JP2018522822A - 共通ネオ抗原 - Google Patents
共通ネオ抗原 Download PDFInfo
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- JP2018522822A JP2018522822A JP2017560196A JP2017560196A JP2018522822A JP 2018522822 A JP2018522822 A JP 2018522822A JP 2017560196 A JP2017560196 A JP 2017560196A JP 2017560196 A JP2017560196 A JP 2017560196A JP 2018522822 A JP2018522822 A JP 2018522822A
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Abstract
Description
本出願は、2015年5月20日に出願された米国仮出願第62/179,877号明細書及び2016年2月23日に出願された米国仮出願第62/389,377号明細書の優先権及び利益を主張する。
(a)上記組成物は、癌に罹患している対象の集団中の対象の少なくとも1%の腫瘍中に存在する腫瘍特異的突然変異を含む少なくとも1つのネオ抗原ペプチドを含む、
(b)上記組成物は、癌に罹患している対象の集団中の対象の少なくとも5%に存在するHLAタンパク質に結合する腫瘍特異的ネオエピトープを含む少なくとも1つのネオ抗原ペプチドを含む、又は
(c)上記組成物は、癌に罹患している対象の集団中の対象の少なくとも5%に存在する腫瘍に対して免疫応答を誘発することができる少なくとも1つのネオ抗原ペプチドを含む、
医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、SF3B1:p.K700E,MYD88:p.L273P,NOTCH1:p.P2514fs,ABCA11P:p.E901D,AHNAK:p.D3823E,ZNF814:p.E348D,AHNAK:p.V1220I,AHNAK:p.H1203N,ANKRD30A:p.A232V,APOOL:p.I138L,EGR2:p.H397N,MKI67:p.H2213D,NRAS:p.Q61R,PLIN4:p.M691V,XPO1:p.E571K,ZCRB1:p.L76F,ZNF700:p.N652H,ZNF700:p.Q654R,ZNF844:p.D458H,AHNAK:p.A4046V,ANKRD36:p.P337R,C1orf170:p.T203I,CAST:p.D639E,EGR2:p.E369K,GPR123:p.L630P,IKZF3:p.L162R,MUC4:p.P4224R,OR9Q1:p.M34L,PKD2:p.Y486F,PRAMEF11:p.R104Q,SYNJ1:p.I681F,TP53:p.R248Q,TP53:p.R248W,TRPV2:p.L627del,ZNF254:p.S498A,ZNF732:p.A459T,ZNF749:p.E530Q,ZNF845:p.M423I,ABCA11P:p.G900E,ACRC:p.E243D,ACRC:p.A244V,ACSL3:p.T188S,ADAMTS2:p.D948N,AGAP6:p.S127I,AHNAK:p.A2114G,ANKRD36:p.D1014Y,ARID3A:p.G550fs,ARID4A:p.D1154E,ATP2B4:p.R183H,ATRNL1:p.L1244F,BNC1:p.Y937N,BRAF:p.K601N,BTLA:p.Q86K,C14orf177:p.G90V,C2orf44:p.N456K,C3orf15:p.R552Q,CACNA2D1:p.Y376N,CALD1:p.E340K,CCDC15:p.P488H,CCDC79:p.N440T,CCNB3:p.A932T,CD109:p.L470Q,CD209:p.Q189L,CKAP2:p.*684K,CMA1:p.I81K,CMIP:p.A230T,CNTNAP4:p.I12F,CRYM:p.*315K,DICER1:p.E1705K,DPCR1:p.L716P,EIF3A:p.M1093L,EIF4G3:p.R8H,ETFDH:p.I281F,EWSR1:p.Y656C,F5:p.L1332P,F5:p.L1253F,FAM50A:p.H317R,FBXL13:p.S102R,FBXW7:p.R465H,FHL1:p.D184E,FILIP1:p.I522K,FRG1B:p.Q39K,GNB1:p.I80T,GPR110:p.R443G,GPR98:p.Y6152F,HDGFL1:p.188_189insA,IGF2BP2:p.T186S,IL1R2:p.L364fs,KIAA1109:p.L4680P,KRAS:p.G13D,KRTAP19−1:p.G61S,MAF:p.G53fs,MAGEC1:p.L609H,MAP2K1:p.K57N,MED12:p.L36R,MED12:p.G44S,METAP2:p.Y137N,METTL9:p.Y57F,MGP:p.V15L,MKI67:p.R2222K,MUC16:p.T11005I,MUC4:p.S3941N,MUC4:p.S3941G,MUC4:p.V3091L,MUC4:p.S2951Y,MUC4:p.A2841S,MUC4:p.S2760A,MUC4:p.T2335M,MUC4:p.T1627K,MUC4:p.T1547S,MUC4:p.H1133Q,MYD88:p.M240T,NEDD4L:p.P194del,NEFH:p.S704T,NRG4:p.G21fs,OR2A25:p.S105C,OR4C16:p.Y63F,OR4N4:p.L150fs,PABPC1:p.K254fs,PIWIL1:p.P372fs,PLCD3:p.E499fs,PLEKHB1:p.S146P,PPIL4:p.S382R,PRDM4:p.*802K,PRG4:p.N675H,PRKAB1:p.P104H,R3HDM2:p.S592G,R3HDM2:p.S588N,R3HDM2:p.R206W,RPS2:p.R200G,RPTN:p.G364S,SF3B1:p.K666E,SF3B1:p.N626Y,SF3B1:p.Y623C,SIX3:p.I27L,SLC39A7:p.L456fs,SLC6A9:p.R94K,TFG:p.A382V,TGOLN2:p.K83R,TGOLN2:p.T80S,TLR2:p.D327V,TNKS2:p.T619fs,TP53:p.R273H,TP53:p.C242F,TP53:p.R175H,TWISTNB:p.H306Q,UBXN7:p.A276V,WDR78:p.N110K,XIRP2:p.V3008E,ZNF382:p.H186Q,ZNF578:p.R306H,ZNF578:p.G311S,ZNF578:p.H334R,ZNF700:p.S649C,ZNF705A:p.D298N,ZNF836:p.K608Q,及びZNF836:p.I571Nからなる群から選択される突然変異の任意の組み合わせを含み、並びに
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、PIK3CA:p.E545K,FGFR3:p.S249C,TP53:p.R248Q,PIK3CA:p.E542K,RXRA:p.S427F,ZNF814:p.D404E,FBXW7:p.R505G,NOTCH2:p.P6fs,TP53:p.E285K,ANKRD30A:p.A353P,C3orf70:p.S6L,EFCAB6:p.R379K,ERCC2:p.N238S,FAM47C:p.Q225E,FOXQ1:p.S135L,HLA−A:p.Q78R,MUC4:p.H4205Q,OTUD4:p.T909I,SLAMF1:p.S277fs,SPRED3:p.S128del,TMCO2:p.S15fs,TP53:p.R280T,TP53:p.E271K,TP53:p.A159V,ZNF706:p.I8N,ZNF706:p.R3P,ACACB:p.E2318Q,ACPP:p.E321K,ACRC:p.A264V,ADAMTS2:p.23_24insL,AFF3:p.E919K,AHNAK:p.S4150F,AHNAK:p.D2889H,AHNAK:p.V1940A,ALX4:p.R126Q,ANKRD12:p.E627K,ANKRD32:p.T999N,ARID1A:p.S614L,ASXL2:p.117_118SS>S,ATP12A:p.R858C,ATP9A:p.R519Q,BCAS3:p.T214M,BPI:p.M255I,CACNG8:p.V146G,CAMSAP1:p.T466fs,CDC27:p.I91fs,CDKN1A:p.E44fs,CEP192:p.S2058L,CGB8:p.T18A,CHRNA3:p.L23del,CHST4:p.D352N,CLIP1:p.S1018fs,COX6A1:p.S8L,CREBBP:p.D1435H,CRIPAK:p.M48fs,CSPG5:p.D119N,CUL1:p.E485K,DLC1:p.S741T,DLL3:p.D318H,DOPEY2:p.E1196K,ECM1:p.E266K,EEF1A2:p.Y418S,EEF2K:p.E673K,EMILIN1:p.R27G,ERBB2:p.S310F,ERBB3:p.M91I,ERBB3:p.V104L,ERBB3:p.D297Y,ERCC2:p.Y14C,FAM155A:p.Q86del,FAM43B:p.E272del,FASTKD3:p.Q625E,FBXW7:p.S546L,FGFR3:p.R248C,FGFR3:p.G380R,FGFRL1:p.H479fs,GBE1:p.M587I,GIMAP1−GIMAP5:p.S311C,GNA13:p.R200G,H1FOO:p.A214fs,HEATR7B2:p.E1109K,HIST1H1D:p.I81M,HRAS:p.G12D,HRCT1:p.H92P,ILF3:p.E484K,KCNK2:p.S6W,KIAA0907:p.Q446P,KIF23:p.E350K,KLF5:p.S118L,KLHL15:p.D185G,LAMA4:p.E639K,LILRA1:p.H410Y,LILRB1:p.L479del,LLGL2:p.P955fs,LPIN1:p.S974L,LRRC16A:p.D227N,LRTM2:p.S139L,LURAP1L:p.55_56insGGG,MAGEC1:p.P553del,MCL1:p.E171del,MN1:p.S472L,MUC7:p.A191V,MVP:p.E412K,NBPF10:p.E3455K,NFE2L2:p.E79K,NFE2L2:p.R34G,NOS1AP:p.Q306del,OR2T35:p.V319fs,OR4N2:p.L150fs,PABPC3:p.K333fs,PAX3:p.S197L,PBX2:p.E70K,PBXIP1:p.H729del,PCDP1:p.E537K,PEX1:p.I370fs,PHLDA3:p.E82K,PLEKHM2:p.S459L,PLVAP:p.A321V,POLR3B:p.L372F,POTEC:p.R477Q,PPL:p.H326Y,PPP1R15A:p.E196K,PRDM16:p.E271Q,PRIC285:p.E1289Q,PRMT8:p.S31P,PUF60:p.S396L,RAB11FIP4:p.S596L,RAD51C:p.D167N,RAD51C:p.Y224H,RALGPS1:p.R381Q,RARS2:p.R6C,RBM26:p.P644A,RERE:p.K176N,RXRA:p.S427Y,SERPINA12:p.R211G,SF3B1:p.E902K,SLC6A9:p.R243W,SLC9A5:p.L447F,SPESP1:p.F121L,SRPRB:p.G14S,SYN2:p.A34del,SYTL2:p.I440M,TAB3:p.R211T,TAF1B:p.R292C,TAOK2:p.L981del,TAS1R3:p.E525K,TAS2R9:p.E163Q,TBC1D1:p.S71F,TBC1D2B:p.R920Q,TFPI2:p.R222C,TM6SF1:p.S15W,TMEM131:p.K640fs,TMEM19:p.G331fs,TP53:p.R273C,TP53:p.R248W,TP53:p.R175H,TP53:p.K132N,TRAM1:p.E41Q,TSKS:p.E513K,TTN:p.C20935G,UBOX5:p.S417L,UGP2:p.D262H,VGF:p.E433K,XAB2:p.E782K,XYLB:p.S87F,ZC3H4:p.E798K,ZNF208:p.K852E,ZNF208:p.I647S,ZNF626:p.G198E,ZNF749:p.Q457E,ZNF761:p.H373R,ZNF799:p.T43A,ZNF799:p.W41G,ZNF799:p.E589G,ZNF844:p.P503R,ZNF845:p.M423T,ZNF845:p.T479M,ZNF860:p.H464R,ZNF878:p.S181R,ZNF91:p.R333H,及びZNF91:p.H305Rからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、GATA3:p.L328fs,GATA3:p.N334fs,GATA3:p.L344fs,GATA3:p.H400fs,GATA3:p.S408fs,GATA3:p.S430fs,GATA3:p.H434fs,GATA3:p.H435fs,及びGATA3:p.S408fsからなる群から選択されるフレームシフト突然変異の任意の組み合わせを含む、
段落30〜43のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、PIK3CA:p.H1047R,PIK3CA:p.E545K,PIK3CA:p.E542K,AKT1:p.E17K,TP53:p.R175H,PIK3CA:p.N345K,PIK3CA:p.H1047L,SF3B1:p.K700E,GATA3:p.S408fs,PIK3CA:p.E726K,TP53:p.Y220C,TP53:p.H193R,PIK3CA:p.Q546R,TP53:p.R273C,TP53:p.R248W,TP53:p.R273H,TP53:p.I195T,TP53:p.H179R,FGFR2:p.N549K,NUP93:p.E14K,PIK3CA:p.C420R,PIK3CA:p.E453K,PIK3CA:p.Q546K,TP53:p.V216M,TP53:p.C176F,CDH1:p.E243K,ERBB2:p.L755S,KRAS:p.G12V,PIK3CA:p.E545A,TBL1XR1:p.I141fs,TP53:p.G266E,TP53:p.R248Q,TP53:p.Y163C,TP53:p.C141Y,TP53:p.G108fs,ACPP:p.R43W,AKT2:p.I289M,ARHGAP9:p.R137C,C9orf174:p.R136W,CDC42BPA:p.P675T,COL12A1:p.S395L,CRISPLD1:p.R222W,CT47B1:p.234_243EKLTEEATEE>E,CYP1A2:p.V483M,DAB2IP:p.E161K,DGKB:p.S13L,DMD:p.K1772N,DPEP1:p.V11L,ERBB2:p.S310F,ERBB2:p.D769Y,ERBB3:p.E928G,ESYT1:p.R816W,FAM179A:p.A831T,FAM58BP:p.A70T,FMN2:p.S751F,GALNTL6:p.K567del,GATA3:p.L328fs,GATA3:p.N334fs,GATA3:p.L344fs,GATA3:p.H400fs,GATA3:p.S408fs,GATA3:p.S430fs,GATA3:p.H434fs,GATA3:p.H435fs,GDAP1:p.T307A,GRB14:p.A300T,GUCY2C:p.G549C,IL17B:p.R34W,KCNB2:p.R231H,KIF1B:p.R1320W,KIF26B:p.V1113M,KLF4:p.K434Q,LY9:p.I69L,MAP2K4:p.S184L,MAP2K4:p.S251I,MAP2K4:p.T261fs,MAP3K1:p.L318fs,MAP3K1:p.I761fs,MAP3K1:p.V1346del,MAP3K1:p.L1384fs,MAPK13:p.E315K,MAPK4:p.V100M,MARCH5:p.R170C,MBP:p.E120K,MEFV:p.R377H,METTL15:p.Q53E,MS4A4A:p.V99M,MUC17:p.R4415H,MYH6:p.T847M,MYO5B:p.A405V,NARS2:p.P240R,NLGN4X:p.D382N,NLRC4:p.R288W,OR13G1:p.R258H,OR2AK2:p.V45I,OTOF:p.T388M,PACSIN2:p.Q331H,PALM2−AKAP2:p.A299T,PCDH19:p.R286C,PCDHGC5:p.D664N,PIK3CA:p.R88Q,PIK3CA:p.E110del,PIK3CA:p.K111del,PIK3CA:p.PVPHGLEDL447del,PIK3CA:p.L455fs,PIK3CA:p.M1004I,PIK3CA:p.M1043I,PIK3CA:p.N1044Y,PIK3R1:p.KPDL567del,PREX2:p.R363Q,PRRX1:p.A196V,PTEN:p.V317fs,RGSL1:p.V222I,RUNX1:p.R142fs,RUNX1:p.D96fs,SCN2A:p.R36K,SLC25A32:p.Q83E,SLC25A45:p.G106C,STRA6:p.Q68R,STX6:p.H153D,TBX3:p.H187Y,TFPT:p.S252C,TINAG:p.R332W,TMEM71:p.R63Q,TP53:p.E286K,TP53:p.R282W,TP53:p.V272M,TP53:p.S241fs,TP53:p.C238fs,TP53:p.C238F,TP53:p.C238Y,TP53:p.Y234C,TP53:p.Y220S,TP53:p.R209fs,TP53:p.G199V,TP53:p.L194R,TP53:p.H193L,TP53:p.H193Y,TP53:p.V173L,TP53:p.V173M,TP53:p.K132N,TP53:p.R110fs,TUBD1:p.A200V,VLDLR:p.R231H,VWA3A:p.V955I,VWF:p.K1720N,XPO1:p.E571K,及びZNF268:p.F901delからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、KRAS:p.G12D,BRAF:p.V600E,KRAS:p.G12V,ACVR2A:p.K435fs,GRB14:p.KKK295del,SEC63:p.L532fs,TGFBR2:p.E125fs,ATR:p.K771fs,ICA1:p.N204fs,KRAS:p.G12C,TP53:p.R175H,ABCA8:p.R842Q,ACTL7B:p.R354H,ACVR2A:p.K435fs,AIM2:p.K340fs,ALG2:p.S302Y,ANKIB1:p.K144fs,ARSG:p.V131I,ATP10D:p.R311H,AXIN2:p.W663fs,C5orf30:p.D4N,CACNG3:p.V134I,CASP5:p.K78fs,CC2D2A:p.R1284C,CDH10:p.E349K,DNMT1:p.E432K,DOCK2:p.G170R,DOCK5:p.E177K,EGR2:p.R390H,ERBB3:p.V104M,FAM135B:p.R884H,FBXW7:p.R505C,FBXW7:p.R465H,FHDC1:p.R254W,FOXL1:p.N89K,HCN4:p.R525H,HLA−DMA:p.E84K,HTR3B:p.R236C,ITGA4:p.T673M,KIF18A:p.R17C,KIF20B:p.E991K,KLHL5:p.R326C,KRAS:p.A146T,KRAS:p.G13D,LPHN3:p.R1183Q,MAP2K4:p.R287H,MAPK8IP1:p.L217fs,MFSD5:p.R280Q,MUC16:p.R8606H,MYO6:p.D1180N,NAA25:p.S807Y,NBPF14:p.V44L,NRAS:p.Q61K,NRAS:p.G13R,PAX3:p.T424M,PGAM1:p.R240H,PHF3:p.R1410I,PIK3CA:p.R88Q,PIK3CA:p.E545K,PIK3CA:p.H1047R,PLXNA3:p.V14fs,POSTN:p.R508C,PTPRU:p.D1434N,PYGO2:p.Q150fs,RBBP7:p.E274K,SFPQ:p.R611Q,SGSM1:p.F1117L,SLC25A40:p.R96Q,SLC8A1:p.R431H,SLITRK3:p.S298L,SPATA22:p.S150L,SUN3:p.E128K,TGFBR1:p.S241L,TP53:p.R273H,TP53:p.R273C,TP53:p.R248W,TRPV5:p.R492H,USP40:p.S851L,VPS13C:p.D1359Y,ZBTB24:p.L607I,ZNF434:p.R306C,ZNF443:p.R301I,ZNF484:p.R138C,及びZNF770:p.S441Pからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、HSD17B7P2:p.N175S,IDH1:p.R132H,EGFR:p.A289V,EGFR:p.G598V,WASH3P:p.G175S,ZNF814:p.D404E,RPSA:p.Q111E,NBPF10:p.E3455K,TP53:p.R248Q,BRAF:p.V600E,EGFR:p.A289T,PRB2:p.N230del,RGPD5:p.P1760A,TP53:p.R175H,CHEK2:p.K373E,EGFR:p.R108K,EGFR:p.R222C,PIK3CA:p.E545K,PIK3R1:p.G376R,POTEC:p.K507E,SDHAP2:p.V195E,SLC6A10P:p.K88N,TP53:p.R282W,TP53:p.R273H,CD3EAP:p.K219del,DST:p.R146C,EGFR:p.A289D,EGFR:p.H304Y,FRG1B:p.S71N,GOLGA8DP:p.A116E,KRTAP4−11:p.R121K,KRTAP4−11:p.S48R,MAP3K1:p.P324L,OGDH:p.I78fs,PODXL:p.S162fs,PSPH:p.V145I,SPINT1:p.A316V,TP53:p.R248W,TP53:p.G245S,TP53:p.Y220C,TP53:p.R158H,TSHZ2:p.A222T,UBC:p.L149R,ZDHHC4:p.R300H,ZNF844:p.R447P,AASS:p.T878fs,ABCC10:p.R570W,ADAM29:p.V205I,ADAMTS8:p.V524M,AGAP3:p.R766W,AICDA:p.Y144F,AK7:p.A159V,AK8:p.D243A,ANO2:p.R334C,AOX1:p.A507V,ARHGAP5:p.M691L,CALN1:p.V231I,CARM1:p.A202V,CD163L1:p.V721M,CD1D:p.L25fs,CD209:p.A283T,CDH18:p.A195T,CILP2:p.V553M,CIZ1:p.L89P,CLOCK:p.L123fs,COL6A5:p.T2224M,CSF2RB:p.G298S,CSMD3:p.E171K,CYP2D6:p.H352R,DCAF12L1:p.R335H,DCAF12L2:p.R246H,DPP10:p.V183I,DPY19L2P1:p.R378Q,DQX1:p.R505H,DRD5:p.S275R,DVL2:p.V66G,EFCAB6:p.R379K,EGFR:p.L62R,EGFR:p.R252C,EGFR:p.P596S,EGFR:p.P596L,EGFR:p.G598A,EGFR:p.E709K,EPHA1:p.A184T,ERC2:p.R20H,ESPNP:p.R627Q,FAM126B:p.R382H,FBN3:p.V886I,FGF14:p.T229M,FLG2:p.H1901fs,FLG:p.R2886H,FLNA:p.V1240M,FOXG1:p.H57del,FPR2:p.R54Q,FRG1B:p.K13N,FRG1B:p.A53T,GABRA6:p.V314I,GJB3:p.R160H,GLT8D2:p.A178V,GRM3:p.R183C,HERC1:p.R2330H,HNF1B:p.T417M,HTRA3:p.Q403R,IDH1:p.R132G,IFNA10:p.L80F,IFNA10:p.V79A,JHDM1D:p.R313H,JPH1:p.A395T,KEL:p.V411M,KIAA0907:p.R516fs,KIAA1704:p.D88del,KLK6:p.R120H,KRAS:p.G12D,KRTAP4−7:p.L121V,KRTAP4−7:p.L148V,KRTAP5−4:p.S131C,LAT2:p.L18W,LIMK2:p.R203H,LUM:p.R330C,MCOLN3:p.V141I,MGAT4B:p.T444P,MUC17:p.V77M,MUC17:p.3204_3205insP,MYO1D:p.T109M,MYO6:p.Q914fs,NAP1L5:p.140_141EE>E,NF1:p.F1658fs,NHP2L1:p.R84C,NLRP5:p.R737W,NPTX1:p.A263T,NUFIP2:p.Q29del,ODF4:p.R61C,OR11H12:p.H154P,OR2A7:p.V18I,OR2H1:p.V287I,OR2T12:p.R184H,OR5D13:p.R236C,OR5P2:p.A100V,OR6N2:p.R293C,PASD1:p.A236del,PCDH11X:p.T486M,PCDHB13:p.P221L,PDGFRA:p.E229K,PDGFRB:p.S650L,PHC3:p.T35del,PIK3C2B:p.R287fs,PIK3CA:p.M1V,PIK3CA:p.R88Q,PIK3CA:p.M1043V,PIK3CA:p.H1047R,PIK3R1:p.K379N,PODNL1:p.A150V,POTEE:p.V166M,POTEG:p.R136H,PRKCD:p.G432fs,PROKR2:p.V297I,PTEN:p.C136Y,PTEN:p.S170N,PTEN:p.R173H,PTEN:p.T277I,PTEN:p.V317fs,PTPN14:p.E716del,R3HDM2:p.412_413QQ>Q,RAB11FIP5:p.R170H,RASAL3:p.R82H,RB1:p.N316fs,RDH8:p.A198V,REN:p.15_16LL>L,RIMBP2:p.R830H,SCAF11:p.E926fs,SCN7A:p.R1358H,SCNN1G:p.R564H,SDHAP2:p.R31C,SDHAP3:p.A66T,SEMG2:p.R292C,SH3RF2:p.R318C,SHB:p.A460T,SIGLEC10:p.T250M,SLC13A5:p.Q273P,SLC17A9:p.V324I,SLC22A9:p.R407Q,SLC26A3:p.V88I,SLC5A3:p.A302fs,SLC9A4:p.R631H,SPAM1:p.R346Q,SPEN:p.E803fs,SPTA1:p.A2011V,SUSD5:p.T513M,SYNE1:p.R8468H,TARSL2:p.G366D,TAS2R41:p.A255T,TAT:p.R367H,TFPI2:p.R206C,THSD7B:p.R90C,TMEM147:p.A92V,TMEM156:p.R81C,TMPRSS6:p.V302I,TNFSF9:p.A232T,TP53:p.C238F,TP53:p.C238Y,TP53:p.Y234C,TP53:p.V216M,TP53:p.H179R,TP53:p.T155N,TRAPPC10:p.K133fs,TTN:p.R21402W,TTN:p.V16403M,TUBBP5:p.V102M,TYRP1:p.T352fs,UBC:p.R73L,UGT2B28:p.P289H,USH2A:p.R3719H,WASH6P:p.L211V,ZFP42:p.V227I,ZFP42:p.T264M,ZNF181:p.V305G,ZNF280B:p.E400K,ZNF534:p.N583K,ZNF563:p.W208fs,ZNF844:p.F487L,及びZPBP:p.R154Cからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、PIK3CA:p.E545K,PIK3CA:p.E542K,TP53:p.R175H,PIK3CA:p.H1047R,TP53:p.R282W,TP53:p.R248Q,TP53:p.R273H,TP53:p.R248W,TP53:p.G245S,RHOA:p.E40Q,EP300:p.D1399N,HRAS:p.G13V,MB21D2:p.Q311E,NFE2L2:p.E79Q,TP53:p.H179Y,FBXW7:p.R505G,HIST1H2BF:p.E77K,HRAS:p.G12D,MAPK1:p.E322K,NFE2L2:p.D29H,TP53:p.P278S,TP53:p.C242F,TP53:p.Y220C,TP53:p.H193L,TP53:p.H179R,TP53:p.V157F,TP53:p.R110L,AKNAD1:p.K620R,ANXA6:p.R231Q,AP1G2:p.D243N,ATAD5:p.D441N,ATP6AP2:p.E119Q,B2M:p.M1I,BCL11A:p.E579K,C1orf172:p.Y30fs,C7orf57:p.E30K,CCDC135:p.E313K,CDH12:p.P706T,CDH7:p.Q225K,CDK11B:p.E79del,CDKN2A:p.H83Y,CHCHD4:p.T79M,CIRH1A:p.S250I,CLSTN2:p.P759L,CRB1:p.L628fs,DENND5B:p.G1023E,DNAH5:p.Q1797E,DSP:p.R160G,EDA:p.L58F,EFCAB6:p.E1002K,ELF4:p.S415L,EP300:p.C1164Y,EPHA3:p.T802R,EPHA6:p.D952H,ERBB2:p.M916I,ESRRA:p.D219N,FAM101A:p.I89del,FBXO24:p.M553V,FCAR:p.V233M,GPANK1:p.Y351fs,GPR20:p.V300I,GPRASP1:p.S706L,GPRIN3:p.R633fs,GRID2:p.T649fs,GRM3:p.F682L,GUCY2F:p.S404L,HCRTR2:p.D100Y,HIST1H3C:p.K37M,HIST1H4C:p.R68P,HLX:p.S12T,HOXD10:p.Y151C,HPS3:p.K812N,HRAS:p.G12A,HRAS:p.G12S,IFT140:p.E664K,INPPL1:p.T493M,ITGA10:p.R669Q,ITGB1:p.D158N,KIAA1429:p.D1526N,KIAA1429:p.S138F,KPRP:p.E553fs,KSR2:p.T555M,LINGO2:p.P410T,LPCAT1:p.V187del,MAGEB3:p.V75A,MAP3K7:p.E524Q,MAP4K3:p.P657fs,MAP9:p.K485N,MARS2:p.R481Q,MBOAT7:p.R424W,MUC16:p.R12774H,MUC5B:p.T4388M,MYH11:p.E993K,MYOCD:p.T493M,MYOM1:p.R63Q,NANOS3:p.S183L,NCOR1:p.R1561Q,NCOR1:p.Q169E,NCR1:p.D213N,NFE2L2:p.E79K,ODZ1:p.R366M,OPN1MW:p.A285T,OR2M2:p.A95fs,OR2M3:p.M273I,OR2T33:p.R120S,OR6V1:p.I248fs,PABPC5:p.P58L,PACSIN1:p.E359K,PIK3CA:p.M1043V,PIK3CA:p.H1047L,PIWIL1:p.V699M,PLIN5:p.430_431insNG,PLXNA3:p.P58S,PRB1:p.R274fs,PRSS1:p.D107N,RAC1:p.A159V,RGS7:p.L21fs,RPA1:p.R31H,RPL18:p.R178fs,SFI1:p.R821Q,SLC35D3:p.*417S,SLC5A7:p.G336C,SMARCA4:p.P913L,STAT3:p.D661V,SYCP2:p.K474N,SYT6:p.R249H,TBX21:p.E494K,THSD7A:p.R1046C,THSD7A:p.C728F,TMC3:p.R934S,TMTC2:p.T409R,TP53:p.E285K,TP53:p.C275F,TP53:p.R273C,TP53:p.G266E,TP53:p.G262V,TP53:p.R249S,TP53:p.G245V,TP53:p.C238F,TP53:p.M237I,TP53:p.Y236C,TP53:p.Y236D,TP53:p.R196P,TP53:p.PHHERC177del,TP53:p.V173L,TP53:p.V173M,TP53:p.Y163C,TP53:p.P151T,TP53:p.V143M,TP53:p.P58fs,URI1:p.S13fs,ZNF177:p.K384N,ZNF750:p.S96fs,及びZZZ3:p.R5Qからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、WASH3P:p.G175S,VHL:p.L89H,VHL:p.S111N,WDR52:p.V1227G,KRT1:p.552_559YGSGGSSY>Y,KRTAP1−1:p.S34C,PALM2−AKAP2:p.1075_1076insEA,ZNF814:p.D404E,DOPEY2:p.Y2048S,KAT2B:p.W111fs,PABPC1:p.E156fs,PCDHGC5:p.G599V,PIK3CA:p.E545K,RRAD:p.A278E,SIRPA:p.D131del,UQCRFS1:p.I83V,VHL:p.P45L,VHL:p.V74D,VHL:p.R82P,VHL:p.L116fs,VHL:p.L158V,VHL:p.L169P,WDR73:p.DGTRSQ315del,ABCA3:p.E95D,ABCC5:p.L1090fs,ACADS:p.R330H,ACAN:p.G952E,ACSM2A:p.L402fs,ADAM23:p.K380M,ADH1A:p.D154V,AFF3:p.SA620del,AGAP6:p.D69fs,AGAP7:p.E71fs,AHNAK:p.5_6insE,AIDA:p.K247M,ALAS1:p.G302R,ANAPC16:p.R95fs,ANK2:p.N453S,ANKRD36:p.K378R,ARHGEF5:p.E487G,ARSD:p.AGV234del,ARSD:p.A234G,ATP2A1:p.G704C,ATP7A:p.Q990fs,AVIL:p.G299fs,AXDND1:p.EQ991del,BAP1:p.N78S,BAP1:p.M1I,BLM:p.H660Q,BMPER:p.RIAL444del,BRK1:p.K70Q,BTRC:p.I416M,C16orf55:p.D118A,C19orf33:p.K102E,C20orf132:p.E382D,C2orf71:p.1225_1226insS,C6orf132:p.173_182PPPLLLEPPP>P,CASP5:p.R23fs,CATSPER4:p.T425M,CCDC120:p.I8V,CCR5:p.S185I,CCZ1:p.E214D,CD7:p.P174fs,CDAN1:p.L646fs,CDH23:p.F1132Y,CDK5RAP2:p.H1592Q,CENPB:p.E410V,CERCAM:p.A85fs,CHEK2:p.K373E,CHIT1:p.P284fs,CLCN2:p.645_645R>RR,CLUL1:p.G463R,CNTNAP4:p.Y436S,CUL9:p.D1726E,CWC25:p.K364E,CXorf51B:p.V43I,DDX39B:p.F149fs,DIRAS1:p.G79C,DISP2:p.F1021S,DNMBP:p.T78P,DOCK8:p.A177fs,DPCR1:p.H383N,DPCR1:p.L768del,EGFR:p.L838M,ENPEP:p.F289C,ESPNP:p.W122fs,FAM105A:p.H126N,FAM186A:p.IPPQAQELEIPL1556del,FAM194B:p.EEEEYL135del,FAM22F:p.S691del,FAM22F:p.P690fs,FAM47A:p.LRPEPPETGVSH235del,FAM47C:p.P388S,FAM78A:p.W192L,FBXO34:p.Q294fs,FGFR3:p.R571fs,FGFR3:p.P716H,FMN2:p.AIPPPPPLPGA956del,FOXD4L4:p.C405fs,FUT6:p.S140fs,GJA1:p.A311fs,GOLGA5:p.L492I,GPM6A:p.A50V,GPRIN1:p.231_239RKEDPGSLR>R,GRAMD1B:p.P356H,GREB1:p.S344Y,GRM6:p.A718fs,GUSB:p.L501V,GUSB:p.C500R,HBB:p.F86C,HDAC6:p.G977D,HEXDC:p.T482P,HNF1B:p.N302K,HNRPLL:p.M327V,HRC:p.P439fs,HSFX2:p.D92E,IL1RAP:p.F50C,IVL:p.EQQEGQLKHP167del,KANK4:p.S253P,KCNJ18:p.E378K,KIAA1751:p.K97N,KRT1:p.SSYGSGG557del,KRT2:p.L299W,KRT4:p.F154fs,KRTAP10−6:p.49_49P>PSCCAP,KRTAP5−7:p.C120Y,KRTAP9−2:p.CCQP140del,LARS:p.P185fs,LCP1:p.P445fs,LOC338651:p.PHRSHSPPWS102del,LRCH2:p.D717G,LTA4H:p.F107L,LYST:p.Q710H,MAFA:p.207_208HH>H,MAGEC1:p.P239del,MAP2K5:p.Q445R,MAPKAPK2:p.T214fs,MARCKS:p.K152fs,MED12L:p.P2071S,MEGF6:p.A582fs,MGST3:p.G143fs,MLXIPL:p.S790R,MOCOS:p.S849P,MST1R:p.M464V,MTOR:p.C1483F,MTOR:p.L1460P,MUC16:p.P11260A,MUC17:p.R1227fs,MUC17:p.H1228fs,MUC2:p.1480_1481insI,MUC6:p.P1569fs,MYO3A:p.N525S,NBPF3:p.D491V,NCOR1P1:p.L52P,NDUFA4L2:p.G3fs,NEFH:p.651_651K>KAKSPEK,NES:p.V611L,NFAT5:p.Q906E,NOXO1:p.G3fs,NR2C1:p.S270I,NSMCE2:p.Q31fs,NUDT21:p.W13fs,ODZ2:p.W628fs,ONECUT1:p.L424M,OR10A3:p.F73V,OR4F4:p.E15G,OR4N2:p.L150fs,OR51B5:p.A66fs,OR7C1:p.F104fs,PABPC1:p.Y408F,PABPC1:p.K333fs,PABPC1:p.A181T,PABPC3:p.P191T,PALLD:p.A996T,PALM2−AKAP2:p.G1118fs,PARD6A:p.G84fs,PASK:p.T62I,PCDH15:p.C1713F,PCNT:p.G136S,PGM5:p.G426fs,PGPEP1L:p.R164fs,PIK3C2B:p.F1473L,PIK3CA:p.N1044K,PIK3R5:p.L371R,PITRM1:p.P816T,PLIN4:p.T347I,PODXL:p.28_30PSP>P,POLR1C:p.K332Q,POTED:p.I214V,PPM1E:p.R311W,PRKCE:p.Q157fs,PROX1:p.V225D,PRRC2C:p.P1883T,PRX:p.P549L,PSD3:p.T563P,PTCH1:p.P689H,RANBP3:p.L386W,RASGEF1C:p.A188T,RGPD6:p.F946L,RHEB:p.Y35N,RIMBP3:p.A396del,RIN3:p.L449V,RLIM:p.S501L,RNF17:p.S351C,RUNX2:p.P466H,SCAF1:p.P208fs,SDK1:p.K508fs,SECISBP2:p.D608E,SERPINB3:p.S209C,SESTD1:p.I306M,SFRP4:p.P325fs,SH3KBP1:p.P563fs,SIPA1L3:p.G777A,SLC13A2:p.L493fs,SLC16A9:p.CVLLGG470del,SLC25A5:p.A118T,SLC44A5:p.V70F,SLC4A8:p.N229K,SLC52A1:p.G370del,SLC52A2:p.G399fs,SLC6A10P:p.K88N,SLC6A14:p.A85fs,SLC9B1:p.V446fs,SON:p.VLESSAVT1359del,SP8:p.G165del,SPAG1:p.353_354insD,SPATA9:p.C189F,SPEG:p.A992fs,SPTB:p.T1864I,SRA1:p.V110L,STAT6:p.P354fs,STK11IP:p.A155E,STXBP3:p.E279G,SVIL:p.M93T,SYNE1:p.R8468S,SYNJ2:p.K832T,SYNPO:p.G619fs,TAOK2:p.Q899fs,TAS2R38:p.I311T,TBC1D12:p.F608Y,TBC1D1:p.H277R,TBC1D3:p.A556fs,TBC1D3C:p.A495fs,TBC1D3F:p.A556fs,TCF7:p.H140P,TDRD10:p.W276C,THRAP3:p.K551R,TMEM102:p.A110P,TMEM161B:p.L142P,TMEM230:p.D140G,TMEM47:p.G87S,TRDN:p.*730Y,TTBK1:p.T1065S,UBE2O:p.R1118fs,UBR5:p.T1306fs,UPK3A:p.G272fs,VHL:p.G39S,VHL:p.S65L,VHL:p.N78D,VHL:p.R79P,VHL:p.W88L,VHL:p.L89P,VHL:p.R107P,VHL:p.S111R,VHL:p.H115N,VHL:p.D121Y,VHL:p.G123fs,VHL:p.D126fs,VHL:p.L128H,VHL:p.L135F,VHL:p.I151T,VHL:p.L153P,VHL:p.L158P,VHL:p.Q164fs,VHL:p.L184P,VHL:p.L188P,WASH6P:p.315_316insAPP,WASH6P:p.T201M,WWP2:p.G458A,ZCCHC6:p.K937N,ZFAND2B:p.I149T,ZFR2:p.Y107N,ZNF273:p.N319K,ZNF462:p.S650T,ZNF516:p.A256D,ZNF519:p.H431Y,ZNF687:p.F858C,ZNF732:p.E227Q,ZNF880:p.Q406R,ZP3:p.V362fs,及びZRANB1:p.