Classifications

• • A—HUMAN NECESSITIES
  • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
  • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
  • A61P35/00—Antineoplastic agents
• • A—HUMAN NECESSITIES
  • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
  • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
  • A61K31/00—Medicinal preparations containing organic active ingredients
  • A61K31/33—Heterocyclic compounds
  • A61K31/395—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
  • A61K31/55—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having seven-membered rings, e.g. azelastine, pentylenetetrazole
  • A61K31/551—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having seven-membered rings, e.g. azelastine, pentylenetetrazole having two nitrogen atoms, e.g. dilazep
  • A61K31/5513—1,4-Benzodiazepines, e.g. diazepam or clozapine
  • A61K31/5517—1,4-Benzodiazepines, e.g. diazepam or clozapine condensed with five-membered rings having nitrogen as a ring hetero atom, e.g. imidazobenzodiazepines, triazolam
• • A—HUMAN NECESSITIES
  • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
  • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
  • A61K45/00—Medicinal preparations containing active ingredients not provided for in groups A61K31/00 - A61K41/00
  • A61K45/06—Mixtures of active ingredients without chemical characterisation, e.g. antiphlogistics and cardiaca
• • A—HUMAN NECESSITIES
  • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
  • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
  • A61K47/00—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient
  • A61K47/50—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates
  • A61K47/51—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent
  • A61K47/68—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61K47/6801—Drug-antibody or immunoglobulin conjugates defined by the pharmacologically or therapeutically active agent
  • A61K47/6803—Drugs conjugated to an antibody or immunoglobulin, e.g. cisplatin-antibody conjugates
  • A61K47/68035—Drugs conjugated to an antibody or immunoglobulin, e.g. cisplatin-antibody conjugates the drug being a pyrrolobenzodiazepine
• • A—HUMAN NECESSITIES
  • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
  • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
  • A61K47/00—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient
  • A61K47/50—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates
  • A61K47/51—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent
  • A61K47/68—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61K47/6835—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment the modifying agent being an antibody or an immunoglobulin bearing at least one antigen-binding site
  • A61K47/6849—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment the modifying agent being an antibody or an immunoglobulin bearing at least one antigen-binding site the antibody targeting a receptor, a cell surface antigen or a cell surface determinant
• • A—HUMAN NECESSITIES
  • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
  • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
  • A61K47/00—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient
  • A61K47/50—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates
  • A61K47/51—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent
  • A61K47/68—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61K47/6889—Conjugates wherein the antibody being the modifying agent and wherein the linker, binder or spacer confers particular properties to the conjugates, e.g. peptidic enzyme-labile linkers or acid-labile linkers, providing for an acid-labile immuno conjugate wherein the drug may be released from its antibody conjugated part in an acidic, e.g. tumoural or environment
• • C—CHEMISTRY; METALLURGY
  • C07—ORGANIC CHEMISTRY
  • C07D—HETEROCYCLIC COMPOUNDS
  • C07D519/00—Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups C07D453/00 or C07D455/00

Definitions

• the present invention relates to pyrrolobenzodiazepines (PBDs) having a labile protecting group in the form of a linker to an antibody.
• PBDs pyrrolobenzodiazepines
• PBDs pyrrolobenzodiazepines
• Family members include abbeymycin (Hochlowski, et al., J. Antibiotics, 40, 145-148 (1987)), chicamycin (Konishi, et a/., J. Antibiotics, 37, 200-206 (1984)), DC-81 (Japanese Patent 58-180 487; Thurston, et al., Chem. Brit, 26, 767-772 (1990); Bose, et al., Tetrahedron, 48, 751 -758 (1992)), mazethramycin (Kuminoto, et al., J.
• PBDs are of the general structure:
• a particularly advantageous pyrrolobenzodiazepine compound is described by Gregson et al. (Chem. Commun. 1999, 797-798) as compound 1 , and by Gregson et al. (J. Med. Chem. 2001 , 44, 1 161 -1 174) as compound 4a.
• This compound also known as SG2000, is shown below:
• WO 2007/085930 describes the preparation of dimer PBD compounds having linker groups for connection to a cell binding agent, such as an antibody.
• the linker is present in the bridge linking the monomer PBD units of the dimer.
• Dimer PBD compounds having linker groups for connection to a cell binding agent, such as an antibody are described in WO 201 1/130598.
• the linker in these compounds is attached to one of the available N10 positions, and are generally cleaved by action of an enzyme on the linker group.
• ADC antibody-drug conjugates
• cytotoxic or cytostatic agents i.e. drugs to kill or inhibit tumor cells in the treatment of cancer
• cytotoxic or cytostatic agents i.e. drugs to kill or inhibit tumor cells in the treatment of cancer
• systemic administration of these unconjugated drug agents may result in unacceptable levels of toxicity to normal cells
• Efforts to design and refine ADC have focused on the selectivity of monoclonal antibodies (mAbs) as well as drug mechanism of action, drug-linking, drug/antibody ratio (loading), and drug-releasing properties (Junutula, et al., 2008b Nature Biotech., 26(8):925-932; Dornan et al (2009) Blood 1 14(13):2721 -2729; US 7521541 ; US 7723485; WO2009/052249; McDonagh (2006) Protein Eng. Design & Sel. 19(7): 299-307; Doronina et al (2006) Bioconj. Chem. 17:1 14-124; Erickson et al (2006) Cancer Res.
• mAbs monoclonal antibodies
• Drug moieties may impart their cytotoxic and cytostatic effects by mechanisms including tubulin binding, DNA binding, proteasome and/or topoisomerase inhibition. Some cytotoxic drugs tend to be inactive or less active when conjugated to large antibodies or protein receptor ligands.
• the present inventors have developed particular PBD dimers with linking groups for the formation of PBD conjugates with cell binding agents, and in particular PBD antibody conjugates.
