JPH06509063A - 診断薬および分析方法における核酸類縁体の使用・用途 - Google Patents
診断薬および分析方法における核酸類縁体の使用・用途Info
- Publication number
- JPH06509063A JPH06509063A JP4510139A JP51013992A JPH06509063A JP H06509063 A JPH06509063 A JP H06509063A JP 4510139 A JP4510139 A JP 4510139A JP 51013992 A JP51013992 A JP 51013992A JP H06509063 A JPH06509063 A JP H06509063A
- Authority
- JP
- Japan
- Prior art keywords
- nucleic acid
- pna
- acid analog
- analog
- group
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Granted
Links
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- YLQBMQCUIZJEEH-UHFFFAOYSA-N tetrahydrofuran Natural products C=1C=COC=1 YLQBMQCUIZJEEH-UHFFFAOYSA-N 0.000 description 1
- 230000037426 transcriptional repression Effects 0.000 description 1
- 238000012546 transfer Methods 0.000 description 1
- 238000006276 transfer reaction Methods 0.000 description 1
- 230000009466 transformation Effects 0.000 description 1
- 230000001131 transforming effect Effects 0.000 description 1
- 230000005945 translocation Effects 0.000 description 1
- ITMCEJHCFYSIIV-UHFFFAOYSA-N triflic acid Chemical compound OS(=O)(=O)C(F)(F)F ITMCEJHCFYSIIV-UHFFFAOYSA-N 0.000 description 1
- LENZDBCJOHFCAS-UHFFFAOYSA-N tris Chemical compound OCC(N)(CO)CO LENZDBCJOHFCAS-UHFFFAOYSA-N 0.000 description 1
- 238000009281 ultraviolet germicidal irradiation Methods 0.000 description 1
- 238000001291 vacuum drying Methods 0.000 description 1
- 125000003774 valeryl group Chemical group O=C([*])C([H])([H])C([H])([H])C([H])([H])C([H])([H])[H] 0.000 description 1
- 239000002966 varnish Substances 0.000 description 1
- DGVVWUTYPXICAM-UHFFFAOYSA-N β‐Mercaptoethanol Chemical compound OCCS DGVVWUTYPXICAM-UHFFFAOYSA-N 0.000 description 1
Classifications
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H21/00—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
- A61P31/12—Antivirals
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P43/00—Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
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- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/001—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof by chemical synthesis
- C07K14/003—Peptide-nucleic acids (PNAs)
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K5/00—Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
- C07K5/04—Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
- C07K5/06—Dipeptides
- C07K5/06008—Dipeptides with the first amino acid being neutral
- C07K5/06017—Dipeptides with the first amino acid being neutral and aliphatic
- C07K5/06026—Dipeptides with the first amino acid being neutral and aliphatic the side chain containing 0 or 1 carbon atom, i.e. Gly or Ala
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K5/00—Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
- C07K5/04—Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
- C07K5/06—Dipeptides
- C07K5/06139—Dipeptides with the first amino acid being heterocyclic