*735fsからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、NPM1:p.W288fs,DNMT3A:p.R882H,NPM1:p.L287fs,IDH2:p.R140Q,IDH1:p.R132C,FLT3:p.D835Y,DNMT3A:p.R882C,FLT3:p.600_601insFREYEYD,IDH1:p.R132H,NRAS:p.G13D,U2AF1:p.S34F,KIT:p.D816V,FLT3:p.D835E,IDH2:p.R172K,NRAS:p.G12D,WT1:p.S381fs,ABTB1:p.L249fs,DNMT3A:p.R736H,FLT3:p.D835H,KRAS:p.G12D,NPM1:p.L287fs,NRAS:p.Q61H,NRAS:p.Q61K,PHACTR1:p.V251fs,RBBP4:p.E330K,RUNX1:p.R135G,及びU2AF1:p.S34Yからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一項に記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、KRAS:p.G12C,KRAS:p.G12V,EGFR:p.L858R,U2AF1:p.S34F,KRAS:p.G12A,TP53:p.R158L,KRAS:p.G12D,PIK3CA:p.E545K,TP53:p.R273L,EGFR:p.ELREA746del,KRAS:p.G13D,A2ML1:p.S654fs,BRAF:p.G469V,CTNNB1:p.S37F,EGFR:p.G719A,KRAS:p.G13C,MYOF:p.G165fs,EGFR:p.S768I,FAM47C:p.G948W,KRAS:p.Q61L,MYH10:p.L1091fs,NRAS:p.Q61L,OR4C3:p.H130fs,PI15:p.V22F,RAD50:p.D69Y,RIT1:p.M90I,TP53:p.C275F,TP53:p.R249M,TP53:p.R249G,TP53:p.R248P,TP53:p.R175H,TP53:p.Y163C,TP53:p.A159P,TP53:p.V157F,TP53:p.G154V,ABCB1:p.R467L,ACBD3:p.R224L,ACTA1:p.G275C,ACTN2:p.D893Y,ADAM30:p.Q741H,ADAMTS14:p.G238C,ADAMTS20:p.R1251S,ADAMTS20:p.R541L,ADAMTS5:p.L549M,ADAMTS9:p.G659W,ADCY2:p.P1016T,ADCY5:p.G623C,AFP:p.A182G,AHDC1:p.P155Q,AKAP1:p.LDRNEEG317del,ALKBH1:p.K137E,ANK2:p.Q3076L,ANKRD44:p.G339C,ANO3:p.A41S,AP1G1:p.R723L,APBB2:p.T243fs,APOB:p.L973M,APOBR:p.R840L,AQP10:p.Q261L,ARAP3:p.R1226L,ARFIP2:p.R86L,ARHGAP36:p.P16H,ARL13B:p.R358L,ASCC2:p.R365L,ASPM:p.S240F,ASXL3:p.P1470Q,ATRN:p.P197Q,AVIL:p.G64W,AXDND1:p.W101R,B3GAT1:p.R125L,BARX2:p.R68P,BCL9L:p.G980C,BCOR:p.N1459S,BEND2:p.P536Q,BMS1:p.G455V,BRAF:p.V600E,BRAF:p.G466V,BRD9:p.G330W,BRF1:p.V469L,BRWD3:p.H160N,BTRC:p.G260W,C11orf68:p.V135L,C15orf2:p.V753F,C15orf2:p.G906W,C18orf8:p.M61I,C1GALT1:p.G299V,C1orf173:p.G1454S,C1orf173:p.S688Y,C1orf87:p.R541L,C2orf53:p.P272H,C3orf20:p.R740L,C7:p.R687S,C7orf58:p.G140W,C7orf58:p.R238L,CACNA1A:p.S772Y,CACNA1D:p.R1073L,CACNA1E:p.R2089Q,CACNA2D1:p.A352E,CACNG3:p.R232W,CADPS:p.R959S,CALB2:p.R258C,CAMK2B:p.G131V,CARD11:p.I1065M,CCDC111:p.R417L,CCDC141:p.E1204V,CCDC19:p.R279L,CCDC19:p.R207L,CCKAR:p.L271M,CD1B:p.W41L,CDH10:p.S577R,CDH10:p.R472C,CDH10:p.R128S,CDH18:p.A721S,CDH20:p.P433H,CDH6:p.Q237K,CDK13:p.R880S,CDK4:p.R24L,CELF4:p.A309P,CFDP1:p.P129fs,CHN1:p.K264N,CHRNA4:p.S396R,CHRNA9:p.P361Q,CLCNKA:p.P124Q,CLEC12B:p.W217L,CLK4:p.R68L,CNTFR:p.D252Y,CNTN6:p.R807M,CNTNAP2:p.F395L,COL19A1:p.P538Q,COL5A2:p.G612W,COL5A2:p.G516W,COL9A1:p.P211Q,CPE:p.P290Q,CPNE8:p.Q127H,CPSF4:p.P219Q,CRIPAK:p.S180fs,CROT:p.Q580H,CRTC3:p.S363L,CSMD2:p.P1855Q,CSMD3:p.T2810N,CSMD3:p.P2727T,CSMD3:p.Q174H,CUBN:p.G596C,CUL4B:p.R91S,CUL7:p.L371F,CXCL9:p.K122N,CXCR4:p.E345Q,CXorf59:p.R198M,CYP11B1:p.R498G,CYP27A1:p.P112Q,CYP2B6:p.A444E,DACH2:p.R539L,DCC:p.R446H,DDX56:p.R329L,DEFA1:p.W90C,DENND2A:p.R688Q,DENND2A:p.R499L,DMBT1:p.R1521L,DNAH5:p.R3822L,DNAH9:p.S2993R,DNAI2:p.V231L,DPP6:p.L757F,DSG4:p.R128L,DST:p.A4410S,DZIP3:p.M322L,EBF3:p.R231S,EFCAB4B:p.E265Q,EHHADH:p.Q704H,ELAVL2:p.L263F,EMR1:p.R493H,ENAH:p.R514L,ENPP1:p.G738E,EPB41L3:p.A896S,EPG5:p.R2289L,EPHA1:p.G111V,EPHB6:p.R337H,EPRS:p.V1151L,ERBB2:p.S310Y,ERBB2:p.774_775insAYVM,ERBB2:p.776_776G>VC,ERN2:p.T295K,FAM120B:p.P467H,FAM127C:p.F52L,FAM135B:p.W240C,FAM210B:p.L112F,FAM47A:p.R690L,FAM47B:p.W163C,FAM47B:p.L567F,FAM5C:p.R457G,FAM70B:p.P277T,FAM71B:p.L583M,FAM75A6:p.R304S,FAM75A6:p.P54L,FAM75D1:p.R1265S,FARP1:p.R299L,FAT1:p.R4359L,FAT3:p.R1266H,FAT3:p.G1899V,FAT3:p.H3574N,FBXO18:p.M144I,FBXO31:p.G443fs,FCGBP:p.A1022S,FCRL2:p.V505L,FERD3L:p.P92H,FGB:p.E339Q,FGFR2:p.E116K,FGFRL1:p.R243L,FGFRL1:p.V274L,FKBPL:p.R320L,FLG2:p.G1545V,FLG2:p.L572F,FLG:p.P3254H,FLG:p.P2466Q,FMN2:p.P992T,FOLH1:p.A643S,FOXRED1:p.R136L,FRAS1:p.C382F,FRG2B:p.D142Y,FRMPD1:p.E1093Q,FSHB:p.T43N,GABRA5:p.Q224K,GADL1:p.L352I,GAL3ST3:p.A271S,GALNT14:p.D234E,GAS8:p.R313S,GATA3:p.M443I,GCDH:p.R82C,GEM:p.R268L,GFRAL:p.Q308K,GIT2:p.R123L,GJB4:p.R22S,GLB1L2:p.I407M,GLOD4:p.Q223fs,GNAO1:p.P283Q,GPNMB:p.I174M,GPR137B:p.G240C,GPR158:p.P762T,GPR98:p.G4307W,GRB7:p.R239L,GRHL1:p.G608W,GRID1:p.R683L,GRIK1:p.R368Q,GRM5:p.P895fs,GTF2E1:p.R192L,H3F3C:p.R131L,HAO2:p.H12N,HCN1:p.P231Q,HECW1:p.A183S,HGF:p.M686T,HIP1:p.R940L,HIST1H1E:p.R25P,HLA−DMA:p.A236fs,HOXA5:p.G11C,HS3ST3A1:p.G399W,HSD17B6:p.F209L,HSPA13:p.V85L,HSPBAP1:p.R282L,HTR5A:p.W298C,IGHMBP2:p.R615S,IL2:p.R103M,IL2RA:p.G61W,IL32:p.P215T,ING1:p.A220S,INMT:p.G56V,ITGA8:p.G616C,ITGAD:p.L528fs,ITGAX:p.R283H,ITIH1:p.G254W,ITIH2:p.L842V,ITK:p.R29L,ITPR2:p.P358Q,JMJD1C:p.R1198S,KCNA1:p.G376C,KCNH8:p.M455I,KCNJ3:p.L430F,KCNK18:p.G23V,KCNK2:p.R166L,KEAP1:p.G603W,KEAP1:p.R260L,KEAP1:p.S144F,KHDRBS2:p.S203L,KIAA1211:p.P1203Q,KIAA1549:p.L1272F,KIAA1755:p.Q108H,KIF15:p.E252Q,KIF9:p.G480R,KIRREL:p.G604C,KLF5:p.E419Q,KRAS:p.Q61H,KRTAP10−12:p.R64P,KRTAP27−1:p.M124I,KRTAP4−5:p.C91F,KRTAP5−1:p.S193Y,L1CAM:p.R632S,L3MBTL4:p.W162L,LAMA1:p.D1030Y,LAMB1:p.T1610fs,LAMB4:p.G1239W,LAMB4:p.G588W,LEF1:p.I53V,LEKR1:p.Q450K,LIM2:p.S150T,LIPJ:p.P236Q,LPHN3:p.E740D,LPPR4:p.R527S,LRFN5:p.N132K,LRP1B:p.G3563C,LRP2:p.M4039I,LRRC4C:p.Q10L,LRRIQ1:p.W792L,LRRTM4:p.S243Y,MAGEA10:p.R7H,MAGEC2:p.W109C,MAGI1:p.G1156V,MAGI2:p.P1044T,MAK:p.P373Q,MAP2K1:p.K57N,MARCH11:p.R193L,MEPE:p.G142C,MKI67:p.R1081S,MKRN3:p.P448H,MLL3:p.N393K,MLL3:p.Q356K,MMRN1:p.A1013S,MOGAT2:p.Q66fs,MXRA5:p.D324Y,MYH4:p.T790M,MYH8:p.R1117C,MYH8:p.H1006N,MYO5B:p.R708L,MYO7B:p.P2040H,MYO9B:p.R94L,MYT1L:p.P351Q,NAA11:p.T184K,NAB1:p.L72F,NAV1:p.R938L,NBPF15:p.G665E,NCAM2:p.G698C,NCAPD2:p.R220L,NDST3:p.V427I,NEK2:p.R239S,NFIA:p.L294F,NLRP3:p.R157C,NOTCH2:p.R2105L,NR4A2:p.R314L,NRG1:p.V481L,NRXN1:p.R813S,NRXN1:p.A660S,NRXN3:p.P23H,NRXN3:p.R103C,NTM:p.G333C,NUAK1:p.G173C,NYAP2:p.P437L,ODZ3:p.P218Q,OIT3:p.R508S,OOEP:p.R101C
,OPN1LW:p.P283H,OR10H4:p.M199I,OR10J1:p.L157Q,OR10X1:p.L298I,OR10Z1:p.L205F,OR14A16:p.G160C,OR2A25:p.M80I,OR2AG2:p.G249W,OR2AK2:p.W37C,OR2H2:p.L205F,OR2J2:p.G234W,OR2L13:p.M106I,OR2L13:p.T242A,OR2L3:p.M1I,OR2L3:p.L67I,OR2L8:p.R121C,OR2L8:p.R171S,OR2M2:p.F177L,OR2M2:p.F323L,OR2M5:p.V205L,OR2T12:p.M258L,OR2T27:p.D11Y,OR2T33:p.P165Q,OR2T34:p.C246F,OR2T6:p.V213L,OR4C12:p.D309Y,OR4C12:p.M279I,OR4C16:p.L162M,OR4M2:p.A119S,OR4M2:p.A161S,OR51V1:p.P298T,OR5AS1:p.M39I,OR5B12:p.S289C,OR5B17:p.M266I,OR5D14:p.H246N,OR5D16:p.P264T,OR5D18:p.R123H,OR5F1:p.G44V,OR5J2:p.A36S,OR5L1:p.T275N,OR6C65:p.I154fs,OR6C75:p.G94W,OR6K2:p.P79Q,OR8D2:p.R306M,OR9A2:p.R289W,OR9G9:p.R169L,P2RX7:p.P142Q,P2RY10:p.T10K,P2RY10:p.V196L,PABPC5:p.R99S,PAPPA2:p.P917T,PAPPA2:p.P1706H,PBLD:p.P55Q,PCDH10:p.R587S,PCDH10:p.V986L,PCDH11X:p.R1010I,PCDHAC2:p.A742V,PCDHB5:p.P649S,PCDHGC5:p.K12N,PCDHGC5:p.P684H,PCLO:p.P3946T,PCMTD1:p.R271M,PDPR:p.G793W,PDYN:p.G191W,PDZD2:p.R565S,PDZD8:p.S980G,PFKM:p.R118S,PIGM:p.R225L,PIK3CA:p.E542K,PIK3CG:p.V165I,PILRA:p.S291fs,PLCE1:p.G564C,PLCL1:p.M564I,PLEKHA6:p.R110L,PNKP:p.G174W,POGZ:p.G75W,POLE:p.R573L,POM121L12:p.P231T,POM121L12:p.P242H,POTEE:p.V288M,POTEM:p.S78R,POU3F3:p.D321Y,PPT2:p.R265L,PRDM16:p.P1036L,PRELP:p.D201Y,PRPF40B:p.R160S,PRPF6:p.R763L,PTEN:p.R234L,PTPN11:p.G503V,PTPN13:p.E2067K,PTPRJ:p.G334W,PTPRT:p.R928L,PTPRU:p.P559S,PXDNL:p.P1456T,QSOX1:p.R401L,QSOX2:p.R683L,RAB13:p.R167L,RAB8A:p.G20W,RAPGEFL1:p.R356L,RBM19:p.G390W,RCL1:p.P112Q,REG1B:p.W57L,REG3A:p.S150L,REG4:p.G110V,RIMS2:p.R55L,RIT2:p.R85L,RLN2:p.S138C,RNF20:p.P529Q,RORB:p.G94W,RPL10L:p.K187T,RPRD2:p.R97S,RTN1:p.S103W,RUNX2:p.R337M,RYR2:p.K2413N,RYR2:p.M4334I,RYR3:p.P1670T,S100PBP:p.R5L,S1PR1:p.L104F,SAGE1:p.H298Q,SALL1:p.E965K,SALL1:p.R898W,SALL4:p.R187L,SBSPON:p.G133W,SCAF8:p.G740C,SCG2:p.P252Q,SCML4:p.L261F,SCN2A:p.T155K,SEC24D:p.A50fs,SEC61A2:p.G126V,SERPINA12:p.D253Y,SERPINA9:p.M414I,SERPINC1:p.R45L,SGIP1:p.R502L,SH3GL3:p.R174L,SH3PXD2A:p.S759L,SI:p.V1217F,SKOR1:p.Y883C,SLC1A2:p.F348fs,SLC24A5:p.R35S,SLC25A48:p.R101S,SLC35E2:p.R201L,SLC39A12:p.C628S,SLC39A6:p.R53L,SLC4A5:p.I533V,SLC5A1:p.G53W,SLC5A7:p.G442V,SLC6A11:p.W299L,SLC6A2:p.S354C,SLC8A1:p.G433C,SLIT1:p.R1460L,SLITRK5:p.R68L,SLITRK5:p.R468M,SLITRK6:p.N741K,SORL1:p.R205L,SOS1:p.N233Y,SOX9:p.E75K,SPAG16:p.V439L,SPIN4:p.Y171C,SPRR2D:p.P30fs,SPTA1:p.G2367C,SPTA1:p.D2243Y,SSX3:p.P127T,ST18:p.H778Q,STAC3:p.G117W,STOML3:p.D86Y,STX2:p.R107L,SUMF2:p.G110E,SUN3:p.P339Q,SV2C:p.P60Q,SYNDIG1:p.D135Y,SYNE1:p.K8632E,TARS2:p.E199K,TAS2R16:p.Q177H,TCOF1:p.K264R,TCTE1:p.S127I,TDO2:p.Q197H,THSD7A:p.G810W,THSD7A:p.R801L,TIFAB:p.D43E,TIGD4:p.S312F,TLL1:p.P53Q,TMPRSS11E:p.G259C,TMTC1:p.A864D,TMTC1:p.G212V,TMX3:p.R151C,TNNI1:p.R67L,TNR:p.L692I,TOP2A:p.R736L,TP53:p.R337L,TP53:p.E285K,TP53:p.R283P,TP53:p.D281N,TP53:p.C277F,TP53:p.V274F,TP53:p.R273H,TP53:p.I255F,TP53:p.R249S,TP53:p.M237I,TP53:p.S215I,TP53:p.C176F,TP53:p.R110L,TP53:p.G105C,TP53:p.P72fs,TPO:p.E558K,TRAF6:p.R502S,TRIM42:p.Q127K,TRIM48:p.A93D,TRIM4:p.R398L,TRIM51:p.W131C,TRIM9:p.R337S,TRIML1:p.H399Q,TRPM3:p.G298W,TSC1:p.G378C,TSG101:p.R276S,TSHZ1:p.K501N,TSHZ3:p.G677V,TTF2:p.R761S,TUBA3C:p.Q176fs,UBAC1:p.K330N,UBE2J2:p.G193W,UBR1:p.G1647W,UGT2B7:p.M214I,VMP1:p.E369Q,VPS13B:p.G2575W,VSTM2A:p.G75V,VWA3B:p.R557L,WBP11:p.P227fs,WDR52:p.G612C,WDR59:p.R837S,WDR75:p.P287Q,WDR88:p.G100W,ZCCHC5:p.G335W,ZFHX4:p.L811F,ZFHX4:p.T1663N,ZFHX4:p.H2511Q,ZFP14:p.Q17L,ZIC1:p.A112E,ZNF154:p.T408N,ZNF223:p.G23W,ZNF295:p.S732C,ZNF322:p.K106N,ZNF385D:p.T226S,ZNF454:p.S190I,ZNF492:p.P392H,ZNF521:p.G640C,ZNF521:p.P270H,ZNF536:p.G186C,ZNF536:p.G663W,ZNF644:p.G21W,ZNF716:p.H263L,ZNF71:p.V411L,ZNF782:p.G484W,ZNF831:p.Q617K,ZNF98:p.C492F,及びZSWIM2:p.S214Yからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、PIK3CA:p.E545K,TP53:p.R158L,KRTAP5−5:p.GCG47del,NFE2L2:p.E79Q,CDKN2A:p.D108Y,DHX9:p.V40G,MAFA:p.207_208HH>H,NFE2L2:p.R34Q,PBX2:p.Y262F,PIK3CA:p.E542K,TP53:p.R273L,TP53:p.C242F,TP53:p.R175G,TP53:p.Y163C,TP53:p.V157F,AICDA:p.R131G,ALPK2:p.D53N,ANKFN1:p.M280I,ARPC1A:p.F212L,ASXL2:p.S1081L,C1orf74:p.D254N,C3orf30:p.D227E,CCDC121:p.W397L,CHN2:p.I43M,CLEC4C:p.R179L,CLN3:p.G206S,CNTN5:p.T178N,COL12A1:p.G2753C,CPS1:p.T855K,CSMD3:p.T1094K,CSMD3:p.Q691K,DDX11:p.R167T,EGFR:p.L861Q,EME1:p.D570H,EP300:p.D1399N,ESYT3:p.S574F,FAM135B:p.L648M,FAM135B:p.Q285H,FAM47A:p.G372W,FBXW7:p.R505G,FGFR3:p.S249C,GALNT13:p.G358C,GNL3L:p.K20N,GPC5:p.R347L,HCN1:p.A714S,HCN1:p.R659L,HCN1:p.G499V,HCN1:p.P326T,HERC2P3:p.A803V,HEXDC:p.T482P,HIST1H3B:p.E74K,HIST2H2BE:p.G54D,IFNA10:p.V79A,IL7R:p.S54L,INADL:p.P1340A,ISX:p.C2F,ITGAX:p.R685H,ITPR1:p.E1883Q,KCNN3:p.80_81insQQ,KEAP1:p.G480W,KEAP1:p.R470C,KEAP1:p.V155F,KIAA1751:p.L63F,KIAA2022:p.C345F,KIR3DL2:p.K229E,KLF5:p.E419Q,LAMA4:p.M1293I,LMLN:p.G199C,LRP2:p.A516V,LRRC66:p.F458L,LSG1:p.R517L,LUM:p.R310L,MB21D2:p.Q311E,MCHR1:p.S306F,MKRN3:p.G270V,MUC16:p.N11594K,NFE2L2:p.G81S,NFE2L2:p.G31A,NFE2L2:p.L30F,NFE2L2:p.D29H,OR2B11:p.G10V,OR2T2:p.F13V,OR4K2:p.C254F,OR51F2:p.R67P,OR51S1:p.R159Q,OR5D18:p.T271K,OR8H2:p.L166F,OR8J3:p.S160L,OR8K3:p.K235N,PCDHB1:p.N568K,PHIP:p.I1681M,PIK3CA:p.E726K,PIK3CA:p.H1047R,PLCE1:p.G439C,PRSS57:p.E39Q,PYHIN1:p.G148A,RANBP6:p.I984L,RBMXL1:p.G305C,REG1B:p.M67I,RGS6:p.W366L,RNF5:p.T136I,RP1:p.S1771L,RRP15:p.L214F,RYR2:p.E711K,SAMD3:p.Q206H,SLITRK3:p.R214L,SON:p.S908L,SP4:p.E11del,STK11:p.G279fs,TARBP1:p.L782V,TBCD:p.R476C,TMPRSS11F:p.R274Q,TP53:p.R337L,TP53:p.E271K,TP53:p.R267P,TP53:p.G245V,TP53:p.Y234C,TP53:p.Y220C,TP53:p.H214R,TP53:p.H193L,TP53:p.H179L,TPTE:p.M541I,TRIM7:p.L332I,TTN:p.T32425M,ZFP36L2:p.D240N,ZNF208:p.H883Q,ZNF48:p.R235H,ZNF626:p.K473R,ZNF676:p.P43T,ZZZ3:p.R162Qからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、TP53:p.R273H,TP53:p.Y220C,TP53:p.R248Q,TP53:p.R175H,TP53:p.R273C,TP53:p.I195T,TP53:p.R248W,TP53:p.R282W,TP53:p.C176Y,TP53:p.V157F,TP53:p.S241F,TP53:p.H179R,TP53:p.G245S,TP53:p.H193R,ADCY2:p.V888I,B2M:p.M1V,BAP1:p.R227C,CYP4A11:p.V185F,DNAH5:p.R3197Q,GART:p.K807fs,GRIN2B:p.R519Q,HRNR:p.M1fs,KLHL29:p.L716fs,KRAS:p.G12V,MGA:p.R2435Q,MYO3A:p.N525S,NPAS2:p.Q201R,NRAS:p.Q61R,PDAP1:p.K55fs,PGAP1:p.F565C,TP53:p.S315fs,TP53:p.C275Y,TP53:p.R273L,TP53:p.V272M,TP53:p.G266V,TP53:p.G266R,TP53:p.D259Y,TP53:p.P250L,TP53:p.G245D,TP53:p.G245V,TP53:p.G244C,TP53:p.C238fs,TP53:p.Y236C,TP53:p.Y234C,TP53:p.V216M,TP53:p.S215R,TP53:p.Y205C,TP53:p.L194R,TP53:p.P191del,TP53:p.Y163C,TP53:p.A159V,TP53:p.K132N,TRPC7:p.D210V,UXS1:p.V100L,WNT11:p.C344Y,及びZNF295:p.E885Aからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、KRAS:p.G12V,TP53:p.R273H,KRAS:p.A146T,KRAS:p.G12D,TP53:p.R175H,AKAP9:p.L3482I,APBA1:p.E624K,BAG5:p.D439N,C17orf97:p.E230D,CDH23:p.F177L,CERS3:p.E95D,DNAH5:p.R982H,ERBB2:p.V842I,GABRB3:p.D500N,KRAS:p.G13D,KRAS:p.G12C,KRAS:p.G12S,LRP6:p.R675Q,MACF1:p.F722L,MBOAT2:p.R43Q,MYO1D:p.E246K,NLRC4:p.E409K,NRAP:p.E327K,NRAS:p.Q61K,PCDH15:p.R1552I,PIK3CA:p.N345K,PIK3CA:p.E545K,POLE:p.S459F,PPP2R2B:p.P326L,SMAD4:p.R361H,TP53:p.R248W,ZFP2:p.R150I,及びZNF563:p.K26Nからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、BRAF:p.V600E,NRAS:p.Q61R,NRAS:p.Q61K,HSD17B7P2:p.N175S,BRAF:p.V600K,DISP1:p.G732L,IDH1:p.R132C,NRAS:p.Q61L,MUC16:p.P5119S,RAC1:p.P29S,WASH3P:p.G175S,AGAP9:p.M248V,C15orf23:p.S24F,DNAH5:p.D3236N,SPTLC3:p.R97K,TMC5:p.R276C,CFB:p.R314M,FRG1B:p.A50P,INMT:p.S212F,LOC649330:p.G93E,MAP2K1:p.P124S,RGS7:p.R44C,STK19:p.D89N,ADAM30:p.G97L,ARL16:p.G6R,ARMC4:p.E22K,BRAF:p.K601E,CAPN13:p.P405S,CD1C:p.R89C,CLCC1:p.P406Q,CNTN5:p.S379F,DNAH5:p.R742Q,EEF1B2:p.S43G,FRG1B:p.I59V,GABRG1:p.E205K,IARS2:p.R832C,IL32:p.D218fs,ISX:p.R86C,KLHDC7A:p.E635K,NAP1L4:p.P285Q,NBPF10:p.Q908E,OR2A5:p.S71L,OR4E2:p.R226Q,OR4M1:p.G41E,OR4M2:p.S268F,OR4N2:p.G41E,OR51B2:p.S163L,PCDHGC5:p.R293C,PCLO:p.R4133C,PHGDH:p.G173L,POTEG:p.D51N,PPP6C:p.R301C,PRAMEF11:p.C84S,PSG9:p.E404K,PTPRB:p.D1560N,RNF152:p.P95S,SPAG16:p.P488S,SPATA8:p.E18K,TAF1A:p.R172M,TCEB3C:p.E308K,THSD7B:p.E126K,TTN:p.E12129K,XIRP2:p.D2439N,及びZNF831:p.R1393Qからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、RPL22:p.K15fs,PTEN:p.R130G,PTEN:p.R130Q,KRAS:p.G12D,KRAS:p.G12V,PIK3CA:p.H1047R,PIK3CA:p.R88Q,PIK3CA:p.E545K,PTEN:p.V317fs,FGFR2:p.S252W,PIK3CA:p.E542K,CTNNB1:p.S37F,POLE:p.P286R,PPP2R1A:p.P179R,CTNNB1:p.S37C,KRAS:p.G13D,CTNNB1:p.D32N,CTNNB1:p.S33F,CTNNB1:p.G34R,KIAA2026:p.R574C,LIMCH1:p.R806fs,PIK3CA:p.H1047L,ALPK2:p.K523fs,CTNNB1:p.S33C,FBXW7:p.R505C,HPD:p.R284fs,KRAS:p.G12A,PIK3CA:p.R93Q,POLE:p.V411L,TP53:p.R248W,ABCA11P:p.R385I,ABI1:p.K445N,ACSM2B:p.K195N,APOB:p.F3102L,ASCC3:p.R136Q,C12orf4:p.R335Q,CCDC132:p.R838C,CHD4:p.R975H,CSDE1:p.R220C,CTNNB1:p.D32Y,CTNNB1:p.S33Y,CTNNB1:p.T41I,EXOC1:p.R588C,FBXW7:p.R465H,FGFR2:p.N549K,FUBP1:p.R430C,GEN1:p.S509L,IK:p.E90fs,KIF20B:p.E54K,MAX:p.H28R,MBOAT2:p.R43Q,METTL14:p.R298P,MFGE8:p.D170N,MS4A8B:p.S3L,NSMCE1:p.D244N,OXR1:p.E122K,PCDH19:p.E530K,PIK3CA:p.R108H,PIK3CA:p.N345K,PIK3CA:p.C420R,PIK3CA:p.Q546P,PIK3CA:p.Q546R,PTEN:p.R130L,RBL2:p.E127K,RXFP1:p.S223Y,SF3B1:p.R957Q,SLC20A1:p.P328fs,SOX17:p.S403I,TNS1:p.Q659del,TP53:p.R273H,TP53:p.R273C,TP53:p.R248Q,TTN:p.D16823N,TXNL1:p.R234C,ZFHX3:p.R1893fs,ZNF180:p.R625I,ZNF257:p.R392I,ZNF354B:p.D609N,ZNF43:p.R280C,ZNF709:p.R468I,ZNF765:p.S254L,ABCA5:p.R1476Q,ACVR1:p.R206H,ADAD1:p.S11L,ADAM9:p.R256Q,ADD3:p.E570K,ADGB:p.S1124L,AGXT2:p.R502C,AMBN:p.S225Y,ANKDD1A:p.R24H,ARHGEF33:p.R46I,ATP10B:p.L1304I,ATP2C1:p.E724K,ATP9A:p.R290Q,ATR:p.R1814fs,AVL9:p.F34L,BMPER:p.R241Q,BTN3A2:p.E153K,C14orf118:p.R279I,C14orf166B:p.F230L,C3orf23:p.R217C,C3orf62:p.R185Q,CACNA1C:p.S710L,CAGE1:p.E539K,CARD10:p.KE272del,CCDC144A:p.S1264L,CCDC168:p.D5020Y,CCDC36:p.R209I,CD55:p.E156K,CEP44:p.S253L,CIITA:p.E728K,CREBBP:p.P2094L,CTNNB1:p.S37A,CTTNBP2:p.S420L,DCT:p.R532Q,DIAPH2:p.E121K,DLG2:p.S624L,DNAH10:p.R1888Q,DNAH14:p.R1367C,DNAH7:p.R2961Q,DNAH8:p.R1347H,DNAJC13:p.E1248K,DNMT1:p.E51K,DST:p.S1767Y,DYNC2H1:p.E883D,EMR1:p.R631Q,EPHX4:p.R282Q,ERCC6L2:p.L445I,F10:p.E117K,FAM155B:p.E158K,FAM83B:p.R206Q,FARP1:p.S383L,FAT3:p.A4159T,FBXW7:p.R689W,FBXW7:p.R465C,FBXW7:p.G423V,FN1:p.R290C,FZD6:p.R416Q,GABRA3:p.R73H,GABRA4:p.R460Q,GALNTL2:p.E395K,GFAP:p.A233T,GGA2:p.A63V,GIGYF2:p.R227H,GNPTAB:p.R1189Q,GPR112:p.S1283Y,GPR98:p.R4142W,GRIA3:p.S646Y,GRM6:p.E363D,HMCN1:p.S133Y,HSPA4L:p.R483C,HTR2A:p.S219L,INTS7:p.R940C,INTS7:p.R106I,ITM2C:p.E167K,JAKMIP2:p.R283I,KCND3:p.S438L,KCNS2:p.D211N,KDM1B:p.F361L,KIAA0556:p.L330I,KIAA1147:p.A149V,KIF23:p.R150Q,KIF27:p.K925N,KIF9:p.R594Q,KLHL13:p.E213K,KLHL28:p.E33K,LIN9:p.R183W,LRBA:p.E2103K,LRP2:p.R2432I,MAGI2:p.L450M,MC5R:p.A109T,MEGF10:p.S1053L,MKI67:p.T1664fs,MKLN1:p.F485L,MMRN1:p.F917L,MSH4:p.E730K,MTOR:p.S2215Y,MUC7:p.S336L,MYBPC2:p.R646H,N4BP2L2:p.R506C,NAPSA:p.R121Q,NCOA7:p.E369D,NCR1:p.R258W,NEK11:p.R374Q,NHEJ1:p.R109Q,NNMT:p.E233K,NOTCH4:p.15_16LL>L,NPY1R:p.A371T,NRAS:p.Q61R,OGDHL:p.R57C,OMA1:p.R445Q,OPRM1:p.R462C,OR4C12:p.F248L,OR5AK2:p.K89N,OSBPL6:p.R577Q,PCDHAC2:p.K138N,PCDHB12:p.R289C,PCDHGC5:p.A70T,PIK3CA:p.R38H,PIK3CA:p.E39K,PIK3CA:p.E110del,PIK3CA:p.K111E,PIK3CA:p.Q546K,PIK3CA:p.M1043V,PIK3CA:p.M1043I,PLA2G3:p.R201Q,PLXNA1:p.E1295K,PON1:p.R306Q,POTEE:p.R303I,POTEF:p.K674N,PPP2R1A:p.S256F,PPP2R3B:p.F310L,PRAM1:p.A268T,PREX1:p.E1246K,PRKCQ:p.A324V,PTEN:p.R130P,PVRL4:p.A358T,RAI2:p.S385Y,RBM39:p.T353I,RELN:p.F2722L,RFPL1:p.R148Q,ROBO2:p.D1018N,ROS1:p.R245I,RPS6KA6:p.S394Y,RSBN1:p.E572K,RYR1:p.A2576T,SACS:p.R2906Q,SCAPER:p.R366Q,SELP:p.R429W,SENP7:p.S673Y,SEPHS1:p.E13K,SFRP4:p.R232Q,SGK1:p.K367del,SIX1:p.E191K,SLC10A7:p.S261L,SLC12A2:p.R828Q,SLC16A14:p.R495Q,SLC7A2:p.R322W,SMCR8:p.E175K,SOS1:p.N233Y,SPOP:p.E50K,STRN3:p.K218N,STXBP6:p.D92N,SULT1E1:p.R77Q,SUN3:p.L124I,SUSD1:p.R343C,SYNM:p.R516Q,TAF1:p.R843W,TDRD3:p.R322Q,THADA:p.S1941L,TLN2:p.S208L,TMEM161B:p.R315Q,TMPRSS3:p.R16Q,TP53:p.Y220C,TPTE:p.S423L,TRANK1:p.E846K,TRPC5:p.S490L,TRPM3:p.R429W,TSSK1B:p.E301K,TTLL7:p.R751H,TTN:p.S20317L,TTN:p.E6404K,TTN:p.R4434Q,TTN:p.R2506Q,UGT8:p.E102K,USF1:p.R52Q,USP16:p.R455Q,USP25:p.R873H,USP33:p.R36Q,VPRBP:p.R802Q,VPS13B:p.R692Q,WDR65:p.F110C,YTHDC2:p.E185K,ZFYVE1:p.R266Q,ZKSCAN1:p.R541fs,ZNF117:p.R157I,ZNF180:p.R569I,ZNF195:p.R59Q,ZNF254:p.K179N,ZNF263:p.R510I,ZNF333:p.R554Q,ZNF354B:p.R402I,ZNF442:p.R309Q,ZNF454:p.R376I,ZNF485:p.R374I,ZNF488:p.R206Q,ZNF559:p.E284K,ZNF594:p.R287I,ZNF611:p.R390I,ZNF645:p.R154C,ZNF649:p.R338Q,ZNF649:p.R198I,ZNF674:p.R405I,ZNF675:p.R220I,ZNF678:p.R564I,ZNF732:p.R354I,ZNF780A:p.R466Q,ZNF823:p.R547I,ZNF836:p.R854I,ZNF836:p.R630I,ZNF841:p.R757I,及びZNF98:p.R370Iからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、ZFPM1:p.EPL444del,GARS:p.P42A,ZNF517:p.V349A,LRIG1:p.L24V,CCDC102A:p.R96W,OPRD1:p.C27F,SOWAHA:p.R124P,LACTB:p.M5L,TOR3A:p.F13L,ZFPM1:p.E444fs,ZNF787:p.D367del,LRIG1:p.L26V,IRX3:p.L422P,TRIOBP:p.H1300R,TUBA1C:p.L146F,ZFPM1:p.P445fs,ZFPM1:p.446_447LA>P,TPO:p.S398T,USP42:p.R779P,ERCC2:p.D312N,GLTPD2:p.D209E,OTOP1:p.LLW104del,RINL:p.P402L,AMDHD1:p.S3G,ASPDH:p.Q266R,KCNK17:p.S21G,TMEM247:p.Q128E,MUC5B:p.D682G,OBSCN:p.R4516W,FAM184B:p.R784W,SEMA5B:p.V840D,ZNF598:p.E25G,ADAD2:p.G44E,C1orf106:p.R538C,ZAR1:p.Q42H,PANK2:p.G126A,PODXL:p.28_30PSP>P,SALL3:p.L593V,THEM4:p.L17R,C2orf81:p.T315P,CLDN23:p.V210M,FAM109A:p.GGG156del,FPGS:p.I22V,HHIPL1:p.V692A,MUC5B:p.M2869T,PLEC:p.R1386Q,SYT8:p.R373W,TAF5:p.S130A,TMEM189−UBE2V1:p.N6D,UQCRFS1:p.S6A,B3GNT6:p.L316fs,CCDC105:p.P499T,CLIC6:p.Q298E,IDUA:p.T374P,NOTCH2:p.C19W,RGS9BP:p.A96S,RREB1:p.G783V,SP8:p.G165del,WDR34:p.W60G,C19orf10:p.G12R,CELSR2:p.16_17insP,FAM75C1:p.71_71H>HLVSQRH,GPRIN2:p.R446H,KBTBD13:p.A81V,OGFR:p.S557T,PODXL:p.30_30P>PSP,BHLHE22:p.L62Q,C4orf32:p.G32E,C5orf65:p.Q245R,KNDC1:p.V806D,KRTAP10−6:p.49_49P>PSCCAP,LRP11:p.P92R,MAP1S:p.S411C,NOL9:p.S58A,RASIP1:p.R601C,RGMB:p.S63R,SARM1:p.R23P,TSC22D2:p.A419T,ZNF628:p.T230A,ZNF814:p.A337V,AATK:p.A541T,BTBD11:p.G265A,CRIPAK:p.C143R,KCTD3:p.F9V,KRT8:p.S59A,MUC5B:p.S681G,NCOR2:p.1846_1847insSSG,OGFR:p.E556K,APOE:p.C130R,C10orf95:p.A85S,C13orf33:p.R59G,CRIPAK:p.C174R,FAM18B2:p.C51Y,GLI3:p.P998L,GLTSCR2:p.Q389R,HECTD2:p.P19A,IRF2BPL:p.123_125QQQ>Q,MEX3C:p.179_182AAAA>A,NEFH:p.EE658del,RNF149:p.S9G,RNF222:p.A133T,SEZ6L2:p.R74P,TNIP2:p.R73G,ARRDC4:p.T79A,B3GNT6:p.P330fs,BAG1:p.G45R,C22orf26:p.P28L,CHDH:p.E40A,COQ2:p.V66L,CTGF:p.H83D,DLEU7:p.A83V,EPPK1:p.D2378H,FAM86C1:p.R30P,FZD1:p.93_94insP,GPRIN2:p.V241M,GPX1:p.11_13AAA>A,HES3:p.P96T,JMJD4:p.A11V,KANK3:p.R359H,LPPR2:p.A186S,NEFH:p.665_666insEE,NOM1:p.R24G,RNF39:p.G263C,SCRT1:p.S133A,SNED1:p.L1228P,TTLL11:p.122_123insKA,ZCCHC3:p.A159del,ZNF219:p.QP233del,ASB16:p.T249A,ASB2:p.H515P,ATP9B:p.S39G,AVL9:p.G7fs,C17orf96:p.L63V,C19orf29:p.A499V,CRB2:p.T1110M,CRIPAK:p.P173R,CRIPAK:p.I190L,CSGALNACT2:p.L362F,CTBS:p.LAL31del,CTNNB1:p.S45P,DMRT1:p.S45T,DOK7:p.G461D,FBRSL1:p.A836V,FEZ2:p.P50L,FRG1:p.S169N,HSD17B1:p.G313S,IBA57:p.S130R,KIF1A:p.E917D,KRTAP9−1:p.160_160Q>QPSCGSSCCQ,LURAP1L:p.55_56insGGG,NMU:p.A19E,NMU:p.A18E,NOXA1:p.D6E,NPTX1:p.G100D,PLIN5:p.R306W,TBP:p.95_96insQ,TMEM200C:p.S498G,TNXB:p.V706fs,VARS:p.P51S,ZC3H12D:p.P405S,及びZZEF1:p.V30Aからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、PIK3CA:p.E545K,PIK3CA:p.E542K,MAPK1:p.E322K,EP300:p.D1399N,ERBB2:p.S310F,ERBB3:p.V104M,KRAS:p.G12D,ANKRD12:p.E721Q,ANKRD36:p.M1144T,MICA:p.G318fs,PIK3CA:p.E726K,PTEN:p.R130Q,ABCD1:p.S606P,ACTL7B:p.E211K,ADAM21:p.F129C,ADAMTS12:p.P1053A,AKT1:p.E17K,ANKLE1:p.V643L,ANO3:p.M956I,AOAH:p.R326T,APOD:p.S115L,ASCC1:p.H207Y,ATM:p.S800F,AURKA:p.S387L,BAG5:p.M286I,C12orf43:p.E28Q,C16orf3:p.G65S,C3orf70:p.S6L,C4orf21:p.E800Q,CALB2:p.K60N,CALCB:p.R81T,CCDC152:p.E153Q,CCDC53:p.R58C,CDC27:p.P242S,CFHR5:p.R441H,CLOCK:p.L123fs,CMYA5:p.E2733K,CNTRL:p.P185S,CSHL1:p.R117Q,CSMD3:p.H952Y,CTNNB1:p.D32G,CTSH:p.E254Q,DHPS:p.F49L,DMPK:p.R44H,DNAH14:p.F622fs,DNAH3:p.E3367Q,DNAH8:p.E587D,DNASE1L1:p.D212N,ECE2:p.D254N,FAM71B:p.H445D,FAM73A:p.G23V,FAS:p.E261K,FBXW7:p.R505G,FBXW7:p.R465C,FEZF2:p.E82K,FKBPL:p.E161Q,FMNL1:p.E927Q,GPATCH3:p.E275Q,GPR142:p.R304T,GPRIN2:p.T100P,GRAMD2:p.I123M,HERC2:p.S329F,HGF:p.G229A,HIF3A:p.A72T,HIST1H1B:p.K188N,HIST1H2AL:p.R30P,HIST2H2AC:p.R30P,HLA−C:p.N104K,HLA−DPB1:p.G114fs,HRNR:p.G2539S,INVS:p.R799K,JPH3:p.Q433H,JUP:p.S627L,KIAA1211:p.R308fs,KIAA1211:p.E309fs,KLK2:p.E161K,KRAS:p.G13D,KRAS:p.G12V,LIN9:p.E231K,LOC151174:p.P90S,LRRC37A3:p.A406D,LRTM2:p.L176V,MEPE:p.S30T,MUC12:p.R2634C,MUC4:p.S2936L,MYOM2:p.D988N,NFE2L2:p.D29H,NOTCH2:p.R2298W,NPIPL1:p.P250L,NR5A2:p.E80K,NYAP2:p.R197Q,OBSL1:p.E1642K,OR13C2:p.L9V,OSBP:p.Q721H,PAOX:p.H107Y,PDILT:p.E500K,PIAS3:p.D460N,PLEKHO2:p.E351Q,PNRC1:p.R73C,PPP4R1:p.L597F,PREP:p.F469L,PRKDC:p.Q3568E,PSME3:p.R231W,RANBP6:p.R915W,RCAN2:p.D440N,RNPC3:p.E116fs,SDHAP1:p.H66Y,SDHAP2:p.S37fs,SERPINA3:p.K158N,SERPINA4:p.R98C,SF1:p.R255W,SGSM1:p.E818K,SIM1:p.V213M,SLC10A4:p.F281L,SLC25A5:p.I79F,SLC35G2:p.K62fs,SLC4A9:p.R617C,SLCO2A1:p.M479I,SND1:p.Q38E,SPATA17:p.R72K,SRSF12:p.S150C,TADA2B:p.E67K,TCTEX1D2:p.S74L,TEDDM1:p.M166I,TEX15:p.E1652Q,TMC2:p.E92D,TMEM131:p.E1319Q,TNKS2:p.T619fs,TNS1:p.Q659del,TP53:p.E285K,TRAF3:p.S9F,TRIM61:p.K98N,TRPM1:p.M996I,TUFT1:p.L101F,U2AF1:p.S34F,UNC93B1:p.V498M,USP4:p.L259V,VCAN:p.S1308C,WDR17:p.P278S,ZBED4:p.S385L,ZEB2:p.E1094K,ZFYVE9:p.M1147I,ZNF16:p.R452W,ZNF677:p.R131T,及びZSWIM4:p.E407Kからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、KRAS:p.G12D,KRAS:p.G12V,BRAF:p.V600E,KRAS:p.G13D,TP53:p.R175H,PIK3CA:p.E545K,FBXW7:p.R465H,KRAS:p.A146T,PIK3CA:p.H1047R,TP53:p.R248W,CDC27:p.D555E,SMAD4:p.R361H,TP53:p.R273H,KRAS:p.G12C,NRAS:p.Q61K,ERBB2:p.V842I,ERBB3:p.V104M,FBXW7:p.R465C,PIK3CA:p.R88Q,PIK3CA:p.E542K,TP53:p.R273C,TP53:p.G245S,AXIN2:p.G665fs,C16orf45:p.T106N,C20orf26:p.R1088Q,DNMT1:p.E432K,FBXW7:p.R505C,HLCS:p.E362K,HPSE2:p.K58N,KIF14:p.R598Q,KIF18A:p.R17C,KIF20B:p.E991K,KLHL5:p.R326C,KLK2:p.P57T,KRAS:p.G12A,KRAS:p.G12S,LPHN3:p.R1183Q,LRP6:p.R675Q,MYH8:p.R1048Q,NRAP:p.E327K,NRAS:p.G12C,PIK3CA:p.N345K,POSTN:p.R508C,PPP2R1A:p.R183W,PTEN:p.R130Q,RAF1:p.S257L,SDK1:p.T1181M,SGSM1:p.F1117L,TCF7L2:p.R482fs,TP53:p.R282W,TRIM23:p.R289Q,UGT8:p.E102K,ZNF491:p.R343Q,A2M:p.R732Q,AADACL4:p.A266T,ABCA8:p.E1158K,ABCA8:p.R842Q,ABCA8:p.A696T,ABCB8:p.R345H,ACACA:p.R1731C,ACADM:p.F48C,ACOT9:p.R50Q,ACPP:p.R105Q,ACTL7B:p.R354H,ACTL9:p.R331H,ACVR1:p.S290L,ADAM30:p.S314Y,ADAM32:p.R559Q,ADAMTS16:p.D817N,ADAMTS4:p.R156W,ADCY5:p.R661H,AGMAT:p.V313M,AGPAT4:p.A212T,AKAP12:p.E1282K,AKAP9:p.L3482I,ALB:p.S294L,ALDH1L1:p.A870T,ALG2:p.S302Y,AMOTL1:p.R676Q,AMPD1:p.K502N,AMPH:p.R292W,ANKRD6:p.R479C,APBA1:p.K730N,APBA1:p.E624K,APC:p.E847fs,APC:p.F1354fs,APC:p.M1413fs,APOB:p.R3136C,APOB:p.A43V,APPL1:p.R668W,AQPEP:p.A309T,ARF4:p.R149H,ARFGEF1:p.D1632N,ARHGAP32:p.E1253K,ARHGAP36:p.R128C,ARHGAP36:p.A147V,ARHGAP5:p.D890fs,ARNTL:p.T395M,ARPP21:p.R338H,ARSG:p.V131I,ASCC3:p.R1197Q,ATP10D:p.R311H,ATP6V0A4:p.R191Q,ATP9B:p.R265Q,AXDND1:p.E930D,AXIN2:p.W663fs,B2M:p.L13fs,B3GALNT1:p.R145Q,BACH1:p.R538Q,BAG5:p.D439N,BBOX1:p.F176V,BCL2L11:p.R91Q,BCL7A:p.T52M,BCLAF1:p.R37fs,BEND5:p.R198C,BICD2:p.R162H,BLVRA:p.S44L,BMP3:p.R344W,BNC2:p.R512W,BRPF1:p.R66C,BRWD3:p.R787C,BTBD7:p.S436L,BUB1B:p.F996L,BZRAP1:p.V1627I,C11orf30:p.R1111C,C14orf101:p.E295K,C14orf102:p.D115N,C14orf105:p.R100I,C15orf2:p.V488I,C15orf33:p.D340N,C16orf87:p.R151I,C1RL:p.L351fs,C22orf40:p.P32fs,C3orf39:p.R333W,C5orf30:p.D4N,C5orf4:p.R114Q,C6orf170:p.K724T,C7orf63:p.A10T,CACHD1:p.S720Y,CACNA1A:p.T665M,CACNA2D3:p.A332T,CACNB2:p.R608H,CACNG3:p.V134I,CACNG3:p.A138V,CACNG5:p.G121R,CADM1:p.S190L,CADPS:p.A1073T,CAPRIN2:p.E13K,CARD11:p.R423Q,CASC1:p.R54Q,CASP14:p.R5W,CBFB:p.E152K,CC2D2A:p.R1284C,CCDC18:p.K615N,CCDC60:p.R230H,CCDC81:p.R259I,CCDC88C:p.P1851fs,CCKBR:p.V236M,CD101:p.D283Y,CD101:p.R594Q,CD180:p.N228T,CDC14B:p.R375C,CDCA7L:p.P405fs,CDH10:p.E349K,CDH12:p.D674N,CDH20:p.A134V,CDH23:p.F177L,CDH2:p.D547Y,CDH9:p.F523L,CDK16:p.R108C,CEACAM5:p.L640I,CEP152:p.E21K,CERS3:p.E95D,CHD4:p.R975H,CHD5:p.A801T,CIZ1:p.V668A,CLEC18A:p.R423H,CLTCL1:p.R481W,CMAS:p.R110Q,CNRIP1:p.R102W,COBLL1:p.K732N,COL14A1:p.R1082I,COL17A1:p.P1004L,COL4A6:p.L550I,COL6A3:p.D2792N,COPB1:p.R425C,CORO2A:p.