• a first aspect of the present invention provides a conjugate of formula (I):
• Ab is an antibody, or an active fragment thereof; DL is
• X is selected from the group comprising: a single bond, -CH2- and -C2H4-;
• n is from 1 to 8;
• n 0 or 1 ;
• R 7 is either methyl or phenyl
• R 2 is selected the group consisting of:
• each of R 21 , R 22 and R 23 are independently selected from H, C1-3 saturated alkyl, C2-3 alkenyl, C2-3 alkynyl and cyclopropyl, where the total number of carbon atoms in the R 12 roup is no more than 5;
• R 25a and R 25b are H and the other is selected from: phenyl, which phenyl is optionally substituted by a group selected from halo, methyl, methoxy; pyridyl; and thiophenyl; and (if) , where R 24 is selected from: H; C1-3 saturated alkyl; C2-3 alkenyl; C2-3 alkynyl; cyclopropyl; phenyl, which phenyl is optionally substituted by a group selected from halo, methyl, methoxy; pyridyl; and thiophenyl;
• R 2 is , where R 26a and R 26b are independently selected from H, F, C1-4 saturated alkyl,
• C2-3 alkenyl which alkyl and alkenyl groups are optionally substituted by a group selected from C1-4 alkyl amido and C1-4 alkyl ester; or, when one of R 26a and R 26b is H, the other is selected from nitrile and a C1-4 alkyl ester;
• R 12 is selected the group consisting of: (ia) C5-10 aryl group, optionally substituted by one or more substituents selected from the group comprising: halo, nitro, cyano, ether, carboxy, ester, C1-7 alkyl, C3-7 heterocyclyl and bis-oxy-Ci-3 alkylene;
• each of R , R 32 and R 33 are independently selected from H, Ci saturated alkyl, C2-3 alkenyl, C2-3 alkynyl and cyclopropyl, where the total number of carbon atoms in the R 12 group is no more than 5;
• R 35a and R 35b are H and the other is selected from phenyl, which phenyl is optionally substituted by a group selected from halo, methyl, methoxy; pyridyl; and thiophenyl; and
• R 24 is selected from: H; C1-3 saturated alkyl; C2-3 alkenyl; C2-3 alkynyl; cyclopropyl; phenyl, which phenyl is optionally substituted by a group selected from halo, methyl, methoxy; pyridyl; and thiophenyl;
• R 12 when there is a single bond between C2' and C3', R 12 is , where R 36a and R 36b are independently selected from H, F, C1-4 saturated alkyl,
• C2-3 alkenyl which alkyl and alkenyl groups are optionally substituted by a group selected from C1-4 alkyl amido and C1-4 alkyl ester; or, when one of R 36a and R 36b is H, the other is selected from nitrile and a C1-4 alkyl ester;
• a further aspect of the invention is a drug linker or formula:
• Fig. 1 shows the binding of a conjugate according to the invention to the relevant antigen
• Fig. 2 shows the in vivo efficacy of a conjugate
• Fig. 3 shows the in vivo efficacy of conjugates
• Fig. 4 shows the in vivo efficacy of conjugates
• Fig. 5 shows the in vivo efficacy of conjugates on a patient-derived xenograft
• Fig. 6 shows the in vitro cytotoxicity of conjugates
• Fig. 7 shows the in vivo efficacy of conjugates
• Fig. 8 shows the in vitro cytotoxicity of conjugates
• Fig. 9 shows the in vivo efficacy of conjugates
• Fig. 10 shows the in vivo anti-tumor activity of a conjugate.
• the present invention provides a PBD dimer with a linker connected through the N10 position on one of the PBD moieties conjugated to an antibody as defined below.
• the present invention is suitable for use in providing a PBD compound to a preferred site in a subject.
• the conjugate allows the release of an active PBD compound that does not retain any part of the linker. There is no stub present that could affect the reactivity of the PBD com ound. Thus the conjugate of formula (I) would would release the compound RelA:
• the speficied link between the PBD dimer and the antibody in the present invention is preferably stable extracellularly.
• the antibody-drug conjugate (ADC) is preferably stable and remains intact, i.e. the antibody remains linked to the drug moiety.
• the linkers are stable outside the target cell and may be cleaved at some efficacious rate inside the cell.
• An effective linker will: (i) maintain the specific binding properties of the antibody; (ii) allow intracellular delivery of the conjugate or drug moiety; (iii) remain stable and intact, i.e.
• Stability of the ADC may be measured by standard analytical techniques such as mass spectroscopy, HPLC, and the separation/analysis technique LC/MS. Delivery of the compounds of formulae RelA is achieved at the desired activation site of the conjugate of formula (I) by the action of an enzyme, such as cathepsin, on the linking group, and in particular on the valine-alanine dipeptide moiety.
• an enzyme such as cathepsin
• C-i-12 alkyl refers to a monovalent moiety obtained by removing a hydrogen atom from a carbon atom of a hydrocarbon compound having from 1 to 12 carbon atoms, which may be aliphatic or alicyclic, and which may be saturated or unsaturated (e.g. partially unsaturated, fully unsaturated).
• C1-4 alkyl as used herein, pertains to a monovalent moiety obtained by removing a hydrogen atom from a carbon atom of a hydrocarbon compound having from 1 to 4 carbon atoms, which may be aliphatic or alicyclic, and which may be saturated or unsaturated (e.g. partially unsaturated, fully unsaturated).
• alkyl includes the sub-classes alkenyl, alkynyl, cycloalkyl, etc., discussed below.
• saturated alkyl groups include, but are not limited to, methyl (Ci), ethyl (C2), propyl (C3), butyl (C 4 ), pentyl (C 5 ), hexyl (Ce) and heptyl (C 7 ).
• saturated linear alkyl groups include, but are not limited to, methyl (Ci), ethyl (C2), n-propyl (C3), n-butyl (C 4 ), n-pentyl (amyl) (C 5 ), n-hexyl (Ce) and n-heptyl (C 7 ).
• saturated branched alkyl groups include iso-propyl (C3), iso-butyl (C 4 ), sec-butyl (C 4 ), tert-butyl (C 4 ), iso-pentyl (C 5 ), and neo-pentyl (C 5 ).
• C2-12 Alkenyl The term "C2-12 alkenyl" as used herein, pertains to an alkyl group having one or more carbon-carbon double bonds.
• C2-12 alkynyl The term "C2-12 alkynyl" as used herein, pertains to an alkyl group having one or more carbon-carbon triple bonds.
• unsaturated alkynyl groups include, but are not limited to, ethynyl (-C ⁇ CH) and 2-propynyl (propargyl, -CH2-C ⁇ CH).
