MX2019003765A - Clasificacion de genes especificos de fenotipos/enfermedades utilizando estructuras de datos clasificados, de biblioteca de genes y basados en red. - Google Patents

Clasificacion de genes especificos de fenotipos/enfermedades utilizando estructuras de datos clasificados, de biblioteca de genes y basados en red.

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Publication number
MX2019003765A
MX2019003765A MX2019003765A MX2019003765A MX2019003765A MX 2019003765 A MX2019003765 A MX 2019003765A MX 2019003765 A MX2019003765 A MX 2019003765A MX 2019003765 A MX2019003765 A MX 2019003765A MX 2019003765 A MX2019003765 A MX 2019003765A
Authority
MX
Mexico
Prior art keywords
curated
phenotype
data structures
systems
network based
Prior art date
Application number
MX2019003765A
Other languages
English (en)
Inventor
Jung Marc
Ng Sam
R Delaney Joseph
Original Assignee
Illumina Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Illumina Inc filed Critical Illumina Inc
Publication of MX2019003765A publication Critical patent/MX2019003765A/es

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    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F16/00—Information retrieval; Database structures therefor; File system structures therefor
    • G06F16/20—Information retrieval; Database structures therefor; File system structures therefor of structured data, e.g. relational data
    • G06F16/24—Querying
    • G06F16/245—Query processing
    • G06F16/2457—Query processing with adaptation to user needs
    • G06F16/24578—Query processing with adaptation to user needs using ranking
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F17/00—Digital computing or data processing equipment or methods, specially adapted for specific functions
    • G06F17/10—Complex mathematical operations
    • G06F17/15—Correlation function computation including computation of convolution operations
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F17/00—Digital computing or data processing equipment or methods, specially adapted for specific functions
    • G06F17/10—Complex mathematical operations
    • G06F17/16—Matrix or vector computation, e.g. matrix-matrix or matrix-vector multiplication, matrix factorization
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B5/00—ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B5/00—ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
    • G16B5/20—Probabilistic models

Landscapes

  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Theoretical Computer Science (AREA)
  • Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Physics & Mathematics (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Evolutionary Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • Medical Informatics (AREA)
  • Molecular Biology (AREA)
  • Data Mining & Analysis (AREA)
  • Mathematical Physics (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • Mathematical Analysis (AREA)
  • Pure & Applied Mathematics (AREA)
  • Mathematical Optimization (AREA)
  • Computational Mathematics (AREA)
  • General Engineering & Computer Science (AREA)
  • Databases & Information Systems (AREA)
  • Genetics & Genomics (AREA)
  • Physiology (AREA)
  • Computing Systems (AREA)
  • Algebra (AREA)
  • Software Systems (AREA)
  • Computational Linguistics (AREA)
  • Probability & Statistics with Applications (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)

Abstract

La presente invención se refiere a métodos, sistemas y aparatos para capturar, integrar, organizar, navegar, y consultar datos a gran escala de plataformas de ensayos químicos y biológicos de alto rendimiento. Proporciona una infraestructura de metanálisis altamente eficiente para realizar consultas de investigación en una gran cantidad de estudios y experimentos de diferentes ensayos biológicos y químicos, tipos de datos y organismos, así como sistemas para formar y agregarlos a tal infraestructura. De acuerdo con diversas modalidades, métodos, sistemas a interfaces para identificar genes que están potencialmente asociados con un concepto biológico, químico o médico de interés.
MX2019003765A 2016-10-03 2017-10-03 Clasificacion de genes especificos de fenotipos/enfermedades utilizando estructuras de datos clasificados, de biblioteca de genes y basados en red. MX2019003765A (es)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US201662403206P 2016-10-03 2016-10-03
PCT/US2017/054977 WO2018067595A1 (en) 2016-10-03 2017-10-03 Phenotype/disease specific gene ranking using curated, gene library and network based data structures

Publications (1)

Publication Number Publication Date
MX2019003765A true MX2019003765A (es) 2019-09-26

Family

ID=60117816

Family Applications (1)

Application Number Title Priority Date Filing Date
MX2019003765A MX2019003765A (es) 2016-10-03 2017-10-03 Clasificacion de genes especificos de fenotipos/enfermedades utilizando estructuras de datos clasificados, de biblioteca de genes y basados en red.

