EP4282977A3 - Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques - Google Patents

Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques Download PDF

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Publication number
EP4282977A3
EP4282977A3 EP23195081.7A EP23195081A EP4282977A3 EP 4282977 A3 EP4282977 A3 EP 4282977A3 EP 23195081 A EP23195081 A EP 23195081A EP 4282977 A3 EP4282977 A3 EP 4282977A3
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European Patent Office
Prior art keywords
solid support
probes
nucleic acid
randomly located
biological specimen
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Granted
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EP23195081.7A
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German (de)
English (en)
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EP4282977A2 (fr
EP4282977C0 (fr
EP4282977B1 (fr
Inventor
Jonas FRISÉN
Patrik STÅHL
Joakim Lundeberg
Gordon M Cann
Leila Bazargan
Alex Aravanis
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
10X Genomics Sweden AB
Illumina Inc
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10X Genomics Sweden AB
Illumina Inc
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First worldwide family litigation filed litigation Critical https://patents.darts-ip.com/?family=55963288&utm_source=google_patent&utm_medium=platform_link&utm_campaign=public_patent_search&patent=EP4282977(A3) "Global patent litigation dataset” by Darts-ip is licensed under a Creative Commons Attribution 4.0 International License.
Application filed by 10X Genomics Sweden AB, Illumina Inc filed Critical 10X Genomics Sweden AB
Priority to EP23212100.4A priority Critical patent/EP4321627A3/fr
Publication of EP4282977A2 publication Critical patent/EP4282977A2/fr
Publication of EP4282977A3 publication Critical patent/EP4282977A3/fr
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Publication of EP4282977C0 publication Critical patent/EP4282977C0/fr
Publication of EP4282977B1 publication Critical patent/EP4282977B1/fr
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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6841In situ hybridisation
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6834Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034Isolating an individual clone by screening libraries
    • C12N15/1065Preparation or screening of tagged libraries, e.g. tagged microorganisms by STM-mutagenesis, tagged polynucleotides, gene tags
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing
    • C12Q1/6874Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01LCHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L2300/00Additional constructional details
    • B01L2300/08Geometry, shape and general structure
    • B01L2300/0861Configuration of multiple channels and/or chambers in a single devices
    • B01L2300/0877Flow chambers
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01LCHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L2300/00Additional constructional details
    • B01L2300/16Surface properties and coatings
    • B01L2300/161Control and use of surface tension forces, e.g. hydrophobic, hydrophilic
    • B01L2300/163Biocompatibility
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01LCHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L3/00Containers or dishes for laboratory use, e.g. laboratory glassware; Droppers
    • B01L3/50Containers for the purpose of retaining a material to be analysed, e.g. test tubes
    • B01L3/502Containers for the purpose of retaining a material to be analysed, e.g. test tubes with fluid transport, e.g. in multi-compartment structures
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01LCHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L3/00Containers or dishes for laboratory use, e.g. laboratory glassware; Droppers
    • B01L3/50Containers for the purpose of retaining a material to be analysed, e.g. test tubes
    • B01L3/505Containers for the purpose of retaining a material to be analysed, e.g. test tubes flexible containers not provided for above
    • B01L3/5055Hinged, e.g. opposable surfaces

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Genetics & Genomics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • General Engineering & Computer Science (AREA)
  • Molecular Biology (AREA)
  • Microbiology (AREA)
  • General Health & Medical Sciences (AREA)
  • Biochemistry (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Biophysics (AREA)
  • Immunology (AREA)
  • Biomedical Technology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Plant Pathology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Cell Biology (AREA)
EP23195081.7A 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques Active EP4282977B1 (fr)

Priority Applications (1)

Application Number Priority Date Filing Date Title
EP23212100.4A EP4321627A3 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques

Applications Claiming Priority (6)

Application Number Priority Date Filing Date Title
US201562145874P 2015-04-10 2015-04-10
PCT/EP2016/057355 WO2016162309A1 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques
EP22190953.4A EP4151748B1 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques
EP21164281.4A EP3901281B1 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques
EP19159432.4A EP3530752B1 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques
EP16721643.1A EP3280820B1 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques

Related Parent Applications (5)

Application Number Title Priority Date Filing Date
EP22190953.4A Division EP4151748B1 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques
EP22190953.4A Division-Into EP4151748B1 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques
EP19159432.4A Division EP3530752B1 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques
EP21164281.4A Division EP3901281B1 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques
EP16721643.1A Division EP3280820B1 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques

Related Child Applications (2)

Application Number Title Priority Date Filing Date
EP23212100.4A Division EP4321627A3 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques
EP23212100.4A Division-Into EP4321627A3 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques

Publications (4)

Publication Number Publication Date
EP4282977A2 EP4282977A2 (fr) 2023-11-29
EP4282977A3 true EP4282977A3 (fr) 2023-12-20
EP4282977C0 EP4282977C0 (fr) 2024-06-05
EP4282977B1 EP4282977B1 (fr) 2024-06-05

Family

ID=55963288

Family Applications (8)

Application Number Title Priority Date Filing Date
EP23212100.4A Pending EP4321627A3 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques
EP23195081.7A Active EP4282977B1 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques
EP21164322.6A Active EP3901282B1 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques
EP19159432.4A Active EP3530752B1 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques
EP16721643.1A Active EP3280820B1 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques
EP22190961.7A Active EP4119677B1 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques
EP21164281.4A Active EP3901281B1 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques
EP22190953.4A Active EP4151748B1 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques

Family Applications Before (1)

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EP23212100.4A Pending EP4321627A3 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques

Family Applications After (6)

Application Number Title Priority Date Filing Date
EP21164322.6A Active EP3901282B1 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques
EP19159432.4A Active EP3530752B1 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques
EP16721643.1A Active EP3280820B1 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques
EP22190961.7A Active EP4119677B1 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques
EP21164281.4A Active EP3901281B1 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques
EP22190953.4A Active EP4151748B1 (fr) 2015-04-10 2016-04-04 Analyse de plusieurs acides nucléiques spatialement différenciés de spécimens biologiques

Country Status (11)

Country Link
US (10) US10774374B2 (fr)
EP (8) EP4321627A3 (fr)
JP (1) JP6828007B2 (fr)
CN (2) CN113186256A (fr)
CA (1) CA2982146A1 (fr)
DK (2) DK3901281T3 (fr)
ES (4) ES2935860T3 (fr)
FI (1) FI3901281T3 (fr)
HK (1) HK1250245A1 (fr)
SG (1) SG11201707515SA (fr)
WO (1) WO2016162309A1 (fr)

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