• C3-12 cycloalkyl refers to an alkyl group which is also a cyclyl group; that is, a monovalent moiety obtained by removing a hydrogen atom from an alicyclic ring atom of a cyclic hydrocarbon (carbocyclic) compound, which moiety has from 3 to 7 carbon atoms, including from 3 to 7 ring atoms.
• cycloalkyl groups include, but are not limited to, those derived from:
• norcarane (C7) norpinane (C7), norbornane (C7).
• C3-20 heterocyclyl refers to a monovalent moiety obtained by removing a hydrogen atom from a ring atom of a heterocyclic compound, which moiety has from 3 to 20 ring atoms, of which from 1 to 10 are ring heteroatoms.
• each ring has from 3 to 7 ring atoms, of which from 1 to 4 are ring heteroatoms.
• C3-20, C3-7, C5-6, etc. denote the number of ring atoms, or range of number of ring atoms, whether carbon atoms or heteroatoms.
• C 5 -6heterocyclyl as used herein, pertains to a heterocyclyl group having 5 or 6 ring atoms.
• monocyclic heterocyclyl groups include, but are not limited to, those derived from:
• Ni aziridine (C3), azetidine (C 4 ), pyrrolidine (tetrahydropyrrole) (C5), pyrroline (e.g.,
• O1 oxirane (C3), oxetane (C 4 ), oxolane (tetrahydrofuran) (C5), oxole (dihydrofuran) (C5), oxane (tetrahydropyran) ⁇ Ce), dihydropyran ⁇ Ce), pyran ⁇ Ce), oxepin (C7);
• O2 dioxolane (C5), dioxane ⁇ Ce), and dioxepane (C7);
• N2 imidazolidine (C5), pyrazolidine (diazolidine) (C5), imidazoline (C5), pyrazoline
• N1O1 tetrahydrooxazole (C5), dihydrooxazole (C5), tetrahydroisoxazole (C5),
• dihydroisoxazole (C5) morpholine ⁇ Ce), tetrahydrooxazine ⁇ Ce), dihydrooxazine ⁇ Ce), oxazine (Ce);
• N1S1 thiazoline (C5), thiazolidine (C5), thiomorpholine ⁇ Ce);
• O1S1 oxathiole (C5) and oxathiane (thioxane) ⁇ Ce); and,
• N1O1S1 oxathiazine (C 6 ).
• substituted monocyclic heterocyclyl groups include those derived from saccharides, in cyclic form, for example, furanoses (C5), such as arabinofuranose, lyxofuranose, ribofuranose, and xylofuranse, and pyranoses (Ce), such as allopyranose, altropyranose, glucopyranose, mannopyranose, gulopyranose, idopyranose,
• C5-20 aryl refers to a monovalent moiety obtained by removing a hydrogen atom from an aromatic ring atom of an aromatic compound, which moiety has from 3 to 20 ring atoms.
• C5-7 aryl pertains to a monovalent moiety obtained by removing a hydrogen atom from an aromatic ring atom of an aromatic compound, which moiety has from 5 to 7 ring atoms and the term “C5-10 aryl”, as used herein, pertains to a monovalent moiety obtained by removing a hydrogen atom from an aromatic ring atom of an aromatic compound, which moiety has from 5 to 10 ring atoms.
• each ring has from 5 to 7 ring atoms.
• the prefixes e.g. C3-20, C5-7, C5-6, C5-10, etc.
• the term "C 5 -6 aryl” as used herein, pertains to an aryl group having 5 or 6 ring atoms.
• the ring atoms may be all carbon atoms, as in "carboaryl groups”.
• carboaryl groups include, but are not limited to, those derived from benzene (i.e. phenyl) ⁇ Ce), naphthalene (C10), azulene (C10), anthracene (C14), phenanthrene (C14), naphthacene (Cis), and pyrene (C16).
• aryl groups which comprise fused rings, at least one of which is an aromatic ring include, but are not limited to, groups derived from indane (e.g. 2,3-dihydro-1 H-indene) (C9), indene (C9), isoindene (C9), tetraline (1 ,2,3,4-tetrahydronaphthalene (C10),
• the ring atoms may include one or more heteroatoms, as in "heteroaryl groups".
• heteroaryl groups include, but are not limited to, those derived from:
• N1O1 oxazole (C5), isoxazole (C5), isoxazine ⁇ Ce);
• N2O1 oxadiazole (furazan) (C5);
• N3O1 oxatriazole (C5);
• N1S1 thiazole (C 5 ), isothiazole (C 5 );
• N2 imidazole (1 ,3-diazole) (C5), pyrazole (1 ,2-diazole) (C5), pyridazine (1 ,2-diazine) ⁇ Ce), pyrimidine (1 ,3-diazine) ⁇ Ce) (e.g., cytosine, thymine, uracil), pyrazine (1 ,4-diazine) ⁇ Ce);
• N3 triazole (C5), triazine ⁇ Ce);
• heteroaryl which comprise fused rings, include, but are not limited to:
• Cg (with 2 fused rings) derived from benzofuran (O1), isobenzofuran (O1), indole (Ni), isoindole (Ni), indolizine (Ni), indoline (Ni), isoindoline (Ni), purine (N 4 ) (e.g., adenine, guanine), benzimidazole (N2), indazole (N2), benzoxazole (N1O1), benzisoxazole (N1O1), benzodioxole (O2), benzofurazan (N2O1), benzotriazole (N3), benzothiofuran (Si),
• benzothiazole N1S1, benzothiadiazole (N2S); Cio (with 2 fused rings) derived from chromene (Oi), isochromene (Oi), chroman (Oi), isochroman (Oi), benzodioxan (O2), quinoline (Ni), isoquinoline (Ni), quinolizine (Ni), benzoxazine (N1O1), benzodiazine (N2), pyridopyridine (N2), quinoxaline (N2), quinazoline (N2), cinnoline (N2), phthalazine (N2), naphthyridine (N2), pteridine (N 4 );
• Ci3 (with 3 fused rings) derived from carbazole (Ni), dibenzofuran (Oi),
• Ci 4 (with 3 fused rings) derived from acridine (Ni), xanthene (Oi), thioxanthene (Si), oxanthrene (O2), phenoxathiin (O1S1), phenazine (N2), phenoxazine (N1O1), phenothiazine (N1S1), thianthrene (S2), phenanthridine (Ni), phenanthroline (N2), phenazine (N2).