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K7/00—Peptides having 5 to 20 amino acids in a fully defined sequence; Derivatives thereof
- C07K7/04—Linear peptides containing only normal peptide links
- C07K7/06—Linear peptides containing only normal peptide links having 5 to 11 amino acids
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K7/00—Peptides having 5 to 20 amino acids in a fully defined sequence; Derivatives thereof
- C07K7/04—Linear peptides containing only normal peptide links
- C07K7/08—Linear peptides containing only normal peptide links having 12 to 20 amino acids
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
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- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
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- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6832—Enhancement of hybridisation reaction
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- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
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- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K38/00—Medicinal preparations containing peptides
Landscapes
- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Biochemistry (AREA)
- General Health & Medical Sciences (AREA)
- Molecular Biology (AREA)
- Genetics & Genomics (AREA)
- Engineering & Computer Science (AREA)
- Biophysics (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Medicinal Chemistry (AREA)
- Biotechnology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Immunology (AREA)
- General Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Analytical Chemistry (AREA)
- Physics & Mathematics (AREA)
- Chemical Kinetics & Catalysis (AREA)
- General Chemical & Material Sciences (AREA)
- Veterinary Medicine (AREA)
- Animal Behavior & Ethology (AREA)
- Pharmacology & Pharmacy (AREA)
- Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
- Gastroenterology & Hepatology (AREA)
- Public Health (AREA)
- Virology (AREA)
- Communicable Diseases (AREA)
- Oncology (AREA)
- Peptides Or Proteins (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Saccharide Compounds (AREA)
- Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
- Investigating Or Analysing Biological Materials (AREA)
- Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)
- Polyamides (AREA)
- Medicines Containing Material From Animals Or Micro-Organisms (AREA)
Abstract
Description
Claims (1)
- 【特許請求の範囲】 1.一つまたはそれ以上の化学的または微生物的個体単位についてその捕捉、認 識、検出、同定または定量化を行うために使用する核酸類縁体であって、かかる 類縁体が以下であるもの:即ち、(a)主鎖に沿ったそれぞれ空間を置いた異な る位置において複数のリガンドを有するポリアミド主鎖から構成されるペプチド 核酸(PNA)において、前記リガンドがそれぞれ独立して天然の核酸塩基、非 天然の核酸塩基または核酸塩基結合基であり、前記リガンドは各々前記主鎖の窒 素原子に直接または間接に結合せしめられ、かつ前記リガンドが4つから8つま での介在する原子によって前記主鎖のなかで相互に分離された窒素原子を有する ものである、前記ペプチド核酸(PNA)、 (b)核酸類縁体であって、相補的配列の核酸とハイブリッド形成して、前記類 縁体に相当する従来公知のデオキシリボヌクレオチドと前記核酸との間で形成さ れたハイブリッドよりも熱による変性に対する安定性がより高いハイブリッドを 形成する能力を有する前記核酸類縁体;または (c)核酸類縁体であって、一本鎖が前記縁体に相補的である配列を有する二重 鎖核酸とハイブリッド形成して、かくして前記一本鎖からもう一方の鎖を置換せ しめる能力を有する前記核酸類縁体。 2.