*526R,COX15:p.L86I,CSMD1:p.S781Y,CTCFL:p.E423K,CTDNEP1:p.E126K,CTTNBP2:p.R164C,CYP4B1:p.E434D,DACH2:p.R539C,DBC1:p.V216I,DBF4B:p.S254Y,DCHS2:p.F2149L,DCLK2:p.S549Y,DDI1:p.R275Q,DENND4A:p.P357H,DENND4C:p.R1081Q,DHTKD1:p.R410Q,DISP1:p.R763C,DKK2:p.R230H,DKK4:p.R203Q,DLC1:p.A350V,DLC1:p.E222D,DMD:p.R3195H,DNAH5:p.R982H,DNAH5:p.R224Q,DNAH9:p.D1547N,DNAJC24:p.E61K,DNM1:p.A251T,DNMT1:p.E1531Q,DNMT3B:p.R92W,DOCK10:p.A1830V,DOCK1:p.E864K,DOCK2:p.G170R,DOCK3:p.R1183C,DOCK5:p.E177K,DOK5:p.R274W,DPP8:p.G165R,DPY19L1:p.F378L,DUOX2:p.F880L,DVL2:p.A601fs,EBAG9:p.E187K,EBF3:p.G255fs,EDNRB:p.L450R,EGR2:p.R390H,EHD3:p.E44K,EIF2C1:p.R139Q,ELF3:p.F305fs,ELMOD2:p.T141M,EMR2:p.S75L,ENAM:p.R373H,ENOX2:p.R356W,ENTPD7:p.E327K,EPG5:p.D369N,EPHB2:p.R392H,ERCC6:p.V780I,ERCC6L:p.R505Q,ERRFI1:p.A421T,ESCO1:p.R300Q,ETV6:p.R369W,F8:p.S2269Y,FAM123B:p.F173fs,FAM135B:p.R884H,FAM169B:p.K165N,FAM170A:p.E56K,FAM171B:p.D459N,FAM181A:p.R109H,FAM5B:p.R402C,FBXO11:p.A432V,FBXW7:p.R689W,FBXW7:p.S582L,FBXW7:p.R14Q,FGF14:p.A236V,FHDC1:p.R254W,FHOD3:p.A225T,FHOD3:p.E813K,FMO3:p.F510L,FNDC1:p.R652H,FOXK1:p.R354W,FOXN3:p.P96fs,FPGT−TNNI3K:p.R455H,FZD3:p.D367N,GABRA4:p.R460Q,GABRA5:p.S126N,GABRB3:p.D500N,GALNTL5:p.R262I,GJA1:p.R362Q,GLRA3:p.L454I,GLRA3:p.F132L,GOLGA4:p.Q1536H,GP2:p.S41L,GPC6:p.A214T,GPLD1:p.R717Q,GPR125:p.R113Q,GPR156:p.F754L,GPR158:p.D566N,GPR21:p.R216H,GPR61:p.A62T,GPR98:p.R4142W,GPRC5A:p.V30I,GRAP2:p.E69D,GRIA1:p.R218C,GRIA2:p.R845Q,GRM7:p.R679Q,GTF3A:p.K306N,HAO1:p.R172C,HARS2:p.R168H,HBB:p.F42L,HCN4:p.R525H,HDAC5:p.A1044T,HGF:p.S467Y,HIPK4:p.R280H,HLA−DMA:p.E84K,HMG20A:p.E248D,HPS3:p.S468L,HRSP12:p.R120Q,HS3ST1:p.E287K,HTR3B:p.R236C,HTR5A:p.R152C,HTT:p.D1548N,HYDIN:p.R1187C,HYDIN:p.R939Q,HYDIN:p.R451Q,HYOU1:p.R158C,IFT172:p.A944V,IGJ:p.R77Q,IL17RA:p.Q803fs,IL1RAPL2:p.T647M,IL3:p.A90T,IL5RA:p.L47I,INPP5D:p.R523Q,INPP5K:p.R263C,IRAK3:p.R267Q,IREB2:p.R419Q,ITGA4:p.T673M,ITGA4:p.F900L,ITIH5:p.A912T,ITK:p.E196K,JAG1:p.A462T,JAK1:p.V310I,KAL1:p.V303I,KBTBD8:p.V549I,KCNA3:p.A415V,KCND3:p.S438L,KCNMB4:p.F209L,KCTD20:p.L314fs,KDELC1:p.L447I,KIAA0528:p.R181Q,KIAA0556:p.R1082W,KIAA1109:p.S4937Y,KIAA1804:p.V474M,KIAA1804:p.R477W,KIF16B:p.R145Q,KIF26B:p.A1114V,KPNA4:p.R29Q,KRAS:p.K117N,KRAS:p.Q61L,KRAS:p.Q61K,KRT6B:p.L197P,L1CAM:p.T186M,LALBA:p.A41T,LAMA4:p.A558V,LBX1:p.R176W,LPAR4:p.R145Q,LRP1B:p.K2623N,LRP2:p.R3043C,LRP2:p.S737L,LRRC18:p.R218W,LRRC31:p.K23T,LRRC7:p.R1389H,LZTS2:p.P100fs,MACF1:
p.S292L,MACF1:p.F722L,MAEL:p.R345C,MAGEE1:p.V380M,MAGI1:p.R1198C,MAP1B:p.E2046D,MAP2:p.K530N,MAP2K4:p.R287H,MAP3K4:p.R275Q,MAP7D2:p.R487C,MAPK8IP1:p.L217fs,MBOAT2:p.R43Q,MCF2L2:p.R926Q,MECOM:p.R969C,METTL16:p.R200Q,METTL21A:p.R174Q,METTL6:p.F56L,MFF:p.R162C,MFSD5:p.R280Q,MIA3:p.Q356H,MMAA:p.R326C,MORC1:p.D113Y,MORC2:p.R740H,MPDZ:p.L804I,MR1:p.S46L,MRPL47:p.L234I,MS4A8B:p.S3L,MSH4:p.K464N,MSH6:p.T1085fs,MSH6:p.R1095H,MUC16:p.R8606H,MYH13:p.D311N,MYH7:p.R1689C,MYO1D:p.E246K,MYO3A:p.N525H,MYO6:p.D1180N,MYO9A:p.R2179Q,MYO9A:p.R167Q,MYOZ2:p.E251K,MYT1:p.E226K,NAA25:p.S807Y,NCAM1:p.R474W,NCOA4:p.R562Q,NEB:p.D5434N,NEB:p.L1591I,NEB:p.E1214K,NEDD9:p.A798T,NEDD9:p.A316T,NEK1:p.R608C,NFASC:p.V256I,NINL:p.R1366C,NLRC4:p.D593N,NLRC4:p.E409K,NLRP4:p.V229I,NLRP5:p.R392H,NME9:p.E75K,NOLC1:p.T428M,NPC1:p.E451K,NPSR1:p.R235Q,NRAS:p.Q61L,NRAS:p.G13R,NRAS:p.G12D,NRG2:p.T246M,NTN4:p.E59K,NUB1:p.R373Q,NUDT15:p.S83Y,NUF2:p.S340L,NUP88:p.A302V,ODZ1:p.R2556W,OGDHL:p.A427T,OGFRL1:p.E427K,OLFM4:p.K132N,OPRM1:p.R353H,OR10A3:p.S93Y,OR2M3:p.R235H,OR52W1:p.R133C,OR5AU1:p.R312H,OR5B17:p.R163H,OR8S1:p.A99V,OSTN:p.R115Q,OTOL1:p.V431I,OTUD3:p.R277I,PAN3:p.S580N,PANK3:p.R260I,PAX3:p.T424M,PCBP1:p.L102Q,PCDH10:p.V477M,PCDH15:p.R1552I,PCDHAC2:p.A519T,PCDHAC2:p.E190K,PCDHAC2:p.A266T,PCDHAC2:p.A156V,PCDHAC2:p.E271K,PCDHAC2:p.A736V,PCDHB5:p.D51Y,PCDHB8:p.D235N,PCDHGC5:p.S289L,PCDHGC5:p.V662M,PCNXL2:p.R135Q,PCOLCE2:p.A348V,PCOLCE2:p.R87H,PDE4B:p.S417L,PGAM1:p.R240H,PHF3:p.R1410I,PIAS2:p.S519L,PIGR:p.A580T,PIK3CA:p.D350G,PIK3CA:p.E545A,PIK3CA:p.E545G,PIK3CA:p.Q546K,PIP4K2C:p.R204H,PKHD1L1:p.F1856L,PLA2G4A:p.E443K,PLCG2:p.E544K,PLCG2:p.D973N,PLEKHA6:p.V328fs,PLEKHG4B:p.E384K,PLK1:p.D233G,PLOD3:p.R297fs,PLSCR3:p.E77K,PLXNC1:p.S462L,PLXNC1:p.R819C,POLA1:p.E603D,POLE:p.S459F,POLE:p.V411L,POLQ:p.R860Q,PPP2R2B:p.P326L,PPP2R5C:p.S259Y,PRAMEF4:p.R248H,PREX1:p.V731I,PRKAA2:p.R407Q,PRKAR2B:p.S309L,PRKCI:p.R480C,PRKRA:p.K122N,PSG8:p.R397C,PSG8:p.R320C,PSMD12:p.R201Q,PTPDC1:p.R430W,PTPN12:p.R765Q,PTPN13:p.S887L,PTPRD:p.L1053I,PTPRU:p.D1434N,PXDN:p.P856fs,PXDNL:p.T1312M,QRSL1:p.S226L,RAB7L1:p.R79W,RALGAPA1:p.R398C,RANBP2:p.R1231C,RBBP7:p.E313K,RBBP7:p.E274K,RBFOX2:p.A340T,RBMXL1:p.R331Q,RHOBTB1:p.T464M,RIMS2:p.R599Q,RIN3:p.S708L,RLBP1:p.D281N,RLBP1:p.A72V,RNASET2:p.A127V,RNF113B:p.A172V,RNF150:p.R236Q,RNF150:p.S208L,RNF43:p.S216L,ROR2:p.D672N,RPL6:p.F193C,RPS6KA5:p.E166K,RSPO2:p.R28C,RUVBL1:p.E431K,RUVBL1:p.R117C,RWDD2B:p.R254H,RXFP3:p.R113C,RYR3:p.R2705Q,SAGE1:p.R229C,SCFD2:p.R545W,SCML4:p.R194Q,SCN10A:p.T1570M,SCN11A:p.A1688T,SCN11A:p.V1289I,SCN11A:p.V566I,SCUBE2:p.V342M,SEMA3A:p.D81N,SEMA4D:p.R252Q,SEPHS1:p.R371Q,SEZ6L:p.S207L,SFPQ:p.R611Q,SFSWAP:p.S617Y,SGCG:p.A220V,SGCZ:p.I41M,SH3TC2:p.R89C,SIGLEC11:p.S363F,SIPA1L1:p.R1063Q,SIPA1L1:p.S1227Y,SLC12A1:p.S292L,SLC22A15:p.S201L,SLC24A2:p.A134V,SLC25A40:p.R96Q,SLC2A7:p.A65T,SLC30A9:p.R194H,SLC33A1:p.S542L,SLC35F3:p.A280T,SLC39A7:p.R382C,SLC43A1:p.P133L,SLC43A3:p.R216H,SLC44A5:p.R185H,SLC6A2:p.A562T,SLC8A1:p.R431H,SLFN12L:p.F232fs,SLITRK1:p.R52H,SLITRK3:p.S298L,SMAD2:p.R321Q,SMARCA4:p.R381Q,SOCS5:p.S464L,SORBS1:p.V1156M,SORBS1:p.F570L,SORCS2:p.R320W,SOX6:p.R719W,SPATA22:p.S150L,SPEG:p.A944V,SPTB:p.R86C,SPTBN4:p.A1993V,STIM2:p.R572Q,STT3B:p.D583Y,SULT1C4:p.R85Q,SUN3:p.E128K,SUPT6H:p.A957T,SYNE1:p.I1249L,SYNE1:p.R170W,SYNE2:p.K3103N,SYNGR4:p.R169Q,SYT7:p.T349M,TANK:p.S380L,TAS1R2:p.R270C,TAS2R1:p.F183L,TCF7L2:p.R488C,TDRD10:p.S322L,TECTB:p.L29I,TEKT5:p.R401H,TGFBR1:p.S241L,THAP5:p.S287Y,THSD7B:p.R90H,TLL1:p.T153M,TLL2:p.S872L,TM9SF2:p.R91H,TMCC3:p.R110H,TMEM132A:p.R481C,TMEM132D:p.R578W,TMEM55A:p.R189Q,TMEM74:p.R125Q,TMPRSS11A:p.S288L,TNIP2:p.A139T,TOP2B:p.R656H,TOX:p.S354L,TP53:p.G244D,TP53:p.R175C,TPO:p.A826T,TPR:p.S2155L,TPTE2:p.R258Q,TPTE:p.S423L,TRAK1:p.D627N,TRAPPC11:p.R568Q,TRIM23:p.R396Q,TRIM44:p.D331N,TRIO:p.R661W,TRPA1:p.K54N,TRPC5:p.S490L,TRPM6:p.R995H,TRPM7:p.R1862C,TRPM7:p.R843Q,TRPS1:p.R1125W,TRPV5:p.R492H,TRRAP:p.R3515W,TSHZ1:p.R881M,TTC21A:p.S270Y,TTN:p.R22795C,TTN:p.R3193Q,TTN:p.R328H,TUBA3D:p.R243Q,TUFT1:p.A340T,TXNDC15:p.R343Q,UBE2NL:p.R86I,UBIAD1:p.A97T,UGT2A1:p.N97fs,USH2A:p.F2369L,USP11:p.A286T,USP25:p.R1119Q,USP26:p.R861Q,USP29:p.F81L,USP31:p.D391N,USP40:p.S851L,UTP14A:p.V148I,VAV3:p.E685K,VCAN:p.R1125H,VPS13C:p.D1359Y,WBSCR17:p.R228C,WDR3:p.E841K,WDR52:p.A157T,XKR6:p.R268Q,XPOT:p.R541W,YTHDC1:p.R267Q,YTHDC2:p.E634K,ZBBX:p.R596I,ZBTB24:p.L607I,ZC3H13:p.R103Q,ZCWPW2:p.D144N,ZEB2:p.R156H,ZFHX4:p.E237D,ZFP14:p.R386C,ZFP28:p.R525I,ZFP2:p.R150I,ZFP3:p.R273I,ZFP90:p.R330Q,ZHX2:p.V790I,ZIC4:p.S305L,ZIM3:p.D352N,ZKSCAN4:p.R319Q,ZMYM4:p.R1446Q,ZNF117:p.R185I,ZNF167:p.R683I,ZNF180:p.R401I,ZNF19:p.R349I,ZNF205:p.R384C,ZNF236:p.S1480L,ZNF248:p.R568I,ZNF259:p.R174I,ZNF266:p.R512Q,ZNF266:p.R344Q,ZNF280B:p.E363K,ZNF283:p.R392Q,ZNF32:p.S62L,ZNF345:p.R82Q,ZNF345:p.R334I,ZNF350:p.R310Q,ZNF434:p.R306C,ZNF439:p.E239D,ZNF439:p.R262I,ZNF443:p.R301I,ZNF445:p.L682M,ZNF470:p.R641I,ZNF471:p.R282I,ZNF484:p.R138C,ZNF528:p.R279Q,ZNF563:p.K26N,ZNF573:p.R350I,ZNF583:p.R344I,ZNF585A:p.E638K,ZNF585A:p.E491D,ZNF625:p.R235Q,ZNF652:p.K327N,ZNF677:p.R451I,ZNF678:p.R368I,ZNF699:p.R41I,ZNF70:p.R244I,ZNF770:p.S441P,ZNF774:p.R423Q,ZNF782:p.K247T,ZNF7:
p.R337I,及びZNF831:p.E949Dからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、EZH2:p.Y641F,MYD88:p.L273P,BCL2:p.G33R,CARD11:p.E626K,ADCY2:p.A87V,BCL2:p.N172S,BCL2:p.H20Q,BRAF:p.K601E,BTG1:p.L31F,CACNA1E:p.R1458C,CARD11:p.E93D,CD79B:p.Y197D,CD79B:p.Y197H,CREBBP:p.R1446H,GRID1:p.E622K,HIST1H1C:p.A65V,HIST1H1E:p.G133A,HIST1H3B:p.A48S,KRAS:p.G13D,MYD88:p.S251N,PABPC1:p.R94C,PIM1:p.L164F,PIM1:p.L184F,POU2F2:p.T239A,POU2F2:p.T239S,RELN:p.R2971Q,SLC25A48:p.A67T,STAT6:p.D468H,TNF:p.L47F,及びTRAF7:p.R11Hからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、ACR:p.W279C,AGRN:p.1284_1285VT>A,C7orf25:p.R384fs,CAMSAP1:p.T466fs,CBWD6:p.E102fs,DOCK8:p.L1111fs,EBPL:p.Q196P,EBPL:p.L189V,GFM1:p.A17fs,GOLGA6L6:p.D570E,ITGA5:p.A48D,LUZP2:p.S154fs,MTMR9:p.K193fs,MUC16:p.P10452fs,MUC4:p.S2832P,ODF2L:p.K407fs,RHBDD3:p.G34fs,RILPL1:p.S358R,TAS2R30:p.L236fs,TRRAP:p.A973S,UBR5:p.K2120fs,URGCP:p.G639fs,ZNF98:p.A222T,及びZSWIM6:p.Q610fsからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、FAM18B2:p.C51Y,ZNF598:p.E25G,NEFH:p.E645K,EEF1B2:p.S43G,NEFH:p.AKSPEKEE652del,OBP2B:p.K61N,SKI:p.A62G,C14orf126:p.R6W,KRT8:p.S59A,ACSBG2:p.I250M,ASIC2:p.R46L,CSGALNACT2:p.L362F,FRG1B:p.A50P,IDUA:p.H33Q,KRTAP4−5:p.S74C,SCAF11:p.E926fs,SYN2:p.A34del,ZNF814:p.R322K,BMS1:p.E878D,JMY:p.P822T,KIF1A:p.E917D,KRTAP4−7:p.S57P,LAMA5:p.L2223R,LRP1:p.P1058T,MED16:p.H449Q,MUC2:p.T1488P,MUC5B:p.D682G,NACA2:p.R75K,NEFH:p.665_666insEE,OR2L8:p.S201fs,RGPD5:p.P1760A,RRN3:p.P11S,RRN3:p.R9C,STAG3L2:p.L81fs,ZNF814:p.G320E,ACP6:p.V29G,AHNAK2:p.S2166F,AHNAK2:p.P1215S,AP1G1:p.I782fs,AQP2:p.N68T,BAIAP2L2:p.V396M,BMP6:p.Q118L,BST1:p.G36A,CDR1:p.V31A,CLDN7:p.S172A,CLIP1:p.S1018fs,COL18A1:p.G884fs,CROCC:p.A355P,CTAGE15P:p.A364V,CUBN:p.I2816M,DMRT2:p.T106S,DPY19L1:p.V249L,DSPP:p.D1047N,EBPL:p.L189V,EIF4G1:p.E465del,EXOSC2:p.R11P,FAM216A:p.P36S,FCGR2A:p.V222G,FMOD:p.S331R,FOLR2:p.Q112R,FRG1B:p.L20P,GAGE2B:p.9_10insY,GDPD5:p.G593fs,GIMAP8:p.A544S,GLUD2:p.R300G,GLUD2:p.S496R,GPR135:p.Q5P,HOXD8:p.Q67H,IER5:p.R194G,IL25:p.C168fs,JSRP1:p.V92A,KRAS:p.G12D,KRTAP1−1:p.Y86C,KRTAP4−11:p.L161V,LTBP1:p.L163P,MAML2:p.Q591K,MAPK7:p.A501D,MEF2A:p.P99S,MET:p.H1094Y,MET:p.M1250T,MST1:p.N435fs,MUC2:p.T1582R,MUC2:p.T1722I,MUC4:p.A4222T,MUC4:p.T2335M,MUC4:p.P1138L,MUC5B:p.S1098A,MUC5B:p.S3431N,MYH7:p.A1487T,NBPF10:p.R39fs,NBPF10:p.Y638S,NEFH:p.654_654S>SPEKAKS,PARG:p.A584T,PBX2:p.Y262F,PIP4K2A:p.R219K,RLIM:p.S471P,RUNX2:p.Q71E,SGK223:p.R63S,SMARCB1:p.L365fs,SRCAP:p.Q1875fs,TBC1D2B:p.R920Q,TCF7L2:p.R482fs,TMEM131:p.K640fs,TMEM60:p.K77fs,TPPP:p.R30K,TRPV3:p.A218E,TTBK2:p.C83W,UBXN11:p.S510G,UGT1A1:p.T4A,UTS2R:p.A289E,YBX1:p.P250L,ZNF514:p.V81G,ZNF516:p.A256D,ZNF681:p.K405Q,ZNF814:p.D404E,ZNF814:p.P323H,ZXDB:p.G206Rからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、TP53:p.R249S,CTNNB1:p.D32V,CTNNB1:p.D32G,CTNNB1:p.S33P,CTNNB1:p.K335I,CTNNB1:p.H36P,EEF1A1:p.T432L,GNAS:p.R844C,OR2T4:p.V137L,TP53:p.H193R,ATXN1:p.Q217H,CSMD3:p.F2383fs,CTNNB1:p.D32N,CTNNB1:p.S33C,CTNNB1:p.G34V,CTNNB1:p.S45P,CTNNB1:p.N387K,DHRS4:p.I218T,DNM2:p.E378D,F5:p.Q426L,GALNTL5:p.A45T,GPX1:p.P77R,GRM8:p.R852C,IDH1:p.R132C,KIF26B:p.A2033T,KRT8:p.S59A,LOC100132247:p.T532P,NEB:p.D3854H,PIK3CA:p.H1047R,SOLH:p.R714H,TP53:p.R158H,TP53:p.V157F,及びZNF638:p.D400Nからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、NRAS:p.Q61R,KRAS:p.Q61H,KRAS:p.G13D,NRAS:p.Q61K,BRAF:p.V600E,NRAS:p.Q61H,NRAS:p.G13R,ZNF717:p.W315C,ATP13A4:p.V431G,DNAJC12:p.R135K,IRF4:p.K123R,KRAS:p.A146T,KRAS:p.Q61R,KRAS:p.G12A,KRAS:p.G12D,ZNF717:p.N594I,ACTG1:p.A22P,ARL6IP1:p.M75L,BEND2:p.E630K,BRAF:p.G469A,CDHR1:p.R218G,DIS3:p.R780K,DMXL2:p.D2412E,DNAJC10:p.I80K,EGR1:p.Q9H,FGFR3:p.*807S,IDH1:p.R132C,IL6ST:p.P216H,INTS12:p.M1V,KRAS:p.K117N,KRAS:p.A59G,KRAS:p.G12R,MAX:p.R36W,MLL5:p.G492E,NBPF1:p.E810K,NRAS:p.Q61L,NRAS:p.G12D,ODF2L:p.E294K,PADI2:p.T114P,PNLIP:p.T37M,PRDM1:p.S588C,PTPN11:p.E76K,PTPN14:p.E286K,RBM6:p.V675G,SCN10A:p.R1142H,SRGAP1:p.T61M,SUSD1:p.T168P,TAS2R16:p.V231I,TINAG:p.E403K,TRIP12:p.L1775P,及びZNF717:p.C844Sからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、HSD17B7P2:p.N175S,RGPD5:p.P1760A,FRG1B:p.L52S,EEF1B2:p.S43G,FRG1B:p.I10T,FRG1B:p.A53T,LRRC37A2:p.T102S,NBPF10:p.E3455K,PTH2:p.L22V,CYP2D7P1:p.S32A,FAM47C:p.N648D,MAP3K9:p.E38del,MUC4:p.H4205Q,CHEK2:p.K373E,FRG1B:p.A11T,FRG1B:p.A50P,HLA−J:p.R124W,KRTAP1−5:p.I88T,KRTAP4−9:p.D18V,NPIP:p.A271V,PDGFRA:p.R483fs,ZNF780A:p.Q600H,ZNF845:p.R925H,ZNF91:p.R333H,ARFGAP3:p.N299fs,BTN2A3P:p.P3S,FNBP4:p.TT58del,HLA−A:p.Q78R,LOC554223:p.RAPWMEQ147del,PODXL:p.28_30PSP>P,POLI:p.D17del,SPOP:p.F133L,SYN2:p.A34del,TMEM52:p.23_26LLPL>L,UBC:p.L149R,ZNF208:p.I647S,ZNF799:p.E589G,ZNF814:p.D404E,ASTN2:p.L221del,B4GALNT1:p.G88fs,C16orf74:p.S21del,CCDC15:p.H458P,CD209:p.R129W,CNTNAP1:p.S1029I,DBR1:p.541_542DD>D,FAM22F:p.S691del,FRG1B:p.D32V,FRG1B:p.I34T,FRG1B:p.N55D,FRG1B:p.I59V,FRG1B:p.S71N,KIF25:p.W3R,KRTAP4−11:p.L161V,KRTAP4−11:p.M93V,KRTAP4−11:p.R51K,KRTAP4−6:p.S153Y,LILRB5:p.S598P,LMOD2:p.E124del,LOC645752:p.L40P,LRP1:p.P1058T,LRRIQ3:p.K244fs,LURAP1L:p.55_56insGGG,MLLT10:p.V463E,MYOCD:p.Q310del,NBPF10:p.N1369D,OTUD4:p.T909I,PARG:p.A584T,PEX1:p.I370fs,POTEC:p.K507E,POTEC:p.R477Q,POU4F2:p.68_69insG,PRG4:p.T417P,SDHAP2:p.R31C,SPOP:p.F133C,SPOP:p.W131G,TIMD4:p.T152del,TMEM121:p.P299del,TP53:p.G245S,UBC:p.R73L,UBC:p.I191T,WASH3P:p.G175S,ZMIZ1:p.D1048fs,ZNF709:p.T413I,ACADS:p.R330H,ADAMTS7:p.K1357fs,AFF2:p.R597H,AGAP6:p.S127I,AK302238:p.A44T,AK302879:p.Q191R,ALDH1A2:p.R85C,ANAPC1:p.T537A,ANKRD36C:p.H438R,AP4B1:p.R276W,ARFGAP2:p.S38N,BBS9:p.F268fs,BC139719:p.L133R,BRAF:p.G469A,C22orf43:p.D171del,CANT1:p.K131R,CHD3:p.E35del,CLEC4A:p.R209H,CNOT3:p.E20K,CNPY3:p.17_18LL>L,CNTNAP3B:p.S317T,CNTNAP3B:p.M1247I,CTNNB1:p.T41A,DDX10:p.D788del,DLC1:p.S741T,DPY19L2:p.M210V,EDC4:p.S617del,EFCAB6:p.R379K,ERC2:p.927_928HH>H,FAM111B:p.S269fs,FEM1A:p.L620M,FHOD3:p.A632fs,FLJ43860:p.L850fs,FMN2:p.G59del,FNBP4:p.914_915PP>P,FRG1:p.E86del,FRG1B:p.K13N,FRG1B:p.P42Q,GABRB1:p.R416C,GABRR2:p.A368V,GAGE2B:p.9_10insY,GOLGA8DP:p.N84H,GOT2:p.R355W,GPATCH4:p.K210fs,HDGFL1:p.188_189insA,HLA−DQB2:p.G250S,HLA−DQB2:p.R247H,IDH1:p.R132H,IL27:p.E176del,IRF2BPL:p.123_125QQQ>Q,KANK3:p.DGDS489del,KIAA1462:p.858_859SS>S,KRTAP4−11:p.S48R,KRTAP4−7:p.S57P,KRTAP4−8:p.C95S,LPHN3:p.R826H,LRP10:p.L11del,LRP5:p.S1609P,LRRC16B:p.R787W,MAS1L:p.R324G,MECOM:p.R915Q,MED12:p.L1224F,MED12L:p.Q2115del,MESP2:p.GQGQGQGQ195del,MGAT4C:p.T345M,MLEC:p.E238del,MSLNL:p.T68P,MUC7:p.S173P,MYC:p.Q37del,NBPF10:p.N440D,NLRP6:p.E611del,NOX3:p.C404fs,OR1M1:p.V69I,OR7E24:p.L7fs,OTUD4:p.A153del,PANK2:p.T417fs,PCLO:p.S496P,PCNT:p.S162G,PCSK9:p.23_24insL,PHOSPHO1:p.S32del,POU4F1:p.H108del,PRAMEF8:p.R319H,PRDM7:p.M387L,PRG4:p.T597P,PTPRD:p.R1323C,PTPRF:p.R1174Q,ROBO3:p.RS1367del,ROCK1:p.T518S,RPTN:p.G296S,RTL1:p.152_152E>EE,SIRPA:p.V233I,SLC2A6:p.A230D,SLC8A2:p.E710del,SMG7:p.E846fs,SNAPC4:p.S542del,SP8:p.G165del,SPOP:p.F133I,SPOP:p.F133V,SPOP:p.F102C,SPOP:p.F102V,SRSF11:p.G17fs,SRSF4:p.K396del,SSPO:p.S4198fs,STAG3L2:p.L81fs,STK19:p.R18fs,TBC1D2B:p.R920Q,TBC1D9:p.P1233T,TCHH:p.P1158R,TCOF1:p.K1366del,TNRC18:p.2664_2665SS>S,TP53:p.R248Q,TP53:p.R175H,TP53:p.C141G,TSPAN4:p.L92V,UBXN11:p.GPGPGPSP504del,UTP3:p.E81del,WASH3P:p.L187V,ZAN:p.P717L,ZAN:p.L878P,ZFP90:p.R591fs,ZNF761:p.H373R,及びZNF91:p.H305Rからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、RNF43:p.G659fs,BZRAP1:p.P1416fs,XYLT2:p.Y526fs,LARP4B:p.T163fs,PGM5:p.I98V,ZBTB20:p.P692fs,ARID1A:p.G1848fs,FHOD3:p.P334fs,KIAA0182:p.T120fs,ATP6V1B1:p.Y383fs,PIK3CA:p.H1047R,FRMD4A:p.P1005fs,PIK3CA:p.E545K,CDC14A:p.N123fs,KRAS:p.G13D,MLL2:p.T172fs,BCORL1:p.S1679fs,PLEKHA6:p.V328fs,C9orf131:p.P342fs,CD4:p.Q164fs,FBXW7:p.R465C,GNG12:p.T68fs,IRS4:p.G591fs,JARID2:p.V422fs,KIAA0195:p.I902fs,MBD6:p.P732fs,MVK:p.P138fs,PAMR1:p.G101fs,WNT16:p.W165fs,ZNF43:p.N251fs,ABCA6:p.L306fs,ADAM28:p.K73fs,AOC3:p.L79fs,ATP2A1:p.R819fs,B2M:p.L13fs,C6orf89:p.P58fs,CNTLN:p.K1305fs,CR2:p.V206fs,DYRK4:p.K468fs,ERBB3:p.V104M,GLI1:p.W272fs,KRAS:p.G12D,MLL2:p.T172fs,MSH6:p.T1085fs,NLK:p.C190fs,OR5M3:p.T89fs,PAX6:p.P375fs,PTEN:p.L265fs,RABGAP1:p.K928fs,RAD51AP2:p.T316fs,SVIL:p.G1862fs,TP53:p.R273H,WNK4:p.G606fs,ARID1A:p.P2139fs,AXIN2:p.G665fs,C13orf33:p.R67fs,C1QTNF5:p.P308fs,CELSR1:p.G614fs,CRYGD:p.G159fs,DCHS1:p.R235fs,DDC:p.I433fs,EDNRB:p.Y383fs,EPHA2:p.P460fs,FOXN3:p.P96fs,HDAC4:p.P901fs,INF2:p.S527fs,KIRREL2:p.V649fs,KLF3:p.I104fs,KLHL14:p.P231fs,MAP7D3:p.Q308fs,OTX2:p.R44fs,PAFAH1B1:p.K302fs,PLAGL2:p.P10fs,POLM:p.P97fs,PRPF40B:p.I31fs,RALGAPB:p.T379fs,SBNO1:p.N1139fs,SERPINI1:p.L81fs,SH3KBP1:p.L574fs,SLC12A7:p.H686fs,SLC27A3:p.P643fs,TBX4:p.S370fs,TP53:p.R273C,TP53:p.R175H,TRAM1L1:p.R345fs,WBP1:p.P138fs,ABCC4:p.L883fs,AKAP13:p.K2785fs,ALDH3A1:p.P562fs,ALPK2:p.L356fs,ARFGEF1:p.P1552fs,ARID1A:p.G1848fs,AVPR1A:p.F351fs,BAX:p.M38fs,C14orf43:p.P313fs,C1QTNF5:p.G194fs,C7orf50:p.L179fs,CDC25C:p.K322fs,CETN3:p.K63fs,CHD3:p.P597fs,CTCF:p.K202fs,CTSC:p.F105fs,DDX17:p.G163fs,DLGAP3:p.G377fs,EBF3:p.G255fs,FHDC1:p.F100fs,FILIP1L:p.K749fs,FLNB:p.W529fs,GBP7:p.G431fs,GCC2:p.E700fs,GPR161:p.G517fs,IWS1:p.S802fs,KIAA0240:p.K895fs,KIAA1967:p.P415fs,LRRC43:p.D558fs,MACF1:p.R707fs,MBD6:p.G780fs,MLL3:p.F4496fs,MPRIP:p.A351fs,MUC6:p.2129_2130SS>S,NOX5:p.P467fs,OPTN:p.P24fs,OR4K5:p.F177fs,PIK3CA:p.N345K,PIK3CA:p.E542K,PLXNA1:p.P1016fs,PNPLA7:p.P1199fs,PODN:p.I301fs,PPP2R3B:p.T389fs,PRSS36:p.L680fs,RGL2:p.G203fs,RHOQ:p.V190fs,RNF111:p.R771fs,RTN2:p.P313fs,SALL4:p.V995fs,SBF1:p.P1076fs,SETDB2:p.R715fs,SNAPC2:p.T292fs,SPG20:p.F232fs,SRCAP:p.P1876fs,STAT2:p.P489fs,TCHP:p.E172fs,TP53:p.R282W,TP53:p.R248Q,USP21:p.K474fs,WDR7:p.G262fs,ZBTB7C:p.E157fs,ZFC3H1:p.K385fs,ZNF124:p.T339fs,ZNF626:p.K115fs,ADNP2:p.S322fs,AGAP1:p.G127fs,ALDH2:p.L286fs,ARHGAP5:p.D890fs,ARHGEF17:p.A615fs,ARID1A:p.Y1324fs,ART1:p.I243fs,ASCL4:p.D35fs,ATXN2L:p.G998fs,B3GNT5:p.F30fs,BCKDHA:p.H37fs,BCL9L:p.P1127fs,BEND3:p.D265fs,BNC2:p.S575R,BRD3:p.P24fs,C12orf51:p.P4235fs,C1R:p.P216fs,C7orf49:p.G130fs,CA2:p.I145fs,CABP5:p.R145fs,CASD1:p.F781fs,CASP8:p.R471fs,CCDC153:p.P200fs,CD93:p.D280fs,CROT:p.L32fs,CSF3R:p.P468fs,CTCF:p.K202fs,ERBB2:p.S310F,FAM46D:p.S69R,FBN3:p.G601fs,FBXO21:p.F144fs,GAS6:p.G150fs,GLYR1:p.G380fs,GXYLT1:p.L223fs,HAUS6:p.S530fs,IGF2R:p.T1314fs,ITGB1:p.L378I,KDM3B:p.P1316fs,KIF13A:p.K1115fs,KLF3:p.S224fs,LARP1:p.A223fs,LRP1:p.G1488fs,LRP1:p.G1488fs,MAGEE2:p.Q45fs,MAMSTR:p.P162fs,MAPK15:p.Q511fs,MLL2:p.P647fs,MOCS2:p.P22fs,MTG1:p.L105fs,MTG1:p.H327fs,MTIF2:p.N109fs,NID2:p.R1035fs,PAX2:p.P395fs,PCCA:p.R230H,PDZD2:p.R101fs,PFKP:p.M593fs,PIK3CA:p.R88Q,PLA2G1B:p.L53fs,PLAU:p.R201fs,PMEPA1:p.P208fs,POP1:p.K750fs,PTCH1:p.P1307fs,PTPRT:p.P1075fs,RDBP:p.P6fs,RNMT:p.K392fs,ROBO2:p.P1080fs,RUNDC3B:p.L6fs,SDAD1:p.K275fs,SLC10A6:p.G109fs,SNAPC1:p.D211fs,SPATA5L1:p.C685fs,SPTA1:p.K1732T,STAT5B:p.P367fs,SYT4:p.M1fs,TAF1L:p.K851fs,TAP2:p.L75fs,TBL1XR1:p.N126fs,THEMIS:p.K406fs,TMEM79:p.P161fs,TP53:p.C176F,TP53BP2:p.K69fs,TP53RK:p.L174fs,UBQLN2:p.A523fs,UHRF1BP1:p.I1330fs,VPRBP:p.K939fs,VPS13B:p.T56fs,WASF3:p.P305fs,YLPM1:p.E1178fs,ZC3H13:p.K1006fs,ZC3H18:p.P825fs,ZC3H4:p.E779Q,ZNF48:p.P247fs,ZNF608:p.A465fs,ZNF878:p.S238fs,ZSCAN18:p.P225fs,ABCB1:p.R527fs,ABCB6:p.G318fs,ACACB:p.G255fs,ACP1:p.Q123fs,ACTL6A:p.L88fs,ADAMTSL4:p.G778fs,AGBL5:p.I420fs,AHI1:p.K303fs,AKAP9:p.M3743fs,AKD1:p.R1209fs,ANKRD40:p.D99E,ARHGEF5:p.S1512fs,ARID1A:p.K1071fs,ARID3A:p.S557G,ARPP21:p.I130fs,ASPN:p.F67fs,ASXL3:p.E873fs,ATP6V1C2:p.R312fs,BEST3:p.P444fs,BRAF:p.P403fs,BRMS1:p.G107fs,BTBD11:p.T451fs,BTBD11:p.A561V,C11orf9:p.S261fs,C14orf102:p.R90fs,C14orf43:p.Q36fs,C15orf52:p.G98fs,C19orf21:p.R262C,C19orf70:p.P50fs,C20orf160:p.P46fs,C3:p.P890fs,CADPS2:p.N468fs,CASC3:p.S232F,CASC3:p.P603L,CASC3:p.P645L,CASC3:p.S658L,CASKIN2:p.P727fs,CBLL1:p.E138fs,CBLN3:p.P69fs,CCDC108:p.P1164fs,CCDC148:p.K420fs,CCDC153:p.P200fs,CCDC169−SOHLH2:p.K162R,CCDC88A:p.K677fs,CD1E:p.F85V,CD3EAP:p.K218fs,CDH11:p.K357T,CDH1:p.D254Y,CDH23:p.V403I,CFI:p.K37fs,CHPF2:p.D645fs,CIC:p.R507fs,CIC:p.A1114fs,CIC:p.A1114fs,CLSTN1:p.T615M,CNBD1:p.L396P,CNGA4:p.K510T,CNOT6:p.S248fs,CNTROB:p.R920fs,COL9A1:p.P283fs,CPAMD8:p.P784fs,CR1L:p.L79fs,CRB1:p.F630V,CSMD1:p.L3410V,CTNNA3:p.K856fs,CTNND1:p.I447fs,CTSD:p.P89fs,CUX1:p.A439fs,CYP7B1:p.K332T,DAB2IP:p.D994fs,DNAH11:p.T871fs,DNAH8:p.K1688fs,DNAJC1:p.K193fs,DNM2:p.P791fs,DSTN:p.F101fs,DYRK1B:p.Q545fs,EAF2:p.V109fs,EDNRB:p.A104V,EEA1:p.N570fs,EFHA1:p.F290fs,EGR1:p.P332fs,EIF4G3:p.K563fs,ELK3:p.S173fs,ENTPD2:p.G204fs,EOMES:p.G332fs,EPHA10:p.P868fs,EPHB6:p.G54fs,EPHX1:p.P132fs,EPPK1:p.G2015fs,ERBB4:p.M1fs,ESF