• Halo -F, -CI, -Br, and -I. Hydroxy: -OH.
• Ether: -OR wherein R is an ether substituent, for example, a Ci-7 alkyl group (also referred to as a Ci-7 alkoxy group, discussed below), a C3-20 heterocyclyl group (also referred to as a C3-20 heterocyclyloxy group), or a Cs-2o aryl group (also referred to as a C5-2o aryloxy group), preferably a Ci-7alkyl group.
• Alkoxy -OR, wherein R is an alkyl group, for example, a C1-7 alkyl group.
• C1-7 alkoxy groups include, but are not limited to, -OMe (methoxy), -OEt (ethoxy), -O(nPr) (n- propoxy), -O(iPr) (isopropoxy), -O(nBu) (n-butoxy), -O(sBu) (sec-butoxy), -O(iBu)
• R 1 and R 2 are independently amino substituents, for example, hydrogen, a C1-7 alkyl group (also referred to as Ci-7 alkylamino or di-Ci-7 alkylamino), a C3-20 heterocyclyl group, or a Cs-2o aryl group, preferably H or a C1-7 alkyl group, or, in the case of a "cyclic" amino group, R 1 and R 2 , taken together with the nitrogen atom to which they are attached, form a heterocyclic ring having from 4 to 8 ring atoms.
• R 1 and R 2 are independently amino substituents, for example, hydrogen, a C1-7 alkyl group (also referred to as Ci-7 alkylamino or di-Ci-7 alkylamino), a C3-20 heterocyclyl group, or a Cs-2o aryl group, preferably H or a C1-7 alkyl group, or, in the case of a "cyclic" amino group, R 1 and R 2 ,
• Amino groups may be primary (-NH2), secondary (-NHR 1 ), or tertiary (-NHR 1 R 2 ), and in cationic form, may be quaternary (- + NR 1 R 2 R 3 ).
• amino groups include, but are not limited to, -IMH2, -IMHCH3, -NHC(CH 3 ) 2 , -N(CH 3 ) 2 , -N(CH 2 CH 3 ) 2 , and -NHPh.
• Examples of cyclic amino groups include, but are not limited to, aziridino, azetidino, pyrrolidino, piperidino, piperazino, morpholino, and thiomorpholino.
• antibody herein is used in the broadest sense and specifically covers monoclonal antibodies, polyclonal antibodies, dimers, multimers, multispecific antibodies ⁇ e.g., bispecific antibodies), and antibody fragments, so long as they exhibit the desired biological activity (Miller et al (2003) Jour, of Immunology 170:4854-4861 ).
• Antibodies may be murine, human, humanized, chimeric, or derived from other species.
• An antibody is a protein generated by the immune system that is capable of recognizing and binding to a specific antigen.
• a target antigen generally has numerous binding sites, also called epitopes, recognized by CDRs on multiple antibodies. Each antibody that specifically binds to a different epitope has a different structure. Thus, one antigen may have more than one corresponding antibody.
• An antibody includes a full-length immunoglobulin molecule or an immunologically active portion of a full-length immunoglobulin molecule, i.e., a molecule that contains an antigen binding site that immunospecifically binds an antigen of a target of interest or part thereof, such targets including but not limited to, cancer cell or cells that produce autoimmune antibodies associated with an autoimmune disease.
• a full-length immunoglobulin molecule or an immunologically active portion of a full-length immunoglobulin molecule i.e., a molecule that contains an antigen binding site that immunospecifically binds an antigen of a target of interest or part thereof, such targets including but not limited to, cancer cell or cells that produce autoimmune antibodies associated with an autoimmune disease.
• immunoglobulin can be of any type (e.g. IgG, IgE, IgM, IgD, and IgA), class (e.g. lgG1 , lgG2, lgG3, lgG4, lgA1 and lgA2) or subclass of immunoglobulin molecule.
• the immunoglobulins can be derived from any species, including human, murine, or rabbit origin.
• Antibody fragments comprise a portion of a full length antibody, generally the antigen binding or variable region thereof.
• antibody fragments include Fab, Fab', F(ab')2, and scFv fragments; diabodies; linear antibodies; fragments produced by a Fab expression library, anti-idiotypic (anti-Id) antibodies, CDR (complementary determining region), and epitope-binding fragments of any of the above which immunospecifically bind to cancer cell antigens, viral antigens or microbial antigens, single-chain antibody molecules; and multispecific antibodies formed from antibody fragments.
• monoclonal antibody refers to an antibody obtained from a population of substantially homogeneous antibodies, i.e. the individual antibodies comprising the population are identical except for possible naturally occurring mutations that may be present in minor amounts. Monoclonal antibodies are highly specific, being directed against a single antigenic site. Furthermore, in contrast to polyclonal antibody preparations which include different antibodies directed against different determinants (epitopes), each monoclonal antibody is directed against a single determinant on the antigen. In addition to their specificity, the monoclonal antibodies are advantageous in that they may be
• the modifier "monoclonal” indicates the character of the antibody as being obtained from a substantially homogeneous population of antibodies, and is not to be construed as requiring production of the antibody by any particular method.
• the monoclonal antibodies to be used in accordance with the present invention may be made by the hybridoma method first described by Kohler et al (1975) Nature 256:495, or may be made by recombinant DNA methods (see, US 4816567).
• the monoclonal antibodies may also be isolated from phage antibody libraries using the techniques described in Clackson et al (1991 ) Nature, 352:624-628; Marks et al (1991 ) J. Mol.
• the monoclonal antibodies herein specifically include "chimeric" antibodies in which a portion of the heavy and/or light chain is identical with or homologous to corresponding sequences in antibodies derived from a particular species or belonging to a particular antibody class or subclass, while the remainder of the chain(s) is identical with or homologous to corresponding sequences in antibodies derived from another species or belonging to another antibody class or subclass, as well as fragments of such antibodies, so long as they exhibit the desired biological activity (US 4816567; and Morrison et al (1984) Proc. Natl. Acad. Sci.
• Chimeric antibodies include "primatized" antibodies comprising variable domain antigen-binding sequences derived from a non-human primate (e.g. Old World Monkey or Ape) and human constant region sequences.