以下の一般式を有する、請求の範囲第1項において請求された核酸類縁体: ▲数式、化学式、表等があります▼ 但し上式において: nは、少なくとも2である、 L1−Lnのそれぞれは独立して、水素、ヒドロキシ、(C1−C4)アルカノ イル、天然の核酸塩基類、非天然の核酸塩基類、芳香族原子部、DNA挿入基、 核酸塩基結合基およびリポータリガンドから構成される群から選択されるが、L 1−Lnの内の少なくとも一つは、天然の核酸塩基、非天然の核酸塩基、DNA 挿入基または核酸塩基結合基である; A1−Anのそれぞれは、一重結合、メチレン基または式(IIa)または式で 表される基である: ▲数式、化学式、表等があります▼または▲数式、化学式、表等があります▼但 し上式において: Xは、O、S、Se、NR3、CH2またはC(CH3)2である;Yは、一重 結合、O、SまたはNR4である; pおよびqのそれぞれは、1から5までの 整数であり、p+qの和は、10以下である; rおよびsのそれぞれは、ゼロまたは1から5までの整数であり、r+sの和は 、10以下である; R1およびR2はそれぞれ独立して、水素、ヒドロキシもしくはアルコキシもし くはアルキルチオで置換されていてもよい(C1−C4)アルキル、ヒドロキシ 、アルコキシ、アルキルチオ、アミノおよびハロゲンから構成される群から選択 される;またR3およびR4のそれぞれは独立して、水素、(C1−C4)アル キル、ヒドロキシもしくはアルコキシもしくはアルキルチオで置換された(C1 −C4)アルキル、ヒドロキシ、アルコキシ、アルキルチオおよびアミノから構 成される群から選択される;B1−Bnのそれぞれは、NまたはR3N+であり 、ここにおいてR3は上記において定義された通りである; C1−Cnのそれぞれは、CR6R7、CHR6CHR7またはCR6R7CH 2であり、ここにおいてR5は水素でありまたR7は、天然のアルファアミノ酸 の側鎖から構成される群から選択され、またはR6およびR7は独立して、水素 、(C2−C6)アルキル、アリール、アラルキル、ヘテロアリール、ヒドロキ シ、(C1−C6)アルコキシ、(C1−C6)アルキルチオ、NR3R4およ びSR5から構成される群から選択されるが、ここにおいてR3およびR4は、 上記において定義された通りであり、R5は水素、(C1−C6)アルキル、ヒ ドロキシ、アルコキシもしくはアルキルチオで置換された(C1−C6)アルキ ルであり、またはR6およびR7とは一緒になって、脂環系または異項環系を形 成する; D1−Dnのそれぞれは、CR6R7、CH2R6CHR7またはCHR6CH R7であり、ここにおいてR6およびR7は、上記において定義された通りであ る; G1−Gn−1はそれぞれ、いずれかの方向での−CONR3−、CSNR3− 、−SONR3−または−SO2NR3−でって、なおここにおいてR3は、上 記において定義した通りである;Qは、−CO2H、−CONR′R′′、−S O2Hもしくは−SO2NR7R′′または−CO2Hもしくは−SO3Hの活 性化誘導体である;また1は、−NHR′′′R′′′′−または−NR′′′ C(O)R′′′′であり、ここにおいてR′、R′′、R′′′およびR′′ ′′は独立して、水素、アルキル、アミノ保護基、リポータリガンド、挿入基、 キレート化剤、ペプチド、タンパク質、炭水化物、脂質、ステロイド、オリゴヌ クレオチドならびに可溶および不溶のポリマーである。 3.以下の一般式を有する、請求の範囲第2項において請求されたペプチド核酸 : ▲数式、化学式、表等があります▼ なお本式において: Lはそれぞれ独立して、水素、フェニル、例えば一つ、二つまたは三つのリング の異項環、天然の核酸塩基および非天然の核酸塩基から成る群から選択される; Rrはそれぞれ独立して、水素および天然のアルファアミノ酸の側鎖から成る群 から選択される; nは、1から60までの整数である; k、1およびmのそれぞれは独立して、ゼロまたは1から5までの整数である; 好ましくは、kとmとの和は1または2であり、最も好ましくは1である; Rnは、OH、NH2または−NHLysNH2である;およびR1はHまたは COCH3である。 4.以下の一般式を有する、請求の範囲第3項において請求された核酸類縁体: ▲数式、化学式、表等があります▼なお本式において:Lはそれぞれ独立して、 核酸塩基であるチミン、アデニン、シトシン、グアニンおよびウラシルから成る 群から選択される;Rrはそれぞれ、水素である;および nは、1から30までの整数である。 5、検出可能な標識を導入したまたは検出可能な標識に接合された、請求の範囲 第1項から第4項までの内の何れか一項において請求された核酸類縁体。 6.前記標識が、放射性同位元素標識、酵素標識、ビオチン、発蛍光団、化学発 光標識、抗原、抗体またはスピン標識である、請求の範囲第5項において請求さ れた標識された核酸類縁体。 7.一つまたはそれ以上の化学的または微生物的個体単位についてその捕捉、認 識、検出、同定または定量化を行うために、請求の範囲第1項から第6項までの 内の何れか一項において定義された核酸類縁体を使用すること。 8.核酸を捕捉するに際して、固体支持体に固定化した、請求の範囲第1項から 第6項までの内の何れか一項において請求された核酸類縁体にハイブリッド形成 条件下において前記核酸を接触させることから成る、核酸を捕捉する方法。 9.捕捉された前記核酸が、前記固定化された核酸類縁体に結合された状態にあ る核酸認識薬剤で処理することによって検出され、認識され、定量化されまたは 同定される、請求の範囲第8項において請求された方法。 10.捕捉された該核酸が、前記固定化された核酸類縁体にハイブリッドされた 第一の領域およびそのようにハイブリッドされて以いない第二の領域であって、 該第二の領域の少なくとも一部にハイブリッドする様に適合せしめられている標 識核酸または核酸類縁体で処理された第二の領域を有しており、かつ前記標識が 検出される、請求の範囲第9項において請求された方法。 11.前記固定化された核酸類縁体が、加水分解してmRNAのポリA尾部を生 じ、その結果前記mRNAを捕捉することが可能である逐次リガンドから成る、 請求の範囲第9項において請求された、mRNAを捕捉する方法。 12.zenki逐次リガンドがチミンである、請求の範囲第11項において請 求された方法。 13.−旦捕捉された前記核酸か、前記固定化された核酸類縁体と捕捉された核 酸とを脱ハイブリッド化する条件に供することによって該固定化核酸類縁体から 開放・放出される、請求の範囲第8項、11項また第12項の内の何れか一項に おいて請求された方法。 14.固体支持体に固定化された、請求の範囲第1項から第6項までの内の何れ か一項において請求された核酸類縁体。 15.アフィニティ捕捉カラムに導入された、請求の範囲第14項において請求 された固定化された核酸類縁体。 16.