- Gal3 antibody
• MCD mice treated with isotype control antibody exhibited signs of liver injury typical for this model, including steatosis, evident by the large white areas present in hematoxylin and eosin (H&E) stained liver specimens, hepatocellular ballooning evident by vacuolated apoptotic cells, and the presence of infiltrating immune cells, evident as clusters of largely nuclear cells with little cytoplasm (FIG. 30A). Liver specimens from mlMTOOl- treated MCD mice exhibited significant reductions in each of these measures of injury.
• H&E hematoxylin and eosin
• tissue sections were evaluated for the deposition of fibrotic collagen deposits by picosirius red staining. Briefly, after deparaffinization, liver specimens from isotype control- or IMT001 -treated MCD mice were rehydrated in serial ethanol baths, sections were stained in 0.01% Fast green FCF Solution (Cat# 1.04022.0025 MilliporeSigma) in saturated picric aqueous solution for 15 minutes at room temperature, followed by lh incubation at room temperature in 0.04% Fast green FCF /0.1 % Sirius red in saturated picric aqueous solution, prior to their dehydration, clearing and mounting. Images were quantitated using ImageJ software (Rasband, W.S., ImageJ, U. S. National Institutes of Health, Bethesda, Maryland, USA, world wide web .imagej.nih.gov/ij/)
• liver sections of MCD mice treated with isotype control were significantly fibrosis evident in liver sections of MCD mice treated with isotype control, as indicated by the presence of abundant picosirius red-positive collagen networks in these specimens.
• liver sections of MCD mice treated with mIMT001 exhibited reduced levels of picosirius-red stained collagen deposits.
• Image-based quantification of picosirius red sections revealed that staining was reduced from 4.3% of the tissue area in specimens from isotype-control treated animals area to 1.25% of the area in mIMT001 -treated specimens, a 71% reduction (Fig. 30D).
• Example 31 IMT001-4 reduces liver fibrosis in CDAA-HFD STAM mice
• mice were treated human anti-mIgG4 isotype control (hIgG4, 10mg/kg) or human anti-Gal3 antibody (IMT001-4, 10mg/kg) twice a week by intraperitoneal injection for 4 weeks. All animal care and procedures were approved by the Immutics IACUC.
• STAM CDAA-HFD mice treated with isotype control antibody exhibited signs of liver injury typical of this model, as evidenced in picosrius-red stained liver sections, which exhibited significant steatosis and the presence of abundant fibrotic collagen deposits (FIG. 31A).
• Fiver specimens from IMT001-4 treated animals exhibited similar levels of steatosis compared to those control treated animals, but levels of picosirius red-positive fibrotic collagen deposits were substantially reduced.
• HuIgG4, HuIMT001-4 and HuIMT006-l were each administered by intraperitoneal route at 10 mg/kg Q2Dx3 whereas metformin (500 mg/kg/day) was administered to mice dissolved in drinking water.
• metformin 500 mg/kg/day
• therapeutic antibodies or metformin was administered 1 day before UUO
• therapeutic antibodies or metformin was administered 1 day after UUO.
• mice were sacrificed, left kidney was harvested and fixed with 4% paraformaldehyde for immunohistochemistry (IHC) and blood was collected in Heparin-EDTA tubes for blood biochemistry analysis.
• Levels of plasma mouse TIM- 1/KIM- 1/HAVCR were measured using a commercial ELISA kit (Catalog # MKMIOO; R&D Systems, Minneapolis, MN) according to the protocol provided by the manufacturer.
• Levels of plasma mouse Lipocalin-2/NGAL were measured using a commercial ELISA kit (Catalog # DY1857; R&D Systems, Minneapolis, MN) according to the protocol provided by the manufacturer. 5 um sections of fixed kidney specimens were produced and processed for picosirius red staining as described for liver specimens above.
• kidneys from animals treated as above were evaluated for fibrotic deposits by picosirius red staining.
• UUO animals treated with isotype antibody exhibited characteristic patterns of picosirius red staining (FIG. 32B).
• kidney specimens from UUO mice treated with IMT001-4, IMT001- 6, or metformin showed substantial reductions in picosirius red staining.
• kidney specimens were harvested and stained by IHC for Collagen lal (Collal), a marker of kidney fibrosis.
• Collagen lal Collagen lal
• FIG. 33A animals treated with mIMT001 exhibited reduced levels of Collal staining than did specimens from animals treated with isotype control.
• Image quantification revealed that Collal staining was significantly elevated in isotype-control treated UUO kidney specimens compared to sham control, enumerated at 5.48 intensity units in the former and 17.75 in the latter.
• kidney specimens from mIMT001 -treated animals were observed to be significantly reduced to 9.17 intensity units, representing a 48% overall reduction in this marker of fibrosis (FIG. 33B).
• GAL3-TIM3 blocking antibodies offer not only a preventative benefit, but also a therapeutic benefit in kidney fibrosis.
• Example 33 anti-Gal3 antibodies inhibit lung fibrosis in mouse bleomycin-induced injury model
• Fibrosis of the lung represents an additional significant form of fibrotic disease with significant health impacts in humans.
• a mouse bleomycin-induced lung fibrosis model was evaluated for sensitivity to mIMT001. Briefly, C57Blck/6 male mice were injected intra-tracheally with 30ug of Bleomycin Sulfate (MP biomedicals, cat# 190306) reconstituted in 50ul of PBS.
• mice were treated on day 18, 20, 22, and 24 with mIgG2b isotype control, anti-GAL3 antibody (mIMT001) (10mg/kg) by tail vein injection, or small molecule TD139 (Med Chem Express, cat# HY-19940) at lOuM in 50ul of Captisol (Med Chem Express, cat# HY-17031) injected intra-tracheally.
• Mice were sacrificed on day 27 and lungs were surgically dissected and fixed in 4% paraformaldehyde for 24 hours, exchanged into 70% ethanol, and embedded in paraffin. Lung fibrosis in fixed specimens was evaluated by Masson's trichrome staining kit (26367) from Electron Microscopy Sciences (Hatfield, PA).
• 5uM lung sections were affixed to glass slides, After deparaffinization, rehydration in serial ethanol baths. Staining was performed by incubating in Bouin's fixative for lh at 56 degree, staining with Briebrich Scarlet/acid fuchsin, Phosphomolybdic Acid-Phosphotungstic Acid and Aniline Blue, then differentiated in acetic acid, prior to their dehydration, clearing and mounting.
• CDR sequences for the anti-Gal3 disclosed herein were determined. CDRs were mapped using IMGT (world wide web.ebi.ac.uk/ipd/imgt/hla/align.html). Heavy chain CDR (VH) are provided in FIG. 35A, and light chain CDR (VL) are provided in FIG. 35B. Full VH sequences are provided in FIG. 36A, and Full VH sequences are provided in FIG. 36B. Sequences for constant regions are provided in FIG. 37.
• Bin 1 antibodies shared significant homology in VH CDR1 and CDR2, as well as in regions of VL CDR1 and CDR3.
• Bin 2 antibodies shared significant homology in all CDRs examined, with relatively conservative A/S, V/T, H/D, and L/F substitutions observed.
• Bin 3 antibodies were somewhat more diverse, with significant sequence homology in CDR1, but relatively divergent in other CDR regions.
• Bin 4 antibodies shared significant homology in all CDRs examined, with relatively conservative A/T, I/V, D/G, S/N, QK, and V/L substitutions observed.
• Bin 5 antibodies also shared significant homology in all CDRs, with relatively conservative Y/F, N/K, substitutions observed in addition to less conservative T/I, N/Y substitutions. Finally, bin 7 antibody CDRs were observed to be nearly identical, with a single V/L substitution in VL CDR2 distinguishing 3B 11.2G2 from 13A12.2E5. Alignments with any of the other sequences provided in FIGs. 35A-B, 36A-B, 37, or 38 can be done with techniques known in the art.