• a non-human primate e.g. Old World Monkey or Ape
• human constant region sequences e.g. Old World Monkey or Ape
• an “intact antibody” herein is one comprising a VL and VH domains, as well as a light chain constant domain (CL) and heavy chain constant domains, CH1 , CH2 and CH3.
• the constant domains may be native sequence constant domains (e.g. human native sequence constant domains) or amino acid sequence variant thereof.
• the intact antibody may have one or more "effector functions" which refer to those biological activities attributable to the Fc region (a native sequence Fc region or amino acid sequence variant Fc region) of an antibody. Examples of antibody effector functions include C1 q binding; complement dependent cytotoxicity; Fc receptor binding; antibody-dependent cell-mediated cytotoxicity (ADCC); phagocytosis; and down regulation of cell surface receptors such as B cell receptor and BCR.
• intact antibodies can be assigned to different "classes.” There are five major classes of intact antibodies: IgA, IgD, IgE, IgG, and IgM, and several of these may be further divided into “subclasses” (isotypes), e.g., lgG1 , lgG2, lgG3, lgG4, IgA, and lgA2.
• the heavy-chain constant domains that correspond to the different classes of antibodies are called ⁇ , ⁇ , ⁇ , ⁇ , and ⁇ , respectively.
• the subunit structures and three-dimensional configurations of different classes of immunoglobulins are well known.
• a “humanized antibody” refers to a polypeptide comprising at least a portion of a modified variable region of a human antibody wherein a portion of the variable region, preferably a portion substantially less than the intact human variable domain, has been substituted by the corresponding sequence from a non-human species and wherein the modified variable region is linked to at least another part of another protein, preferably the constant region of a human antibody.
• humanized antibodies includes human antibodies in which one or more complementarity determining region ("CDR") amino acid residues and/or one or more framework region ("FW” or “FR”) amino acid residues are substituted by amino acid residues from analogous sites in rodent or other non-human antibodies.
• CDR complementarity determining region
• FW framework region
• FR framework region
• humanized antibody also includes an immunoglobulin amino acid sequence variant or fragment thereof that comprises an FR having substantially the amino acid sequence of a human immunoglobulin and a CDR having substantially the amino acid sequence of a non- human immunoglobulin.
• Humanized forms of non-human (e.g., murine) antibodies are chimeric antibodies that contain minimal sequence derived from non-human immunoglobulin. Or, looked at another way, a humanized antibody is a human antibody that also contains selected sequences from non-human (e.g. murine) antibodies in place of the human sequences.
• a humanized antibody can include conservative amino acid substitutions or non-natural residues from the same or different species that do not significantly alter its binding and/or biologic activity.
• Such antibodies are chimeric antibodies that contain minimal sequence derived from non- human immunoglobulins.
• the humanized antibodies are human immunoglobulins (recipient antibody) in which residues from a complementary-determining region (CDR) of the recipient antibody are replaced by residues from a CDR of a non-human species (donor antibody) such as mouse, rat, camel, bovine, goat, or rabbit having the desired properties (in effect, the non- human CDRs are 'grafted' onto the human framework).
• CDR complementary-determining region
• donor antibody such as mouse, rat, camel, bovine, goat, or rabbit having the desired properties (in effect, the non- human CDRs are 'grafted' onto the human framework).
• framework region (FR) residues of the human immunoglobulin are replaced by corresponding non-human residues (this may happen when, for example, a particular FR residue has significant effect on antigen binding).
• humanized antibodies can comprise residues that are found neither in the recipient antibody nor in the imported CDR or framework sequences.
• a humanized antibody will comprise all of at least one, and in one aspect two, variable domains, in which all or all of the hypervariable loops correspond to those of a non-human immunoglobulin and all or substantially all of the FR regions are those of a human immunoglobulin sequence.
• the humanized antibody optionally also will comprise at least a portion of an immunoglobulin constant region (Fc), or that of a human immunoglobulin.
• the method consists of combining the VH or VL domain of a given non-human antibody specific for a particular epitope with a human VH or VL library and specific human V domains are selected against the antigen of interest. This selected human VH is then combined with a VL library to generate a completely human VHxVL combination.
• the method is described in Nature Biotechnology (N.Y.) 12, (1994) 899-903.
• two or more segments of amino acid sequence from a human antibody are combined within the final antibody molecule. They are constructed by combining multiple human VH and VL sequence segments in combinations which limit or avoid human T cell epitopes in the final composite antibody V regions. Where required, T cell epitopes are limited or avoided by, exchanging V region segments contributing to or encoding a T cell epitope with alternative segments which avoid T cell epitopes. This method is described in US 2008/0206239 A1 .
• This method involves the removal of human (or other second species) T-cell epitopes from the V regions of the therapeutic antibody (or other molecule).
• the therapeutic antibodies V-region sequence is analysed for the presence of MHC class II- binding motifs by, for example, comparison with databases of MHC-binding motifs (such as the "motifs" database hosted at www.wehi.edu.au).
• MHC class II- binding motifs may be identified using computational threading methods such as those devised by Altuvia et al. (J. Mol. Biol. 249 244-250 (1995)); in these methods, consecutive overlapping peptides from the V-region sequences are testing for their binding energies to MHC class II proteins.
• This data can then be combined with information on other sequence features which relate to successfully presented peptides, such as amphipathicity, Rothbard motifs, and cleavage sites for cathepsin B and other processing enzymes.
• T-cell epitopes Once potential second species (e.g. human) T-cell epitopes have been identified, they are eliminated by the alteration of one or more amino acids.
• the modified amino acids are usually within the T-cell epitope itself, but may also be adjacent to the epitope in terms of the primary or secondary structure of the protein (and therefore, may not be adjacent in the primary structure). Most typically, the alteration is by way of substitution but, in some circumstances amino acid addition or deletion will be more appropriate.