1:p.T99fs,EXOSC8:p.L160fs,FAM113B:p.R51fs,FAM116A:p.L441fs,FAM135B:p.S645R,FAM151A:p.P117fs,FAM193A:p.D428fs,FAM193A:p.D428fs,FAM214B:p.A42fs,FAM40B:p.R740C,FAM70B:p.S19L,FASTKD1:p.K3fs,FBXW7:p.R479Q,FBXW9:p.G298fs,FER:p.L474fs,FERMT2:p.K152fs,FGGY:p.G138fs,FIGNL1:p.K309fs,FLG:p.K159fs,FLNB:p.W529fs,FOLH1:p.S501fs,FYB:p.G324fs,GABRD:p.Q412fs,GALNTL1:p.W317fs,GANAB:p.L23fs,GCDH:p.L389fs,GIMAP7:p.V276fs,GIPC3:p.G227fs,GLI3:p.P1033fs,GLIPR1L2:p.G92fs,GNPNAT1:p.F54fs,GON4L:p.M134fs,GPATCH4:p.K210fs,GRK4:p.K22fs,GTF3C1:p.S767fs,GTF3C4:p.E562fs,H2AFY2:p.K144fs,HCFC1R1:p.P83fs,HCRTR2:p.S9fs,HCRTR2:p.S9fs,HDLBP:p.G747fs,HECA:p.R333fs,HIVEP3:p.H554fs,HIVEP3:p.P534fs,HLA−C:p.P209fs,HOOK1:p.L361fs,HOXD8:p.P122fs,HTT:p.G697fs,IBTK:p.K1213fs,IDE:p.K37fs,IFT172:p.A837T,INPPL1:p.A974fs,INPPL1:p.P1154fs,INSM2:p.T533fs,INTS12:p.L14fs,INVS:p.R815fs,IPO11:p.S844fs,IRX6:p.A425V,ISG20L2:p.P288fs,ITGB8:p.A7fs,JARID2:p.G394fs,JHDM1D:p.R97fs,KBTBD6:p.G442fs,KCNC1:p.K455fs,KCNH2:p.G149A,KCNJ10:p.P102fs,KCNMB2:p.N151K,KCTD21:p.T6M,KIAA0586:p.A1592fs,KIAA1009:p.F406fs,KIAA1109:p.E1588fs,KIAA2026:p.K690fs,KIF26B:p.S1065fs,KIF6:p.L204fs,KIRREL:p.P335fs,KLC2:p.T568fs,KRAS:p.Q61H,KRAS:p.G12S,MAN1C1:p.G431fs,MAP1A:p.P2063fs,MAP2:p.K1472fs,MAP3K12:p.R449del,MAP7D1:p.A80fs,MGST2:p.K102fs,MKI67:p.T1664fs,MKL1:p.P307fs,MLL2:p.P2354fs,MLL2:p.L656fs,MLL2:p.P647fs,MLL2:p.L1877fs,MMP3:p.I64fs,MPDZ:p.K1582fs,MTUS2:p.R1005W,MUC16:p.A6156T,MYB:p.R481fs,MYEOV:p.L269fs,MYH11:p.K1263del,MYO18A:p.P209fs,MYO7A:p.I539fs,MYOCD:p.G226fs,NAA16:p.H514fs,NBEA:p.V2247fs,NCAPD3:p.Q909fs,NCAPH:p.T466fs,NCOR2:p.P1308fs,NEFM:p.A213V,NEK8:p.V690fs,NF1:p.T676fs,NHLRC1:p.F204fs,NKD1:p.P286fs,NPR3:p.Y138H,NT5M:p.P206fs,NUFIP2:p.R224fs,NUP210:p.L135fs,NYNRIN:p.G113fs,OBSCN:p.G997fs,OGDH:p.Y948fs,OR4C16:p.S135R,OR51A7:p.L124R,OR7C1:p.C179fs,OSBP2:p.H627fs,OTOF:p.E1304K,P2RX1:p.R20fs,PALB2:p.M296fs,PALB2:p.N280fs,PANK1:p.K400fs,PAPD4:p.C225fs,PAPPA2:p.I1683fs,PARP15:p.K461fs,PARP4:p.K847fs,PCDH10:p.N118fs,PCDH10:p.P225fs,PCGF3:p.H63fs,PELI2:p.G197fs,PHACTR1:p.V251fs,PHACTR2:p.S237fs,PHACTR4:p.S354fs,PHKB:p.K642fs,PIAS3:p.H116fs,PIGO:p.P787fs,PIGT:p.A346fs,PIK3R3:p.M341fs,PITPNM1:p.P295fs,PKN2:p.K76fs,PLA2G15:p.W230fs,PLAG1:p.K184fs,PLEKHO1:p.T254fs,PLOD3:p.R297fs,PLOD3:p.P296fs,PLXNA2:p.P464fs,POLQ:p.L1430fs,PPARGC1B:p.P135fs,PPL:p.P454fs,PPM1H:p.P226fs,PPP1R12C:p.P372fs,PREX2:p.R562fs,PRICKLE4:p.Q109fs,PRKAR1B:p.P87fs,PRKCG:p.R345C,PRMT8:p.S28fs,PROX1:p.F592fs,PRRG3:p.R163fs,PSD2:p.G256fs,PTCHD3:p.F588fs,PTPN4:p.N319fs,PTPRC:p.Q895H,PWWP2B:p.S84fs,PYGO2:p.Q150fs,RABGAP1:p.K928fs,RB1CC1:p.N1171fs,RBM6:p.R96fs,RHOA:p.Y42C,RIMS1:p.R71G,RIMS2:p.V401fs,RING1:p.G171fs,RINT1:p.L107fs,RNF43:p.P116fs,ROBO2:p.K1293fs,RPS6KA6:p.K109fs,RRS1:p.N45fs,RSF1:p.K386fs,RUSC2:p.P486fs,RXFP3:p.A60V,SAFB:p.W798fs,SCARF1:p.R614Q,SCLT1:p.K109fs,SERPINB12:p.Q168fs,SGK3:p.L61fs,SGOL2:p.E407fs,SIGLEC1:p.P318fs,SIK1:p.Q678fs,SLC16A6:p.G98fs,SLC25A17:p.F28fs,SLC26A7:p.I629fs,SLC32A1:p.V494I,SLC4A3:p.L1061fs,SLC7A10:p.P157fs,SLC9A2:p.T746fs,SLITRK1:p.K45fs,SND1:p.H721fs,SOAT1:p.F64fs,SORBS2:p.E1158fs,SOX7:p.L309fs,SPAG17:p.Q1264fs,SPTY2D1:p.P485fs,SRCIN1:p.P865fs,SREBF2:p.H763fs,SRRT:p.G102fs,STAB1:p.P1120fs,STRADA:p.R333fs,STX2:p.K252fs,SV2A:p.E138fs,SYCP2:p.M176fs,SYNJ2:p.P1111fs,TAS2R10:p.L196fs,TBC1D22B:p.A175fs,TEAD2:p.P298fs,TFE3:p.G482fs,TGM6:p.T358fs,TIMM44:p.K83fs,TIMP3:p.A199fs,TLR4:p.L498V,TMEM132D:p.P206fs,TMEM41A:p.F156fs,TMEM41B:p.F230fs,TMTC4:p.R611C,TNK2:p.P632fs,TOPBP1:p.I1381fs,TP53:p.E286K,TP53:p.P152fs,TRIP11:p.K541fs,TRPA1:p.T673fs,TRPM8:p.H765fs,TTF1:p.K336fs,TTI1:p.R707H,TTN:p.E15192D,U2AF2:p.L175fs,UBC:p.G684fs,UBR4:p.P2802fs,UPF2:p.E1033D,UPK2:p.P49fs,USP13:p.I116fs,USP15:p.K782fs,VASH1:p.G3fs,VEZF1:p.355_356insN,VPS13A:p.F2883fs,WAPAL:p.R522fs,WDFY3:p.L1842fs,WDR59:p.N160fs,WDR5:p.N214fs,WDR60:p.Q412fs,WDTC1:p.M287fs,WHSC1L1:p.K418fs,WNT1:p.W167fs,XIRP2:p.E1007D,YBX2:p.P226fs,YIF1A:p.R131fs,ZBBX:p.E151del,ZBTB40:p.L262fs,ZBTB7C:p.G342fs,ZBTB7C:p.D154fs,ZC3H18:p.T701fs,ZDHHC5:p.E651del,ZDHHC7:p.P316fs,ZFHX3:p.R1893fs,ZFHX3:p.E763fs,ZFHX4:p.L408fs,ZHX3:p.N249K,ZIM3:p.I384fs,ZKSCAN5:p.D13fs,ZMYM4:p.K345fs,ZNF236:p.T1410M,ZNF23:p.F122fs,ZNF334:p.K426fs,ZNF358:p.T130fs,ZNF701:p.L296fs,ZNF711:p.L737fs,及びZNF831:p.A49fsからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、FAM18B2:p.C51Y,BTN2A3P:p.P3S,MUC2:p.G1715S,NBPF10:p.L44V,SP8:p.G156S,DCP1B:p.Q252H,DEK:p.E41D,ERC1:p.K692R,FAM104B:p.D75H,FRG1B:p.M49V,KRTAP10−10:p.V234M,LRRCC1:p.A6V,NRAS:p.Q61R,PNPLA4:p.L223P,ANKLE1:p.C644fs,ANKLE1:p.C644fs,KIT:p.D816H,KIT:p.D816Y,MUC2:p.T1597I,PSMD11:p.A5V,RHPN2:p.V73M,RUNX2:p.Q71E,SP4:p.E7K,TUBA1C:p.L146F,ZNF814:p.Y324H,ADAMTS17:p.N572T,ATRX:p.K1936R,BCL11B:p.E535D,BMP2K:p.Q460H,BMP2K:p.H487Q,C12orf32:p.D60V,C22orf43:p.K19E,CDC27:p.N571I,CDC27:p.P242S,DDX11:p.K208fs,EBPL:p.L189V,EZH2:p.K510R,FAM86A:p.A141T,GAS2L2:p.D189A,GRID2IP:p.LS754del,HGC6.3:p.E171G,KIT:p.D816V,KIT:p.N822Y,KIT:p.N822K,KRAS:p.Q61R,KRAS:p.G12V,KRTAP1−1:p.I116V,LRRC37BP1:p.Y166D,MEF2A:p.R127Q,MFF:p.S7F,MST1:p.R347W,MUC4:p.S3048L,MUC6:p.H2000Q,MUC6:p.P1977H,NAT10:p.I393T,OPLAH:p.A900D,PIEZO1:p.Q749E,PRAMEF4:p.F300V,RBM10:p.E184D,SERINC2:p.T121P,SPIN2A:p.M150V,SRRM2:p.A2257S,SSBP3:p.K6R,ZNF680:p.R501W,ABCC8:p.Y512C,ABCC9:p.L466P,ABCD1:p.H169Q,ABL2:p.P19T,ACVR2B:p.R48C,AHDC1:p.P33fs,AHNAK2:p.L1640M,ALPPL2:p.W31S,AMMECR1:p.G77C,ANK3:p.D1322E,ANKHD1−EIF4EBP3:p.G60S,ANKRD11:p.Y2015S,ANKRD11:p.K369R,ANKRD50:p.V637M,APBB3:p.L450P,ARHGAP24:p.T35A,ARID4B:p.G1076A,ARMC3:p.A514T,ARRB2:p.T99P,ATAD5:p.I305V,ATXN3:p.305_306insQQQQQQQ,AVPR1B:p.G39R,AXDND1:p.E994Q,BAI2:p.A231G,BEST3:p.P383L,BIRC6:p.V414L,BIRC8:p.A225M,BRWD1:p.K1319R,BTN2A2:p.L15F,C12orf51:p.A2644T,C12orf65:p.K143T,C16orf62:p.L244I,C1QBP:p.T225I,C1orf167:p.S123G,C5orf25:p.Y4F,CACNA1E:p.G2080S,CAPNS1:p.LV303del,CCDC159:p.A332S,CDKAL1:p.P409L,CDYL:p.V48A,CDYL:p.A60G,CELSR2:p.L17P,CHD4:p.E138D,CKAP5:p.G576A,CLCC1:p.K52R,CMTM8:p.S26T,CNKSR2:p.P249L,CNTN5:p.I501T,COG5:p.H617R,COL15A1:p.K708R,COL6A3:p.A2378D,CRYGB:p.R143G,CSGALNACT2:p.L362F,CUL4A:p.I438F,CXXC1:p.Q156H,CYP19A1:p.F406L,DCLRE1B:p.F28I,DDX11:p.A376T,DDX11:p.E680D,DEPDC5:p.R1525Q,DLC1:p.S741T,DNMT1:p.R995Q,DOCK11:p.Q169E,DSPP:p.D1047N,E2F7:p.I91S,EBF1:p.D353G,ECI2:p.K55R,EEF1A2:p.Y418S,EIF3J:p.A8G,EML6:p.K805R,EPAS1:p.S474T,EPRS:p.L1335I,ERICH1:p.E327K,FAM101B:p.L5P,FAM104A:p.M1R,FAM110D:p.R71H,FAM155A:p.Q95R,FAM186A:p.G1492E,FAM194B:p.Y139H,FAM21B:p.P1231S,FAM32A:p.K9R,FAM46B:p.H416R,FAM48B1:p.I499V,FAM48B1:p.A516P,FAM5C:p.S425W,FAM86C2P:p.C120Y,FBXL14:p.V48G,FRMPD3:p.Q832del,FRS2:p.L47S,GDF5:p.E105fs,GPNMB:p.C3fs,GPT2:p.R10P,H2AFV:p.Q125R,HDLBP:p.R503C,HERC2:p.R2129C,HIST1H2BJ:p.K13R,HLX:p.N231K,HMGB3:p.E198D,HSF4:p.R169W,HSF4:p.S491P,HYAL4:p.D222N,INO80E:p.P206fs,INTS4:p.S460A,IQCF6:p.R3H,ITPR1:p.M1569I,ITPR3:p.R1698G,KANSL3:p.G376E,KCNA4:p.E627del,KDM5A:p.P423S,KDM6A:p.Y362fs,KIAA0020:p.K63R,KIDINS220:p.N851S,KIT:p.W557G,KLHDC2:p.W321S,KRAS:p.A146T,KRAS:p.Q61H,KRAS:p.Q61L,KRAS:p.G12A,KRAS:p.G12R,KRBA1:p.R839G,KRTAP4−8:p.T63S,L2HGDH:p.P441del,LAMC3:p.P174Q,LHCGR:p.L16Q,LOC401296:p.L144M,LPHN2:p.F906I,LRP12:p.G310C,LTB4R:p.F73L,LTBP3:p.L35del,LUC7L3:p.S148T,LYPD4:p.T64K,MAMLD1:p.Q572L,MAP4K2:p.R341G,MAPK7:p.A501D,MAT2A:p.E166G,MED12L:p.C1292Y,MESP2:p.Q182E,MEX3C:p.R534S,MIER2:p.L131F,MLL5:p.Y66C,MLLT3:p.177_178SS>S,MMS19:p.D1005N,MRPS25:p.E119del,MSH6:p.D576A,MTIF3:p.G65E,MUC17:p.M1807T,MUC17:p.T2279N,MUC17:p.G2474S,MUC2:p.TTPSPP1475del,MUC2:p.T1568M,MUC2:p.T1580N,MUC2:p.T1704I,MUC2:p.T1706M,MUC4:p.H1117D,MUC5B:p.R1097H,MYEF2:p.K323E,MYEOV:p.L302H,MYH8:p.A785V,MYO1A:p.N584K,NAP1L3:p.P353R,NAV1:p.I1433M,NCAM1:p.E131G,NEB:p.D3107N,NEFH:p.V670E,NELL2:p.G170D,NHS:p.D1561N,NKD2:p.H447del,NSD1:p.T461R,NT5C3:p.A3P,NYAP1:p.P480S,OBSCN:p.A908T,OR10J1:p.R244Q,OR1S2:p.M298I,OR2L3:p.K294R,OR6K6:p.F311L,PABPC3:p.V325fs,PBX2:p.Y262F,PCDHB4:p.P255F,PCMTD1:p.V281A,PCP4L1:p.K64R,PDE3A:p.A98E,PDIA6:p.N56K,PDS5A:p.L1309F,PHLDA2:p.R28S,PIGR:p.V183G,PIK3CA:p.E545K,PIK3CD:p.C381R,PKD1:p.T938M,PLEKHM1:p.A895V,PLEKHN1:p.A600D,PLXND1:p.R367L,PMS2:p.K651R,PNMA3:p.E200G,POTEF:p.S112G,PRAMEF8:p.I448V,PRDM2:p.E278D,PRODH:p.L527V,PRPF31:p.R289W,PSME4:p.N495D,PTGR1:p.E40A,PTPRB:p.Q726H,RABGEF1:p.N207D,RAC1:p.P34R,RANBP17:p.M900I,REV3L:p.A30S,RFC3:p.I82N,RFC3:p.K296N,RIMBP3:p.Q1154R,RPL19:p.R151C,RPL5:p.R58fs,RPTN:p.M538I,RRAD:p.A278E,RYR1:p.D668Y,RYR2:p.L2023F,SAFB:p.G799V,SCRIB:p.G332V,SDK1:p.Y2146C,SEC16A:p.T443K,SEC31B:p.P905S,SELO:p.R565Q,SELP:p.A297T,SI:p.I1681K,SLC2A7:p.H268Q,SLC37A1:p.V528I,SLC38A1:p.G100R,SMARCA2:p.D1158A,SMARCA5:p.T156fs,SMC3:p.E970Q,SMG1:p.P2696H,SNRNP200:p.A2129G,SPIN2B:p.M150V,ST6GALNAC1:p.S354N,STAMBPL1:p.Y143H,STARD8:p.G662A,STON1−GTF2A1L:p.N451S,SYMPK:p.A336G,TAS2R8:p.W98C,TCHH:p.W1016R,TET1:p.T1472S,TIAM1:p.G247M,TNS1:p.P183S,TOR1AIP2:p.G146R,TPRX1:p.S216P,TPRX1:p.S200P,TRMT61A:p.S244I,TSPAN4:p.L92V,TTF1:p.Q530R,UBE2M:p.G131D,UBR5:p.R2517S,UGT2B11:p.R447I,UMODL1:p.M559I,UNC93A:p.V445A,USP46:p.Q137R,VWA2:p.G317D,VWA7:p.V792G,WASH3P:p.L187V,WNT5B:p.K327E,WRN:p.E510D,XDH:p.P410S,ZAN:p.S755P,ZC3H11A:p.I777T,ZC3H7A:p.C575S,ZDHHC11:p.H250Q,ZFHX4:p.D3239N,ZKSCAN3:p.K200A,ZMYM4:p.T367I,ZNF174:p.P353T,ZNF322:p.Y353C,ZNF592:p.K324Q,ZNF592:p.P500T,ZNF782:p.C145F,ZNF799:p.C453R,ZNF804B:p.P644S,及びZNRF3:p.R889Wからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、BRAF:p.V600E,NRAS:p.Q61R,HRAS:p.Q61R,NRAS:p.Q61K,OTUD4:p.T909I,HRAS:p.Q61K,NLRP6:p.E611G,AKT1:p.E17K,ANKMY1:p.N302I,ATP6V1A:p.L237P,CYP19A1:p.S113I,DCUN1D4:p.L275P,DGCR8:p.E518K,DLC1:p.S741T,DNAH10:p.C1853F,EIF1AX:p.G9D,FAM75D5:p.L222P,FCGRT:p.P40A,KRAS:p.Q61K,LMX1B:p.Q285del,MAS1L:p.R324G,MED15:p.S35I,MEGF6:p.Y393C,ODZ2:p.A1529V,OR5L1:p.R122H,OR6K6:p.F311L,OTX1:p.D315N,POTEE:p.S75G,SCN5A:p.D1978H,TOP2A:p.K1199E,及びTSG101:p.K265Rからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、TP53:p.R248Q,ZNF814:p.D404E,BTN2A3P:p.P3S,FBXW7:p.R465C,FRG1B:p.G65E,MUC4:p.H4205Q,NBPF10:p.V99F,PIK3CA:p.E545K,PIK3CA:p.H1047R,PPP2R1A:p.P179R,DDX11L2:p.*128Q,FBXW7:p.R479Q,FRG1B:p.K13N,FRG1B:p.L52S,HSD17B7P2:p.N175S,KRAS:p.G12V,LOC283788:p.S37G,TP53:p.R273H,TP53:p.S241Y,ADAMTS12:p.E359K,BCL2L11:p.L187fs,CDC27:p.L460fs,CHEK2:p.K373E,ESPNP:p.W122fs,FBXW7:p.R689W,FBXW7:p.R505G,FBXW7:p.R465H,FCGBP:p.V4019M,FRG1B:p.I10T,FRG1B:p.D32V,FRG1B:p.R37K,KRAS:p.G12D,LOC100233156:p.R21C,LOC283788:p.I46M,LRP1B:p.L1392F,MAMLD1:p.Q572L,MST1P9:p.L319P,MUC4:p.A2390T,MUC4:p.G2172S,NBPF10:p.E3455K,PIK3CA:p.G106V,PODXL:p.28_30PSP>P,POTEC:p.R477Q,PPP2R1A:p.R183W,PPP2R1A:p.S219L,PTPN18:p.TG378del,RGPD3:p.N756D,RPL13AP20:p.G107R,SAMD4B:p.R477W,SMAP1:p.E169fs,TP53:p.H193R,TP53:p.H179R,TP53:p.R175H,TUBBP5:p.R119H,及びU2AF1:p.S34Fからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(b)上記少なくとも1つの腫瘍特異的突然変異は、RBM14:p.AAAAAAA286del,KRAS:p.G12D,JMY:p.PPPPPPPPPPPP811del,RIOK1:p.D69del,LCE2A:p.SSGGCCGSSSGGCC47del,KRAS:p.G12V,C1QB:p.GPKGPMGPKGGPGAPGAP90del,ZFHX3:p.V777del,DBR1:p.541_542DD>D,AEBP1:p.K1133del,KRAS:p.G12R,RBM47:p.495_502AAAAAAAA>A,AP3S1:p.K41fs,MLL2:p.AEGPHLSPQPEELHLSPQ792del,RFX1:p.386_401GGGGGGGGGGGGGGSG>G,AXDND1:p.EQ991del,HERC2P3:p.A803V,RGPD3:p.N756D,FNDC1:p.D1180del,ANAPC1:p.T537A,IRS4:p.21_22AA>A,GIGYF2:p.Q1005del,NCOA3:p.Q1253fs,SIK3:p.950_951QQ>Q,GPR6:p.AAAAATAAGGPDTGEWGPPA36del,NBPF12:p.D1323fs,SHROOM4:p.1156_1157EE>E,ZMIZ2:p.VAAAAATATATATAT153del,DGKK:p.PAPP41del,LZTS1:p.RTQDLEGALRTKGLEL432del,CASQ2:p.395_396DD>D,DCP1B:p.251_252insH,ESPNP:p.296_317PPPPSFPPPPPPPGTQLPPPPP>P,KBTBD6:p.T403K,NBPF16:p.D449fs,ANKRD36C:p.H438R,ESPN:p.PPPPPPSFPPPPPPPGTQLPP430del,FCGBP:p.A2493V,KRAS:p.Q61H,NCOA3:p.Q1276del,OR2T2:p.C203fs,TMCC1:p.Q565L,BCKDHA:p.G129fs,ESPNP:p.H64fs,GNAS:p.R844H,NBPF14:p.R25C,OGFOD1:p.G477fs,RBM12:p.P693S,SLC38A10:p.1071_1072II>I,SORBS2:p.P866S,TP53:p.R248W,TP53:p.R175H,及びUBAC1:p.E269delからなる群から選択される突然変異の任意の組み合わせを含む、
段落30〜36のいずれか一つに記載の医薬組成物。
(a)それを必要としている患者のために抗癌剤を選択することであり、上記薬物を、イブルチニブ、エルロチニブ、イマチニブ、ゲフィチニブ、クリゾチニブ、トラスツズマブ、ベムラフェニブ、RAF/MEK阻害剤及び抗エストロゲン療法からなる群から選択する、選択すること、並びに
(b)段落30〜103のいずれか一つに記載の医薬組成物を上記対象に予防的に投与することであり、上記少なくとも1つのネオ抗原ペプチドは、上記選択した抗癌剤と関連する薬物耐性突然変異に由来する、投与すること
を含む方法。
・ 腫瘍中にDNAレベルで存在するが、癌を有する対象の高い割合からの対応する生殖細胞系試料中には存在しない新生物/腫瘍における突然変異を同定すること;
・ 新生物/腫瘍内で発現され、且つ患者のHLA対立遺伝子の高い割合に結合する複数のネオ抗原T細胞エピトープを生成するために、1つ以上のペプチド−MHC結合予測アルゴリズムにより、同定された突然変異を分析すること;及び
・ 癌を有する対象の高い割合の処置に適した癌ワクチン又は免疫原性組成物で使用するために、全てのネオ抗原ペプチド及び予測結合ペプチドのセットから選択された複数のネオ抗原ペプチドを合成すること。
(1)高い割合の個体のHLA分子に結合することができる突然変異ペプチドの予測。どの特定の突然変異を免疫原として利用するべきかを効率的に選択するには、どの突然変異ペプチドが高い割合の患者のHLA対立遺伝子に効率的に結合し得るかを予測する能力が必要である。近年、バリデートされた結合及び非結合ペプチドによるニューラルネットワークベースの学習手法によって、主要なHLA−A及び−B対立遺伝子に関する予測アルゴリズムの精度が進歩している。
(2)薬物をロングペプチドのマルチエピトープワクチンとして製剤化すること。現実に可能な限り多くの突然変異エピトープを標的にすることにより、免疫系の多大な能力が活用され、特定の免疫標的化遺伝子産物の下方制御による免疫エスケープの機会が阻止され、及びエピトープ予測手法の既知の不正確さが補償される。合成ペプチドは、複数の免疫原を効率的に調製し且つ突然変異体エピトープの同定を有効なワクチンに迅速に変えるための特に有用な手段を提供する。ペプチドは夾雑細菌又は動物性物質を含有しない試薬を利用して容易に化学的に合成し、簡単に精製することができる。サイズが小さいため、タンパク質の突然変異領域に明確に焦点を合わせることが可能であり、また、他の成分(非突然変異タンパク質又はウイルスベクター抗原)からの無関係な抗原競合も低下する。
(3)強力なワクチンアジュバントとの併用。有効なワクチンには、免疫応答を惹起する強力なアジュバントが必要である。以下に記載するとおり、TLR3アゴニスト並びにMDA5及びRIG3のRNAヘリカーゼドメインであるポリICLCが、ワクチンアジュバントに望ましい幾つかの特性を示している。それらの特性には、インビボでの免疫細胞の局所及び全身活性化の誘導、刺激ケモカイン及びサイトカインの産生、並びにDCによる抗原提示の刺激が含まれる。さらに、ポリICLCは、ヒトにおいて持続的なCD4+及びCD8+応答を誘導することができる。重要なことに、ポリICLCを伴いワクチン接種した対象と、極めて有効性の高い複製コンピテント黄熱病ワクチンの投与を受けたことがあるボランティアとにおいて、転写経路及びシグナル伝達経路の上方調節の点で顕著な類似性が認められた。さらに、最近の第1相研究では、(Montanideに加えて)NYES0−1ペプチドワクチンと組み合わせてポリICLCで免疫した卵巣癌患者の90%超がCD4+及びCD8+ T細胞の誘導並びにペプチドに対する抗体反応を示した。同時に、ポリICLCは現在までに25件を上回る臨床試験で広範に試験されており、比較的安全な毒性プロファイルを呈している。上述の本発明の利点は本明細書にさらに記載される。
本発明は、少なくとも一部には、患者の免疫系に腫瘍特異的ネオ抗原のプールを提示する能力に基づく。当業者は、本開示及び当該技術分野における知識から、かかる腫瘍特異的ネオ抗原を作製する種々の方法があることを理解するであろう。一般に、かかる腫瘍特異的ネオ抗原は、インビトロ又はインビボのいずれでも作製し得る。腫瘍特異的ネオ抗原はインビトロでペプチド又はポリペプチドとして作製されてもよく、次にそれが新生物ワクチン又は免疫原性組成物に製剤化され、対象に投与されてもよい。本明細書にさらに詳細に記載するとおり、かかるインビトロ作製は、例えば、種々の細菌、真核生物、又はウイルス組換え発現系のいずれかにおけるDNA又はRNA分子からのペプチド/ポリペプチドのペプチド合成又は発現と、続く発現したペプチド/ポリペプチドの精製など、当業者に公知の種々の方法によって行われ得る。或いは、腫瘍特異的ネオ抗原は、腫瘍特異的ネオ抗原をコードする分子(例えば、DNA、RNA、ウイルス発現系など)を対象に導入し、導入後にコードされた腫瘍特異的ネオ抗原が発現することによりインビボで作製されてもよい。ネオ抗原のインビトロ及びインビボ作製方法はまた、本明細書において、それが医薬組成物及び治療の送達方法に関するときさらに記載される。
タンパク質又はペプチドは、標準的な分子生物学的技法によるタンパク質、ポリペプチド又はペプチドの発現、天然供給源からのタンパク質又はペプチドの単離、インビトロ翻訳、又はタンパク質又はペプチドの化学合成を含め、当業者に公知の任意の技法によって作製することができる。様々な遺伝子に対応するヌクレオチド及びタンパク質、ポリペプチド及びペプチド配列は既に開示されており、当業者に公知のコンピュータ化されたデータベースを参照することができる。一つのかかるデータベースは、国立衛生研究所(National Institutes of Health)ウェブサイトにある国立バイオテクノロジー情報センター(National Center for Biotechnology Information)のGenbank及びGenPeptデータベースである。既知の遺伝子のコード領域は、本明細書に開示される技法を用いて、又は当業者に公知であろうとおりに増幅し及び/又は発現させることができる。或いは、様々な市販のタンパク質、ポリペプチド及びペプチド調製物が当業者に公知である。
本発明はまた、ネオ抗原ペプチド/ポリペプチドをそれを必要としている対象に例えばDNA/RNAワクチンの形態でインビボで送達するための媒体としての核酸分子の使用も企図する(例えば、本明細書によって全体として参照により援用される国際公開第2012/159643号パンフレット、及び国際公開第2012/159754号パンフレットを参照)。
・米国特許第4,603,112号明細書、同第4,769,330号明細書、同第5,110,587号明細書、同第5,174,993号明細書、同第5,364,773号明細書、同第5,762,938号明細書、同第5,494,807号明細書、同第5,766,597号明細書、同第7,767,449号明細書、同第6,780,407号明細書、同第6,537,594号明細書、同第6,265,189号明細書、同第6,214,353号明細書、同第6,130,066号明細書、同第6,004,777号明細書、同第5,990,091号明細書、同第5,942,235号明細書、同第5,833,975,5号明細書、同第766,597号明細書、同第5,756,101号明細書、同第7,045,313号明細書、同第6,780,417号明細書、同第8,470,598号明細書、同第8,372,622号明細書、同第8,268,329号明細書、同第8,268,325号明細書、同第8,236,560号明細書、同第8,163,293号明細書、同第7,964,398号明細書、同第7,964,396号明細書、同第7,964,395号明細書、同第7,939,086号明細書、同第7,923,017号明細書、同第7,897,156号明細書、同第7,892,533号明細書、同第7,628,980号明細書、同第7,459,270号明細書、同第7,445,924号明細書、同第7,384,644号明細書、同第7,335,364号明細書、同第7,189,536号明細書、同第7,097,842号明細書、同第6,913,752号明細書、同第6,761,893号明細書、同第6,682,743号明細書、同第5,770,212号明細書、同第5,766,882号明細書、及び同第5,989,562号明細書、及び
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(この各々が参照により本明細書に援用される)。
有効なワクチン又は免疫原性組成物は、有利には、免疫応答を惹起するため強力なアジュバントを含む。本明細書に記載されるとおり、TLR3アゴニスト並びにMDA5及びRIG3のRNAヘリカーゼドメインであるポリICLCが、ワクチン又は免疫原性組成物アジュバントに望ましい幾つかの特性を示している。それらの特性には、インビボでの免疫細胞の局所及び全身活性化の誘導、刺激ケモカイン及びサイトカインの産生、並びにDCによる抗原提示の刺激が含まれる。さらに、ポリICLCは、ヒトにおいて持続的なCD4+及びCD8+応答を誘導することができる。重要なことに、ポリICLCをワクチン接種した対象と、極めて有効性の高い複製コンピテント黄熱病ワクチンの投与を受けたことがあるボランティアとにおいて、転写経路及びシグナル伝達経路の上方調節の点で顕著な類似性が認められた。さらに、最近の第1相研究では、(Montanideに加えて)NY−ESO−1ペプチドワクチンと組み合わせてポリICLCで免疫した卵巣癌患者の90%超がCD4+及びCD8+ T細胞の誘導並びにペプチドに対する抗体反応を示した。同時に、ポリICLCは現在までに25件を上回る臨床試験で広範に試験されており、比較的安全な毒性プロファイルを呈している。強力且つ特異的な免疫原に加え、ネオ抗原ペプチドはアジュバント(例えばポリICLC)又は別の抗新生物剤と併用し得る。理論によって拘束されるものではないが、これらのネオ抗原は中枢性胸腺トレランスを回避し(従ってより強力な抗腫瘍T細胞応答が可能となる)、一方で自己免疫の可能性を(例えば、正常な自己抗原の標的化を回避することにより)低下させるものと予想される。有効な免疫応答は、有利には免疫系を活性化させるため強力なアジュバントを含む(Speiser and Romero,「癌免疫療法のための分子的に定義されたワクチン、及び防御T細胞免疫(Molecularly defined vaccines for cancer immunotherapy,and protective T cell immunity)」 Seminars in Immunol 22:144(2010))。例えば、Toll様受容体(TLR)が、自然免疫系、次には適応免疫系を有効に誘導する、微生物性及びウイルス性病原体「危険シグナル」の強力なセンサーとして登場している(Bhardwaj and Gnjatic,「TLRアゴニスト:それは優れたアジュバントか?(TLR AGONISTS:Are They Good Adjuvants?)」 Cancer J.16:382−391(2010))。TLRアゴニストの中でも、ポリICLC(合成二本鎖RNA模倣体)は、骨髄由来樹状細胞の最も強力なアクチベータの一つである。ヒトボランティア試験において、ポリICLCは安全で、且つ末梢血細胞において、最も強力な弱毒生ウイルスワクチンの一つである黄熱病ワクチンYF−17Dによって誘導されるものと同等の遺伝子発現プロファイルを誘導することが示されている(Caskey et al,「合成二本鎖RNAはヒトにおいて生菌ウイルスワクチンと同様の自然免疫応答を誘導する(Synthetic double−stranded RNA induces innate immune responses similar to a live viral vaccine in humans)」 J Exp Med 208:2357(2011))。好ましい実施形態において、Oncovir,Incにより調製されるポリICLCのGMP製剤であるHiltonol(登録商標)がアジュバントとして利用される。他の実施形態では、本明細書に記載される他のアジュバントが想定される。例えば、水中油、油中水又は多相W/O/W;例えば、米国特許第7,608,279号明細書及びAucouturier et al,Vaccine 19(2001),2666−2672、及びそれらの引用文献を参照のこと。
本明細書の治療によって治療し得る癌及び癌病態の例としては、限定はされないが、癌である、又は癌の発症リスクがあると診断された、それを必要としている患者が挙げられる。対象は、固形腫瘍、例えば、乳房、卵巣、前立腺、肺、腎臓、胃、結腸、精巣、頭頸部、膵臓、脳、メラノーマ、及び他の組織臓器腫瘍、並びに血液腫瘍、例えば、急性骨髄性白血病、慢性骨髄性白血病、慢性リンパ性白血病、T細胞リンパ性白血病、及びB細胞リンパ腫を含めたリンパ腫及び白血病、脳及び中枢神経系の腫瘍(例えば、髄膜、脳、脊髄、脳神経及び他のCNS部位の腫瘍、例えば、膠芽腫又は髄芽細胞腫);頭部及び/又は頸部癌、乳房腫瘍、循環系の腫瘍(例えば、心臓、縦隔及び胸膜、及び他の胸腔内臓器、血管腫瘍、及び腫瘍関連血管組織);血液及びリンパ系の腫瘍(例えば、ホジキン病、非ホジキン病リンパ腫、バーキットリンパ腫、AIDS関連リンパ腫、悪性免疫増殖性疾患、多発性骨髄腫、及び悪性形質細胞新生物、リンパ性白血病、骨髄性白血病、急性又は慢性リンパ性白血病、単球性白血病、特定の細胞型の他の白血病、不特定細胞型の白血病、リンパ組織、造血組織及び関連組織の不特定の悪性新生物、例えばびまん性大細胞型リンパ腫、T細胞リンパ腫又は皮膚T細胞リンパ腫);排泄系(例えば、腎臓、腎盂、尿管、膀胱、及び他の泌尿器)の腫瘍;胃腸管(例えば、食道、胃、小腸、結腸、結腸直腸、直腸S状結腸移行部、直腸、肛門、及び肛門管)の腫瘍;肝臓及び肝内胆管、胆嚢、及び他の胆道部位、膵臓、及び他の消化器に関わる腫瘍;口腔(例えば、口唇、舌、歯肉、口腔底、口蓋、耳下腺、唾液腺、扁桃腺、中咽頭、鼻咽頭、梨状窩(puriform sinus)、下咽頭、及び他の口腔部位)の腫瘍;生殖器系(例えば、外陰部、腟、子宮頸、子宮、卵巣、及び他の女性生殖器関連部位、胎盤、陰茎、前立腺、精巣、及び他の男性生殖器関連部位)の腫瘍;気道(例えば、鼻腔、中耳、副鼻腔、喉頭、気管、気管支及び肺、例えば小細胞肺癌及び非小細胞肺癌)の腫瘍;骨格系(例えば、体肢、骨関節軟骨及び他の部位の骨及び関節軟骨)の腫瘍;皮膚の腫瘍(例えば、皮膚悪性メラノーマ、非メラノーマ皮膚癌、皮膚基底細胞癌、皮膚扁平上皮癌、中皮腫、カポジ肉腫);及び末梢神経及び自律神経系を含む他の組織、結合組織及び軟部組織、後腹膜(retroperitoneoum)及び腹膜、眼、甲状腺、副腎、並びに他の内分泌腺及び関連構造が関わる腫瘍、リンパ節の二次性及び不特定悪性新生物、呼吸器系及び消化器系の二次性悪性新生物及び他の部位の二次性悪性新生物を有し得る。そのため、本明細書に記載されている対象の集団は、上記の癌のタイプのうちの1つに罹患し得る。他の実施形態において、この対象の集団は、全ての対象が固形腫瘍に罹患していてもよいし、全ての対象が液性腫瘍に罹患していてもよい。
本発明はまた、本明細書に記載される1つ以上のネオ抗原ペプチド(その薬学的に許容可能な塩を含む)の有効量を、場合により薬学的に許容可能な担体、賦形剤又は添加剤との組み合わせで含む医薬組成物にも関する。
本明細書に記載される薬剤が医薬品としてヒト又は動物に投与されるとき、それらはそれ自体で投与することも、又は薬学的に許容可能な担体、賦形剤、若しくは希釈剤と組み合わせた活性成分を含有する医薬組成物として投与することもできる。
本発明は、いくつかの態様において、癌の予防又は処置に適した医薬組成物に関する。一実施形態において、本組成物は、少なくとも免疫原性組成物、例えば特定のT細胞応答を上昇させることができる新生物ワクチン又は免疫原性組成物を含む。新生物ワクチン又は免疫原性組成物は、本明細書に記載される腫瘍特異的ネオ抗原に対応するネオ抗原ペプチド及び/又はネオ抗原ポリペプチドを含む。
本発明は、本発明の複数のネオ抗原ペプチド若しくは組成物を対象に投与することによって、対象において新生物/腫瘍特異的免疫応答を誘導する方法、新生物/腫瘍に対するワクチンを接種する方法、対象における癌の症状を治療及び/又は軽減する方法を提供する。
本明細書に記載されている腫瘍特異的ネオ抗原ペプチド及び医薬組成物を、別の薬剤(例えば治療薬)との併用療法で投与することもできる。特定の実施形態において、この追加の薬剤は化学療法剤、抗血管新生剤、及び免疫抑制を低下させる薬剤であり得るが、これらに限定されない。
別の態様では、本明細書に記載されている療法は、それを必要としている患者のために処置される癌の標準治療に関する及びこの標準治療内の併用療法を投与するための適切なポイントを選択することを提供する。本明細書に記載されている研究は、この併用療法が、手術、放射線照射又は化学療法を含む標準治療内であっても効果的に投与され得ることを示す。最も一般的な癌の標準治療を、National Cancer Instituteのウェブサイト(www.cancer.gov/cancertopics)で見ることができる。この標準治療は、特定のタイプの疾患に対する適切な処置として医療専門家により受け入れられており且つ医療従事者により広く使用されている現在の処置である。標準治療はまた、ベストプラクティス、標準的医療及び標準療法とも呼ばれる。癌の標準治療として、一般には、手術、リンパ節切除、放射線照射、化学療法、標的療法、腫瘍を標的とする抗体、及び免疫療法が挙げられる。免疫療法として、チェックポイントブロッカー(CBP)、キメラ抗体受容体(CAR)、及び養子T細胞療法を挙げることができる。本明細書に記載されている併用療法を標準治療に組み込むことができる。本明細書に記載されている併用療法は、医療の進歩により標準治療が変更された場合にも投与され得る。
1.タモキシフェンを伴う又は伴わない乳房温存手術及び放射線療法。
2.タモキシフェンを伴う又は伴わない全乳房切除術。
3.放射線療法を伴わない乳房温存手術。
1.局所的−局部的処置:
・ 乳房温存療法(腫瘤摘出術、乳房放射線照射、及び腋窩の外科的病期判定)。
・ 乳房再建術を伴う又は伴わない非定型的乳房切除術(レベル1〜IIの腋窩郭清を伴う全乳房の除去)。
・ センチネルリンパ節生検。
2.腋窩リンパ節陽性腫瘍における乳房切除術後のアジュバント放射線療法:
・ 1〜3つのリンパ節の場合:局部放射線(鎖骨下/鎖骨上のリンパ節、内胸リンパ節、腋窩リンパ節、及び胸壁)の不明な役割。
・ 4つ超のリンパ節又は節外性病変の場合:局部的放射線療法が推奨される。
3.アジュバント全身療法。
1.治癒目的で投与される集学的治療が、臨床ステージIIIBの疾患の患者に対する標準治療である。
2.初期の手術は概して、組織診断、エストロゲン受容体(ER)及びプロゲステロン受容体(PR)レベル、並びにヒト上皮成長因子受容体2(HER2/neu)の過剰発現の決定を可能にする生検に限定される。アントラサイクリンをベースとする化学療法及び/又はタキサンをベースとする療法による初期の処置が標準である。ネオアジュバント化学療法に応答する患者の場合、局所療法は、腋窩リンパ節郭清を伴う全乳房切除術と、それに続く胸壁及び局部リンパ管に対する術後放射線療法とからなり得る。ネオアジュバント化学療法に対して良好な部分寛解又は完全寛解を得る患者では、乳房温存手術を検討することができる。その後の全身療法は、さらなる化学療法からなり得る。腫瘍がER陽性又は不明である患者に対しては、ホルモン療法を投与するべきである。全ての患者を、集学的レジメン(multimodality regimen)の様々な構成要素を投与する最適な様式を評価するための臨床試験の候補と見なすべきである。
1.無症候性の又は罹患が最小限である患者における観察
2.リツキシマブ
3.オファツムマブ(ofatumomab)
4.コルチコステロイドを伴う又は伴わない経口アルキル化剤
5.フルダラビン、2−クロロデオキシアデノシン又はペントスタチン
6.ベンダムスチン
7.レナリドマイド
8.併用化学療法。
併用化学療法レジメンには下記が含まれる:
− フルダラビン+シクロホスファミド+リツキシマブ。
− CLB−9721及びCLB−9011試験で見られるようなフルダラビン+リツキシマブ。
− フルダラビン+シクロホスファミド対フルダラビン+シクロホスファミド+リツキシマブ。
− 例えばMAYO−MC0183試験で見られるようなペントスタチン+シクロホスファミド+リツキシマブ。
− オファツムマブ+フルダラビン+シクロホスファミド。
− CVP:シクロホスファミド+ビンクリスチン+プレドニゾン。
− CHOP:シクロホスファミド+ドキソルビシン+ビンクリスチン+プレドニゾン。
− 例えばE2997試験[NCT00003764]及びLRF−CLL4試験で見られるようなフルダラビン+シクロホスファミド対フルダラビン。
− 例えばCLB−9011試験で見られるようなフルダラビン+クロラムブシル。
9.浸潤領域への放射線療法。
10.アレムツズマブ
11.骨髄及び末梢血幹細胞移植は臨床評価中である。
12.イブルチニブ。
本発明の態様は、腫瘍関連抗原等の選択された抗原に特異的な免疫系細胞(例えばT細胞)の養子移入を含む(Maus et al.,2014,「癌又はウイルスに対する養子免疫療法(Adoptive Immunotherapy for Cancer or Viruses)」,AnnualReview of Immunology,Vol.32:189−225;Rosenberg and Restifo,2015,「ヒト癌のための個別化された免疫療法としての養子細胞移入(Adoptive cell transfer as personalized immunotherapy for human cancer)」,Science Vol.348 no.6230 pp.62−68;Restifo et al.,2015,「癌のための養子免疫療法:T細胞応答を利用する(Adoptive immunotherapy for cancer:harnessing the T cell response)」.Nat.Rev.Immunol.12(4):269−281;及びJenson and Riddell,2014,「キメラ抗原受容体−改変T細胞による養子療法の設計及び実施(Design and implementation of adoptive therapy with chimeric antigen receptor−modified T cells)」.Immunol Rev.257(1):127−144を参照されたい)。例えば、様々な戦略を利用して、例えば選択されたペプチド特異性を有する新規のTCRα及びβ鎖を導入することによってT細胞受容体(TCR)の特異性を変化させることにより、T細胞を遺伝的に改変することができる(米国特許第8,697,854号明細書;国際公開第2003020763号パンフレット、同第2004033685号パンフレット、同第2004044004号パンフレット、同第2005114215号パンフレット、同第2006000830号パンフレット、同第2008038002号パンフレット、同第2008039818号パンフレット、同第2004074322号パンフレット、同第2005113595号パンフレット、同第2006125962号パンフレット、同第2013166321号パンフレット、同第2013039889号パンフレット、同第2014018863号パンフレット、同第2014083173;米国特許第8,088,379号明細書を参照されたい)。
別の態様において、本発明は、本発明の療法から利益を得る可能性が最も高い、それを必要としている患者を選択することを提供する。本発明の組成物及び方法は概して、癌に罹患している対象の高い割合で適用可能であるが、本方法は、利益を得る可能性がある患者を患者集団から選択する1つ以上の工程を更に含むことができる。例えば、本方法は、本組成物中のネオ抗原ペプチドで表される突然変異のうちの1つ以上を腫瘍が含む対象を選択することを含むことができる。別の実施形態において、本方法は、本組成物中のネオ抗原ペプチドで表される1つ以上のネオエピトープに結合する少なくとも1つのHLA対立遺伝子を有する対象を選択することを含むことができる。