ハイブリッド化する条件下においてハイブリッドするに充分に相補的な配 列を有する、請求の範囲第5項または第6項で請求された標識した核酸類縁体に 標的をハイブリッドさせ、かつ前記標的にハイブリッドさせた該核酸類縁体の前 記標識を検出するかまたは定量化することから成る、標的核酸を認識、検出また は定量化する方法。 17.前記標的核酸が前記ハイブリダイゼーションに先だって支持体に固定化さ れる、請求の範囲第16項において請求された方法。 18.前記標的核酸が、前記支持体に固定化されるに際して、その第一の領域を 、捕捉された核酸または核酸類縁体であって、ハイブリッドするに充分に前記第 一の領域に相補的である配列を有しかつそれ自体が前記支持体に固定化されてい る該捕捉核酸または核酸類縁体にハイブリダイゼーションさせ、かつ前記標識さ れた核酸類縁体が前記標的の第二の領域にハイブリッドする、請求の範囲第17 項において請求された方法。 19.核酸二重らせんから一本鎖を置換する方法において、前記二重らせんに対 して、前記核酸のもう一方の鎖に対するアフィニティーが前記一本鎖を置換する ことが可能である程に充分であるような核酸類類縁体をハイブリッドさせること から成る前記置換方法。 20.二本鎖標的核酸を検出し、同定しまたは定量化する方法において、置換さ れない鎖が置換核酸類縁体に相補的な配列を有する二本鎖標的から一本鎖を置換 することができる置換核酸類縁体を該標的核酸にハイブリッドさせるに際して、 前記置換核酸類縁体の配列が、自らにハイブリッドするに充分に相補的あって、 その結果、一本鎖の形態において前記標的の一本鎖を置換するものであって、か つその後に前記置換された一本鎖を存在を検出するかまたは定量化することから 成る、前記検出、同定または定量化する方法。 21.置換された鎖をフラグメントに切断しかつ前記フラグメントの存在を検出 する、請求の範囲第20項において請求された方法。 22.前記置換された鎖がヌクレアーゼの攻撃によって切断される、請求の範囲 第21項において請求された方法。 23.請求の範囲5項または第6項ににおいて請求された少なくとも一つの標識 された核酸類縁体および前記標識された核酸類縁体を検出する少なくとも一つの 検出試薬とから構成される、診断方法において使用されるキット。 24.請求の範囲第1項から第4項までの内の何れか一項において請求された核 酸類縁体を更に固体支持体に固定化されて成る、請求の範囲第23項において請 求されたキット。 25.請求の範囲第1項から第4項までの内の何れか一項において請求された固 定化された核酸類縁体と、前記核酸類縁体によって捕捉された核酸の存在を検出 する少なくとも一つの核酸認識薬剤とを組合せて成るキット。 26.前記核酸認識薬剤が、標識された核酸または標識された核酸類縁体である 、請求の範囲第25項において請求されたキット。
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DK98691A DK98691D0 (da) | 1991-05-24 | 1991-05-24 | Oligonucleotid-analoge betegnet pna, monomere synthoner og fremgangsmaade til fremstilling deraf samt anvendelser deraf |
DK0986/91 | 1991-05-24 | ||
DK0987/91 | 1991-05-24 | ||
DK98791A DK98791D0 (da) | 1991-05-24 | 1991-05-24 | Fremgangsmaade til sekvensspecifik genkendelse af et dobbeltstrenget polynucleotid |
DK0510/92 | 1992-04-15 | ||
DK92510A DK51092D0 (da) | 1991-05-24 | 1992-04-15 | Oligonucleotid-analoge betegnet pna, monomere synthoner og fremgangsmaade til fremstilling deraf samt anvendelser deraf |
PCT/EP1992/001220 WO1992020703A1 (en) | 1991-05-24 | 1992-05-22 | The use of nucleic acid analogues in diagnostics and analytical procedures |
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JP2007147536A Division JP2007306926A (ja) | 1991-05-24 | 2007-06-01 | 核酸類縁体並びに診断薬および分析方法におけるその使用方法 |
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EP (5) | EP0586474B1 (ja) |
JP (6) | JP2758988B2 (ja) |
KR (1) | KR0133131B1 (ja) |
AT (3) | ATE155483T1 (ja) |
AU (2) | AU666480B2 (ja) |
BR (1) | BR9206049A (ja) |
CA (2) | CA2109805A1 (ja) |
DE (2) | DE69232055T2 (ja) |
DK (3) | DK51092D0 (ja) |
ES (2) | ES2107552T3 (ja) |
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Cited By (2)
Publication number | Priority date | Publication date | Assignee | Title |
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WO1999002730A1 (fr) * | 1997-07-09 | 1999-01-21 | Dai Nippon Printing Co., Ltd. | Procede de detection d'adn au moyen d'une sonde de pna |
JP2004502649A (ja) * | 2000-04-18 | 2004-01-29 | アベンティス・ファーマ・ドイチユラント・ゲゼルシャフト・ミット・ベシュレンクテル・ハフツング | 負電荷を有するペプチド核酸誘導体、薬剤ならびにその製造方法 |
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