• This method involves:
• step (c) defining for the non-human antibody to be humanized, a set of heavy and light chain surface exposed amino acid residues using the set of framework positions generated in step (b);
• step (d) identifying from human antibody amino acid sequences a set of heavy and light chain surface exposed amino acid residues that is most closely identical to the set of surface exposed amino acid residues defined in step (c), wherein the heavy and light chain from the human antibody are or are not naturally paired;
• step (e) substituting, in the amino acid sequence of the non-human antibody to be humanized, the set of heavy and light chain surface exposed amino acid residues defined in step (c) with the set of heavy and light chain surface exposed amino acid residues identified in step (d); (f) constructing a three-dimensional model of the variable region of the non-human antibody resulting from the substituting specified in step (e);
• step (h) changing any residues identified in step (g) from the human to the original non- human amino acid residue to thereby define a non-human antibody humanizing set of surface exposed amino acid residues; with the proviso that step (a) need not be conducted first, but must be conducted prior to step (g).
• the method compares the non-human sequence with the functional human germline gene repertoire. Those human genes encoding canonical structures identical or closely related to the non-human sequences are selected. Those selected human genes with highest homology within the CDRs are chosen as FR donors. Finally, the non-human CDRs are grafted onto these human FRs. This method is described in patent WO 2005/079479 A2.
• This method compares the non-human (e.g. mouse) sequence with the repertoire of human germline genes and the differences are scored as Human String Content (HSC) that quantifies a sequence at the level of potential MHC/T-cell epitopes.
• HSC Human String Content
• the target sequence is then humanized by maximizing its HSC rather than using a global identity measure to generate multiple diverse humanized variants (described in Molecular Immunology, 44, (2007) 1986-1998).
• the CDRs of the non-human antibody are fused in-frame to cDNA pools encompassing all known heavy and light chain human germline gene frameworks. Humanised antibodies are then selected by e.g. panning of the phage displayed antibody library. This is described in Methods 36, 43-60 (2005).
• the antibody may prepared for conjugation with the drug linker through a three step process: (1 ) Expression of antibody (Ab) bearing the core N-glycan in a suitable expression system (e.g. a CHO cell line).
• a suitable expression system e.g. a CHO cell line.
• the core N-glycan is typically conjugated to Asn-297 of the heavy chain according to the numbering system of Kabat;
• Glycan trimming of Ab may be performed with endoS from Streptococcus pyogenes
• deglycosylated IgG is then concentrated and washed with 10 mM MnCh and 25 mM Tris-HCI pH 8.0 using an Amicon Ultra-0.5, Ultracel-10 Membrane (Milli pore).
• Completion of the trimming reaction may be assessed by subjecting a sample to MS analysis. After deconvolution of peaks, a typical mass spectrum of a successful trimming reaction shows one peak of the light chain and two peaks of the heavy chain. The two peaks of heavy chain belong to one major product (90% of total heavy chain), resulting from core GlcNAc(Fuc) substituted Ab, and a minor product (10% of total heavy chain), resulting from deglycosylated Ab.
• the azide group which serves as the conjugation point for the drug linker is a side chain of a modified UDP-galactose residue.
• An example modified UDP-galactose residue is a-UDP-2- (2'-azido-2',2'-difluoroacetamido)-2-deoxy-D-galactose (UDP-F2-GalNAz), whose synthesis is described in Examples 1 and 8 - 1 1 of WO2016/053107.
• Transfer of the modified UDP-galactose residue to the core GlcNAc of Ab is achieved through the enzymatic activity of a Galactose Transferase (GalT) or Galactose-N-acetyl Transferase (GalNAcT) enzyme.
• GalT Galactose Transferase
• GalNAcT Galactose-N-acetyl Transferase
• the enzyme incorporates the Y289L and/or the C342T substitutions, which improves the transfer activity of the enzyme with the modified UDP-galactose residue (see van Geel, supra). Sequences and purifications of suitable enzymes are disclosed in Examples 12 and 13 of
• Enzymatic introduction of GalNAc derivatives onto IgG may be effected with a GalNAcT enzyme.
• the deglycosylated Ab (prepared as described above, 10 mg/mL) is incubated with a modified UDP-GalNAc derivative (e.g. an azido-modified sugar-UDP derivative) (0.4 mM) and GalNAcT (1 mg/mL) in 10 mM MnCh and 25 mM TrisHCI pH 8.0 for 16 hours at 30 °C.
• the functionalized Ab e.g. azido-functionalized IgG
• protein A agarose 40 ⁇ per mg IgG
• the protein A agarose is washed three times with PBS and the IgG eluted with 100 mM glycine-HCI pH 2.7.
• the eluted IgG was neutralized with 1 M Tris-HCI pH 8.0 and concentrated and washed with PBS using an Amicon Ultra-0.5, Ultracel-10 Membrane (Millipore) to a concentration of 15-20 mg/mL.
• Completion of the modified galactose residue may be assessed by subjecting a sample to MS analysis. After protein A affinity purification, a small sample of the product may be reduced with DTT and subsequently subjected to MS analysis.
• a typical mass spectrum of a successful transfer reaction shows the formation of a one major product of (90% of total heavy chain), resulting from modified galactose transfer to core GlcNAc(Fuc) substituted Ab, and a minor product ( ⁇ 10% of total heavy chain), resulting from modified galactose transfer to core GlcNAc (without Fucose) substituted Ab.
• cell binding agents include those agents described for use in WO 2007/085930, which is incorporated herein.
• Tumour-associate antigens and cognate antibodies for use in embodiments of the present invention are listed below.
• BMPR1B bone morphogenetic protein receptor-type IB
• WO2004/032842 (Example IV); WO2003/042661 (Claim 12); WO2003/016475 (Claim 1 );
• WO2002/78524 (Example 2); WO2002/99074 (Claim 19; Page 127-129); WO2002/86443 (Claim 27; Pages 222, 393); WO2003/003906 (Claim 10; Page 293); WO2002/64798 (Claim
• NP_003477 solute carrier family 7 cationic amino acid transporter, y+system
• member 5 /pid NP_003477.3 - Homo sapiens
• Napi3b (NAPI-3B, NPTIIb, SLC34A2, solute carrier family 34 (sodium phosphate), member 2, type II sodium-dependent phosphate transporter 3b)
• Sema 5b (FLJ10372, KIAA1445, Mm.42015, SEMA5B, SEMAG, Semaphorin 5b Hlog, sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B)
• WO2003/003984 (Claim 1 ); WO2002/06339 (Claim 1 ; Page 50); WO2001/88133 (Claim 1 ; Page 41 -43, 48-58); WO2003/054152 (Claim 20); WO2003/101400 (Claim 1 1 ); Accession: 30 Q9P283; Genew; HGNC:10737
• PSCA hlg (2700050C12Rik, C530008O16Rik, RIKEN cDNA 2700050C12, RIKEN cDNA 2700050C12 gene)
• WO2004/048938 Example 2
• WO2004/040000 (Claim 151); WO2003/087768 (Claim 1); WO2003/016475 (Claim 1); WO2003/016475 (Claim 1); WO2002/61087 (Fig 1);
• WO2003/016494 (Fig 6); WO2003/025138 (Claim 12; Page 144); WO2001/98351 (Claim 1; Page 124-125); EP0522868 (Claim 8; Fig 2); WO2001/77172 (Claim 1 ; Page 297-299); US2003/109676; US6518404 (Fig 3); US5773223 (Claim 1 a; Col 31 -34); WO2004/001004.