Landscapes

• Health & Medical Sciences (AREA)
• Chemical & Material Sciences (AREA)
• Life Sciences & Earth Sciences (AREA)
• Organic Chemistry (AREA)
• Medicinal Chemistry (AREA)
• General Health & Medical Sciences (AREA)
• Immunology (AREA)
• Engineering & Computer Science (AREA)
• Public Health (AREA)
• Veterinary Medicine (AREA)
• Pharmacology & Pharmacy (AREA)
• Animal Behavior & Ethology (AREA)
• Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
• General Chemical & Material Sciences (AREA)
• Chemical Kinetics & Catalysis (AREA)
• Bioinformatics & Cheminformatics (AREA)
• Genetics & Genomics (AREA)
• Biochemistry (AREA)
• Biomedical Technology (AREA)
• Molecular Biology (AREA)
• Proteomics, Peptides & Aminoacids (AREA)
• Biophysics (AREA)
• Microbiology (AREA)
• Wood Science & Technology (AREA)
• Biotechnology (AREA)
• Zoology (AREA)
• Oncology (AREA)
• Hematology (AREA)
• Epidemiology (AREA)
• Mycology (AREA)
• Endocrinology (AREA)
• Cell Biology (AREA)
• General Engineering & Computer Science (AREA)
• Gastroenterology & Hepatology (AREA)
• Urology & Nephrology (AREA)
• Medicines Containing Antibodies Or Antigens For Use As Internal Diagnostic Agents (AREA)
• Peptides Or Proteins (AREA)
• Micro-Organisms Or Cultivation Processes Thereof (AREA)
• Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)
• Steroid Compounds (AREA)

Priority Applications (12)

Applications Claiming Priority (4)

Related Child Applications (1)

Publications (2)

Family

ID=71842280

Family Applications (1)

Country Status (8)

Cited By (13)

Families Citing this family (6)

Family Cites Families (776)