Country Status (11)

Country Link
US (1) US10810213B2 (es)
EP (1) EP3520006B1 (es)
JP (1) JP2020502697A (es)
KR (1) KR20190077372A (es)
CN (1) CN109906486B (es)
AU (2) AU2017338775B2 (es)
CA (1) CA3039201A1 (es)
MX (1) MX2019003765A (es)
RU (1) RU2019110756A (es)
SG (1) SG11201902925PA (es)
WO (1) WO2018067595A1 (es)

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CN110016499B (zh) 2011-04-15 2023-11-14 约翰·霍普金斯大学 安全测序系统
ES2701742T3 (es) 2012-10-29 2019-02-25 Univ Johns Hopkins Prueba de Papanicolaou para cánceres de ovario y de endometrio
WO2017027653A1 (en) 2015-08-11 2017-02-16 The Johns Hopkins University Assaying ovarian cyst fluid
US11948662B2 (en) * 2017-02-17 2024-04-02 The Regents Of The University Of California Metabolite, annotation, and gene integration system and method
WO2019067092A1 (en) 2017-08-07 2019-04-04 The Johns Hopkins University METHODS AND SUBSTANCES FOR THE EVALUATION AND TREATMENT OF CANCER
EP3550568B8 (en) * 2018-04-07 2024-08-14 Tata Consultancy Services Limited Graph convolution based gene prioritization on heterogeneous networks
US11354591B2 (en) 2018-10-11 2022-06-07 International Business Machines Corporation Identifying gene signatures and corresponding biological pathways based on an automatically curated genomic database
WO2020077352A1 (en) * 2018-10-12 2020-04-16 Human Longevity, Inc. Multi-omic search engine for integrative analysis of cancer genomic and clinical data
KR102230156B1 (ko) * 2018-10-15 2021-03-19 연세대학교 산학협력단 네트워크 기반의 유전자 세트 증강 분석 방법을 이용한 약물 재창출 방법
CN109684286B (zh) * 2018-12-28 2021-10-22 中国科学院苏州生物医学工程技术研究所 数字期刊实验数据共享方法及系统、存储介质、电子设备
WO2020242975A1 (en) * 2019-05-24 2020-12-03 Northeastern University Chemical-disease perturbation ranking
CN110310708A (zh) * 2019-06-18 2019-10-08 广东省生态环境技术研究所 一种构建异化砷还原酶蛋白数据库的方法
CN110364266A (zh) * 2019-06-28 2019-10-22 深圳裕策生物科技有限公司 用于指导临床肿瘤个体化用药的数据库及其构建方法和装置
US20220319656A1 (en) * 2019-08-20 2022-10-06 Technion Research & Development Foundation Automated literature meta analysis using hypothesis generators and automated search
CN110797080A (zh) * 2019-10-18 2020-02-14 湖南大学 基于跨物种迁移学习预测合成致死基因
CN110729022B (zh) * 2019-10-24 2023-06-23 江西中烟工业有限责任公司 一种被动吸烟大鼠早期肝损伤模型建立方法及相关基因筛选方法
CN111028883B (zh) * 2019-11-20 2023-07-18 广州达美智能科技有限公司 基于布尔代数的基因处理方法、装置及可读存储介质
EP3855114A1 (en) * 2020-01-22 2021-07-28 Siemens Gamesa Renewable Energy A/S A method and an apparatus for computer-implemented analyzing of a road transport route
CN111540405B (zh) * 2020-04-29 2023-07-07 新疆大学 一种基于快速网络嵌入的疾病基因预测方法
JP7402140B2 (ja) * 2020-09-23 2023-12-20 株式会社日立製作所 登録装置、登録方法、および登録プログラム
CN112802546B (zh) * 2020-12-29 2024-05-03 中国人民解放军军事科学院军事医学研究院 一种生物状态表征方法、装置、设备及存储介质
TWI755261B (zh) * 2021-01-25 2022-02-11 沐恩生醫光電股份有限公司 基因評估裝置以及方法
US11823440B2 (en) 2021-08-19 2023-11-21 Rehrig Pacific Company Imaging system with unsupervised learning
CN115240772B (zh) * 2022-08-22 2023-08-22 南京医科大学 一种基于图神经网络的解析单细胞通路活性的方法

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JP2009520278A (ja) 2005-12-16 2009-05-21 ネクストバイオ 科学情報知識管理のためのシステムおよび方法
US9183349B2 (en) * 2005-12-16 2015-11-10 Nextbio Sequence-centric scientific information management
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CN101989297A (zh) * 2009-07-30 2011-03-23 陈越 用于计算机上的疾病基因相关药物发掘系统
CN102855398B (zh) 2012-08-28 2016-03-02 中国科学院自动化研究所 基于多源信息融合的疾病潜在关联基因的获取方法
US10072296B2 (en) * 2016-09-19 2018-09-11 The Charlotte Mecklenburg Hospital Authority Compositions and methods for sjögren's syndrome

Also Published As

Publication number Publication date
AU2022268283B2 (en) 2024-03-28
WO2018067595A1 (en) 2018-04-12
SG11201902925PA (en) 2019-05-30
EP3520006B1 (en) 2023-11-29
CN109906486B (zh) 2023-07-14
AU2022268283A1 (en) 2022-12-15
AU2017338775A1 (en) 2019-05-02
CN109906486A (zh) 2019-06-18
KR20190077372A (ko) 2019-07-03
US20180095969A1 (en) 2018-04-05
EP3520006A1 (en) 2019-08-07
AU2017338775B2 (en) 2022-08-11
US10810213B2 (en) 2020-10-20
CA3039201A1 (en) 2018-04-12
JP2020502697A (ja) 2020-01-23
RU2019110756A (ru) 2020-11-06

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