• WO2003/104275 (Claim 1 ); WO2004/046342 (Example 2); WO2003/042661 (Claim 12); WO2003/083074 (Claim 14; Page 61 ); WO2003/018621 (Claim 1 ); WO2003/024392 (Claim 2; Fig 93); WO2001/66689 (Example 6); LocuslD:54894.
• STEAP2 HGNC_8639, IPCA-1, PCANAP1, STAMP1, STEAP2, STMP, prostate cancer associated gene 1, prostate cancer associated protein 1, six transmembrane epithelial antigen of prostate 2, six transmembrane prostate protein
• Genbank record update date Mar 1 1 , 2010 01 :54 AM
• Genbank record update date Mar 1 1 , 2010 01 :54 AM
• WO2003/104270 (Claim 1 1 ); WO2003/104270 (Claim 16); US2004/005598 (Claim 22); WO2003/042661 (Claim 12); US2003/060612 (Claim 12; Fig 10); WO2002/26822 (Claim 23; Fig 2); WO2002/16429 (Claim 12; Fig 10); Gl:22655488.
• TrpM4 (BR22450, FLJ20041, TRPM4, TRPM4B, transient receptor potential cation channel, subfamily M, member 4)
• Genbank record update date Jun 29, 2012 1 1 :27 AM
• Genbank record update date Jun 29, 2012 1 1 :27 AM
• WO2000/40614 (Claim 14; Page 100-103); WO2002/10382 (Claim 1 ; Fig 9A);
• WO2003/042661 (Claim 12); WO2002/30268 (Claim 27; Page 391 ); US2003/219806 (Claim 4); WO2001/62794 (Claim 14; Fig 1A-D); MIM:606936.
• WO2002/16413 (Claim 1 ; Page 94-95, 105); WO2002/22808 (Claim 2; Fig 1 ); US5854399 (Example 2; Col 17-18); US5792616 (Fig 2); M I M: 187395.
• CD21 CR2 (Complement receptor 2) or C3DR (C3d/Epstein Barr virus receptor) or Hs.73792)
• CD79b (CD79B, CD79 , IGb (immunoglobulin-associated beta), B29)
• Genbank record update date Jun 26, 2012 01 :53 PM
• FcRH2 (IFGP4, IRTA4, SPAP1A (SH2 domain containing phosphatase anchor protein 1a), SPAP1B, SPAP1C)
• WO2002/13847 (Page 71 -74); WO2002/14503 (Page 1 14-1 17); WO2001/53463 (Claim 2;
• EP1439393 (Claim 7); WO2004/043361 (Claim 7); WO2004/022709; WO2001/00244 (Example 3; Fig 4); Accession: P04626; EMBL; M1 1767; AAA35808.1. EMBL; M1 1761 ;
• an antibody comprising CDRs having overall at least 80% sequence identity to CDRs having amino acid sequences of SEQ ID NO:3 (CDR-H1 ), SEQ ID NO:4 (CDR-H2), SEQ ID NO:5 (CDR-H3), SEQ ID NO:104 and/or SEQ ID NO:6 (CDR-L1 ), SEQ ID NO:7 (CDR-L2), and SEQ ID NO:8 (CDR-L3), wherein the anti- HER2 antibody or anti-HER2 binding fragment has reduced immunogenicity as compared to an antibody having a VH of SEQ ID NO:1 and a VL of SEQ ID NO:2.
• a purified antibody molecule that binds to HER2 comprising a all six CDR's from an antibody selected from the group consisting of BIIB71 F10 (SEQ ID NOs:1 1 , 13), BIIB69A09 (SEQ ID NOs:15, 17); BIIB67F10 (SEQ ID NOs:19, 21 ); BIIB67F1 1 (SEQ ID NOs:23, 25), BIIB66A12 (SEQ ID NOs:27, 29), BIIB66C01 (SEQ ID N0s:31 , 33), BIIB65C10 (SEQ ID NOs:35, 37), BIIB65H09 (SEQ ID NOs:39, 41 ) and BIIB65B03 (SEQ ID NOs:43, 45), or CDRs which are identical or which have no more than two alterations from said CDRs.
• Herceptin (Genentech) - US6, 054,297; ATCC accession no. CRL-10463 (Genentech)
• an antibody comprising the variable light and variable heavy amino acid sequences in SEQ ID Nos. 3 and 4, respectively,
• an antibody comprising a light chain amino acid sequence selected from SEQ ID No. 15 and 23, and a heavy chain amino acid sequence selected from SEQ ID No. 16 and 24
• an antibody comprising the amino acid sequence in SEQ ID No. 23, or a deamidated and/or oxidized variant thereof.
• an antibody having a light chain variable domain comprising the hypervariable regions of SEQ ID NO: 1 ".
• an antibody having a heavy chain variable domain comprising the hypervariable regions of SEQ ID NO: 2.