ある態様において、本発明は、治療の投与を可能にするため本明細書で考察される要素の任意の1つ以上を含むキットを提供する。要素は、個々に又は組み合わせで提供されてもよく、及び任意の好適な容器、例えば、バイアル、ボトル、又はチューブに提供されてもよい。一部の実施形態において、キットは、1つ以上の言語、例えば2つ以上の言語による説明書を含む。一部の実施形態において、キットは、本明細書に記載される要素の1つ以上を利用するプロセスで使用される1つ以上の試薬を含む。試薬は任意の好適な容器中に提供されてもよい。例えば、キットは1つ以上の送達又は保存緩衝液を提供し得る。試薬は、特定のプロセスで使用可能な形態で提供されてもよく、又は使用前に1つ以上の他の構成成分の添加が必要な形態(例えば濃縮形態又は凍結乾燥形態)で提供されてもよい。緩衝液は、限定はされないが、炭酸ナトリウム緩衝液、重炭酸ナトリウム緩衝液、ホウ酸塩緩衝液、トリス緩衝液、MOPS緩衝液、HEPES緩衝液、及びそれらの組み合わせを含めた任意の緩衝液であり得る。一部の実施形態において、緩衝液はアルカリ性である。一部の実施形態において、緩衝液は約7〜約10のpHを有する。一部の実施形態において、キットは、本明細書に記載されるベクター、タンパク質の1つ以上及び/又はポリヌクレオチドの1つ以上を含む。キットは、有利には、本発明のシステムの全ての要素の提供を可能にし得る。キットは、動物、哺乳動物、霊長類、げっ歯類等に投与される1〜50個又はそれ以上のネオ抗原突然変異のRNAを含むか又はそれをコードするベクター及び/又は粒子及び/又はナノ粒子を含むことができ、そのようなキットは、そのような真核生物に対する投与についての説明書を含み、そのようなキットは、本明細書に記載されている抗癌剤のいずれかを任意選択で含むことができる。このキットは、上記の成分(例えば、1〜50個若しくはそれ以上のネオ抗原突然変異のRNAを含むか若しくはそれをコードするベクター及び/若しくは粒子及び/若しくはナノ粒子、ネオ抗原タンパク質、又はペプチド)のいずれかと、本発明の方法のいずれかと使用するための説明書とを含むことができる。
sPDL1は、様々なHLA対立遺伝子にわたって免疫原性エピトープを生成する。PDL1(CD274)は、T細胞上のPD1(CD279;PDCD1)と相互作用する及び(例えば妊娠中の)天然の免疫抑制の複数の形態に関与し得る膜貫通タンパク質である。PDL1の発現は、宿主の免疫応答を回避するための方法として腫瘍細胞にも利用される。sPDL1は、PDL1遺伝子の選択的スプライシング形態である。この選択的スプライシング形態はエクソン4の末端でのスプライシングの欠如により生じており、4番目のイントロンに読み込まれる。転写産物はイントロン4内で終結する。翻訳産物は、停止コドンに遭遇する前の18個のアミノ酸のフレーム内である。
アンドロゲン受容体は、様々なHLA対立遺伝子にわたり免疫原性エピトープを生成する。このアンドロゲン受容体を、腫瘍細胞中で特異的に発現され得るネオORFを生じるメッセージの別の選択的スプライシング形態として同定した。選択的スプライシングにより、ネオORFである潜在エクソンをもたらす少なくとも2つのアイソフォームが生じる。
薬物耐性突然変異。様々な化学療法剤による処置、特にチロシンキナーゼ阻害剤等の標的療法による処置により、この療法の活性に抵抗する標的分子で新たな突然変異が頻繁に起こる。この耐性を克服するための複数の戦略が評価されており、例えば、この突然変異の影響を受けない第2世代の療法の開発及びこの耐性突然変異の下流で作用するもの等の複数の薬剤による処置が評価されている。
ブルトン型チロシンキナーゼ(BTK)を標的とし、且つCLL及び特定のリンパ腫に使用される分子であるイブルチニブに対する非常に一般的な突然変異は、481位置でのシステインからセリンへの変化である。この変化により、様々なHLA分子に結合する多くの結合ペプチドが生じる。
上皮成長因子受容体(EGFR)のチロシンキナーゼドメインを標的とするエルロチニブは、肺癌の処置で一般に使用され、治療後には耐性腫瘍が常に発生する。耐性クローンで見られる共通の突然変異は、790位でのトレオニンからメチオニンへの突然変異である。この変化により、様々なHLA分子に結合する多くの結合ペプチドが生じる(表4)。
本明細書で論じる具体的な耐性症例に加えて、標的療法に対する多くの他の観測された耐性突然変異が存在する。これらをそれぞれ使用して、耐性突然変異を含む細胞を標的とする免疫療法のためのワクチンとして利用される可能性がある免疫原性エピトープも定義する(表5)。
癌のサブタイプに特異的な免疫原性組成物。表7は、癌のサブタイプに特異的な試料の集団内に見られる突然変異の数に関するデータの概要を示す。各疾患に関するデータセット内で見られる各突然変異により、3つの民族集団(白人、黒人、アジア人)のいずれか1つの少なくとも5%で見られることに基づいて選択された33のHLA対立遺伝子のうちのいずれか1つに対して少なくとも1つの予測結合体が得られる。これらの突然変異により生じるポリペプチドに由来するネオ抗原ペプチドの組み合わせを、免疫原性組成物で使用することができる。選択された突然変異由来のペプチドの数に基づいて、患者のより大きな割合がワクチンから利益を得ることができる。表7は、各癌に特異的なデータセットにおいて反復性である突然変異の数を示す。反復突然変異を選択する場合に少なくとも単一の突然変異を有するであろう各データセット中の患者の割合も示されている。例えば、本明細書に記載されている64の反復突然変異に由来するネオ抗原ペプチドを含むSKCM用の免疫原性組成物は、この集団中の患者の90.91%をカバーし、各対象は、複数のネオ抗原突然変異のうちの少なくとも1つを含む。
癌のサブタイプに特異的な免疫原性組成物のための反復突然変異。Cancer Genome Atlas(TCGA)には、腫瘍試料から癌に関与する遺伝子突然変異のカタログまでの包括的な大規模ゲノムシーケンシングデータが含まれる。免疫原性組成物で使用するための腫瘍特異的ネオ抗原ペプチドを、多くの基準に基づいて選択するとこができる。第1の基準は遺伝子発現に基づく。100万当たり>10の転写産物で遺伝子を発現する(腫瘍タイプ毎の)患者の割合を決定した。推定値は、(腫瘍タイプ毎の)HLAタイプのランダムな分類対各遺伝子の突然変異状態対遺伝子発現を想定している。国家的な年間発生率を使用して、各ペプチドで処置することができる集団を定量化した。ペプチドを、予想される集団によりランク付けした。分析の結果を表9に示す。
細胞外ドメインを含む遺伝子で発現される反復突然変異の治療ターゲティング。癌患者の集団の1%超に存在する腫瘍特異的突然変異は、この突然変異から生じる腫瘍特異的ネオエピトープを認識する薬剤又は療法の標的にされ得る。この突然変異は好ましく細胞外ドメイン内である。この薬物又は療法は、抗体、抗体断片、抗体薬物コンジュゲート、アプタマー、CAR又はT細胞受容体である。抗体又はその断片は、ヒト化されていてもよいし、完全にヒト化されていてもよいし、キメラであってもよい。抗体断片は、ナノボディ、Fab、Fab’、(Fab’)2、Fv、ScFv、二重特異性抗体、三重特異性抗体、四重特異性抗体、Bis−scFv、ミニボディ、Fab2又はFab3断片であることができる。
Claims (93)
- 少なくとも1つのネオ抗原ペプチドと、薬学的に許容可能な担体とを含む医薬組成物であって、少なくとも1つのネオ抗原ペプチドはそれぞれ、対象のHLAタンパク質に結合することができる腫瘍特異的ネオエピトープを含み、腫瘍特異的ネオエピトープはそれぞれ、腫瘍中に存在する腫瘍特異的突然変異を含み、
(a)前記組成物は、癌に罹患している対象の集団中の対象の少なくとも1%の腫瘍中に存在する腫瘍特異的突然変異を含む少なくとも1つのネオ抗原ペプチドを含み、
(b)前記組成物は、癌に罹患している対象の集団中の対象の少なくとも5%に存在するHLAタンパク質に結合する腫瘍特異的ネオエピトープを含む少なくとも1つのネオ抗原ペプチドを含み、
(c)前記組成物は、癌に罹患している対象の集団中の対象の少なくとも5%に存在する腫瘍に対して免疫応答を誘発することができる少なくとも1つのネオ抗原ペプチドを含む、
医薬組成物。 - 前記対象の集団は、副腎皮質癌(ACC)、膀胱尿路上皮癌(BLCA)、湿潤性乳癌(BRCA)、子宮頸部扁平上皮癌及び子宮頸管腺癌(CESC)、結腸腺癌(COAD)、慢性リンパ性白血病(CLL)、結腸直腸癌(CRC)、びまん性大細胞型B細胞リンパ腫(DLBCL)、多形性膠芽腫(GBM)、頭頸部扁平上皮癌(HNSC)、腎臓の嫌色素性細胞(KICH)、腎臓の腎明細胞癌(KIRC)、腎臓の腎乳頭状細胞癌(KIRP)、急性骨髄性白血病(LAML)、肝臓の肝細胞癌(LIHC)、肺腺癌(LUAD)、肺扁平上皮癌(LUSC)、多発性骨髄腫(MM)、卵巣の漿液性嚢胞腺癌(OV)、膵臓腺癌(PAAD)、前立腺腺癌(PRAD)、直腸腺癌(READ)、皮膚の皮膚黒色腫(SKCM)、胃腺癌(STAD)、精巣の胚細胞腫瘍(TGCT)、甲状腺腺癌(THCA)、子宮体部内膜癌(UCEC)又は子宮癌肉腫(UCS)に罹患している、請求項1に記載の医薬組成物。
- 前記癌に罹患している集団は、イブルチニブ、エルロチニブ、イマチニブ、ゲフィチニブ、クリゾチニブ、トラスツズマブ、ベムラフェニブ、RAF/MEK阻害剤又は抗エストロゲン療法で処置された、処置されている、又は処置するために選択される、請求項1又は2に記載の医薬組成物。
- 前記腫瘍特異的突然変異は、スプライスバリアント突然変異、点突然変異及び/又はフレームシフト突然変異を含む、請求項1〜3のいずれか一項に記載の医薬組成物。
- 前記少なくとも1つのネオ抗原ペプチドは、前記腫瘍特異的突然変異に隣接する及び前記腫瘍特異的突然変異を含むロングペプチド領域に由来する少なくとも1つのネオ抗原ペプチドを含み、前記ロングペプチド内の全ての隣接セグメントが含まれる、請求項1〜4のいずれか一項に記載の医薬組成物。
- 前記腫瘍特異的突然変異は、いずれかの表で列挙された1つ以上の遺伝子中に存在する、請求項1〜5のいずれか一項に記載の医薬組成物。
- 前記組成物は、いずれかの表で定義された少なくとも1つのネオ抗原ペプチドを含む、請求項1〜6のいずれか一項に記載の医薬組成物。
- 前記腫瘍特異的突然変異は、プログラム死リガンド1(PD−L1)、アンドロゲン受容体(AR)、ブルトン型チロシンキナーゼ(BTK)、上皮成長因子受容体(EGFR)、BCR−Abl、c−kit、PIK3CA、HER2、EML4−ALK、KRAS、ALK、ROS1、AKT1、BRAF、MEK1、MEK2、NRAS、RAC1及びESR1からなる群から選択されるタンパク質をコードする1つ以上の遺伝子中に存在する、請求項1〜7のいずれか一項に記載の医薬組成物。
- 少なくとも1つの腫瘍特異的突然変異はPD−L1又はARの選択的スプライシングに由来する、請求項8に記載の医薬組成物。
- 少なくとも1つの腫瘍特異的突然変異は、スプライスバリアントsPD−L1、AR−V1又はAR−V7に由来する、請求項9に記載の医薬組成物。
- 前記腫瘍特異的突然変異は薬物耐性突然変異を含む、請求項1〜8のいずれか一項に記載の医薬組成物。
- 少なくとも1つの腫瘍特異的突然変異は、BTK/C481S,EGFR/T790M,BCR−Abl/T315I,BCR−Abl/Y253H,BCR−Abl/E255K,BCR−Abl/E255V,c−kit/T670I,PIK3CA/E545K,PIK3CA/E542K,HER2/G776(YVMA),HER2/E545K,EML4−ALK/G1269A,KRAS/G12V/D,ALK/L1196M,ALK/G1202R,ALK/S1206Y,ALK/1151T(ins),ALK/F1174C,ROS1/G2032R,AKT1/E17K,BRAF/V600E,MEK1/Q56P,MEK1/E203K,MEK1/C121S,MEK1/V60E,MEK1/G128V,MEK1/V154I,MEK1/P124S,MEK1/P124L,NRAS/Q61K/L/R,NRAS/T58I,MEK2/C125S,RAC1/P29S,ESR1/S463P,AR/V534E,AR/P535H,AR/L536Q,AR/L536R,AR/Y537C,AR/Y537S,AR/Y537N,AR/D538G及びAR/F876Lからなる群から選択される薬物耐性突然変異である、請求項11に記載の医薬組成物。
- 前記少なくとも1つの腫瘍特異的突然変異は、癌に罹患している対象の集団において年間少なくとも500例の患者の発症率を有し、前記少なくとも1つの突然変異は、表9で前記集団に関して列挙された突然変異を含む、請求項1〜12のいずれか一項に記載の医薬組成物。
- 前記少なくとも1つのネオ抗原ペプチドは、表9で列挙された少なくとも1つのペプチドを含む、請求項13に記載の医薬組成物。
- (a)前記対象の集団はCLLに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、SF3B1:p.K700E,MYD88:p.L273P,NOTCH1:p.P2514fs,ABCA11P:p.E901D,AHNAK:p.D3823E,ZNF814:p.E348D,AHNAK:p.V1220I,AHNAK:p.H1203N,ANKRD30A:p.A232V,APOOL:p.I138L,EGR2:p.H397N,MKI67:p.H2213D,NRAS:p.Q61R,PLIN4:p.M691V,XPO1:p.E571K,ZCRB1:p.L76F,ZNF700:p.N652H,ZNF700:p.Q654R,ZNF844:p.D458H,AHNAK:p.A4046V,ANKRD36:p.P337R,C1orf170:p.T203I,CAST:p.D639E,EGR2:p.E369K,GPR123:p.L630P,IKZF3:p.L162R,MUC4:p.P4224R,OR9Q1:p.M34L,PKD2:p.Y486F,PRAMEF11:p.R104Q,SYNJ1:p.I681F,TP53:p.R248Q,TP53:p.R248W,TRPV2:p.L627del,ZNF254:p.S498A,ZNF732:p.A459T,ZNF749:p.E530Q,ZNF845:p.M423I,ABCA11P:p.G900E,ACRC:p.E243D,ACRC:p.A244V,ACSL3:p.T188S,ADAMTS2:p.D948N,AGAP6:p.S127I,AHNAK:p.A2114G,ANKRD36:p.D1014Y,ARID3A:p.G550fs,ARID4A:p.D1154E,ATP2B4:p.R183H,ATRNL1:p.L1244F,BNC1:p.Y937N,BRAF:p.K601N,BTLA:p.Q86K,C14orf177:p.G90V,C2orf44:p.N456K,C3orf15:p.R552Q,CACNA2D1:p.Y376N,CALD1:p.E340K,CCDC15:p.P488H,CCDC79:p.N440T,CCNB3:p.A932T,CD109:p.L470Q,CD209:p.Q189L,CKAP2:p.*684K,CMA1:p.I81K,CMIP:p.A230T,CNTNAP4:p.I12F,CRYM:p.*315K,DICER1:p.E1705K,DPCR1:p.L716P,EIF3A:p.M1093L,EIF4G3:p.R8H,ETFDH:p.I281F,EWSR1:p.Y656C,F5:p.L1332P,F5:p.L1253F,FAM50A:p.H317R,FBXL13:p.S102R,FBXW7:p.R465H,FHL1:p.D184E,FILIP1:p.I522K,FRG1B:p.Q39K,GNB1:p.I80T,GPR110:p.R443G,GPR98:p.Y6152F,HDGFL1:p.188_189insA,IGF2BP2:p.T186S,IL1R2:p.L364fs,KIAA1109:p.L4680P,KRAS:p.G13D,KRTAP19−1:p.G61S,MAF:p.G53fs,MAGEC1:p.L609H,MAP2K1:p.K57N,MED12:p.L36R,MED12:p.G44S,METAP2:p.Y137N,METTL9:p.Y57F,MGP:p.V15L,MKI67:p.R2222K,MUC16:p.T11005I,MUC4:p.S3941N,MUC4:p.S3941G,MUC4:p.V3091L,MUC4:p.S2951Y,MUC4:p.A2841S,MUC4:p.S2760A,MUC4:p.T2335M,MUC4:p.T1627K,MUC4:p.T1547S,MUC4:p.H1133Q,MYD88:p.M240T,NEDD4L:p.P194del,NEFH:p.S704T,NRG4:p.G21fs,OR2A25:p.S105C,OR4C16:p.Y63F,OR4N4:p.L150fs,PABPC1:p.K254fs,PIWIL1:p.P372fs,PLCD3:p.E499fs,PLEKHB1:p.S146P,PPIL4:p.S382R,PRDM4:p.*802K,PRG4:p.N675H,PRKAB1:p.P104H,R3HDM2:p.S592G,R3HDM2:p.S588N,R3HDM2:p.R206W,RPS2:p.R200G,RPTN:p.G364S,SF3B1:p.K666E,SF3B1:p.N626Y,SF3B1:p.Y623C,SIX3:p.I27L,SLC39A7:p.L456fs,SLC6A9:p.R94K,TFG:p.A382V,TGOLN2:p.K83R,TGOLN2:p.T80S,TLR2:p.D327V,TNKS2:p.T619fs,TP53:p.R273H,TP53:p.C242F,TP53:p.R175H,TWISTNB:p.H306Q,UBXN7:p.A276V,WDR78:p.N110K,XIRP2:p.V3008E,ZNF382:p.H186Q,ZNF578:p.R306H,ZNF578:p.G311S,ZNF578:p.H334R,ZNF700:p.S649C,ZNF705A:p.D298N,ZNF836:p.K608Q,及びZNF836:p.I571Nからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも17.49%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項15に記載の医薬組成物。
- (a)前記対象の集団はBLCAに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、PIK3CA:p.E545K,FGFR3:p.S249C,TP53:p.R248Q,PIK3CA:p.E542K,RXRA:p.S427F,ZNF814:p.D404E,FBXW7:p.R505G,NOTCH2:p.P6fs,TP53:p.E285K,ANKRD30A:p.A353P,C3orf70:p.S6L,EFCAB6:p.R379K,ERCC2:p.N238S,FAM47C:p.Q225E,FOXQ1:p.S135L,HLA−A:p.Q78R,MUC4:p.H4205Q,OTUD4:p.T909I,SLAMF1:p.S277fs,SPRED3:p.S128del,TMCO2:p.S15fs,TP53:p.R280T,TP53:p.E271K,TP53:p.A159V,ZNF706:p.I8N,ZNF706:p.R3P,ACACB:p.E2318Q,ACPP:p.E321K,ACRC:p.A264V,ADAMTS2:p.23_24insL,AFF3:p.E919K,AHNAK:p.S4150F,AHNAK:p.D2889H,AHNAK:p.V1940A,ALX4:p.R126Q,ANKRD12:p.E627K,ANKRD32:p.T999N,ARID1A:p.S614L,ASXL2:p.117_118SS>S,ATP12A:p.R858C,ATP9A:p.R519Q,BCAS3:p.T214M,BPI:p.M255I,CACNG8:p.V146G,CAMSAP1:p.T466fs,CDC27:p.I91fs,CDKN1A:p.E44fs,CEP192:p.S2058L,CGB8:p.T18A,CHRNA3:p.L23del,CHST4:p.D352N,CLIP1:p.S1018fs,COX6A1:p.S8L,CREBBP:p.D1435H,CRIPAK:p.M48fs,CSPG5:p.D119N,CUL1:p.E485K,DLC1:p.S741T,DLL3:p.D318H,DOPEY2:p.E1196K,ECM1:p.E266K,EEF1A2:p.Y418S,EEF2K:p.E673K,EMILIN1:p.R27G,ERBB2:p.S310F,ERBB3:p.M91I,ERBB3:p.V104L,ERBB3:p.D297Y,ERCC2:p.Y14C,FAM155A:p.Q86del,FAM43B:p.E272del,FASTKD3:p.Q625E,FBXW7:p.S546L,FGFR3:p.R248C,FGFR3:p.G380R,FGFRL1:p.H479fs,GBE1:p.M587I,GIMAP1−GIMAP5:p.S311C,GNA13:p.R200G,H1FOO:p.A214fs,HEATR7B2:p.E1109K,HIST1H1D:p.I81M,HRAS:p.G12D,HRCT1:p.H92P,ILF3:p.E484K,KCNK2:p.S6W,KIAA0907:p.Q446P,KIF23:p.E350K,KLF5:p.S118L,KLHL15:p.D185G,LAMA4:p.E639K,LILRA1:p.H410Y,LILRB1:p.L479del,LLGL2:p.P955fs,LPIN1:p.S974L,LRRC16A:p.D227N,LRTM2:p.S139L,LURAP1L:p.55_56insGGG,MAGEC1:p.P553del,MCL1:p.E171del,MN1:p.S472L,MUC7:p.A191V,MVP:p.E412K,NBPF10:p.E3455K,NFE2L2:p.E79K,NFE2L2:p.R34G,NOS1AP:p.Q306del,OR2T35:p.V319fs,OR4N2:p.L150fs,PABPC3:p.K333fs,PAX3:p.S197L,PBX2:p.E70K,PBXIP1:p.H729del,PCDP1:p.E537K,PEX1:p.I370fs,PHLDA3:p.E82K,PLEKHM2:p.S459L,PLVAP:p.A321V,POLR3B:p.L372F,POTEC:p.R477Q,PPL:p.H326Y,PPP1R15A:p.E196K,PRDM16:p.E271Q,PRIC285:p.E1289Q,PRMT8:p.S31P,PUF60:p.S396L,RAB11FIP4:p.S596L,RAD51C:p.D167N,RAD51C:p.Y224H,RALGPS1:p.R381Q,RARS2:p.R6C,RBM26:p.P644A,RERE:p.K176N,RXRA:p.S427Y,SERPINA12:p.R211G,SF3B1:p.E902K,SLC6A9:p.R243W,SLC9A5:p.L447F,SPESP1:p.F121L,SRPRB:p.G14S,SYN2:p.A34del,SYTL2:p.I440M,TAB3:p.R211T,TAF1B:p.R292C,TAOK2:p.L981del,TAS1R3:p.E525K,TAS2R9:p.E163Q,TBC1D1:p.S71F,TBC1D2B:p.R920Q,TFPI2:p.R222C,TM6SF1:p.S15W,TMEM131:p.K640fs,TMEM19:p.G331fs,TP53:p.R273C,TP53:p.R248W,TP53:p.R175H,TP53:p.K132N,TRAM1:p.E41Q,TSKS:p.E513K,TTN:p.C20935G,UBOX5:p.S417L,UGP2:p.D262H,VGF:p.E433K,XAB2:p.E782K,XYLB:p.S87F,ZC3H4:p.E798K,ZNF208:p.K852E,ZNF208:p.I647S,ZNF626:p.G198E,ZNF749:p.Q457E,ZNF761:p.H373R,ZNF799:p.T43A,ZNF799:p.W41G,ZNF799:p.E589G,ZNF844:p.P503R,ZNF845:p.M423T,ZNF845:p.T479M,ZNF860:p.H464R,ZNF878:p.S181R,ZNF91:p.R333H,及びZNF91:p.H305Rからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも26.92%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項17に記載の医薬組成物。
- (a)前記対象の集団は新生物に罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、GATA3のコーディング配列中での少なくとも1つのヌクレオチドの挿入に起因するフレームシフト突然変異を含む、
請求項1〜14のいずれか一項に記載の医薬組成物。 - (a)前記対象の集団はBRCAに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、GATA3:p.L328fs,GATA3:p.N334fs,GATA3:p.L344fs,GATA3:p.H400fs,GATA3:p.S408fs,GATA3:p.S430fs,GATA3:p.H434fs,GATA3:p.H435fs,及びGATA3:p.S408fsからなる群から選択されるフレームシフト突然変異の任意の組み合わせを含む、
請求項19に記載の医薬組成物。 - (a)前記対象の集団はBRCAに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、PIK3CA:p.H1047R,PIK3CA:p.E545K,PIK3CA:p.E542K,AKT1:p.E17K,TP53:p.R175H,PIK3CA:p.N345K,PIK3CA:p.H1047L,SF3B1:p.K700E,GATA3:p.S408fs,PIK3CA:p.E726K,TP53:p.Y220C,TP53:p.H193R,PIK3CA:p.Q546R,TP53:p.R273C,TP53:p.R248W,TP53:p.R273H,TP53:p.I195T,TP53:p.H179R,FGFR2:p.N549K,NUP93:p.E14K,PIK3CA:p.C420R,PIK3CA:p.E453K,PIK3CA:p.Q546K,TP53:p.V216M,TP53:p.C176F,CDH1:p.E243K,ERBB2:p.L755S,KRAS:p.G12V,PIK3CA:p.E545A,TBL1XR1:p.I141fs,TP53:p.G266E,TP53:p.R248Q,TP53:p.Y163C,TP53:p.C141Y,TP53:p.G108fs,ACPP:p.R43W,AKT2:p.I289M,ARHGAP9:p.R137C,C9orf174:p.R136W,CDC42BPA:p.P675T,COL12A1:p.S395L,CRISPLD1:p.R222W,CT47B1:p.234_243EKLTEEATEE>E,CYP1A2:p.V483M,DAB2IP:p.E161K,DGKB:p.S13L,DMD:p.K1772N,DPEP1:p.V11L,ERBB2:p.S310F,ERBB2:p.D769Y,ERBB3:p.E928G,ESYT1:p.R816W,FAM179A:p.A831T,FAM58BP:p.A70T,FMN2:p.S751F,GALNTL6:p.K567del,GATA3:p.L328fs,GATA3:p.N334fs,GATA3:p.L344fs,GATA3:p.H400fs,GATA3:p.S408fs,GATA3:p.S430fs,GATA3:p.H434fs,GATA3:p.H435fs,GDAP1:p.T307A,GRB14:p.A300T,GUCY2C:p.G549C,IL17B:p.R34W,KCNB2:p.R231H,KIF1B:p.R1320W,KIF26B:p.V1113M,KLF4:p.K434Q,LY9:p.I69L,MAP2K4:p.S184L,MAP2K4:p.S251I,MAP2K4:p.T261fs,MAP3K1:p.L318fs,MAP3K1:p.I761fs,MAP3K1:p.V1346del,MAP3K1:p.L1384fs,MAPK13:p.E315K,MAPK4:p.V100M,MARCH5:p.R170C,MBP:p.E120K,MEFV:p.R377H,METTL15:p.Q53E,MS4A4A:p.V99M,MUC17:p.R4415H,MYH6:p.T847M,MYO5B:p.A405V,NARS2:p.P240R,NLGN4X:p.D382N,NLRC4:p.R288W,OR13G1:p.R258H,OR2AK2:p.V45I,OTOF:p.T388M,PACSIN2:p.Q331H,PALM2−AKAP2:p.A299T,PCDH19:p.R286C,PCDHGC5:p.D664N,PIK3CA:p.R88Q,PIK3CA:p.E110del,PIK3CA:p.K111del,PIK3CA:p.PVPHGLEDL447del,PIK3CA:p.L455fs,PIK3CA:p.M1004I,PIK3CA:p.M1043I,PIK3CA:p.N1044Y,PIK3R1:p.KPDL567del,PREX2:p.R363Q,PRRX1:p.A196V,PTEN:p.V317fs,RGSL1:p.V222I,RUNX1:p.R142fs,RUNX1:p.D96fs,SCN2A:p.R36K,SLC25A32:p.Q83E,SLC25A45:p.G106C,STRA6:p.Q68R,STX6:p.H153D,TBX3:p.H187Y,TFPT:p.S252C,TINAG:p.R332W,TMEM71:p.R63Q,TP53:p.E286K,TP53:p.R282W,TP53:p.V272M,TP53:p.S241fs,TP53:p.C238fs,TP53:p.C238F,TP53:p.C238Y,TP53:p.Y234C,TP53:p.Y220S,TP53:p.R209fs,TP53:p.G199V,TP53:p.L194R,TP53:p.H193L,TP53:p.H193Y,TP53:p.V173L,TP53:p.V173M,TP53:p.K132N,TP53:p.R110fs,TUBD1:p.A200V,VLDLR:p.R231H,VWA3A:p.V955I,VWF:p.K1720N,XPO1:p.E571K,及びZNF268:p.F901delからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも36.04%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項21に記載の医薬組成物。
- (a)前記対象の集団はCOADに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、KRAS:p.G12D,BRAF:p.V600E,KRAS:p.G12V,ACVR2A:p.K435fs,GRB14:p.KKK295del,SEC63:p.L532fs,TGFBR2:p.E125fs,ATR:p.K771fs,ICA1:p.N204fs,KRAS:p.G12C,TP53:p.R175H,ABCA8:p.R842Q,ACTL7B:p.R354H,ACVR2A:p.K435fs,AIM2:p.K340fs,ALG2:p.S302Y,ANKIB1:p.K144fs,ARSG:p.V131I,ATP10D:p.R311H,AXIN2:p.W663fs,C5orf30:p.D4N,CACNG3:p.V134I,CASP5:p.K78fs,CC2D2A:p.R1284C,CDH10:p.E349K,DNMT1:p.E432K,DOCK2:p.G170R,DOCK5:p.E177K,EGR2:p.R390H,ERBB3:p.V104M,FAM135B:p.R884H,FBXW7:p.R505C,FBXW7:p.R465H,FHDC1:p.R254W,FOXL1:p.N89K,HCN4:p.R525H,HLA−DMA:p.E84K,HTR3B:p.R236C,ITGA4:p.T673M,KIF18A:p.R17C,KIF20B:p.E991K,KLHL5:p.R326C,KRAS:p.A146T,KRAS:p.G13D,LPHN3:p.R1183Q,MAP2K4:p.R287H,MAPK8IP1:p.L217fs,MFSD5:p.R280Q,MUC16:p.R8606H,MYO6:p.D1180N,NAA25:p.S807Y,NBPF14:p.V44L,NRAS:p.Q61K,NRAS:p.G13R,PAX3:p.T424M,PGAM1:p.R240H,PHF3:p.R1410I,PIK3CA:p.R88Q,PIK3CA:p.E545K,PIK3CA:p.H1047R,PLXNA3:p.V14fs,POSTN:p.R508C,PTPRU:p.D1434N,PYGO2:p.Q150fs,RBBP7:p.E274K,SFPQ:p.R611Q,SGSM1:p.F1117L,SLC25A40:p.R96Q,SLC8A1:p.R431H,SLITRK3:p.S298L,SPATA22:p.S150L,SUN3:p.E128K,TGFBR1:p.S241L,TP53:p.R273H,TP53:p.R273C,TP53:p.R248W,TRPV5:p.R492H,USP40:p.S851L,VPS13C:p.D1359Y,ZBTB24:p.L607I,ZNF434:p.R306C,ZNF443:p.R301I,ZNF484:p.R138C,及びZNF770:p.S441Pからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも27.14%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項23に記載の医薬組成物。
- (a)前記対象の集団はGBMに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、HSD17B7P2:p.N175S,IDH1:p.R132H,EGFR:p.A289V,EGFR:p.G598V,WASH3P:p.G175S,ZNF814:p.D404E,RPSA:p.Q111E,NBPF10:p.E3455K,TP53:p.R248Q,BRAF:p.V600E,EGFR:p.A289T,PRB2:p.N230del,RGPD5:p.P1760A,TP53:p.R175H,CHEK2:p.K373E,EGFR:p.R108K,EGFR:p.R222C,PIK3CA:p.E545K,PIK3R1:p.G376R,POTEC:p.K507E,SDHAP2:p.V195E,SLC6A10P:p.K88N,TP53:p.R282W,TP53:p.R273H,CD3EAP:p.K219del,DST:p.R146C,EGFR:p.A289D,EGFR:p.H304Y,FRG1B:p.S71N,GOLGA8DP:p.A116E,KRTAP4−11:p.R121K,KRTAP4−11:p.S48R,MAP3K1:p.P324L,OGDH:p.I78fs,PODXL:p.S162fs,PSPH:p.V145I,SPINT1:p.A316V,TP53:p.R248W,TP53:p.G245S,TP53:p.Y220C,TP53:p.R158H,TSHZ2:p.A222T,UBC:p.L149R,ZDHHC4:p.R300H,ZNF844:p.R447P,AASS:p.T878fs,ABCC10:p.R570W,ADAM29:p.V205I,ADAMTS8:p.V524M,AGAP3:p.R766W,AICDA:p.Y144F,AK7:p.A159V,AK8:p.D243A,ANO2:p.R334C,AOX1:p.A507V,ARHGAP5:p.M691L,CALN1:p.V231I,CARM1:p.A202V,CD163L1:p.V721M,CD1D:p.L25fs,CD209:p.A283T,CDH18:p.A195T,CILP2:p.V553M,CIZ1:p.L89P,CLOCK:p.L123fs,COL6A5:p.T2224M,CSF2RB:p.G298S,CSMD3:p.E171K,CYP2D6:p.H352R,DCAF12L1:p.R335H,DCAF12L2:p.R246H,DPP10:p.V183I,DPY19L2P1:p.R378Q,DQX1:p.R505H,DRD5:p.S275R,DVL2:p.V66G,EFCAB6:p.R379K,EGFR:p.L62R,EGFR:p.R252C,EGFR:p.P596S,EGFR:p.P596L,EGFR:p.G598A,EGFR:p.E709K,EPHA1:p.A184T,ERC2:p.R20H,ESPNP:p.R627Q,FAM126B:p.R382H,FBN3:p.V886I,FGF14:p.T229M,FLG2:p.H1901fs,FLG:p.R2886H,FLNA:p.V1240M,FOXG1:p.H57del,FPR2:p.R54Q,FRG1B:p.K13N,FRG1B:p.A53T,GABRA6:p.V314I,GJB3:p.R160H,GLT8D2:p.A178V,GRM3:p.R183C,HERC1:p.R2330H,HNF1B:p.T417M,HTRA3:p.Q403R,IDH1:p.R132G,IFNA10:p.L80F,IFNA10:p.V79A,JHDM1D:p.R313H,JPH1:p.A395T,KEL:p.V411M,KIAA0907:p.R516fs,KIAA1704:p.D88del,KLK6:p.R120H,KRAS:p.G12D,KRTAP4−7:p.L121V,KRTAP4−7:p.L148V,KRTAP5−4:p.S131C,LAT2:p.L18W,LIMK2:p.R203H,LUM:p.R330C,MCOLN3:p.V141I,MGAT4B:p.T444P,MUC17:p.V77M,MUC17:p.3204_3205insP,MYO1D:p.T109M,MYO6:p.Q914fs,NAP1L5:p.140_141EE>E,NF1:p.F1658fs,NHP2L1:p.R84C,NLRP5:p.R737W,NPTX1:p.A263T,NUFIP2:p.Q29del,ODF4:p.R61C,OR11H12:p.H154P,OR2A7:p.V18I,OR2H1:p.V287I,OR2T12:p.R184H,OR5D13:p.R236C,OR5P2:p.A100V,OR6N2:p.R293C,PASD1:p.A236del,PCDH11X:p.T486M,PCDHB13:p.P221L,PDGFRA:p.E229K,PDGFRB:p.S650L,PHC3:p.T35del,PIK3C2B:p.R287fs,PIK3CA:p.M1V,PIK3CA:p.R88Q,PIK3CA:p.M1043V,PIK3CA:p.H1047R,PIK3R1:p.K379N,PODNL1:p.A150V,POTEE:p.V166M,POTEG:p.R136H,PRKCD:p.G432fs,PROKR2:p.V297I,PTEN:p.C136Y,PTEN:p.S170N,PTEN:p.R173H,PTEN:p.T277I,PTEN:p.V317fs,PTPN14:p.E716del,R3HDM2:p.412_413QQ>Q,RAB11FIP5:p.R170H,RASAL3:p.R82H,RB1:p.N316fs,RDH8:p.A198V,REN:p.15_16LL>L,RIMBP2:p.R830H,SCAF11:p.E926fs,SCN7A:p.R1358H,SCNN1G:p.R564H,SDHAP2:p.R31C,SDHAP3:p.A66T,SEMG2:p.R292C,SH3RF2:p.R318C,SHB:p.A460T,SIGLEC10:p.T250M,SLC13A5:p.Q273P,SLC17A9:p.V324I,SLC22A9:p.R407Q,SLC26A3:p.V88I,SLC5A3:p.A302fs,SLC9A4:p.R631H,SPAM1:p.R346Q,SPEN:p.E803fs,SPTA1:p.A2011V,SUSD5:p.T513M,SYNE1:p.R8468H,TARSL2:p.G366D,TAS2R41:p.A255T,TAT:p.R367H,TFPI2:p.R206C,THSD7B:p.R90C,TMEM147:p.A92V,TMEM156:p.R81C,TMPRSS6:p.V302I,TNFSF9:p.A232T,TP53:p.C238F,TP53:p.C238Y,TP53:p.Y234C,TP53:p.V216M,TP53:p.H179R,TP53:p.T155N,TRAPPC10:p.K133fs,TTN:p.R21402W,TTN:p.V16403M,TUBBP5:p.V102M,TYRP1:p.T352fs,UBC:p.R73L,UGT2B28:p.P289H,USH2A:p.R3719H,WASH6P:p.L211V,ZFP42:p.V227I,ZFP42:p.T264M,ZNF181:p.V305G,ZNF280B:p.E400K,ZNF534:p.N583K,ZNF563:p.W208fs,ZNF844:p.F487L,及びZPBP:p.R154Cからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも34.36%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項25に記載の医薬組成物。
- (a)前記対象の集団はHNSCに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、PIK3CA:p.E545K,PIK3CA:p.E542K,TP53:p.R175H,PIK3CA:p.H1047R,TP53:p.R282W,TP53:p.R248Q,TP53:p.R273H,TP53:p.R248W,TP53:p.G245S,RHOA:p.E40Q,EP300:p.D1399N,HRAS:p.G13V,MB21D2:p.Q311E,NFE2L2:p.E79Q,TP53:p.H179Y,FBXW7:p.R505G,HIST1H2BF:p.E77K,HRAS:p.G12D,MAPK1:p.E322K,NFE2L2:p.D29H,TP53:p.P278S,TP53:p.C242F,TP53:p.Y220C,TP53:p.H193L,TP53:p.H179R,TP53:p.V157F,TP53:p.R110L,AKNAD1:p.K620R,ANXA6:p.R231Q,AP1G2:p.D243N,ATAD5:p.D441N,ATP6AP2:p.E119Q,B2M:p.M1I,BCL11A:p.E579K,C1orf172:p.Y30fs,C7orf57:p.E30K,CCDC135:p.E313K,CDH12:p.P706T,CDH7:p.Q225K,CDK11B:p.E79del,CDKN2A:p.H83Y,CHCHD4:p.T79M,CIRH1A:p.S250I,CLSTN2:p.P759L,CRB1:p.L628fs,DENND5B:p.G1023E,DNAH5:p.Q1797E,DSP:p.R160G,EDA:p.L58F,EFCAB6:p.E1002K,ELF4:p.S415L,EP300:p.C1164Y,EPHA3:p.T802R,EPHA6:p.D952H,ERBB2:p.M916I,ESRRA:p.D219N,FAM101A:p.I89del,FBXO24:p.M553V,FCAR:p.V233M,GPANK1:p.Y351fs,GPR20:p.V300I,GPRASP1:p.S706L,GPRIN3:p.R633fs,GRID2:p.T649fs,GRM3:p.F682L,GUCY2F:p.S404L,HCRTR2:p.D100Y,HIST1H3C:p.K37M,HIST1H4C:p.R68P,HLX:p.S12T,HOXD10:p.Y151C,HPS3:p.K812N,HRAS:p.G12A,HRAS:p.G12S,IFT140:p.E664K,INPPL1:p.T493M,ITGA10:p.R669Q,ITGB1:p.D158N,KIAA1429:p.D1526N,KIAA1429:p.S138F,KPRP:p.E553fs,KSR2:p.T555M,LINGO2:p.P410T,LPCAT1:p.V187del,MAGEB3:p.V75A,MAP3K7:p.E524Q,MAP4K3:p.P657fs,MAP9:p.K485N,MARS2:p.R481Q,MBOAT7:p.R424W,MUC16:p.R12774H,MUC5B:p.T4388M,MYH11:p.E993K,MYOCD:p.T493M,MYOM1:p.R63Q,NANOS3:p.S183L,NCOR1:p.R1561Q,NCOR1:p.Q169E,NCR1:p.D213N,NFE2L2:p.E79K,ODZ1:p.R366M,OPN1MW:p.A285T,OR2M2:p.A95fs,OR2M3:p.M273I,OR2T33:p.R120S,OR6V1:p.I248fs,PABPC5:p.P58L,PACSIN1:p.E359K,PIK3CA:p.M1043V,PIK3CA:p.H1047L,PIWIL1:p.V699M,PLIN5:p.430_431insNG,PLXNA3:p.P58S,PRB1:p.R274fs,PRSS1:p.D107N,RAC1:p.A159V,RGS7:p.L21fs,RPA1:p.R31H,RPL18:p.R178fs,SFI1:p.R821Q,SLC35D3:p.*417S,SLC5A7:p.G336C,SMARCA4:p.P913L,STAT3:p.D661V,SYCP2:p.K474N,SYT6:p.R249H,TBX21:p.E494K,THSD7A:p.R1046C,THSD7A:p.C728F,TMC3:p.R934S,TMTC2:p.T409R,TP53:p.E285K,TP53:p.C275F,TP53:p.R273C,TP53:p.G266E,TP53:p.G262V,TP53:p.R249S,TP53:p.G245V,TP53:p.C238F,TP53:p.M237I,TP53:p.Y236C,TP53:p.Y236D,TP53:p.R196P,TP53:p.PHHERC177del,TP53:p.V173L,TP53:p.V173M,TP53:p.Y163C,TP53:p.P151T,TP53:p.V143M,TP53:p.P58fs,URI1:p.S13fs,ZNF177:p.K384N,ZNF750:p.S96fs,及びZZZ3:p.R5Qからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも21.61%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項27に記載の医薬組成物。
- (a)前記対象の集団はKIRCに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、WASH3P:p.G175S,VHL:p.L89H,VHL:p.S111N,WDR52:p.V1227G,KRT1:p.552_559YGSGGSSY>Y,KRTAP1−1:p.S34C,PALM2−AKAP2:p.1075_1076insEA,ZNF814:p.D404E,DOPEY2:p.Y2048S,KAT2B:p.W111fs,PABPC1:p.E156fs,PCDHGC5:p.G599V,PIK3CA:p.E545K,RRAD:p.A278E,SIRPA:p.D131del,UQCRFS1:p.I83V,VHL:p.P45L,VHL:p.V74D,VHL:p.R82P,VHL:p.L116fs,VHL:p.L158V,VHL:p.L169P,WDR73:p.DGTRSQ315del,ABCA3:p.E95D,ABCC5:p.L1090fs,ACADS:p.R330H,ACAN:p.G952E,ACSM2A:p.L402fs,ADAM23:p.K380M,ADH1A:p.D154V,AFF3:p.SA620del,AGAP6:p.D69fs,AGAP7:p.E71fs,AHNAK:p.5_6insE,AIDA:p.K247M,ALAS1:p.G302R,ANAPC16:p.R95fs,ANK2:p.N453S,ANKRD36:p.K378R,ARHGEF5:p.E487G,ARSD:p.AGV234del,ARSD:p.A234G,ATP2A1:p.G704C,ATP7A:p.Q990fs,AVIL:p.G299fs,AXDND1:p.EQ991del,BAP1:p.N78S,BAP1:p.M1I,BLM:p.H660Q,BMPER:p.RIAL444del,BRK1:p.K70Q,BTRC:p.I416M,C16orf55:p.D118A,C19orf33:p.K102E,C20orf132:p.E382D,C2orf71:p.1225_1226insS,C6orf132:p.173_182PPPLLLEPPP>P,CASP5:p.R23fs,CATSPER4:p.T425M,CCDC120:p.I8V,CCR5:p.S185I,CCZ1:p.E214D,CD7:p.P174fs,CDAN1:p.L646fs,CDH23:p.F1132Y,CDK5RAP2:p.H1592Q,CENPB:p.E410V,CERCAM:p.A85fs,CHEK2:p.K373E,CHIT1:p.P284fs,CLCN2:p.645_645R>RR,CLUL1:p.G463R,CNTNAP4:p.Y436S,CUL9:p.D1726E,CWC25:p.K364E,CXorf51B:p.V43I,DDX39B:p.F149fs,DIRAS1:p.G79C,DISP2:p.F1021S,DNMBP:p.T78P,DOCK8:p.A177fs,DPCR1:p.H383N,DPCR1:p.L768del,EGFR:p.L838M,ENPEP:p.F289C,ESPNP:p.W122fs,FAM105A:p.H126N,FAM186A:p.IPPQAQELEIPL1556del,FAM194B:p.EEEEYL135del,FAM22F:p.S691del,FAM22F:p.P690fs,FAM47A:p.LRPEPPETGVSH235del,FAM47C:p.P388S,FAM78A:p.W192L,FBXO34:p.Q294fs,FGFR3:p.R571fs,FGFR3:p.P716H,FMN2:p.AIPPPPPLPGA956del,FOXD4L4:p.C405fs,FUT6:p.S140fs,GJA1:p.A311fs,GOLGA5:p.L492I,GPM6A:p.A50V,GPRIN1:p.231_239RKEDPGSLR>R,GRAMD1B:p.P356H,GREB1:p.S344Y,GRM6:p.A718fs,GUSB:p.L501V,GUSB:p.C500R,HBB:p.F86C,HDAC6:p.G977D,HEXDC:p.T482P,HNF1B:p.N302K,HNRPLL:p.M327V,HRC:p.P439fs,HSFX2:p.D92E,IL1RAP:p.F50C,IVL:p.EQQEGQLKHP167del,KANK4:p.S253P,KCNJ18:p.E378K,KIAA1751:p.K97N,KRT1:p.SSYGSGG557del,KRT2:p.L299W,KRT4:p.F154fs,KRTAP10−6:p.49_49P>PSCCAP,KRTAP5−7:p.C120Y,KRTAP9−2:p.CCQP140del,LARS:p.P185fs,LCP1:p.P445fs,LOC338651:p.PHRSHSPPWS102del,LRCH2:p.D717G,LTA4H:p.F107L,LYST:p.Q710H,MAFA:p.207_208HH>H,MAGEC1:p.P239del,MAP2K5:p.Q445R,MAPKAPK2:p.T214fs,MARCKS:p.K152fs,MED12L:p.P2071S,MEGF6:p.A582fs,MGST3:p.G143fs,MLXIPL:p.S790R,MOCOS:p.S849P,MST1R:p.M464V,MTOR:p.C1483F,MTOR:p.L1460P,MUC16:p.P11260A,MUC17:p.R1227fs,MUC17:p.H1228fs,MUC2:p.1480_1481insI,MUC6:p.P1569fs,MYO3A:p.N525S,NBPF3:p.D491V,NCOR1P1:p.L52P,NDUFA4L2:p.G3fs,NEFH:p.651_651K>KAKSPEK,NES:p.V611L,NFAT5:p.Q906E,NOXO1:p.G3fs,NR2C1:p.S270I,NSMCE2:p.Q31fs,NUDT21:p.W13fs,ODZ2:p.W628fs,ONECUT1:p.L424M,OR10A3:p.F73V,OR4F4:p.E15G,OR4N2:p.L150fs,OR51B5:p.A66fs,OR7C1:p.F104fs,PABPC1:p.Y408F,PABPC1:p.K333fs,PABPC1:p.A181T,PABPC3:p.P191T,PALLD:p.A996T,PALM2−AKAP2:p.G1118fs,PARD6A:p.G84fs,PASK:p.T62I,PCDH15:p.C1713F,PCNT:p.G136S,PGM5:p.G426fs,PGPEP1L:p.R164fs,PIK3C2B:p.F1473L,PIK3CA:p.N1044K,PIK3R5:p.L371R,PITRM1:p.P816T,PLIN4:p.T347I,PODXL:p.28_30PSP>P,POLR1C:p.K332Q,POTED:p.I214V,PPM1E:p.R311W,PRKCE:p.Q157fs,PROX1:p.V225D,PRRC2C:p.P1883T,PRX:p.P549L,PSD3:p.T563P,PTCH1:p.P689H,RANBP3:p.L386W,RASGEF1C:p.A188T,RGPD6:p.F946L,RHEB:p.Y35N,RIMBP3:p.A396del,RIN3:p.L449V,RLIM:p.S501L,RNF17:p.S351C,RUNX2:p.P466H,SCAF1:p.P208fs,SDK1:p.K508fs,SECISBP2:p.D608E,SERPINB3:p.S209C,SESTD1:p.I306M,SFRP4:p.P325fs,SH3KBP1:p.P563fs,SIPA1L3:p.G777A,SLC13A2:p.L493fs,SLC16A9:p.CVLLGG470del,SLC25A5:p.A118T,SLC44A5:p.V70F,SLC4A8:p.N229K,SLC52A1:p.G370del,SLC52A2:p.G399fs,SLC6A10P:p.K88N,SLC6A14:p.A85fs,SLC9B1:p.V446fs,SON:p.VLESSAVT1359del,SP8:p.G165del,SPAG1:p.353_354insD,SPATA9:p.C189F,SPEG:p.A992fs,SPTB:p.T1864I,SRA1:p.V110L,STAT6:p.P354fs,STK11IP:p.A155E,STXBP3:p.E279G,SVIL:p.M93T,SYNE1:p.R8468S,SYNJ2:p.K832T,SYNPO:p.G619fs,TAOK2:p.Q899fs,TAS2R38:p.I311T,TBC1D12:p.F608Y,TBC1D1:p.H277R,TBC1D3:p.A556fs,TBC1D3C:p.A495fs,TBC1D3F:p.A556fs,TCF7:p.H140P,TDRD10:p.W276C,THRAP3:p.K551R,TMEM102:p.A110P,TMEM161B:p.L142P,TMEM230:p.D140G,TMEM47:p.G87S,TRDN:p.*730Y,TTBK1:p.T1065S,UBE2O:p.R1118fs,UBR5:p.T1306fs,UPK3A:p.G272fs,VHL:p.G39S,VHL:p.S65L,VHL:p.N78D,VHL:p.R79P,VHL:p.W88L,VHL:p.L89P,VHL:p.R107P,VHL:p.S111R,VHL:p.H115N,VHL:p.D121Y,VHL:p.G123fs,VHL:p.D126fs,VHL:p.L128H,VHL:p.L135F,VHL:p.I151T,VHL:p.L153P,VHL:p.L158P,VHL:p.Q164fs,VHL:p.L184P,VHL:p.L188P,WASH6P:p.315_316insAPP,WASH6P:p.T201M,WWP2:p.G458A,ZCCHC6:p.K937N,ZFAND2B:p.I149T,ZFR2:p.Y107N,ZNF273:p.N319K,ZNF462:p.S650T,ZNF516:p.A256D,ZNF519:p.H431Y,ZNF687:p.F858C,ZNF732:p.E227Q,ZNF880:p.Q406R,ZP3:p.V362fs,及びZRANB1:p.*735fsからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも6%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項29に記載の医薬組成物。
- (a)前記対象の集団はLAMLに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、NPM1:p.W288fs,DNMT3A:p.R882H,NPM1:p.L287fs,IDH2:p.R140Q,IDH1:p.R132C,FLT3:p.D835Y,DNMT3A:p.R882C,FLT3:p.600_601insFREYEYD,IDH1:p.R132H,NRAS:p.G13D,U2AF1:p.S34F,KIT:p.D816V,FLT3:p.D835E,IDH2:p.R172K,NRAS:p.G12D,WT1:p.S381fs,ABTB1:p.L249fs,DNMT3A:p.R736H,FLT3:p.D835H,KRAS:p.G12D,NPM1:p.L287fs,NRAS:p.Q61H,NRAS:p.Q61K,PHACTR1:p.V251fs,RBBP4:p.E330K,RUNX1:p.R135G,及びU2AF1:p.S34Yからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも47.45%は前記少なくとも1つの腫瘍特異的突然変異を含む、請求項31に記載の医薬組成物。
- (a)前記対象の集団はLUADに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、KRAS:p.G12C,KRAS:p.G12V,EGFR:p.L858R,U2AF1:p.S34F,KRAS:p.G12A,TP53:p.R158L,KRAS:p.G12D,PIK3CA:p.E545K,TP53:p.R273L,EGFR:p.ELREA746del,KRAS:p.G13D,A2ML1:p.S654fs,BRAF:p.G469V,CTNNB1:p.S37F,EGFR:p.G719A,KRAS:p.G13C,MYOF:p.G165fs,EGFR:p.S768I,FAM47C:p.G948W,KRAS:p.Q61L,MYH10:p.L1091fs,NRAS:p.Q61L,OR4C3:p.H130fs,PI15:p.V22F,RAD50:p.D69Y,RIT1:p.M90I,TP53:p.C275F,TP53:p.R249M,TP53:p.R249G,TP53:p.R248P,TP53:p.R175H,TP53:p.Y163C,TP53:p.A159P,TP53:p.V157F,TP53:p.G154V,ABCB1:p.R467L,ACBD3:p.R224L,ACTA1:p.G275C,ACTN2:p.D893Y,ADAM30:p.Q741H,ADAMTS14:p.G238C,ADAMTS20:p.R1251S,ADAMTS20:p.R541L,ADAMTS5:p.L549M,ADAMTS9:p.G659W,ADCY2:p.P1016T,ADCY5:p.G623C,AFP:p.A182G,AHDC1:p.P155Q,AKAP1:p.LDRNEEG317del,ALKBH1:p.K137E,ANK2:p.Q3076L,ANKRD44:p.G339C,ANO3:p.A41S,AP1G1:p.R723L,APBB2:p.T243fs,APOB:p.L973M,APOBR:p.R840L,AQP10:p.Q261L,ARAP3:p.R1226L,ARFIP2:p.R86L,ARHGAP36:p.P16H,ARL13B:p.R358L,ASCC2:p.R365L,ASPM:p.S240F,ASXL3:p.P1470Q,ATRN:p.P197Q,AVIL:p.G64W,AXDND1:p.W101R,B3GAT1:p.R125L,BARX2:p.R68P,BCL9L:p.G980C,BCOR:p.N1459S,BEND2:p.P536Q,BMS1:p.G455V,BRAF:p.V600E,BRAF:p.G466V,BRD9:p.G330W,BRF1:p.V469L,BRWD3:p.H160N,BTRC:p.G260W,C11orf68:p.V135L,C15orf2:p.V753F,C15orf2:p.G906W,C18orf8:p.M61I,C1GALT1:p.G299V,C1orf173:p.G1454S,C1orf173:p.S688Y,C1orf87:p.R541L,C2orf53:p.P272H,C3orf20:p.R740L,C7:p.R687S,C7orf58:p.G140W,C7orf58:p.R238L,CACNA1A:p.S772Y,CACNA1D:p.R1073L,CACNA1E:p.R2089Q,CACNA2D1:p.A352E,CACNG3:p.R232W,CADPS:p.R959S,CALB2:p.R258C,CAMK2B:p.G131V,CARD11:p.I1065M,CCDC111:p.R417L,CCDC141:p.E1204V,CCDC19:p.R279L,CCDC19:p.R207L,CCKAR:p.L271M,CD1B:p.W41L,CDH10:p.S577R,CDH10:p.R472C,CDH10:p.R128S,CDH18:p.A721S,CDH20:p.P433H,CDH6:p.Q237K,CDK13:p.R880S,CDK4:p.R24L,CELF4:p.A309P,CFDP1:p.P129fs,CHN1:p.K264N,CHRNA4:p.S396R,CHRNA9:p.P361Q,CLCNKA:p.P124Q,CLEC12B:p.W217L,CLK4:p.R68L,CNTFR:p.D252Y,CNTN6:p.R807M,CNTNAP2:p.F395L,COL19A1:p.P538Q,COL5A2:p.G612W,COL5A2:p.G516W,COL9A1:p.P211Q,CPE:p.P290Q,CPNE8:p.Q127H,CPSF4:p.P219Q,CRIPAK:p.S180fs,CROT:p.Q580H,CRTC3:p.S363L,CSMD2:p.P1855Q,CSMD3:p.T2810N,CSMD3:p.P2727T,CSMD3:p.Q174H,CUBN:p.G596C,CUL4B:p.R91S,CUL7:p.L371F,CXCL9:p.K122N,CXCR4:p.E345Q,CXorf59:p.R198M,CYP11B1:p.R498G,CYP27A1:p.P112Q,CYP2B6:p.A444E,DACH2:p.R539L,DCC:p.R446H,DDX56:p.R329L,DEFA1:p.W90C,DENND2A:p.R688Q,DENND2A:p.R499L,DMBT1:p.R1521L,DNAH5:p.R3822L,DNAH9:p.S2993R,DNAI2:p.V231L,DPP6:p.L757F,DSG4:p.R128L,DST:p.A4410S,DZIP3:p.M322L,EBF3:p.R231S,EFCAB4B:p.E265Q,EHHADH:p.Q704H,ELAVL2:p.L263F,EMR1:p.R493H,ENAH:p.R514L,ENPP1:p.G738E,EPB41L3:p.A896S,EPG5:p.R2289L,EPHA1:p.G111V,EPHB6:p.R337H,EPRS:p.V1151L,ERBB2:p.S310Y,ERBB2:p.774_775insAYVM,ERBB2:p.776_776G>VC,ERN2:p.T295K,FAM120B:p.P467H,FAM127C:p.F52L,FAM135B:p.W240C,FAM210B:p.L112F,FAM47A:p.R690L,FAM47B:p.W163C,FAM47B:p.L567F,FAM5C:p.R457G,FAM70B:p.P277T,FAM71B:p.L583M,FAM75A6:p.R304S,FAM75A6:p.P54L,FAM75D1:p.R1265S,FARP1:p.R299L,FAT1:p.R4359L,FAT3:p.R1266H,FAT3:p.G1899V,FAT3:p.H3574N,FBXO18:p.M144I,FBXO31:p.G443fs,FCGBP:p.A1022S,FCRL2:p.V505L,FERD3L:p.P92H,FGB:p.E339Q,FGFR2:p.E116K,FGFRL1:p.R243L,FGFRL1:p.V274L,FKBPL:p.R320L,FLG2:p.G1545V,FLG2:p.L572F,FLG:p.P3254H,FLG:p.P2466Q,FMN2:p.P992T,FOLH1:p.A643S,FOXRED1:p.R136L,FRAS1:p.C382F,FRG2B:p.D142Y,FRMPD1:p.E1093Q,FSHB:p.T43N,GABRA5:p.Q224K,GADL1:p.L352I,GAL3ST3:p.A271S,GALNT14:p.D234E,GAS8:p.R313S,GATA3:p.M443I,GCDH:p.R82C,GEM:p.R268L,GFRAL:p.Q308K,GIT2:p.R123L,GJB4:p.R22S,GLB1L2:p.I407M,GLOD4:p.Q223fs,GNAO1:p.P283Q,GPNMB:p.I174M,GPR137B:p.G240C,GPR158:p.P762T,GPR98:p.G4307W,GRB7:p.R239L,GRHL1:p.G608W,GRID1:p.R683L,GRIK1:p.R368Q,GRM5:p.P895fs,GTF2E1:p.R192L,H3F3C:p.R131L,HAO2:p.H12N,HCN1:p.P231Q,HECW1:p.A183S,HGF:p.M686T,HIP1:p.R940L,HIST1H1E:p.R25P,HLA−DMA:p.A236fs,HOXA5:p.G11C,HS3ST3A1:p.G399W,HSD17B6:p.F209L,HSPA13:p.V85L,HSPBAP1:p.R282L,HTR5A:p.W298C,IGHMBP2:p.R615S,IL2:p.R103M,IL2RA:p.G61W,IL32:p.P215T,ING1:p.A220S,INMT:p.G56V,ITGA8:p.G616C,ITGAD:p.L528fs,ITGAX:p.R283H,ITIH1:p.G254W,ITIH2:p.L842V,ITK:p.R29L,ITPR2:p.P358Q,JMJD1C:p.R1198S,KCNA1:p.G376C,KCNH8:p.M455I,KCNJ3:p.L430F,KCNK18:p.G23V,KCNK2:p.R166L,KEAP1:p.G603W,KEAP1:p.R260L,KEAP1:p.S144F,KHDRBS2:p.S203L,KIAA1211:p.P1203Q,KIAA1549:p.L1272F,KIAA1755:p.Q108H,KIF15:p.E252Q,KIF9:p.G480R,KIRREL:p.G604C,KLF5:p.E419Q,KRAS:p.Q61H,KRTAP10−12:p.R64P,KRTAP27−1:p.M124I,KRTAP4−5:p.C91F,KRTAP5−1:p.S193Y,L1CAM:p.R632S,L3MBTL4:p.W162L,LAMA1:p.D1030Y,LAMB1:p.T1610fs,LAMB4:p.G1239W,LAMB4:p.G588W,LEF1:p.I53V,LEKR1:p.Q450K,LIM2:p.S150T,LIPJ:p.P236Q,LPHN3:p.E740D,LPPR4:p.R527S,LRFN5:p.N132K,LRP1B:p.G3563C,LRP2:p.M4039I,LRRC4C:p.Q10L,LRRIQ1:p.W792L,LRRTM4:p.S243Y,MAGEA10:p.R7H,MAGEC2:p.W109C,MAGI1:p.G1156V,MAGI2:p.P1044T,MAK:p.P373Q,MAP2K1:p.K57N,MARCH11:p.R193L,MEPE:p.G142C,MKI67:p.R1081S,MKRN3:p.P448H,MLL3:p.N393K,MLL3:p.Q356K,MMRN1:p.A1013S,MOGAT2:p.Q66fs,MXRA5:p.D324Y,MYH4:p.T790M,MYH8:p.R1117C,MYH8:p.H1006N,MYO5B:p.R708L,MYO7B:p.P2040H,MYO9B:p.R94L,MYT1L:p.P351Q,NAA11:p.T184K,NAB1:p.L72F,NAV1:p.R938L,NBPF15:p.G665E,NCAM2:p.G698C,NCAPD2:p.R220L,NDST3:p.V427I,NEK2:p.R239S,NFIA:p.L294F,NLRP3:p.R157C,NOTCH2:p.R2105L,NR4A2:p.R314L,NRG1:p.V481L,NRXN1:p.R813S,NRXN1:p.A660S,NRXN3:p.P23H,NRXN3:p.R103C,NTM:p.G333C,NUAK1:p.G173C,NYAP2:p.P437L,ODZ3:p.P218Q,OIT3:p.R508S,OOEP:p.R101C
,OPN1LW:p.P283H,OR10H4:p.M199I,OR10J1:p.L157Q,OR10X1:p.L298I,OR10Z1:p.L205F,OR14A16:p.G160C,OR2A25:p.M80I,OR2AG2:p.G249W,OR2AK2:p.W37C,OR2H2:p.L205F,OR2J2:p.G234W,OR2L13:p.M106I,OR2L13:p.T242A,OR2L3:p.M1I,OR2L3:p.L67I,OR2L8:p.R121C,OR2L8:p.R171S,OR2M2:p.F177L,OR2M2:p.F323L,OR2M5:p.V205L,OR2T12:p.M258L,OR2T27:p.D11Y,OR2T33:p.P165Q,OR2T34:p.C246F,OR2T6:p.V213L,OR4C12:p.D309Y,OR4C12:p.M279I,OR4C16:p.L162M,OR4M2:p.A119S,OR4M2:p.A161S,OR51V1:p.P298T,OR5AS1:p.M39I,OR5B12:p.S289C,OR5B17:p.M266I,OR5D14:p.H246N,OR5D16:p.P264T,OR5D18:p.R123H,OR5F1:p.G44V,OR5J2:p.A36S,OR5L1:p.T275N,OR6C65:p.I154fs,OR6C75:p.G94W,OR6K2:p.P79Q,OR8D2:p.R306M,OR9A2:p.R289W,OR9G9:p.R169L,P2RX7:p.P142Q,P2RY10:p.T10K,P2RY10:p.V196L,PABPC5:p.R99S,PAPPA2:p.P917T,PAPPA2:p.P1706H,PBLD:p.P55Q,PCDH10:p.R587S,PCDH10:p.V986L,PCDH11X:p.R1010I,PCDHAC2:p.A742V,PCDHB5:p.P649S,PCDHGC5:p.K12N,PCDHGC5:p.P684H,PCLO:p.P3946T,PCMTD1:p.R271M,PDPR:p.G793W,PDYN:p.G191W,PDZD2:p.R565S,PDZD8:p.S980G,PFKM:p.R118S,PIGM:p.R225L,PIK3CA:p.E542K,PIK3CG:p.V165I,PILRA:p.S291fs,PLCE1:p.G564C,PLCL1:p.M564I,PLEKHA6:p.R110L,PNKP:p.G174W,POGZ:p.G75W,POLE:p.R573L,POM121L12:p.P231T,POM121L12:p.P242H,POTEE:p.V288M,POTEM:p.S78R,POU3F3:p.D321Y,PPT2:p.R265L,PRDM16:p.P1036L,PRELP:p.D201Y,PRPF40B:p.R160S,PRPF6:p.R763L,PTEN:p.R234L,PTPN11:p.G503V,PTPN13:p.E2067K,PTPRJ:p.G334W,PTPRT:p.R928L,PTPRU:p.P559S,PXDNL:p.P1456T,QSOX1:p.R401L,QSOX2:p.R683L,RAB13:p.R167L,RAB8A:p.G20W,RAPGEFL1:p.R356L,RBM19:p.G390W,RCL1:p.P112Q,REG1B:p.W57L,REG3A:p.S150L,REG4:p.G110V,RIMS2:p.R55L,RIT2:p.R85L,RLN2:p.S138C,RNF20:p.P529Q,RORB:p.G94W,RPL10L:p.K187T,RPRD2:p.R97S,RTN1:p.S103W,RUNX2:p.R337M,RYR2:p.K2413N,RYR2:p.M4334I,RYR3:p.P1670T,S100PBP:p.R5L,S1PR1:p.L104F,SAGE1:p.H298Q,SALL1:p.E965K,SALL1:p.R898W,SALL4:p.R187L,SBSPON:p.G133W,SCAF8:p.G740C,SCG2:p.P252Q,SCML4:p.L261F,SCN2A:p.T155K,SEC24D:p.A50fs,SEC61A2:p.G126V,SERPINA12:p.D253Y,SERPINA9:p.M414I,SERPINC1:p.R45L,SGIP1:p.R502L,SH3GL3:p.R174L,SH3PXD2A:p.S759L,SI:p.V1217F,SKOR1:p.Y883C,SLC1A2:p.F348fs,SLC24A5:p.R35S,SLC25A48:p.R101S,SLC35E2:p.R201L,SLC39A12:p.C628S,SLC39A6:p.R53L,SLC4A5:p.I533V,SLC5A1:p.G53W,SLC5A7:p.G442V,SLC6A11:p.W299L,SLC6A2:p.S354C,SLC8A1:p.G433C,SLIT1:p.R1460L,SLITRK5:p.R68L,SLITRK5:p.R468M,SLITRK6:p.N741K,SORL1:p.R205L,SOS1:p.N233Y,SOX9:p.E75K,SPAG16:p.V439L,SPIN4:p.Y171C,SPRR2D:p.P30fs,SPTA1:p.G2367C,SPTA1:p.D2243Y,SSX3:p.P127T,ST18:p.H778Q,STAC3:p.G117W,STOML3:p.D86Y,STX2:p.R107L,SUMF2:p.G110E,SUN3:p.P339Q,SV2C:p.P60Q,SYNDIG1:p.D135Y,SYNE1:p.K8632E,TARS2:p.E199K,TAS2R16:p.Q177H,TCOF1:p.K264R,TCTE1:p.S127I,TDO2:p.Q197H,THSD7A:p.G810W,THSD7A:p.R801L,TIFAB:p.D43E,TIGD4:p.S312F,TLL1:p.P53Q,TMPRSS11E:p.G259C,TMTC1:p.A864D,TMTC1:p.G212V,TMX3:p.R151C,TNNI1:p.R67L,TNR:p.L692I,TOP2A:p.R736L,TP53:p.R337L,TP53:p.E285K,TP53:p.R283P,TP53:p.D281N,TP53:p.C277F,TP53:p.V274F,TP53:p.R273H,TP53:p.I255F,TP53:p.R249S,TP53:p.M237I,TP53:p.S215I,TP53:p.C176F,TP53:p.R110L,TP53:p.G105C,TP53:p.P72fs,TPO:p.E558K,TRAF6:p.R502S,TRIM42:p.Q127K,TRIM48:p.A93D,TRIM4:p.R398L,TRIM51:p.W131C,TRIM9:p.R337S,TRIML1:p.H399Q,TRPM3:p.G298W,TSC1:p.G378C,TSG101:p.R276S,TSHZ1:p.K501N,TSHZ3:p.G677V,TTF2:p.R761S,TUBA3C:p.Q176fs,UBAC1:p.K330N,UBE2J2:p.G193W,UBR1:p.G1647W,UGT2B7:p.M214I,VMP1:p.E369Q,VPS13B:p.G2575W,VSTM2A:p.G75V,VWA3B:p.R557L,WBP11:p.P227fs,WDR52:p.G612C,WDR59:p.R837S,WDR75:p.P287Q,WDR88:p.G100W,ZCCHC5:p.G335W,ZFHX4:p.L811F,ZFHX4:p.T1663N,ZFHX4:p.H2511Q,ZFP14:p.Q17L,ZIC1:p.A112E,ZNF154:p.T408N,ZNF223:p.G23W,ZNF295:p.S732C,ZNF322:p.K106N,ZNF385D:p.T226S,ZNF454:p.S190I,ZNF492:p.P392H,ZNF521:p.G640C,ZNF521:p.P270H,ZNF536:p.G186C,ZNF536:p.G663W,ZNF644:p.G21W,ZNF716:p.H263L,ZNF71:p.V411L,ZNF782:p.G484W,ZNF831:p.Q617K,ZNF98:p.C492F,及びZSWIM2:p.S214Yからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも33.42%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項33に記載の医薬組成物。
- (a)前記対象の集団はLUSCに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、PIK3CA:p.E545K,TP53:p.R158L,KRTAP5−5:p.GCG47del,NFE2L2:p.E79Q,CDKN2A:p.D108Y,DHX9:p.V40G,MAFA:p.207_208HH>H,NFE2L2:p.R34Q,PBX2:p.Y262F,PIK3CA:p.E542K,TP53:p.R273L,TP53:p.C242F,TP53:p.R175G,TP53:p.Y163C,TP53:p.V157F,AICDA:p.R131G,ALPK2:p.D53N,ANKFN1:p.M280I,ARPC1A:p.F212L,ASXL2:p.S1081L,C1orf74:p.D254N,C3orf30:p.D227E,CCDC121:p.W397L,CHN2:p.I43M,CLEC4C:p.R179L,CLN3:p.G206S,CNTN5:p.T178N,COL12A1:p.G2753C,CPS1:p.T855K,CSMD3:p.T1094K,CSMD3:p.Q691K,DDX11:p.R167T,EGFR:p.L861Q,EME1:p.D570H,EP300:p.D1399N,ESYT3:p.S574F,FAM135B:p.L648M,FAM135B:p.Q285H,FAM47A:p.G372W,FBXW7:p.R505G,FGFR3:p.S249C,GALNT13:p.G358C,GNL3L:p.K20N,GPC5:p.R347L,HCN1:p.A714S,HCN1:p.R659L,HCN1:p.G499V,HCN1:p.P326T,HERC2P3:p.A803V,HEXDC:p.T482P,HIST1H3B:p.E74K,HIST2H2BE:p.G54D,IFNA10:p.V79A,IL7R:p.S54L,INADL:p.P1340A,ISX:p.C2F,ITGAX:p.R685H,ITPR1:p.E1883Q,KCNN3:p.80_81insQQ,KEAP1:p.G480W,KEAP1:p.R470C,KEAP1:p.V155F,KIAA1751:p.L63F,KIAA2022:p.C345F,KIR3DL2:p.K229E,KLF5:p.E419Q,LAMA4:p.M1293I,LMLN:p.G199C,LRP2:p.A516V,LRRC66:p.F458L,LSG1:p.R517L,LUM:p.R310L,MB21D2:p.Q311E,MCHR1:p.S306F,MKRN3:p.G270V,MUC16:p.N11594K,NFE2L2:p.G81S,NFE2L2:p.G31A,NFE2L2:p.L30F,NFE2L2:p.D29H,OR2B11:p.G10V,OR2T2:p.F13V,OR4K2:p.C254F,OR51F2:p.R67P,OR51S1:p.R159Q,OR5D18:p.T271K,OR8H2:p.L166F,OR8J3:p.S160L,OR8K3:p.K235N,PCDHB1:p.N568K,PHIP:p.I1681M,PIK3CA:p.E726K,PIK3CA:p.H1047R,PLCE1:p.G439C,PRSS57:p.E39Q,PYHIN1:p.G148A,RANBP6:p.I984L,RBMXL1:p.G305C,REG1B:p.M67I,RGS6:p.W366L,RNF5:p.T136I,RP1:p.S1771L,RRP15:p.L214F,RYR2:p.E711K,SAMD3:p.Q206H,SLITRK3:p.R214L,SON:p.S908L,SP4:p.E11del,STK11:p.G279fs,TARBP1:p.L782V,TBCD:p.R476C,TMPRSS11F:p.R274Q,TP53:p.R337L,TP53:p.E271K,TP53:p.R267P,TP53:p.G245V,TP53:p.Y234C,TP53:p.Y220C,TP53:p.H214R,TP53:p.H193L,TP53:p.H179L,TPTE:p.M541I,TRIM7:p.L332I,TTN:p.T32425M,ZFP36L2:p.D240N,ZNF208:p.H883Q,ZNF48:p.R235H,ZNF626:p.K473R,ZNF676:p.P43T,ZZZ3:p.R162Qからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも7.87%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項35に記載の医薬組成物。
- (a)前記対象の集団はOVに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、TP53:p.R273H,TP53:p.Y220C,TP53:p.R248Q,TP53:p.R175H,TP53:p.R273C,TP53:p.I195T,TP53:p.R248W,TP53:p.R282W,TP53:p.C176Y,TP53:p.V157F,TP53:p.S241F,TP53:p.H179R,TP53:p.G245S,TP53:p.H193R,ADCY2:p.V888I,B2M:p.M1V,BAP1:p.R227C,CYP4A11:p.V185F,DNAH5:p.R3197Q,GART:p.K807fs,GRIN2B:p.R519Q,HRNR:p.M1fs,KLHL29:p.L716fs,KRAS:p.G12V,MGA:p.R2435Q,MYO3A:p.N525S,NPAS2:p.Q201R,NRAS:p.Q61R,PDAP1:p.K55fs,PGAP1:p.F565C,TP53:p.S315fs,TP53:p.C275Y,TP53:p.R273L,TP53:p.V272M,TP53:p.G266V,TP53:p.G266R,TP53:p.D259Y,TP53:p.P250L,TP53:p.G245D,TP53:p.G245V,TP53:p.G244C,TP53:p.C238fs,TP53:p.Y236C,TP53:p.Y234C,TP53:p.V216M,TP53:p.S215R,TP53:p.Y205C,TP53:p.L194R,TP53:p.P191del,TP53:p.Y163C,TP53:p.A159V,TP53:p.K132N,TRPC7:p.D210V,UXS1:p.V100L,WNT11:p.C344Y,及びZNF295:p.E885Aからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも22.78%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項37に記載の医薬組成物。
- (a)前記対象の集団はREADに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、KRAS:p.G12V,TP53:p.R273H,KRAS:p.A146T,KRAS:p.G12D,TP53:p.R175H,AKAP9:p.L3482I,APBA1:p.E624K,BAG5:p.D439N,C17orf97:p.E230D,CDH23:p.F177L,CERS3:p.E95D,DNAH5:p.R982H,ERBB2:p.V842I,GABRB3:p.D500N,KRAS:p.G13D,KRAS:p.G12C,KRAS:p.G12S,LRP6:p.R675Q,MACF1:p.F722L,MBOAT2:p.R43Q,MYO1D:p.E246K,NLRC4:p.E409K,NRAP:p.E327K,NRAS:p.Q61K,PCDH15:p.R1552I,PIK3CA:p.N345K,PIK3CA:p.E545K,POLE:p.S459F,PPP2R2B:p.P326L,SMAD4:p.R361H,TP53:p.R248W,ZFP2:p.R150I,及びZNF563:p.K26Nからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも20.51%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項39に記載の医薬組成物。
- (a)前記対象の集団はSKCMに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、BRAF:p.V600E,NRAS:p.Q61R,NRAS:p.Q61K,HSD17B7P2:p.N175S,BRAF:p.V600K,DISP1:p.G732L,IDH1:p.R132C,NRAS:p.Q61L,MUC16:p.P5119S,RAC1:p.P29S,WASH3P:p.G175S,AGAP9:p.M248V,C15orf23:p.S24F,DNAH5:p.D3236N,SPTLC3:p.R97K,TMC5:p.R276C,CFB:p.R314M,FRG1B:p.A50P,INMT:p.S212F,LOC649330:p.G93E,MAP2K1:p.P124S,RGS7:p.R44C,STK19:p.D89N,ADAM30:p.G97L,ARL16:p.G6R,ARMC4:p.E22K,BRAF:p.K601E,CAPN13:p.P405S,CD1C:p.R89C,CLCC1:p.P406Q,CNTN5:p.S379F,DNAH5:p.R742Q,EEF1B2:p.S43G,FRG1B:p.I59V,GABRG1:p.E205K,IARS2:p.R832C,IL32:p.D218fs,ISX:p.R86C,KLHDC7A:p.E635K,NAP1L4:p.P285Q,NBPF10:p.Q908E,OR2A5:p.S71L,OR4E2:p.R226Q,OR4M1:p.G41E,OR4M2:p.S268F,OR4N2:p.G41E,OR51B2:p.S163L,PCDHGC5:p.R293C,PCLO:p.R4133C,PHGDH:p.G173L,POTEG:p.D51N,PPP6C:p.R301C,PRAMEF11:p.C84S,PSG9:p.E404K,PTPRB:p.D1560N,RNF152:p.P95S,SPAG16:p.P488S,SPATA8:p.E18K,TAF1A:p.R172M,TCEB3C:p.E308K,THSD7B:p.E126K,TTN:p.E12129K,XIRP2:p.D2439N,及びZNF831:p.R1393Qからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも90.91%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項41に記載の医薬組成物。
- (a)前記対象の集団はUCECに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、RPL22:p.K15fs,PTEN:p.R130G,PTEN:p.R130Q,KRAS:p.G12D,KRAS:p.G12V,PIK3CA:p.H1047R,PIK3CA:p.R88Q,PIK3CA:p.E545K,PTEN:p.V317fs,FGFR2:p.S252W,PIK3CA:p.E542K,CTNNB1:p.S37F,POLE:p.P286R,PPP2R1A:p.P179R,CTNNB1:p.S37C,KRAS:p.G13D,CTNNB1:p.D32N,CTNNB1:p.S33F,CTNNB1:p.G34R,KIAA2026:p.R574C,LIMCH1:p.R806fs,PIK3CA:p.H1047L,ALPK2:p.K523fs,CTNNB1:p.S33C,FBXW7:p.R505C,HPD:p.R284fs,KRAS:p.G12A,PIK3CA:p.R93Q,POLE:p.V411L,TP53:p.R248W,ABCA11P:p.R385I,ABI1:p.K445N,ACSM2B:p.K195N,APOB:p.F3102L,ASCC3:p.R136Q,C12orf4:p.R335Q,CCDC132:p.R838C,CHD4:p.R975H,CSDE1:p.R220C,CTNNB1:p.D32Y,CTNNB1:p.S33Y,CTNNB1:p.T41I,EXOC1:p.R588C,FBXW7:p.R465H,FGFR2:p.N549K,FUBP1:p.R430C,GEN1:p.S509L,IK:p.E90fs,KIF20B:p.E54K,MAX:p.H28R,MBOAT2:p.R43Q,METTL14:p.R298P,MFGE8:p.D170N,MS4A8B:p.S3L,NSMCE1:p.D244N,OXR1:p.E122K,PCDH19:p.E530K,PIK3CA:p.R108H,PIK3CA:p.N345K,PIK3CA:p.C420R,PIK3CA:p.Q546P,PIK3CA:p.Q546R,PTEN:p.R130L,RBL2:p.E127K,RXFP1:p.S223Y,SF3B1:p.R957Q,SLC20A1:p.P328fs,SOX17:p.S403I,TNS1:p.Q659del,TP53:p.R273H,TP53:p.R273C,TP53:p.R248Q,TTN:p.D16823N,TXNL1:p.R234C,ZFHX3:p.R1893fs,ZNF180:p.R625I,ZNF257:p.R392I,ZNF354B:p.D609N,ZNF43:p.R280C,ZNF709:p.R468I,ZNF765:p.S254L,ABCA5:p.R1476Q,ACVR1:p.R206H,ADAD1:p.S11L,ADAM9:p.R256Q,ADD3:p.E570K,ADGB:p.S1124L,AGXT2:p.R502C,AMBN:p.S225Y,ANKDD1A:p.R24H,ARHGEF33:p.R46I,ATP10B:p.L1304I,ATP2C1:p.E724K,ATP9A:p.R290Q,ATR:p.R1814fs,AVL9:p.F34L,BMPER:p.R241Q,BTN3A2:p.E153K,C14orf118:p.R279I,C14orf166B:p.F230L,C3orf23:p.R217C,C3orf62:p.R185Q,CACNA1C:p.S710L,CAGE1:p.E539K,CARD10:p.KE272del,CCDC144A:p.S1264L,CCDC168:p.D5020Y,CCDC36:p.R209I,CD55:p.E156K,CEP44:p.S253L,CIITA:p.E728K,CREBBP:p.P2094L,CTNNB1:p.S37A,CTTNBP2:p.S420L,DCT:p.R532Q,DIAPH2:p.E121K,DLG2:p.S624L,DNAH10:p.R1888Q,DNAH14:p.R1367C,DNAH7:p.R2961Q,DNAH8:p.R1347H,DNAJC13:p.E1248K,DNMT1:p.E51K,DST:p.S1767Y,DYNC2H1:p.E883D,EMR1:p.R631Q,EPHX4:p.R282Q,ERCC6L2:p.L445I,F10:p.E117K,FAM155B:p.E158K,FAM83B:p.R206Q,FARP1:p.S383L,FAT3:p.A4159T,FBXW7:p.R689W,FBXW7:p.R465C,FBXW7:p.G423V,FN1:p.R290C,FZD6:p.R416Q,GABRA3:p.R73H,GABRA4:p.R460Q,GALNTL2:p.E395K,GFAP:p.A233T,GGA2:p.A63V,GIGYF2:p.R227H,GNPTAB:p.R1189Q,GPR112:p.S1283Y,GPR98:p.R4142W,GRIA3:p.S646Y,GRM6:p.E363D,HMCN1:p.S133Y,HSPA4L:p.R483C,HTR2A:p.S219L,INTS7:p.R940C,INTS7:p.R106I,ITM2C:p.E167K,JAKMIP2:p.R283I,KCND3:p.S438L,KCNS2:p.D211N,KDM1B:p.F361L,KIAA0556:p.L330I,KIAA1147:p.A149V,KIF23:p.R150Q,KIF27:p.K925N,KIF9:p.R594Q,KLHL13:p.E213K,KLHL28:p.E33K,LIN9:p.R183W,LRBA:p.E2103K,LRP2:p.R2432I,MAGI2:p.L450M,MC5R:p.A109T,MEGF10:p.S1053L,MKI67:p.T1664fs,MKLN1:p.F485L,MMRN1:p.F917L,MSH4:p.E730K,MTOR:p.S2215Y,MUC7:p.S336L,MYBPC2:p.R646H,N4BP2L2:p.R506C,NAPSA:p.R121Q,NCOA7:p.E369D,NCR1:p.R258W,NEK11:p.R374Q,NHEJ1:p.R109Q,NNMT:p.E233K,NOTCH4:p.15_16LL>L,NPY1R:p.A371T,NRAS:p.Q61R,OGDHL:p.R57C,OMA1:p.R445Q,OPRM1:p.R462C,OR4C12:p.F248L,OR5AK2:p.K89N,OSBPL6:p.R577Q,PCDHAC2:p.K138N,PCDHB12:p.R289C,PCDHGC5:p.A70T,PIK3CA:p.R38H,PIK3CA:p.E39K,PIK3CA:p.E110del,PIK3CA:p.K111E,PIK3CA:p.Q546K,PIK3CA:p.M1043V,PIK3CA:p.M1043I,PLA2G3:p.R201Q,PLXNA1:p.E1295K,PON1:p.R306Q,POTEE:p.R303I,POTEF:p.K674N,PPP2R1A:p.S256F,PPP2R3B:p.F310L,PRAM1:p.A268T,PREX1:p.E1246K,PRKCQ:p.A324V,PTEN:p.R130P,PVRL4:p.A358T,RAI2:p.S385Y,RBM39:p.T353I,RELN:p.F2722L,RFPL1:p.R148Q,ROBO2:p.D1018N,ROS1:p.R245I,RPS6KA6:p.S394Y,RSBN1:p.E572K,RYR1:p.A2576T,SACS:p.R2906Q,SCAPER:p.R366Q,SELP:p.R429W,SENP7:p.S673Y,SEPHS1:p.E13K,SFRP4:p.R232Q,SGK1:p.K367del,SIX1:p.E191K,SLC10A7:p.S261L,SLC12A2:p.R828Q,SLC16A14:p.R495Q,SLC7A2:p.R322W,SMCR8:p.E175K,SOS1:p.N233Y,SPOP:p.E50K,STRN3:p.K218N,STXBP6:p.D92N,SULT1E1:p.R77Q,SUN3:p.L124I,SUSD1:p.R343C,SYNM:p.R516Q,TAF1:p.R843W,TDRD3:p.R322Q,THADA:p.S1941L,TLN2:p.S208L,TMEM161B:p.R315Q,TMPRSS3:p.R16Q,TP53:p.Y220C,TPTE:p.S423L,TRANK1:p.E846K,TRPC5:p.S490L,TRPM3:p.R429W,TSSK1B:p.E301K,TTLL7:p.R751H,TTN:p.S20317L,TTN:p.E6404K,TTN:p.R4434Q,TTN:p.R2506Q,UGT8:p.E102K,USF1:p.R52Q,USP16:p.R455Q,USP25:p.R873H,USP33:p.R36Q,VPRBP:p.R802Q,VPS13B:p.R692Q,WDR65:p.F110C,YTHDC2:p.E185K,ZFYVE1:p.R266Q,ZKSCAN1:p.R541fs,ZNF117:p.R157I,ZNF180:p.R569I,ZNF195:p.R59Q,ZNF254:p.K179N,ZNF263:p.R510I,ZNF333:p.R554Q,ZNF354B:p.R402I,ZNF442:p.R309Q,ZNF454:p.R376I,ZNF485:p.R374I,ZNF488:p.R206Q,ZNF559:p.E284K,ZNF594:p.R287I,ZNF611:p.R390I,ZNF645:p.R154C,ZNF649:p.R338Q,ZNF649:p.R198I,ZNF674:p.R405I,ZNF675:p.R220I,ZNF678:p.R564I,ZNF732:p.R354I,ZNF780A:p.R466Q,ZNF823:p.R547I,ZNF836:p.R854I,ZNF836:p.R630I,ZNF841:p.R757I,及びZNF98:p.R370Iからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも67.74%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項43に記載の医薬組成物。
- (a)前記対象の集団はACCに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、ZFPM1:p.EPL444del,GARS:p.P42A,ZNF517:p.V349A,LRIG1:p.L24V,CCDC102A:p.R96W,OPRD1:p.C27F,SOWAHA:p.R124P,LACTB:p.M5L,TOR3A:p.F13L,ZFPM1:p.E444fs,ZNF787:p.D367del,LRIG1:p.L26V,IRX3:p.L422P,TRIOBP:p.H1300R,TUBA1C:p.L146F,ZFPM1:p.P445fs,ZFPM1:p.446_447LA>P,TPO:p.S398T,USP42:p.R779P,ERCC2:p.D312N,GLTPD2:p.D209E,OTOP1:p.LLW104del,RINL:p.P402L,AMDHD1:p.S3G,ASPDH:p.Q266R,KCNK17:p.S21G,TMEM247:p.Q128E,MUC5B:p.D682G,OBSCN:p.R4516W,FAM184B:p.R784W,SEMA5B:p.V840D,ZNF598:p.E25G,ADAD2:p.G44E,C1orf106:p.R538C,ZAR1:p.Q42H,PANK2:p.G126A,PODXL:p.28_30PSP>P,SALL3:p.L593V,THEM4:p.L17R,C2orf81:p.T315P,CLDN23:p.V210M,FAM109A:p.GGG156del,FPGS:p.I22V,HHIPL1:p.V692A,MUC5B:p.M2869T,PLEC:p.R1386Q,SYT8:p.R373W,TAF5:p.S130A,TMEM189−UBE2V1:p.N6D,UQCRFS1:p.S6A,B3GNT6:p.L316fs,CCDC105:p.P499T,CLIC6:p.Q298E,IDUA:p.T374P,NOTCH2:p.C19W,RGS9BP:p.A96S,RREB1:p.G783V,SP8:p.G165del,WDR34:p.W60G,C19orf10:p.G12R,CELSR2:p.16_17insP,FAM75C1:p.71_71H>HLVSQRH,GPRIN2:p.R446H,KBTBD13:p.A81V,OGFR:p.S557T,PODXL:p.30_30P>PSP,BHLHE22:p.L62Q,C4orf32:p.G32E,C5orf65:p.Q245R,KNDC1:p.V806D,KRTAP10−6:p.49_49P>PSCCAP,LRP11:p.P92R,MAP1S:p.S411C,NOL9:p.S58A,RASIP1:p.R601C,RGMB:p.S63R,SARM1:p.R23P,TSC22D2:p.A419T,ZNF628:p.T230A,ZNF814:p.A337V,AATK:p.A541T,BTBD11:p.G265A,CRIPAK:p.C143R,KCTD3:p.F9V,KRT8:p.S59A,MUC5B:p.S681G,NCOR2:p.1846_1847insSSG,OGFR:p.E556K,APOE:p.C130R,C10orf95:p.A85S,C13orf33:p.R59G,CRIPAK:p.C174R,FAM18B2:p.C51Y,GLI3:p.P998L,GLTSCR2:p.Q389R,HECTD2:p.P19A,IRF2BPL:p.123_125QQQ>Q,MEX3C:p.179_182AAAA>A,NEFH:p.EE658del,RNF149:p.S9G,RNF222:p.A133T,SEZ6L2:p.R74P,TNIP2:p.R73G,ARRDC4:p.T79A,B3GNT6:p.P330fs,BAG1:p.G45R,C22orf26:p.P28L,CHDH:p.E40A,COQ2:p.V66L,CTGF:p.H83D,DLEU7:p.A83V,EPPK1:p.D2378H,FAM86C1:p.R30P,FZD1:p.93_94insP,GPRIN2:p.V241M,GPX1:p.11_13AAA>A,HES3:p.P96T,JMJD4:p.A11V,KANK3:p.R359H,LPPR2:p.A186S,NEFH:p.665_666insEE,NOM1:p.R24G,RNF39:p.G263C,SCRT1:p.S133A,SNED1:p.L1228P,TTLL11:p.122_123insKA,ZCCHC3:p.A159del,ZNF219:p.QP233del,ASB16:p.T249A,ASB2:p.H515P,ATP9B:p.S39G,AVL9:p.G7fs,C17orf96:p.L63V,C19orf29:p.A499V,CRB2:p.T1110M,CRIPAK:p.P173R,CRIPAK:p.I190L,CSGALNACT2:p.L362F,CTBS:p.LAL31del,CTNNB1:p.S45P,DMRT1:p.S45T,DOK7:p.G461D,FBRSL1:p.A836V,FEZ2:p.P50L,FRG1:p.S169N,HSD17B1:p.G313S,IBA57:p.S130R,KIF1A:p.E917D,KRTAP9−1:p.160_160Q>QPSCGSSCCQ,LURAP1L:p.55_56insGGG,NMU:p.A19E,NMU:p.A18E,NOXA1:p.D6E,NPTX1:p.G100D,PLIN5:p.R306W,TBP:p.95_96insQ,TMEM200C:p.S498G,TNXB:p.V706fs,VARS:p.P51S,ZC3H12D:p.P405S,及びZZEF1:p.V30Aからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも20%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項45に記載の医薬組成物。
- (a)前記対象の集団はCESCに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、PIK3CA:p.E545K,PIK3CA:p.E542K,MAPK1:p.E322K,EP300:p.D1399N,ERBB2:p.S310F,ERBB3:p.V104M,KRAS:p.G12D,ANKRD12:p.E721Q,ANKRD36:p.M1144T,MICA:p.G318fs,PIK3CA:p.E726K,PTEN:p.R130Q,ABCD1:p.S606P,ACTL7B:p.E211K,ADAM21:p.F129C,ADAMTS12:p.P1053A,AKT1:p.E17K,ANKLE1:p.V643L,ANO3:p.M956I,AOAH:p.R326T,APOD:p.S115L,ASCC1:p.H207Y,ATM:p.S800F,AURKA:p.S387L,BAG5:p.M286I,C12orf43:p.E28Q,C16orf3:p.G65S,C3orf70:p.S6L,C4orf21:p.E800Q,CALB2:p.K60N,CALCB:p.R81T,CCDC152:p.E153Q,CCDC53:p.R58C,CDC27:p.P242S,CFHR5:p.R441H,CLOCK:p.L123fs,CMYA5:p.E2733K,CNTRL:p.P185S,CSHL1:p.R117Q,CSMD3:p.H952Y,CTNNB1:p.D32G,CTSH:p.E254Q,DHPS:p.F49L,DMPK:p.R44H,DNAH14:p.F622fs,DNAH3:p.E3367Q,DNAH8:p.E587D,DNASE1L1:p.D212N,ECE2:p.D254N,FAM71B:p.H445D,FAM73A:p.G23V,FAS:p.E261K,FBXW7:p.R505G,FBXW7:p.R465C,FEZF2:p.E82K,FKBPL:p.E161Q,FMNL1:p.E927Q,GPATCH3:p.E275Q,GPR142:p.R304T,GPRIN2:p.T100P,GRAMD2:p.I123M,HERC2:p.S329F,HGF:p.G229A,HIF3A:p.A72T,HIST1H1B:p.K188N,HIST1H2AL:p.R30P,HIST2H2AC:p.R30P,HLA−C:p.N104K,HLA−DPB1:p.G114fs,HRNR:p.G2539S,INVS:p.R799K,JPH3:p.Q433H,JUP:p.S627L,KIAA1211:p.R308fs,KIAA1211:p.E309fs,KLK2:p.E161K,KRAS:p.G13D,KRAS:p.G12V,LIN9:p.E231K,LOC151174:p.P90S,LRRC37A3:p.A406D,LRTM2:p.L176V,MEPE:p.S30T,MUC12:p.R2634C,MUC4:p.S2936L,MYOM2:p.D988N,NFE2L2:p.D29H,NOTCH2:p.R2298W,NPIPL1:p.P250L,NR5A2:p.E80K,NYAP2:p.R197Q,OBSL1:p.E1642K,OR13C2:p.L9V,OSBP:p.Q721H,PAOX:p.H107Y,PDILT:p.E500K,PIAS3:p.D460N,PLEKHO2:p.E351Q,PNRC1:p.R73C,PPP4R1:p.L597F,PREP:p.F469L,PRKDC:p.Q3568E,PSME3:p.R231W,RANBP6:p.R915W,RCAN2:p.D440N,RNPC3:p.E116fs,SDHAP1:p.H66Y,SDHAP2:p.S37fs,SERPINA3:p.K158N,SERPINA4:p.R98C,SF1:p.R255W,SGSM1:p.E818K,SIM1:p.V213M,SLC10A4:p.F281L,SLC25A5:p.I79F,SLC35G2:p.K62fs,SLC4A9:p.R617C,SLCO2A1:p.M479I,SND1:p.Q38E,SPATA17:p.R72K,SRSF12:p.S150C,TADA2B:p.E67K,TCTEX1D2:p.S74L,TEDDM1:p.M166I,TEX15:p.E1652Q,TMC2:p.E92D,TMEM131:p.E1319Q,TNKS2:p.T619fs,TNS1:p.Q659del,TP53:p.E285K,TRAF3:p.S9F,TRIM61:p.K98N,TRPM1:p.M996I,TUFT1:p.L101F,U2AF1:p.S34F,UNC93B1:p.V498M,USP4:p.L259V,VCAN:p.S1308C,WDR17:p.P278S,ZBED4:p.S385L,ZEB2:p.E1094K,ZFYVE9:p.M1147I,ZNF16:p.R452W,ZNF677:p.R131T,及びZSWIM4:p.E407Kからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも23.71%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項47に記載の医薬組成物。
- (a)前記対象の集団はCRCに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、KRAS:p.G12D,KRAS:p.G12V,BRAF:p.V600E,KRAS:p.G13D,TP53:p.R175H,PIK3CA:p.E545K,FBXW7:p.R465H,KRAS:p.A146T,PIK3CA:p.H1047R,TP53:p.R248W,CDC27:p.D555E,SMAD4:p.R361H,TP53:p.R273H,KRAS:p.G12C,NRAS:p.Q61K,ERBB2:p.V842I,ERBB3:p.V104M,FBXW7:p.R465C,PIK3CA:p.R88Q,PIK3CA:p.E542K,TP53:p.R273C,TP53:p.G245S,AXIN2:p.G665fs,C16orf45:p.T106N,C20orf26:p.R1088Q,DNMT1:p.E432K,FBXW7:p.R505C,HLCS:p.E362K,HPSE2:p.K58N,KIF14:p.R598Q,KIF18A:p.R17C,KIF20B:p.E991K,KLHL5:p.R326C,KLK2:p.P57T,KRAS:p.G12A,KRAS:p.G12S,LPHN3:p.R1183Q,LRP6:p.R675Q,MYH8:p.R1048Q,NRAP:p.E327K,NRAS:p.G12C,PIK3CA:p.N345K,POSTN:p.R508C,PPP2R1A:p.R183W,PTEN:p.R130Q,RAF1:p.S257L,SDK1:p.T1181M,SGSM1:p.F1117L,TCF7L2:p.R482fs,TP53:p.R282W,TRIM23:p.R289Q,UGT8:p.E102K,ZNF491:p.R343Q,A2M:p.R732Q,AADACL4:p.A266T,ABCA8:p.E1158K,ABCA8:p.R842Q,ABCA8:p.A696T,ABCB8:p.R345H,ACACA:p.R1731C,ACADM:p.F48C,ACOT9:p.R50Q,ACPP:p.R105Q,ACTL7B:p.R354H,ACTL9:p.R331H,ACVR1:p.S290L,ADAM30:p.S314Y,ADAM32:p.R559Q,ADAMTS16:p.D817N,ADAMTS4:p.R156W,ADCY5:p.R661H,AGMAT:p.V313M,AGPAT4:p.A212T,AKAP12:p.E1282K,AKAP9:p.L3482I,ALB:p.S294L,ALDH1L1:p.A870T,ALG2:p.S302Y,AMOTL1:p.R676Q,AMPD1:p.K502N,AMPH:p.R292W,ANKRD6:p.R479C,APBA1:p.K730N,APBA1:p.E624K,APC:p.E847fs,APC:p.F1354fs,APC:p.M1413fs,APOB:p.R3136C,APOB:p.A43V,APPL1:p.R668W,AQPEP:p.A309T,ARF4:p.R149H,ARFGEF1:p.D1632N,ARHGAP32:p.E1253K,ARHGAP36:p.R128C,ARHGAP36:p.A147V,ARHGAP5:p.D890fs,ARNTL:p.T395M,ARPP21:p.R338H,ARSG:p.V131I,ASCC3:p.R1197Q,ATP10D:p.R311H,ATP6V0A4:p.R191Q,ATP9B:p.R265Q,AXDND1:p.E930D,AXIN2:p.W663fs,B2M:p.L13fs,B3GALNT1:p.R145Q,BACH1:p.R538Q,BAG5:p.D439N,BBOX1:p.F176V,BCL2L11:p.R91Q,BCL7A:p.T52M,BCLAF1:p.R37fs,BEND5:p.R198C,BICD2:p.R162H,BLVRA:p.S44L,BMP3:p.R344W,BNC2:p.R512W,BRPF1:p.R66C,BRWD3:p.R787C,BTBD7:p.S436L,BUB1B:p.F996L,BZRAP1:p.V1627I,C11orf30:p.R1111C,C14orf101:p.E295K,C14orf102:p.D115N,C14orf105:p.R100I,C15orf2:p.V488I,C15orf33:p.D340N,C16orf87:p.R151I,C1RL:p.L351fs,C22orf40:p.P32fs,C3orf39:p.R333W,C5orf30:p.D4N,C5orf4:p.R114Q,C6orf170:p.K724T,C7orf63:p.A10T,CACHD1:p.S720Y,CACNA1A:p.T665M,CACNA2D3:p.A332T,CACNB2:p.R608H,CACNG3:p.V134I,CACNG3:p.A138V,CACNG5:p.G121R,CADM1:p.S190L,CADPS:p.A1073T,CAPRIN2:p.E13K,CARD11:p.R423Q,CASC1:p.R54Q,CASP14:p.R5W,CBFB:p.E152K,CC2D2A:p.R1284C,CCDC18:p.K615N,CCDC60:p.R230H,CCDC81:p.R259I,CCDC88C:p.P1851fs,CCKBR:p.V236M,CD101:p.D283Y,CD101:p.R594Q,CD180:p.N228T,CDC14B:p.R375C,CDCA7L:p.P405fs,CDH10:p.E349K,CDH12:p.D674N,CDH20:p.A134V,CDH23:p.F177L,CDH2:p.D547Y,CDH9:p.F523L,CDK16:p.R108C,CEACAM5:p.L640I,CEP152:p.E21K,CERS3:p.E95D,CHD4:p.R975H,CHD5:p.A801T,CIZ1:p.V668A,CLEC18A:p.R423H,CLTCL1:p.R481W,CMAS:p.R110Q,CNRIP1:p.R102W,COBLL1:p.K732N,COL14A1:p.R1082I,COL17A1:p.P1004L,COL4A6:p.L550I,COL6A3:p.D2792N,COPB1:p.R425C,CORO2A:p.*526R,COX15:p.L86I,CSMD1:p.S781Y,CTCFL:p.E423K,CTDNEP1:p.E126K,CTTNBP2:p.R164C,CYP4B1:p.E434D,DACH2:p.R539C,DBC1:p.V216I,DBF4B:p.S254Y,DCHS2:p.F2149L,DCLK2:p.S549Y,DDI1:p.R275Q,DENND4A:p.P357H,DENND4C:p.R1081Q,DHTKD1:p.R410Q,DISP1:p.R763C,DKK2:p.R230H,DKK4:p.R203Q,DLC1:p.A350V,DLC1:p.E222D,DMD:p.R3195H,DNAH5:p.R982H,DNAH5:p.R224Q,DNAH9:p.D1547N,DNAJC24:p.E61K,DNM1:p.A251T,DNMT1:p.E1531Q,DNMT3B:p.R92W,DOCK10:p.A1830V,DOCK1:p.E864K,DOCK2:p.G170R,DOCK3:p.R1183C,DOCK5:p.E177K,DOK5:p.R274W,DPP8:p.G165R,DPY19L1:p.F378L,DUOX2:p.F880L,DVL2:p.A601fs,EBAG9:p.E187K,EBF3:p.G255fs,EDNRB:p.L450R,EGR2:p.R390H,EHD3:p.E44K,EIF2C1:p.R139Q,ELF3:p.F305fs,ELMOD2:p.T141M,EMR2:p.S75L,ENAM:p.R373H,ENOX2:p.R356W,ENTPD7:p.E327K,EPG5:p.D369N,EPHB2:p.R392H,ERCC6:p.V780I,ERCC6L:p.R505Q,ERRFI1:p.A421T,ESCO1:p.R300Q,ETV6:p.R369W,F8:p.S2269Y,FAM123B:p.F173fs,FAM135B:p.R884H,FAM169B:p.K165N,FAM170A:p.E56K,FAM171B:p.D459N,FAM181A:p.R109H,FAM5B:p.R402C,FBXO11:p.A432V,FBXW7:p.R689W,FBXW7:p.S582L,FBXW7:p.R14Q,FGF14:p.A236V,FHDC1:p.R254W,FHOD3:p.A225T,FHOD3:p.E813K,FMO3:p.F510L,FNDC1:p.R652H,FOXK1:p.R354W,FOXN3:p.P96fs,FPGT−TNNI3K:p.R455H,FZD3:p.D367N,GABRA4:p.R460Q,GABRA5:p.S126N,GABRB3:p.D500N,GALNTL5:p.R262I,GJA1:p.R362Q,GLRA3:p.L454I,GLRA3:p.F132L,GOLGA4:p.Q1536H,GP2:p.S41L,GPC6:p.A214T,GPLD1:p.R717Q,GPR125:p.R113Q,GPR156:p.F754L,GPR158:p.D566N,GPR21:p.R216H,GPR61:p.A62T,GPR98:p.R4142W,GPRC5A:p.V30I,GRAP2:p.E69D,GRIA1:p.R218C,GRIA2:p.R845Q,GRM7:p.R679Q,GTF3A:p.K306N,HAO1:p.R172C,HARS2:p.R168H,HBB:p.F42L,HCN4:p.R525H,HDAC5:p.A1044T,HGF:p.S467Y,HIPK4:p.R280H,HLA−DMA:p.E84K,HMG20A:p.E248D,HPS3:p.S468L,HRSP12:p.R120Q,HS3ST1:p.E287K,HTR3B:p.R236C,HTR5A:p.R152C,HTT:p.D1548N,HYDIN:p.R1187C,HYDIN:p.R939Q,HYDIN:p.R451Q,HYOU1:p.R158C,IFT172:p.A944V,IGJ:p.R77Q,IL17RA:p.Q803fs,IL1RAPL2:p.T647M,IL3:p.A90T,IL5RA:p.L47I,INPP5D:p.R523Q,INPP5K:p.R263C,IRAK3:p.R267Q,IREB2:p.R419Q,ITGA4:p.T673M,ITGA4:p.F900L,ITIH5:p.A912T,ITK:p.E196K,JAG1:p.A462T,JAK1:p.V310I,KAL1:p.V303I,KBTBD8:p.V549I,KCNA3:p.A415V,KCND3:p.S438L,KCNMB4:p.F209L,KCTD20:p.L314fs,KDELC1:p.L447I,KIAA0528:p.R181Q,KIAA0556:p.R1082W,KIAA1109:p.S4937Y,KIAA1804:p.V474M,KIAA1804:p.R477W,KIF16B:p.R145Q,KIF26B:p.A1114V,KPNA4:p.R29Q,KRAS:p.K117N,KRAS:p.Q61L,KRAS:p.Q61K,KRT6B:p.L197P,L1CAM:p.T186M,LALBA:p.A41T,LAMA4:p.A558V,LBX1:p.R176W,LPAR4:p.R145Q,LRP1B:p.K2623N,LRP2:p.R3043C,LRP2:p.S737L,LRRC18:p.R218W,LRRC31:p.K23T,LRRC7:p.R1389H,LZTS2:p.P100fs,MACF1:
p.S292L,MACF1:p.F722L,MAEL:p.R345C,MAGEE1:p.V380M,MAGI1:p.R1198C,MAP1B:p.E2046D,MAP2:p.K530N,MAP2K4:p.R287H,MAP3K4:p.R275Q,MAP7D2:p.R487C,MAPK8IP1:p.L217fs,MBOAT2:p.R43Q,MCF2L2:p.R926Q,MECOM:p.R969C,METTL16:p.R200Q,METTL21A:p.R174Q,METTL6:p.F56L,MFF:p.R162C,MFSD5:p.R280Q,MIA3:p.Q356H,MMAA:p.R326C,MORC1:p.D113Y,MORC2:p.R740H,MPDZ:p.L804I,MR1:p.S46L,MRPL47:p.L234I,MS4A8B:p.S3L,MSH4:p.K464N,MSH6:p.T1085fs,MSH6:p.R1095H,MUC16:p.R8606H,MYH13:p.D311N,MYH7:p.R1689C,MYO1D:p.E246K,MYO3A:p.N525H,MYO6:p.D1180N,MYO9A:p.R2179Q,MYO9A:p.R167Q,MYOZ2:p.E251K,MYT1:p.E226K,NAA25:p.S807Y,NCAM1:p.R474W,NCOA4:p.R562Q,NEB:p.D5434N,NEB:p.L1591I,NEB:p.E1214K,NEDD9:p.A798T,NEDD9:p.A316T,NEK1:p.R608C,NFASC:p.V256I,NINL:p.R1366C,NLRC4:p.D593N,NLRC4:p.E409K,NLRP4:p.V229I,NLRP5:p.R392H,NME9:p.E75K,NOLC1:p.T428M,NPC1:p.E451K,NPSR1:p.R235Q,NRAS:p.Q61L,NRAS:p.G13R,NRAS:p.G12D,NRG2:p.T246M,NTN4:p.E59K,NUB1:p.R373Q,NUDT15:p.S83Y,NUF2:p.S340L,NUP88:p.A302V,ODZ1:p.R2556W,OGDHL:p.A427T,OGFRL1:p.E427K,OLFM4:p.K132N,OPRM1:p.R353H,OR10A3:p.S93Y,OR2M3:p.R235H,OR52W1:p.R133C,OR5AU1:p.R312H,OR5B17:p.R163H,OR8S1:p.A99V,OSTN:p.R115Q,OTOL1:p.V431I,OTUD3:p.R277I,PAN3:p.S580N,PANK3:p.R260I,PAX3:p.T424M,PCBP1:p.L102Q,PCDH10:p.V477M,PCDH15:p.R1552I,PCDHAC2:p.A519T,PCDHAC2:p.E190K,PCDHAC2:p.A266T,PCDHAC2:p.A156V,PCDHAC2:p.E271K,PCDHAC2:p.A736V,PCDHB5:p.D51Y,PCDHB8:p.D235N,PCDHGC5:p.S289L,PCDHGC5:p.V662M,PCNXL2:p.R135Q,PCOLCE2:p.A348V,PCOLCE2:p.R87H,PDE4B:p.S417L,PGAM1:p.R240H,PHF3:p.R1410I,PIAS2:p.S519L,PIGR:p.A580T,PIK3CA:p.D350G,PIK3CA:p.E545A,PIK3CA:p.E545G,PIK3CA:p.Q546K,PIP4K2C:p.R204H,PKHD1L1:p.F1856L,PLA2G4A:p.E443K,PLCG2:p.E544K,PLCG2:p.D973N,PLEKHA6:p.V328fs,PLEKHG4B:p.E384K,PLK1:p.D233G,PLOD3:p.R297fs,PLSCR3:p.E77K,PLXNC1:p.S462L,PLXNC1:p.R819C,POLA1:p.E603D,POLE:p.S459F,POLE:p.V411L,POLQ:p.R860Q,PPP2R2B:p.P326L,PPP2R5C:p.S259Y,PRAMEF4:p.R248H,PREX1:p.V731I,PRKAA2:p.R407Q,PRKAR2B:p.S309L,PRKCI:p.R480C,PRKRA:p.K122N,PSG8:p.R397C,PSG8:p.R320C,PSMD12:p.R201Q,PTPDC1:p.R430W,PTPN12:p.R765Q,PTPN13:p.S887L,PTPRD:p.L1053I,PTPRU:p.D1434N,PXDN:p.P856fs,PXDNL:p.T1312M,QRSL1:p.S226L,RAB7L1:p.R79W,RALGAPA1:p.R398C,RANBP2:p.R1231C,RBBP7:p.E313K,RBBP7:p.E274K,RBFOX2:p.A340T,RBMXL1:p.R331Q,RHOBTB1:p.T464M,RIMS2:p.R599Q,RIN3:p.S708L,RLBP1:p.D281N,RLBP1:p.A72V,RNASET2:p.A127V,RNF113B:p.A172V,RNF150:p.R236Q,RNF150:p.S208L,RNF43:p.S216L,ROR2:p.D672N,RPL6:p.F193C,RPS6KA5:p.E166K,RSPO2:p.R28C,RUVBL1:p.E431K,RUVBL1:p.R117C,RWDD2B:p.R254H,RXFP3:p.R113C,RYR3:p.R2705Q,SAGE1:p.R229C,SCFD2:p.R545W,SCML4:p.R194Q,SCN10A:p.T1570M,SCN11A:p.A1688T,SCN11A:p.V1289I,SCN11A:p.V566I,SCUBE2:p.V342M,SEMA3A:p.D81N,SEMA4D:p.R252Q,SEPHS1:p.R371Q,SEZ6L:p.S207L,SFPQ:p.R611Q,SFSWAP:p.S617Y,SGCG:p.A220V,SGCZ:p.I41M,SH3TC2:p.R89C,SIGLEC11:p.S363F,SIPA1L1:p.R1063Q,SIPA1L1:p.S1227Y,SLC12A1:p.S292L,SLC22A15:p.S201L,SLC24A2:p.A134V,SLC25A40:p.R96Q,SLC2A7:p.A65T,SLC30A9:p.R194H,SLC33A1:p.S542L,SLC35F3:p.A280T,SLC39A7:p.R382C,SLC43A1:p.P133L,SLC43A3:p.R216H,SLC44A5:p.R185H,SLC6A2:p.A562T,SLC8A1:p.R431H,SLFN12L:p.F232fs,SLITRK1:p.R52H,SLITRK3:p.S298L,SMAD2:p.R321Q,SMARCA4:p.R381Q,SOCS5:p.S464L,SORBS1:p.V1156M,SORBS1:p.F570L,SORCS2:p.R320W,SOX6:p.R719W,SPATA22:p.S150L,SPEG:p.A944V,SPTB:p.R86C,SPTBN4:p.A1993V,STIM2:p.R572Q,STT3B:p.D583Y,SULT1C4:p.R85Q,SUN3:p.E128K,SUPT6H:p.A957T,SYNE1:p.I1249L,SYNE1:p.R170W,SYNE2:p.K3103N,SYNGR4:p.R169Q,SYT7:p.T349M,TANK:p.S380L,TAS1R2:p.R270C,TAS2R1:p.F183L,TCF7L2:p.R488C,TDRD10:p.S322L,TECTB:p.L29I,TEKT5:p.R401H,TGFBR1:p.S241L,THAP5:p.S287Y,THSD7B:p.R90H,TLL1:p.T153M,TLL2:p.S872L,TM9SF2:p.R91H,TMCC3:p.R110H,TMEM132A:p.R481C,TMEM132D:p.R578W,TMEM55A:p.R189Q,TMEM74:p.R125Q,TMPRSS11A:p.S288L,TNIP2:p.A139T,TOP2B:p.R656H,TOX:p.S354L,TP53:p.G244D,TP53:p.R175C,TPO:p.A826T,TPR:p.S2155L,TPTE2:p.R258Q,TPTE:p.S423L,TRAK1:p.D627N,TRAPPC11:p.R568Q,TRIM23:p.R396Q,TRIM44:p.D331N,TRIO:p.R661W,TRPA1:p.K54N,TRPC5:p.S490L,TRPM6:p.R995H,TRPM7:p.R1862C,TRPM7:p.R843Q,TRPS1:p.R1125W,TRPV5:p.R492H,TRRAP:p.R3515W,TSHZ1:p.R881M,TTC21A:p.S270Y,TTN:p.R22795C,TTN:p.R3193Q,TTN:p.R328H,TUBA3D:p.R243Q,TUFT1:p.A340T,TXNDC15:p.R343Q,UBE2NL:p.R86I,UBIAD1:p.A97T,UGT2A1:p.N97fs,USH2A:p.F2369L,USP11:p.A286T,USP25:p.R1119Q,USP26:p.R861Q,USP29:p.F81L,USP31:p.D391N,USP40:p.S851L,UTP14A:p.V148I,VAV3:p.E685K,VCAN:p.R1125H,VPS13C:p.D1359Y,WBSCR17:p.R228C,WDR3:p.E841K,WDR52:p.A157T,XKR6:p.R268Q,XPOT:p.R541W,YTHDC1:p.R267Q,YTHDC2:p.E634K,ZBBX:p.R596I,ZBTB24:p.L607I,ZC3H13:p.R103Q,ZCWPW2:p.D144N,ZEB2:p.R156H,ZFHX4:p.E237D,ZFP14:p.R386C,ZFP28:p.R525I,ZFP2:p.R150I,ZFP3:p.R273I,ZFP90:p.R330Q,ZHX2:p.V790I,ZIC4:p.S305L,ZIM3:p.D352N,ZKSCAN4:p.R319Q,ZMYM4:p.R1446Q,ZNF117:p.R185I,ZNF167:p.R683I,ZNF180:p.R401I,ZNF19:p.R349I,ZNF205:p.R384C,ZNF236:p.S1480L,ZNF248:p.R568I,ZNF259:p.R174I,ZNF266:p.R512Q,ZNF266:p.R344Q,ZNF280B:p.E363K,ZNF283:p.R392Q,ZNF32:p.S62L,ZNF345:p.R82Q,ZNF345:p.R334I,ZNF350:p.R310Q,ZNF434:p.R306C,ZNF439:p.E239D,ZNF439:p.R262I,ZNF443:p.R301I,ZNF445:p.L682M,ZNF470:p.R641I,ZNF471:p.R282I,ZNF484:p.R138C,ZNF528:p.R279Q,ZNF563:p.K26N,ZNF573:p.R350I,ZNF583:p.R344I,ZNF585A:p.E638K,ZNF585A:p.E491D,ZNF625:p.R235Q,ZNF652:p.K327N,ZNF677:p.R451I,ZNF678:p.R368I,ZNF699:p.R41I,ZNF70:p.R244I,ZNF770:p.S441P,ZNF774:p.R423Q,ZNF782:p.K247T,ZNF7:
p.R337I,及びZNF831:p.E949Dからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも56.65%は少なくとも1つの腫瘍特異的突然変異を有する、請求項49に記載の医薬組成物。
- (a)前記対象の集団はDLBCLに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、EZH2:p.Y641F,MYD88:p.L273P,BCL2:p.G33R,CARD11:p.E626K,ADCY2:p.A87V,BCL2:p.N172S,BCL2:p.H20Q,BRAF:p.K601E,BTG1:p.L31F,CACNA1E:p.R1458C,CARD11:p.E93D,CD79B:p.Y197D,CD79B:p.Y197H,CREBBP:p.R1446H,GRID1:p.E622K,HIST1H1C:p.A65V,HIST1H1E:p.G133A,HIST1H3B:p.A48S,KRAS:p.G13D,MYD88:p.S251N,PABPC1:p.R94C,PIM1:p.L164F,PIM1:p.L184F,POU2F2:p.T239A,POU2F2:p.T239S,RELN:p.R2971Q,SLC25A48:p.A67T,STAT6:p.D468H,TNF:p.L47F,及びTRAF7:p.R11Hからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも13.79%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項51に記載の医薬組成物。
- (a)前記対象の集団はKICHに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、ACR:p.W279C,AGRN:p.1284_1285VT>A,C7orf25:p.R384fs,CAMSAP1:p.T466fs,CBWD6:p.E102fs,DOCK8:p.L1111fs,EBPL:p.Q196P,EBPL:p.L189V,GFM1:p.A17fs,GOLGA6L6:p.D570E,ITGA5:p.A48D,LUZP2:p.S154fs,MTMR9:p.K193fs,MUC16:p.P10452fs,MUC4:p.S2832P,ODF2L:p.K407fs,RHBDD3:p.G34fs,RILPL1:p.S358R,TAS2R30:p.L236fs,TRRAP:p.A973S,UBR5:p.K2120fs,URGCP:p.G639fs,ZNF98:p.A222T,及びZSWIM6:p.Q610fsからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも50%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項53に記載の医薬組成物。
- (a)前記対象の集団はKIRPに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、FAM18B2:p.C51Y,ZNF598:p.E25G,NEFH:p.E645K,EEF1B2:p.S43G,NEFH:p.AKSPEKEE652del,OBP2B:p.K61N,SKI:p.A62G,C14orf126:p.R6W,KRT8:p.S59A,ACSBG2:p.I250M,ASIC2:p.R46L,CSGALNACT2:p.L362F,FRG1B:p.A50P,IDUA:p.H33Q,KRTAP4−5:p.S74C,SCAF11:p.E926fs,SYN2:p.A34del,ZNF814:p.R322K,BMS1:p.E878D,JMY:p.P822T,KIF1A:p.E917D,KRTAP4−7:p.S57P,LAMA5:p.L2223R,LRP1:p.P1058T,MED16:p.H449Q,MUC2:p.T1488P,MUC5B:p.D682G,NACA2:p.R75K,NEFH:p.665_666insEE,OR2L8:p.S201fs,RGPD5:p.P1760A,RRN3:p.P11S,RRN3:p.R9C,STAG3L2:p.L81fs,ZNF814:p.G320E,ACP6:p.V29G,AHNAK2:p.S2166F,AHNAK2:p.P1215S,AP1G1:p.I782fs,AQP2:p.N68T,BAIAP2L2:p.V396M,BMP6:p.Q118L,BST1:p.G36A,CDR1:p.V31A,CLDN7:p.S172A,CLIP1:p.S1018fs,COL18A1:p.G884fs,CROCC:p.A355P,CTAGE15P:p.A364V,CUBN:p.I2816M,DMRT2:p.T106S,DPY19L1:p.V249L,DSPP:p.D1047N,EBPL:p.L189V,EIF4G1:p.E465del,EXOSC2:p.R11P,FAM216A:p.P36S,FCGR2A:p.V222G,FMOD:p.S331R,FOLR2:p.Q112R,FRG1B:p.L20P,GAGE2B:p.9_10insY,GDPD5:p.G593fs,GIMAP8:p.A544S,GLUD2:p.R300G,GLUD2:p.S496R,GPR135:p.Q5P,HOXD8:p.Q67H,IER5:p.R194G,IL25:p.C168fs,JSRP1:p.V92A,KRAS:p.G12D,KRTAP1−1:p.Y86C,KRTAP4−11:p.L161V,LTBP1:p.L163P,MAML2:p.Q591K,MAPK7:p.A501D,MEF2A:p.P99S,MET:p.H1094Y,MET:p.M1250T,MST1:p.N435fs,MUC2:p.T1582R,MUC2:p.T1722I,MUC4:p.A4222T,MUC4:p.T2335M,MUC4:p.P1138L,MUC5B:p.S1098A,MUC5B:p.S3431N,MYH7:p.A1487T,NBPF10:p.R39fs,NBPF10:p.Y638S,NEFH:p.654_654S>SPEKAKS,PARG:p.A584T,PBX2:p.Y262F,PIP4K2A:p.R219K,RLIM:p.S471P,RUNX2:p.Q71E,SGK223:p.R63S,SMARCB1:p.L365fs,SRCAP:p.Q1875fs,TBC1D2B:p.R920Q,TCF7L2:p.R482fs,TMEM131:p.K640fs,TMEM60:p.K77fs,TPPP:p.R30K,TRPV3:p.A218E,TTBK2:p.C83W,UBXN11:p.S510G,UGT1A1:p.T4A,UTS2R:p.A289E,YBX1:p.P250L,ZNF514:p.V81G,ZNF516:p.A256D,ZNF681:p.K405Q,ZNF814:p.D404E,ZNF814:p.P323H,ZXDB:p.G206Rからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも42.24%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項55に記載の医薬組成物。
- (a)前記対象の集団はLIHCに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、TP53:p.R249S,CTNNB1:p.D32V,CTNNB1:p.D32G,CTNNB1:p.S33P,CTNNB1:p.K335I,CTNNB1:p.H36P,EEF1A1:p.T432L,GNAS:p.R844C,OR2T4:p.V137L,TP53:p.H193R,ATXN1:p.Q217H,CSMD3:p.F2383fs,CTNNB1:p.D32N,CTNNB1:p.S33C,CTNNB1:p.G34V,CTNNB1:p.S45P,CTNNB1:p.N387K,DHRS4:p.I218T,DNM2:p.E378D,F5:p.Q426L,GALNTL5:p.A45T,GPX1:p.P77R,GRM8:p.R852C,IDH1:p.R132C,KIF26B:p.A2033T,KRT8:p.S59A,LOC100132247:p.T532P,NEB:p.D3854H,PIK3CA:p.H1047R,SOLH:p.R714H,TP53:p.R158H,TP53:p.V157F,及びZNF638:p.D400Nからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも6.57%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項57に記載の医薬組成物。
- (a)前記対象の集団はMMに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、NRAS:p.Q61R,KRAS:p.Q61H,KRAS:p.G13D,NRAS:p.Q61K,BRAF:p.V600E,NRAS:p.Q61H,NRAS:p.G13R,ZNF717:p.W315C,ATP13A4:p.V431G,DNAJC12:p.R135K,IRF4:p.K123R,KRAS:p.A146T,KRAS:p.Q61R,KRAS:p.G12A,KRAS:p.G12D,ZNF717:p.N594I,ACTG1:p.A22P,ARL6IP1:p.M75L,BEND2:p.E630K,BRAF:p.G469A,CDHR1:p.R218G,DIS3:p.R780K,DMXL2:p.D2412E,DNAJC10:p.I80K,EGR1:p.Q9H,FGFR3:p.*807S,IDH1:p.R132C,IL6ST:p.P216H,INTS12:p.M1V,KRAS:p.K117N,KRAS:p.A59G,KRAS:p.G12R,MAX:p.R36W,MLL5:p.G492E,NBPF1:p.E810K,NRAS:p.Q61L,NRAS:p.G12D,ODF2L:p.E294K,PADI2:p.T114P,PNLIP:p.T37M,PRDM1:p.S588C,PTPN11:p.E76K,PTPN14:p.E286K,RBM6:p.V675G,SCN10A:p.R1142H,SRGAP1:p.T61M,SUSD1:p.T168P,TAS2R16:p.V231I,TINAG:p.E403K,TRIP12:p.L1775P,及びZNF717:p.C844Sからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも23.9%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項59に記載の医薬組成物。
- (a)前記対象の集団はPRADに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、HSD17B7P2:p.N175S,RGPD5:p.P1760A,FRG1B:p.L52S,EEF1B2:p.S43G,FRG1B:p.I10T,FRG1B:p.A53T,LRRC37A2:p.T102S,NBPF10:p.E3455K,PTH2:p.L22V,CYP2D7P1:p.S32A,FAM47C:p.N648D,MAP3K9:p.E38del,MUC4:p.H4205Q,CHEK2:p.K373E,FRG1B:p.A11T,FRG1B:p.A50P,HLA−J:p.R124W,KRTAP1−5:p.I88T,KRTAP4−9:p.D18V,NPIP:p.A271V,PDGFRA:p.R483fs,ZNF780A:p.Q600H,ZNF845:p.R925H,ZNF91:p.R333H,ARFGAP3:p.N299fs,BTN2A3P:p.P3S,FNBP4:p.TT58del,HLA−A:p.Q78R,LOC554223:p.RAPWMEQ147del,PODXL:p.28_30PSP>P,POLI:p.D17del,SPOP:p.F133L,SYN2:p.A34del,TMEM52:p.23_26LLPL>L,UBC:p.L149R,ZNF208:p.I647S,ZNF799:p.E589G,ZNF814:p.D404E,ASTN2:p.L221del,B4GALNT1:p.G88fs,C16orf74:p.S21del,CCDC15:p.H458P,CD209:p.R129W,CNTNAP1:p.S1029I,DBR1:p.541_542DD>D,FAM22F:p.S691del,FRG1B:p.D32V,FRG1B:p.I34T,FRG1B:p.N55D,FRG1B:p.I59V,FRG1B:p.S71N,KIF25:p.W3R,KRTAP4−11:p.L161V,KRTAP4−11:p.M93V,KRTAP4−11:p.R51K,KRTAP4−6:p.S153Y,LILRB5:p.S598P,LMOD2:p.E124del,LOC645752:p.L40P,LRP1:p.P1058T,LRRIQ3:p.K244fs,LURAP1L:p.55_56insGGG,MLLT10:p.V463E,MYOCD:p.Q310del,NBPF10:p.N1369D,OTUD4:p.T909I,PARG:p.A584T,PEX1:p.I370fs,POTEC:p.K507E,POTEC:p.R477Q,POU4F2:p.68_69insG,PRG4:p.T417P,SDHAP2:p.R31C,SPOP:p.F133C,SPOP:p.W131G,TIMD4:p.T152del,TMEM121:p.P299del,TP53:p.G245S,UBC:p.R73L,UBC:p.I191T,WASH3P:p.G175S,ZMIZ1:p.D1048fs,ZNF709:p.T413I,ACADS:p.R330H,ADAMTS7:p.K1357fs,AFF2:p.R597H,AGAP6:p.S127I,AK302238:p.A44T,AK302879:p.Q191R,ALDH1A2:p.R85C,ANAPC1:p.T537A,ANKRD36C:p.H438R,AP4B1:p.R276W,ARFGAP2:p.S38N,BBS9:p.F268fs,BC139719:p.L133R,BRAF:p.G469A,C22orf43:p.D171del,CANT1:p.K131R,CHD3:p.E35del,CLEC4A:p.R209H,CNOT3:p.E20K,CNPY3:p.17_18LL>L,CNTNAP3B:p.S317T,CNTNAP3B:p.M1247I,CTNNB1:p.T41A,DDX10:p.D788del,DLC1:p.S741T,DPY19L2:p.M210V,EDC4:p.S617del,EFCAB6:p.R379K,ERC2:p.927_928HH>H,FAM111B:p.S269fs,FEM1A:p.L620M,FHOD3:p.A632fs,FLJ43860:p.L850fs,FMN2:p.G59del,FNBP4:p.914_915PP>P,FRG1:p.E86del,FRG1B:p.K13N,FRG1B:p.P42Q,GABRB1:p.R416C,GABRR2:p.A368V,GAGE2B:p.9_10insY,GOLGA8DP:p.N84H,GOT2:p.R355W,GPATCH4:p.K210fs,HDGFL1:p.188_189insA,HLA−DQB2:p.G250S,HLA−DQB2:p.R247H,IDH1:p.R132H,IL27:p.E176del,IRF2BPL:p.123_125QQQ>Q,KANK3:p.DGDS489del,KIAA1462:p.858_859SS>S,KRTAP4−11:p.S48R,KRTAP4−7:p.S57P,KRTAP4−8:p.C95S,LPHN3:p.R826H,LRP10:p.L11del,LRP5:p.S1609P,LRRC16B:p.R787W,MAS1L:p.R324G,MECOM:p.R915Q,MED12:p.L1224F,MED12L:p.Q2115del,MESP2:p.GQGQGQGQ195del,MGAT4C:p.T345M,MLEC:p.E238del,MSLNL:p.T68P,MUC7:p.S173P,MYC:p.Q37del,NBPF10:p.N440D,NLRP6:p.E611del,NOX3:p.C404fs,OR1M1:p.V69I,OR7E24:p.L7fs,OTUD4:p.A153del,PANK2:p.T417fs,PCLO:p.S496P,PCNT:p.S162G,PCSK9:p.23_24insL,PHOSPHO1:p.S32del,POU4F1:p.H108del,PRAMEF8:p.R319H,PRDM7:p.M387L,PRG4:p.T597P,PTPRD:p.R1323C,PTPRF:p.R1174Q,ROBO3:p.RS1367del,ROCK1:p.T518S,RPTN:p.G296S,RTL1:p.152_152E>EE,SIRPA:p.V233I,SLC2A6:p.A230D,SLC8A2:p.E710del,SMG7:p.E846fs,SNAPC4:p.S542del,SP8:p.G165del,SPOP:p.F133I,SPOP:p.F133V,SPOP:p.F102C,SPOP:p.F102V,SRSF11:p.G17fs,SRSF4:p.K396del,SSPO:p.S4198fs,STAG3L2:p.L81fs,STK19:p.R18fs,TBC1D2B:p.R920Q,TBC1D9:p.P1233T,TCHH:p.P1158R,TCOF1:p.K1366del,TNRC18:p.2664_2665SS>S,TP53:p.R248Q,TP53:p.R175H,TP53:p.C141G,TSPAN4:p.L92V,UBXN11:p.GPGPGPSP504del,UTP3:p.E81del,WASH3P:p.L187V,ZAN:p.P717L,ZAN:p.L878P,ZFP90:p.R591fs,ZNF761:p.H373R,及びZNF91:p.H305Rからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも39.85%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項61に記載の医薬組成物。
- (a)前記対象の集団はSTADに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、RNF43:p.G659fs,BZRAP1:p.P1416fs,XYLT2:p.Y526fs,LARP4B:p.T163fs,PGM5:p.I98V,ZBTB20:p.P692fs,ARID1A:p.G1848fs,FHOD3:p.P334fs,KIAA0182:p.T120fs,ATP6V1B1:p.Y383fs,PIK3CA:p.H1047R,FRMD4A:p.P1005fs,PIK3CA:p.E545K,CDC14A:p.N123fs,KRAS:p.G13D,MLL2:p.T172fs,BCORL1:p.S1679fs,PLEKHA6:p.V328fs,C9orf131:p.P342fs,CD4:p.Q164fs,FBXW7:p.R465C,GNG12:p.T68fs,IRS4:p.G591fs,JARID2:p.V422fs,KIAA0195:p.I902fs,MBD6:p.P732fs,MVK:p.P138fs,PAMR1:p.G101fs,WNT16:p.W165fs,ZNF43:p.N251fs,ABCA6:p.L306fs,ADAM28:p.K73fs,AOC3:p.L79fs,ATP2A1:p.R819fs,B2M:p.L13fs,C6orf89:p.P58fs,CNTLN:p.K1305fs,CR2:p.V206fs,DYRK4:p.K468fs,ERBB3:p.V104M,GLI1:p.W272fs,KRAS:p.G12D,MLL2:p.T172fs,MSH6:p.T1085fs,NLK:p.C190fs,OR5M3:p.T89fs,PAX6:p.P375fs,PTEN:p.L265fs,RABGAP1:p.K928fs,RAD51AP2:p.T316fs,SVIL:p.G1862fs,TP53:p.R273H,WNK4:p.G606fs,ARID1A:p.P2139fs,AXIN2:p.G665fs,C13orf33:p.R67fs,C1QTNF5:p.P308fs,CELSR1:p.G614fs,CRYGD:p.G159fs,DCHS1:p.R235fs,DDC:p.I433fs,EDNRB:p.Y383fs,EPHA2:p.P460fs,FOXN3:p.P96fs,HDAC4:p.P901fs,INF2:p.S527fs,KIRREL2:p.V649fs,KLF3:p.I104fs,KLHL14:p.P231fs,MAP7D3:p.Q308fs,OTX2:p.R44fs,PAFAH1B1:p.K302fs,PLAGL2:p.P10fs,POLM:p.P97fs,PRPF40B:p.I31fs,RALGAPB:p.T379fs,SBNO1:p.N1139fs,SERPINI1:p.L81fs,SH3KBP1:p.L574fs,SLC12A7:p.H686fs,SLC27A3:p.P643fs,TBX4:p.S370fs,TP53:p.R273C,TP53:p.R175H,TRAM1L1:p.R345fs,WBP1:p.P138fs,ABCC4:p.L883fs,AKAP13:p.K2785fs,ALDH3A1:p.P562fs,ALPK2:p.L356fs,ARFGEF1:p.P1552fs,ARID1A:p.G1848fs,AVPR1A:p.F351fs,BAX:p.M38fs,C14orf43:p.P313fs,C1QTNF5:p.G194fs,C7orf50:p.L179fs,CDC25C:p.K322fs,CETN3:p.K63fs,CHD3:p.P597fs,CTCF:p.K202fs,CTSC:p.F105fs,DDX17:p.G163fs,DLGAP3:p.G377fs,EBF3:p.G255fs,FHDC1:p.F100fs,FILIP1L:p.K749fs,FLNB:p.W529fs,GBP7:p.G431fs,GCC2:p.E700fs,GPR161:p.G517fs,IWS1:p.S802fs,KIAA0240:p.K895fs,KIAA1967:p.P415fs,LRRC43:p.D558fs,MACF1:p.R707fs,MBD6:p.G780fs,MLL3:p.F4496fs,MPRIP:p.A351fs,MUC6:p.2129_2130SS>S,NOX5:p.P467fs,OPTN:p.P24fs,OR4K5:p.F177fs,PIK3CA:p.N345K,PIK3CA:p.E542K,PLXNA1:p.P1016fs,PNPLA7:p.P1199fs,PODN:p.I301fs,PPP2R3B:p.T389fs,PRSS36:p.L680fs,RGL2:p.G203fs,RHOQ:p.V190fs,RNF111:p.R771fs,RTN2:p.P313fs,SALL4:p.V995fs,SBF1:p.P1076fs,SETDB2:p.R715fs,SNAPC2:p.T292fs,SPG20:p.F232fs,SRCAP:p.P1876fs,STAT2:p.P489fs,TCHP:p.E172fs,TP53:p.R282W,TP53:p.R248Q,USP21:p.K474fs,WDR7:p.G262fs,ZBTB7C:p.E157fs,ZFC3H1:p.K385fs,ZNF124:p.T339fs,ZNF626:p.K115fs,ADNP2:p.S322fs,AGAP1:p.G127fs,ALDH2:p.L286fs,ARHGAP5:p.D890fs,ARHGEF17:p.A615fs,ARID1A:p.Y1324fs,ART1:p.I243fs,ASCL4:p.D35fs,ATXN2L:p.G998fs,B3GNT5:p.F30fs,BCKDHA:p.H37fs,BCL9L:p.P1127fs,BEND3:p.D265fs,BNC2:p.S575R,BRD3:p.P24fs,C12orf51:p.P4235fs,C1R:p.P216fs,C7orf49:p.G130fs,CA2:p.I145fs,CABP5:p.R145fs,CASD1:p.F781fs,CASP8:p.R471fs,CCDC153:p.P200fs,CD93:p.D280fs,CROT:p.L32fs,CSF3R:p.P468fs,CTCF:p.K202fs,ERBB2:p.S310F,FAM46D:p.S69R,FBN3:p.G601fs,FBXO21:p.F144fs,GAS6:p.G150fs,GLYR1:p.G380fs,GXYLT1:p.L223fs,HAUS6:p.S530fs,IGF2R:p.T1314fs,ITGB1:p.L378I,KDM3B:p.P1316fs,KIF13A:p.K1115fs,KLF3:p.S224fs,LARP1:p.A223fs,LRP1:p.G1488fs,LRP1:p.G1488fs,MAGEE2:p.Q45fs,MAMSTR:p.P162fs,MAPK15:p.Q511fs,MLL2:p.P647fs,MOCS2:p.P22fs,MTG1:p.L105fs,MTG1:p.H327fs,MTIF2:p.N109fs,NID2:p.R1035fs,PAX2:p.P395fs,PCCA:p.R230H,PDZD2:p.R101fs,PFKP:p.M593fs,PIK3CA:p.R88Q,PLA2G1B:p.L53fs,PLAU:p.R201fs,PMEPA1:p.P208fs,POP1:p.K750fs,PTCH1:p.P1307fs,PTPRT:p.P1075fs,RDBP:p.P6fs,RNMT:p.K392fs,ROBO2:p.P1080fs,RUNDC3B:p.L6fs,SDAD1:p.K275fs,SLC10A6:p.G109fs,SNAPC1:p.D211fs,SPATA5L1:p.C685fs,SPTA1:p.K1732T,STAT5B:p.P367fs,SYT4:p.M1fs,TAF1L:p.K851fs,TAP2:p.L75fs,TBL1XR1:p.N126fs,THEMIS:p.K406fs,TMEM79:p.P161fs,TP53:p.C176F,TP53BP2:p.K69fs,TP53RK:p.L174fs,UBQLN2:p.A523fs,UHRF1BP1:p.I1330fs,VPRBP:p.K939fs,VPS13B:p.T56fs,WASF3:p.P305fs,YLPM1:p.E1178fs,ZC3H13:p.K1006fs,ZC3H18:p.P825fs,ZC3H4:p.E779Q,ZNF48:p.P247fs,ZNF608:p.A465fs,ZNF878:p.S238fs,ZSCAN18:p.P225fs,ABCB1:p.R527fs,ABCB6:p.G318fs,ACACB:p.G255fs,ACP1:p.Q123fs,ACTL6A:p.L88fs,ADAMTSL4:p.G778fs,AGBL5:p.I420fs,AHI1:p.K303fs,AKAP9:p.M3743fs,AKD1:p.R1209fs,ANKRD40:p.D99E,ARHGEF5:p.S1512fs,ARID1A:p.K1071fs,ARID3A:p.S557G,ARPP21:p.I130fs,ASPN:p.F67fs,ASXL3:p.E873fs,ATP6V1C2:p.R312fs,BEST3:p.P444fs,BRAF:p.P403fs,BRMS1:p.G107fs,BTBD11:p.T451fs,BTBD11:p.A561V,C11orf9:p.S261fs,C14orf102:p.R90fs,C14orf43:p.Q36fs,C15orf52:p.G98fs,C19orf21:p.R262C,C19orf70:p.P50fs,C20orf160:p.P46fs,C3:p.P890fs,CADPS2:p.N468fs,CASC3:p.S232F,CASC3:p.P603L,CASC3:p.P645L,CASC3:p.S658L,CASKIN2:p.P727fs,CBLL1:p.E138fs,CBLN3:p.P69fs,CCDC108:p.P1164fs,CCDC148:p.K420fs,CCDC153:p.P200fs,CCDC169−SOHLH2:p.K162R,CCDC88A:p.K677fs,CD1E:p.F85V,CD3EAP:p.K218fs,CDH11:p.K357T,CDH1:p.D254Y,CDH23:p.V403I,CFI:p.K37fs,CHPF2:p.D645fs,CIC:p.R507fs,CIC:p.A1114fs,CIC:p.A1114fs,CLSTN1:p.T615M,CNBD1:p.L396P,CNGA4:p.K510T,CNOT6:p.S248fs,CNTROB:p.R920fs,COL9A1:p.P283fs,CPAMD8:p.P784fs,CR1L:p.L79fs,CRB1:p.F630V,CSMD1:p.L3410V,CTNNA3:p.K856fs,CTNND1:p.I447fs,CTSD:p.P89fs,CUX1:p.A439fs,CYP7B1:p.K332T,DAB2IP:p.D994fs,DNAH11:p.T871fs,DNAH8:p.K1688fs,DNAJC1:p.K193fs,DNM2:p.P791fs,DSTN:p.F101fs,DYRK1B:p.Q545fs,EAF2:p.V109fs,EDNRB:p.A104V,EEA1:p.N570fs,EFHA1:p.F290fs,EGR1:p.P332fs,EIF4G3:p.K563fs,ELK3:p.S173fs,ENTPD2:p.G204fs,EOMES:p.G332fs,EPHA10:p.P868fs,EPHB6:p.G54fs,EPHX1:p.P132fs,EPPK1:p.G2015fs,ERBB4:p.M1fs,ESF
1:p.T99fs,EXOSC8:p.L160fs,FAM113B:p.R51fs,FAM116A:p.L441fs,FAM135B:p.S645R,FAM151A:p.P117fs,FAM193A:p.D428fs,FAM193A:p.D428fs,FAM214B:p.A42fs,FAM40B:p.R740C,FAM70B:p.S19L,FASTKD1:p.K3fs,FBXW7:p.R479Q,FBXW9:p.G298fs,FER:p.L474fs,FERMT2:p.K152fs,FGGY:p.G138fs,FIGNL1:p.K309fs,FLG:p.K159fs,FLNB:p.W529fs,FOLH1:p.S501fs,FYB:p.G324fs,GABRD:p.Q412fs,GALNTL1:p.W317fs,GANAB:p.L23fs,GCDH:p.L389fs,GIMAP7:p.V276fs,GIPC3:p.G227fs,GLI3:p.P1033fs,GLIPR1L2:p.G92fs,GNPNAT1:p.F54fs,GON4L:p.M134fs,GPATCH4:p.K210fs,GRK4:p.K22fs,GTF3C1:p.S767fs,GTF3C4:p.E562fs,H2AFY2:p.K144fs,HCFC1R1:p.P83fs,HCRTR2:p.S9fs,HCRTR2:p.S9fs,HDLBP:p.G747fs,HECA:p.R333fs,HIVEP3:p.H554fs,HIVEP3:p.P534fs,HLA−C:p.P209fs,HOOK1:p.L361fs,HOXD8:p.P122fs,HTT:p.G697fs,IBTK:p.K1213fs,IDE:p.K37fs,IFT172:p.A837T,INPPL1:p.A974fs,INPPL1:p.P1154fs,INSM2:p.T533fs,INTS12:p.L14fs,INVS:p.R815fs,IPO11:p.S844fs,IRX6:p.A425V,ISG20L2:p.P288fs,ITGB8:p.A7fs,JARID2:p.G394fs,JHDM1D:p.R97fs,KBTBD6:p.G442fs,KCNC1:p.K455fs,KCNH2:p.G149A,KCNJ10:p.P102fs,KCNMB2:p.N151K,KCTD21:p.T6M,KIAA0586:p.A1592fs,KIAA1009:p.F406fs,KIAA1109:p.E1588fs,KIAA2026:p.K690fs,KIF26B:p.S1065fs,KIF6:p.L204fs,KIRREL:p.P335fs,KLC2:p.T568fs,KRAS:p.Q61H,KRAS:p.G12S,MAN1C1:p.G431fs,MAP1A:p.P2063fs,MAP2:p.K1472fs,MAP3K12:p.R449del,MAP7D1:p.A80fs,MGST2:p.K102fs,MKI67:p.T1664fs,MKL1:p.P307fs,MLL2:p.P2354fs,MLL2:p.L656fs,MLL2:p.P647fs,MLL2:p.L1877fs,MMP3:p.I64fs,MPDZ:p.K1582fs,MTUS2:p.R1005W,MUC16:p.A6156T,MYB:p.R481fs,MYEOV:p.L269fs,MYH11:p.K1263del,MYO18A:p.P209fs,MYO7A:p.I539fs,MYOCD:p.G226fs,NAA16:p.H514fs,NBEA:p.V2247fs,NCAPD3:p.Q909fs,NCAPH:p.T466fs,NCOR2:p.P1308fs,NEFM:p.A213V,NEK8:p.V690fs,NF1:p.T676fs,NHLRC1:p.F204fs,NKD1:p.P286fs,NPR3:p.Y138H,NT5M:p.P206fs,NUFIP2:p.R224fs,NUP210:p.L135fs,NYNRIN:p.G113fs,OBSCN:p.G997fs,OGDH:p.Y948fs,OR4C16:p.S135R,OR51A7:p.L124R,OR7C1:p.C179fs,OSBP2:p.H627fs,OTOF:p.E1304K,P2RX1:p.R20fs,PALB2:p.M296fs,PALB2:p.N280fs,PANK1:p.K400fs,PAPD4:p.C225fs,PAPPA2:p.I1683fs,PARP15:p.K461fs,PARP4:p.K847fs,PCDH10:p.N118fs,PCDH10:p.P225fs,PCGF3:p.H63fs,PELI2:p.G197fs,PHACTR1:p.V251fs,PHACTR2:p.S237fs,PHACTR4:p.S354fs,PHKB:p.K642fs,PIAS3:p.H116fs,PIGO:p.P787fs,PIGT:p.A346fs,PIK3R3:p.M341fs,PITPNM1:p.P295fs,PKN2:p.K76fs,PLA2G15:p.W230fs,PLAG1:p.K184fs,PLEKHO1:p.T254fs,PLOD3:p.R297fs,PLOD3:p.P296fs,PLXNA2:p.P464fs,POLQ:p.L1430fs,PPARGC1B:p.P135fs,PPL:p.P454fs,PPM1H:p.P226fs,PPP1R12C:p.P372fs,PREX2:p.R562fs,PRICKLE4:p.Q109fs,PRKAR1B:p.P87fs,PRKCG:p.R345C,PRMT8:p.S28fs,PROX1:p.F592fs,PRRG3:p.R163fs,PSD2:p.G256fs,PTCHD3:p.F588fs,PTPN4:p.N319fs,PTPRC:p.Q895H,PWWP2B:p.S84fs,PYGO2:p.Q150fs,RABGAP1:p.K928fs,RB1CC1:p.N1171fs,RBM6:p.R96fs,RHOA:p.Y42C,RIMS1:p.R71G,RIMS2:p.V401fs,RING1:p.G171fs,RINT1:p.L107fs,RNF43:p.P116fs,ROBO2:p.K1293fs,RPS6KA6:p.K109fs,RRS1:p.N45fs,RSF1:p.K386fs,RUSC2:p.P486fs,RXFP3:p.A60V,SAFB:p.W798fs,SCARF1:p.R614Q,SCLT1:p.K109fs,SERPINB12:p.Q168fs,SGK3:p.L61fs,SGOL2:p.E407fs,SIGLEC1:p.P318fs,SIK1:p.Q678fs,SLC16A6:p.G98fs,SLC25A17:p.F28fs,SLC26A7:p.I629fs,SLC32A1:p.V494I,SLC4A3:p.L1061fs,SLC7A10:p.P157fs,SLC9A2:p.T746fs,SLITRK1:p.K45fs,SND1:p.H721fs,SOAT1:p.F64fs,SORBS2:p.E1158fs,SOX7:p.L309fs,SPAG17:p.Q1264fs,SPTY2D1:p.P485fs,SRCIN1:p.P865fs,SREBF2:p.H763fs,SRRT:p.G102fs,STAB1:p.P1120fs,STRADA:p.R333fs,STX2:p.K252fs,SV2A:p.E138fs,SYCP2:p.M176fs,SYNJ2:p.P1111fs,TAS2R10:p.L196fs,TBC1D22B:p.A175fs,TEAD2:p.P298fs,TFE3:p.G482fs,TGM6:p.T358fs,TIMM44:p.K83fs,TIMP3:p.A199fs,TLR4:p.L498V,TMEM132D:p.P206fs,TMEM41A:p.F156fs,TMEM41B:p.F230fs,TMTC4:p.R611C,TNK2:p.P632fs,TOPBP1:p.I1381fs,TP53:p.E286K,TP53:p.P152fs,TRIP11:p.K541fs,TRPA1:p.T673fs,TRPM8:p.H765fs,TTF1:p.K336fs,TTI1:p.R707H,TTN:p.E15192D,U2AF2:p.L175fs,UBC:p.G684fs,UBR4:p.P2802fs,UPF2:p.E1033D,UPK2:p.P49fs,USP13:p.I116fs,USP15:p.K782fs,VASH1:p.G3fs,VEZF1:p.355_356insN,VPS13A:p.F2883fs,WAPAL:p.R522fs,WDFY3:p.L1842fs,WDR59:p.N160fs,WDR5:p.N214fs,WDR60:p.Q412fs,WDTC1:p.M287fs,WHSC1L1:p.K418fs,WNT1:p.W167fs,XIRP2:p.E1007D,YBX2:p.P226fs,YIF1A:p.R131fs,ZBBX:p.E151del,ZBTB40:p.L262fs,ZBTB7C:p.G342fs,ZBTB7C:p.D154fs,ZC3H18:p.T701fs,ZDHHC5:p.E651del,ZDHHC7:p.P316fs,ZFHX3:p.R1893fs,ZFHX3:p.E763fs,ZFHX4:p.L408fs,ZHX3:p.N249K,ZIM3:p.I384fs,ZKSCAN5:p.D13fs,ZMYM4:p.K345fs,ZNF236:p.T1410M,ZNF23:p.F122fs,ZNF334:p.K426fs,ZNF358:p.T130fs,ZNF701:p.L296fs,ZNF711:p.L737fs,及びZNF831:p.A49fsからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも48.79%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項63に記載の医薬組成物。
- (a)前記対象の集団はTGCTに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、FAM18B2:p.C51Y,BTN2A3P:p.P3S,MUC2:p.G1715S,NBPF10:p.L44V,SP8:p.G156S,DCP1B:p.Q252H,DEK:p.E41D,ERC1:p.K692R,FAM104B:p.D75H,FRG1B:p.M49V,KRTAP10−10:p.V234M,LRRCC1:p.A6V,NRAS:p.Q61R,PNPLA4:p.L223P,ANKLE1:p.C644fs,ANKLE1:p.C644fs,KIT:p.D816H,KIT:p.D816Y,MUC2:p.T1597I,PSMD11:p.A5V,RHPN2:p.V73M,RUNX2:p.Q71E,SP4:p.E7K,TUBA1C:p.L146F,ZNF814:p.Y324H,ADAMTS17:p.N572T,ATRX:p.K1936R,BCL11B:p.E535D,BMP2K:p.Q460H,BMP2K:p.H487Q,C12orf32:p.D60V,C22orf43:p.K19E,CDC27:p.N571I,CDC27:p.P242S,DDX11:p.K208fs,EBPL:p.L189V,EZH2:p.K510R,FAM86A:p.A141T,GAS2L2:p.D189A,GRID2IP:p.LS754del,HGC6.3:p.E171G,KIT:p.D816V,KIT:p.N822Y,KIT:p.N822K,KRAS:p.Q61R,KRAS:p.G12V,KRTAP1−1:p.I116V,LRRC37BP1:p.Y166D,MEF2A:p.R127Q,MFF:p.S7F,MST1:p.R347W,MUC4:p.S3048L,MUC6:p.H2000Q,MUC6:p.P1977H,NAT10:p.I393T,OPLAH:p.A900D,PIEZO1:p.Q749E,PRAMEF4:p.F300V,RBM10:p.E184D,SERINC2:p.T121P,SPIN2A:p.M150V,SRRM2:p.A2257S,SSBP3:p.K6R,ZNF680:p.R501W,ABCC8:p.Y512C,ABCC9:p.L466P,ABCD1:p.H169Q,ABL2:p.P19T,ACVR2B:p.R48C,AHDC1:p.P33fs,AHNAK2:p.L1640M,ALPPL2:p.W31S,AMMECR1:p.G77C,ANK3:p.D1322E,ANKHD1−EIF4EBP3:p.G60S,ANKRD11:p.Y2015S,ANKRD11:p.K369R,ANKRD50:p.V637M,APBB3:p.L450P,ARHGAP24:p.T35A,ARID4B:p.G1076A,ARMC3:p.A514T,ARRB2:p.T99P,ATAD5:p.I305V,ATXN3:p.305_306insQQQQQQQ,AVPR1B:p.G39R,AXDND1:p.E994Q,BAI2:p.A231G,BEST3:p.P383L,BIRC6:p.V414L,BIRC8:p.A225M,BRWD1:p.K1319R,BTN2A2:p.L15F,C12orf51:p.A2644T,C12orf65:p.K143T,C16orf62:p.L244I,C1QBP:p.T225I,C1orf167:p.S123G,C5orf25:p.Y4F,CACNA1E:p.G2080S,CAPNS1:p.LV303del,CCDC159:p.A332S,CDKAL1:p.P409L,CDYL:p.V48A,CDYL:p.A60G,CELSR2:p.L17P,CHD4:p.E138D,CKAP5:p.G576A,CLCC1:p.K52R,CMTM8:p.S26T,CNKSR2:p.P249L,CNTN5:p.I501T,COG5:p.H617R,COL15A1:p.K708R,COL6A3:p.A2378D,CRYGB:p.R143G,CSGALNACT2:p.L362F,CUL4A:p.I438F,CXXC1:p.Q156H,CYP19A1:p.F406L,DCLRE1B:p.F28I,DDX11:p.A376T,DDX11:p.E680D,DEPDC5:p.R1525Q,DLC1:p.S741T,DNMT1:p.R995Q,DOCK11:p.Q169E,DSPP:p.D1047N,E2F7:p.I91S,EBF1:p.D353G,ECI2:p.K55R,EEF1A2:p.Y418S,EIF3J:p.A8G,EML6:p.K805R,EPAS1:p.S474T,EPRS:p.L1335I,ERICH1:p.E327K,FAM101B:p.L5P,FAM104A:p.M1R,FAM110D:p.R71H,FAM155A:p.Q95R,FAM186A:p.G1492E,FAM194B:p.Y139H,FAM21B:p.P1231S,FAM32A:p.K9R,FAM46B:p.H416R,FAM48B1:p.I499V,FAM48B1:p.A516P,FAM5C:p.S425W,FAM86C2P:p.C120Y,FBXL14:p.V48G,FRMPD3:p.Q832del,FRS2:p.L47S,GDF5:p.E105fs,GPNMB:p.C3fs,GPT2:p.R10P,H2AFV:p.Q125R,HDLBP:p.R503C,HERC2:p.R2129C,HIST1H2BJ:p.K13R,HLX:p.N231K,HMGB3:p.E198D,HSF4:p.R169W,HSF4:p.S491P,HYAL4:p.D222N,INO80E:p.P206fs,INTS4:p.S460A,IQCF6:p.R3H,ITPR1:p.M1569I,ITPR3:p.R1698G,KANSL3:p.G376E,KCNA4:p.E627del,KDM5A:p.P423S,KDM6A:p.Y362fs,KIAA0020:p.K63R,KIDINS220:p.N851S,KIT:p.W557G,KLHDC2:p.W321S,KRAS:p.A146T,KRAS:p.Q61H,KRAS:p.Q61L,KRAS:p.G12A,KRAS:p.G12R,KRBA1:p.R839G,KRTAP4−8:p.T63S,L2HGDH:p.P441del,LAMC3:p.P174Q,LHCGR:p.L16Q,LOC401296:p.L144M,LPHN2:p.F906I,LRP12:p.G310C,LTB4R:p.F73L,LTBP3:p.L35del,LUC7L3:p.S148T,LYPD4:p.T64K,MAMLD1:p.Q572L,MAP4K2:p.R341G,MAPK7:p.A501D,MAT2A:p.E166G,MED12L:p.C1292Y,MESP2:p.Q182E,MEX3C:p.R534S,MIER2:p.L131F,MLL5:p.Y66C,MLLT3:p.177_178SS>S,MMS19:p.D1005N,MRPS25:p.E119del,MSH6:p.D576A,MTIF3:p.G65E,MUC17:p.M1807T,MUC17:p.T2279N,MUC17:p.G2474S,MUC2:p.TTPSPP1475del,MUC2:p.T1568M,MUC2:p.T1580N,MUC2:p.T1704I,MUC2:p.T1706M,MUC4:p.H1117D,MUC5B:p.R1097H,MYEF2:p.K323E,MYEOV:p.L302H,MYH8:p.A785V,MYO1A:p.N584K,NAP1L3:p.P353R,NAV1:p.I1433M,NCAM1:p.E131G,NEB:p.D3107N,NEFH:p.V670E,NELL2:p.G170D,NHS:p.D1561N,NKD2:p.H447del,NSD1:p.T461R,NT5C3:p.A3P,NYAP1:p.P480S,OBSCN:p.A908T,OR10J1:p.R244Q,OR1S2:p.M298I,OR2L3:p.K294R,OR6K6:p.F311L,PABPC3:p.V325fs,PBX2:p.Y262F,PCDHB4:p.P255F,PCMTD1:p.V281A,PCP4L1:p.K64R,PDE3A:p.A98E,PDIA6:p.N56K,PDS5A:p.L1309F,PHLDA2:p.R28S,PIGR:p.V183G,PIK3CA:p.E545K,PIK3CD:p.C381R,PKD1:p.T938M,PLEKHM1:p.A895V,PLEKHN1:p.A600D,PLXND1:p.R367L,PMS2:p.K651R,PNMA3:p.E200G,POTEF:p.S112G,PRAMEF8:p.I448V,PRDM2:p.E278D,PRODH:p.L527V,PRPF31:p.R289W,PSME4:p.N495D,PTGR1:p.E40A,PTPRB:p.Q726H,RABGEF1:p.N207D,RAC1:p.P34R,RANBP17:p.M900I,REV3L:p.A30S,RFC3:p.I82N,RFC3:p.K296N,RIMBP3:p.Q1154R,RPL19:p.R151C,RPL5:p.R58fs,RPTN:p.M538I,RRAD:p.A278E,RYR1:p.D668Y,RYR2:p.L2023F,SAFB:p.G799V,SCRIB:p.G332V,SDK1:p.Y2146C,SEC16A:p.T443K,SEC31B:p.P905S,SELO:p.R565Q,SELP:p.A297T,SI:p.I1681K,SLC2A7:p.H268Q,SLC37A1:p.V528I,SLC38A1:p.G100R,SMARCA2:p.D1158A,SMARCA5:p.T156fs,SMC3:p.E970Q,SMG1:p.P2696H,SNRNP200:p.A2129G,SPIN2B:p.M150V,ST6GALNAC1:p.S354N,STAMBPL1:p.Y143H,STARD8:p.G662A,STON1−GTF2A1L:p.N451S,SYMPK:p.A336G,TAS2R8:p.W98C,TCHH:p.W1016R,TET1:p.T1472S,TIAM1:p.G247M,TNS1:p.P183S,TOR1AIP2:p.G146R,TPRX1:p.S216P,TPRX1:p.S200P,TRMT61A:p.S244I,TSPAN4:p.L92V,TTF1:p.Q530R,UBE2M:p.G131D,UBR5:p.R2517S,UGT2B11:p.R447I,UMODL1:p.M559I,UNC93A:p.V445A,USP46:p.Q137R,VWA2:p.G317D,VWA7:p.V792G,WASH3P:p.L187V,WNT5B:p.K327E,WRN:p.E510D,XDH:p.P410S,ZAN:p.S755P,ZC3H11A:p.I777T,ZC3H7A:p.C575S,ZDHHC11:p.H250Q,ZFHX4:p.D3239N,ZKSCAN3:p.K200A,ZMYM4:p.T367I,ZNF174:p.P353T,ZNF322:p.Y353C,ZNF592:p.K324Q,ZNF592:p.P500T,ZNF782:p.C145F,ZNF799:p.C453R,ZNF804B:p.P644S,及びZNRF3:p.R889Wからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも51.61%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項65に記載の医薬組成物。
- (a)前記対象の集団はTHCAに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、BRAF:p.V600E,NRAS:p.Q61R,HRAS:p.Q61R,NRAS:p.Q61K,OTUD4:p.T909I,HRAS:p.Q61K,NLRP6:p.E611G,AKT1:p.E17K,ANKMY1:p.N302I,ATP6V1A:p.L237P,CYP19A1:p.S113I,DCUN1D4:p.L275P,DGCR8:p.E518K,DLC1:p.S741T,DNAH10:p.C1853F,EIF1AX:p.G9D,FAM75D5:p.L222P,FCGRT:p.P40A,KRAS:p.Q61K,LMX1B:p.Q285del,MAS1L:p.R324G,MED15:p.S35I,MEGF6:p.Y393C,ODZ2:p.A1529V,OR5L1:p.R122H,OR6K6:p.F311L,OTX1:p.D315N,POTEE:p.S75G,SCN5A:p.D1978H,TOP2A:p.K1199E,及びTSG101:p.K265Rからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも69.88%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項67に記載の医薬組成物。
- (a)前記対象の集団はUCSに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、TP53:p.R248Q,ZNF814:p.D404E,BTN2A3P:p.P3S,FBXW7:p.R465C,FRG1B:p.G65E,MUC4:p.H4205Q,NBPF10:p.V99F,PIK3CA:p.E545K,PIK3CA:p.H1047R,PPP2R1A:p.P179R,DDX11L2:p.*128Q,FBXW7:p.R479Q,FRG1B:p.K13N,FRG1B:p.L52S,HSD17B7P2:p.N175S,KRAS:p.G12V,LOC283788:p.S37G,TP53:p.R273H,TP53:p.S241Y,ADAMTS12:p.E359K,BCL2L11:p.L187fs,CDC27:p.L460fs,CHEK2:p.K373E,ESPNP:p.W122fs,FBXW7:p.R689W,FBXW7:p.R505G,FBXW7:p.R465H,FCGBP:p.V4019M,FRG1B:p.I10T,FRG1B:p.D32V,FRG1B:p.R37K,KRAS:p.G12D,LOC100233156:p.R21C,LOC283788:p.I46M,LRP1B:p.L1392F,MAMLD1:p.Q572L,MST1P9:p.L319P,MUC4:p.A2390T,MUC4:p.G2172S,NBPF10:p.E3455K,PIK3CA:p.G106V,PODXL:p.28_30PSP>P,POTEC:p.R477Q,PPP2R1A:p.R183W,PPP2R1A:p.S219L,PTPN18:p.TG378del,RGPD3:p.N756D,RPL13AP20:p.G107R,SAMD4B:p.R477W,SMAP1:p.E169fs,TP53:p.H193R,TP53:p.H179R,TP53:p.R175H,TUBBP5:p.R119H,及びU2AF1:p.S34Fからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも16.07%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項69に記載の医薬組成物。
- (a)前記対象の集団はPAADに罹患しており、
(b)前記少なくとも1つの腫瘍特異的突然変異は、RBM14:p.AAAAAAA286del,KRAS:p.G12D,JMY:p.PPPPPPPPPPPP811del,RIOK1:p.D69del,LCE2A:p.SSGGCCGSSSGGCC47del,KRAS:p.G12V,C1QB:p.GPKGPMGPKGGPGAPGAP90del,ZFHX3:p.V777del,DBR1:p.541_542DD>D,AEBP1:p.K1133del,KRAS:p.G12R,RBM47:p.495_502AAAAAAAA>A,,AP3S1:p.K41fs,MLL2:p.AEGPHLSPQPEELHLSPQ792del,RFX1:p.386_401GGGGGGGGGGGGGGSG>G,AXDND1:p.EQ991del,HERC2P3:p.A803V,RGPD3:p.N756D,FNDC1:p.D1180del,ANAPC1:p.T537A,IRS4:p.21_22AA>A,GIGYF2:p.Q1005del,NCOA3:p.Q1253fs,SIK3:p.950_951QQ>Q,GPR6:p.AAAAATAAGGPDTGEWGPPA36del,NBPF12:p.D1323fs,SHROOM4:p.1156_1157EE>E,ZMIZ2:p.VAAAAATATATATAT153del,DGKK:p.PAPP41del,LZTS1:p.RTQDLEGALRTKGLEL432del,CASQ2:p.395_396DD>D,DCP1B:p.251_252insH,ESPNP:p.296_317PPPPSFPPPPPPPGTQLPPPPP>P,KBTBD6:p.T403K,NBPF16:p.D449fs,ANKRD36C:p.H438R,ESPN:p.PPPPPPSFPPPPPPPGTQLPP430del,FCGBP:p.A2493V,KRAS:p.Q61H,NCOA3:p.Q1276del,OR2T2:p.C203fs,TMCC1:p.Q565L,BCKDHA:p.G129fs,ESPNP:p.H64fs,GNAS:p.R844H,NBPF14:p.R25C,OGFOD1:p.G477fs,RBM12:p.P693S,SLC38A10:p.1071_1072II>I,SORBS2:p.P866S,TP53:p.R248W,TP53:p.R175H,及びUBAC1:p.E269delからなる群から選択される突然変異の任意の組み合わせを含む、
請求項1〜7のいずれか一項に記載の医薬組成物。 - 前記集団中の対象の少なくとも50%は前記少なくとも1つの腫瘍特異的突然変異を有する、請求項71に記載の医薬組成物。
- 前記組成物は、少なくとも2、3、4、5、6、7、8、9、10、11、12、13、14、15、16、17、18、19又は20のネオ抗原ペプチドを含む、請求項1〜72のいずれか一項に記載の医薬組成物。
- 前記組成物は15〜20のネオ抗原ペプチドを含む、請求項73に記載の医薬組成物。
- 各ネオ抗原ペプチドは約5〜約50アミノ酸長である、請求項1〜74のいずれか一項に記載の医薬組成物。
- 各腫瘍特異的ネオエピトープは500nM未満のKDでHLA−A、−B又は−Cに結合する、請求項1〜75のいずれか一項に記載の医薬組成物。
- 免疫原性組成物又はワクチン組成物である請求項1〜76のいずれか一項に記載の医薬組成物。
- 免疫調節薬又はアジュバントをさらに含む請求項77に記載の医薬組成物。
- 前記免疫調節薬又はアジュバントは、ポリICLC、1018 ISS、アルミニウム塩、Amplivax、AS15、BCG、CP−870,893、CpG7909、CyaA、dSLIM、GM−CSF、IC30、IC31、イミキモド、ImuFact IMP321、IS Patch、ISS、ISCOMATRIX、Juvlmmune、LipoVac、MF59、モノホスホリルリピドA、Montanide IMS 1312、Montanide ISA 206、Montanide ISA 50V、Montanide ISA−51、OK−432、OM−174、OM−197−MP−EC、ONTAK、PepTel(登録商標)、ベクター系、PLGAマイクロパーティクル、レシキモド、SRL172、ビロソーム及び他のウイルス様粒子、YF−17D、VEGFトラップ、R848、βグルカン、Pam3Cys、並びにAquila社のQS21 stimulonからなる群から選択される、請求項78に記載の医薬組成物。
- それを必要としている対象の腫瘍を処置する又は予防する方法であって、請求項1〜79のいずれか一項に記載の医薬組成物を前記対象に投与することを含む方法。
- 前記医薬組成物を追加の癌治療との併用療法として投与する、請求項80に記載の方法。
- 前記追加の治療はチェックポイント阻害剤である、請求項81に記載の方法。
- 前記追加の治療は、手術、化学療法又は標的療法である、請求項81に記載の方法。
- 予防的な癌処置の方法であって、
(a)それを必要としている患者のために抗癌剤を選択することであり、前記薬物を、イブルチニブ、エルロチニブ、イマチニブ、ゲフィチニブ、クリゾチニブ、トラスツズマブ、ベムラフェニブ、RAF/MEK阻害剤及び抗エストロゲン療法からなる群から選択する、選択すること、並びに
(b)請求項1〜79のいずれか一項に記載の医薬組成物を前記対象に予防的に投与することであり、前記少なくとも1つのネオ抗原ペプチドは、前記選択した抗癌剤と関連する薬物耐性突然変異に由来する、投与すること
を含む方法。 - それを必要としている対象の集団での腫瘍を処置する又は予防する方法であって、前記集団中の対象の少なくとも1%の発生率を有する腫瘍特異的突然変異を含む腫瘍特異的ネオエピトープを認識する細胞外リガンド結合ドメインを含む薬剤を対象に投与することを含む方法。
- 前記薬剤は、抗体、抗体断片、抗体薬物コンジュゲート、アプタマー、CAR又はT細胞受容体を含む、請求項85に記載の方法。
- 前記抗体又は抗体断片はヒト化されている、完全にヒト化されている、又はキメラである、請求項86に記載の方法。
- 前記抗体断片は、ナノボディ、Fab、Fab’、(Fab’)2、Fv、ScFv、二重特異性抗体、三重特異性抗体、四重特異性抗体、Bis−scFv、ミニボディ、Fab2又はFab3断片を含む、請求項86又は87に記載の方法。
- 前記腫瘍特異的突然変異は、表9において任意の集団に関して列挙された突然変異を含む、請求項85〜88のいずれか一項に記載の方法。
- 前記腫瘍特異的突然変異は、細胞外ドメインを含む遺伝子内である、請求項85〜88のいずれか一項に記載の方法。
- 前記腫瘍特異的突然変異は、FGFR3 S249C、ERBB3 V104M、EGFR L858R、MUC4 H4205Q、PDGFRA R483fs、TMEM52 23_26LLPL>L又はPODXL 28_30PSP>Pを含む、請求項90に記載の方法。
- 前記腫瘍特異的突然変異は前記細胞外ドメイン内である、請求項90に記載の方法。
- 前記腫瘍特異的突然変異はFGFR3 S249C又はERBB3 V104Mを含む、請求項92に記載の方法。
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