• WO2002/86443 (Claim 27; Page 427); WO2002/60317 (Claim 2); Accession: P40199;
• EP1394274 (Example 1 1 ); US2004/005320 (Example 5); WO2003/029262 (Page 74-75); WO2003/002717 (Claim 2; Page 63); WO2002/22153 (Page 45-47); US2002/042366 (Page 20-21 ); WO2001/46261 (Page 57-59); WO2001/46232 (Page 63-65); W098/37193 (Claim 1 ; Page 55-59); Accession: Q9UHF4; Q6UWA9; Q96SH8; EMBL; AF184971 ; AAF01320.1 . (21) Brevican (BCAN, BEHAB)
• Genbank record update date Mar 1 1 , 2010 12:58 AM Polypeptide
• EphB2R (DRT, ERK, Hek5, EPHT3, Tyro5)
• WO2003042661 (Claim 12); WO200053216 (Claim 1 ; Page 41 ); WO2004065576 (Claim 1 );
• WO2004020583 (Claim 9); WO2003004529 (Page 128-132); WO200053216 (Claim 1 ; Page 42); MIM:600997. (23) ASLG659 (B7h)
• Genbank record update date Jan 26, 201 1 07:37 AM
• WO2001/40269 (Example 3; Pages 190-192); WO2000/36107 (Example 2; Page 205-207); WO2004/053079 (Claim 12); WO2003/004989 (Claim 1 ); WO2002/71928 (Page 233-234,
• PSCA Prostate stem cell antigen precursor
• Genbank record update date Feb 1 , 201 1 1 1 :25 AM
• Genbank record update date Feb 1 , 201 1 1 1 :25 AM
• Genbank record update date Mar 1 1 , 2010 02:24 AM Polypeptide
• AP14954 lipoma HMGIC fusion-partnerlike protein /pid AAP 14954.1 - Homo sapiens (human); WO2003/054152 (Claim 20); WO2003/000842 (Claim 1 ); WO2003/023013 (Example 3, Claim 20); US2003/194704 (Claim 45); Gl:30102449; (26) BAFF-R (B cell -activating factor receptor, BLyS receptor 3, BR3)
• BAFF receptor /pid NP_443177.1 - Homo sapiens: Thompson, J.S., et al Science 293 (5537), 2108-21 1 1 (2001 ); WO2004/058309; WO2004/01 161 1 ; WO2003/045422 (Example; Page 32-33); WO2003/014294 (Claim 35; Fig 6B); WO2003/035846 (Claim 70; Page 615- 616); WO2002/94852 (Col 136-137); WO2002/38766 (Claim 3; Page 133); WO2002/24909 (Example 3; Fig 3); MIM:606269; NP_443177.1 ; NM_052945_1 ; AF132600 (27) CD22 (B-cell receptor CD22-B isoform, BL-CAM, Lyb-8, Lyb8, SIGLEC-2, FLJ22814) Nucleotide
• Genbank record update date Sep 1 1 , 2006 1 1 :24 PM
• Genbank record update date Sep 1 1 , 2006 1 1 :24 PM
• Genbank record update date Feb 2, 201 1 10:09 AM
• Genbank record update date Feb 2, 201 1 10:09 AM
• SIGLEC-2 SIGLEC2
• B-cell receptor CD22 B-lymphocyte cell adhesion molecule
• B-lymphocyte cell adhesion molecule BL- CAM
• CD22 antigen T-cell surface antigen Leu-14
• sialic acid binding Ig-like lectin 2 sialic acid-binding Ig-like lectin 2 ANTIBODIES
• G5/44 (Inotuzumab): DiJoseph JF.,et al Cancer Immunol Immunother. 2005 Jan;54(1 ):1 1 - 24.
• CD79a (CD79A, CD79alpha), immunoglobulin-associated alpha, a B cell-specific protein that covalently interacts with Ig beta (CD79B) and forms a complex on the surface with Ig M molecules, transduces a signal involved in B-cell differentiation), pi: 4.84, MW: 25028 TM: 2
• Genbank record update date Jun 26, 2012 01 :48 PM
• Genbank record update date Jun 26, 2012 01 :48 PM
• CXCR5 Bokitt's lymphoma receptor 1, a G protein-coupled receptor that is activated by the CXCL13 chemokine, functions in lymphocyte migration and humoral defense, plays a role in HIV-2 infection and perhaps development of AIDS, lymphoma, myeloma, and leukemia); 372 aa, pi: 8.54 MW: 41959 TM: 7 [P] Gene Chromosome: 11q23.3,
• HLA-DOB Beta subunit of MHC class II molecule (la antigen) that binds peptides and presents them to CD4+ T lymphocytes); 273 aa, pi: 6.56, MW: 30820. TM: 1 [P] Gene Chromosome: 6p21.3)
• P2X5 Purinergic receptor P2X ligand-gated ion channel 5, an ion channel gated by extracellular ATP, may be involved in synaptic transmission and neurogenesis, deficiency may contribute to the pathophysiology of idiopathic detrusor instability
• 422 aa) pi: 7.63
• CD72 B-cell differentiation antigen CD72, Lyb-2
• Genbank record update date Jun 26, 2012 01 :43 PM
• LY64 Lymphocyte antigen 64 (RP105), type I membrane protein of the leucine rich repeat (LRR) family, regulates B-cell activation and apoptosis, loss of function is associated with increased disease activity in patients with systemic lupus erythematosis); 661 aa, pi: 6.20, MW: 74147 TM: 1 [P] Gene Chromosome: 5q12).
• FcRH1 Fc receptor-like protein 1, a putative receptor for the immunoglobulin Fc domain that contains C2 type Ig-like and ITAM domains, may have a role in B-lymphocyte differentiation); 429 aa, pi: 5.28, MW: 46925 TM: 1 [P] Gene Chromosome: 1q21-1q22) Nucleotide
• IRTA2 Immunoglobulin superfamily receptor translocation associated 2, a putative immunoreceptor with possible roles in B cell development and lymphomagenesis
• Genbank record update date Mar 1 1 , 2010 01 :16 AM Polypeptide
• Genbank record update date Mar 1 1 , 2010 01 :16 AM Cross references
• TENB2 (TMEFF2, tomoregulin, TPEF, HPP1, TR, putative transmembrane
• proteoglycan related to the EGF/heregulin family of growth factors and follistatin
• Genbank record update date Mar 1 1 , 2010 01 :05 AM
• PSMA - FOLH1 Falate hydrolase (prostate-specific membrane antigen) 1
• N-acetylated alpha-linked acidic dipeptidase 1 N-acetylated-alpha- linked acidic dipeptidase I; NAALADase I; cell growth-inhibiting gene 27 protein; folylpoly- gamma-glutamate carboxypeptidase; glutamate carboxylase II; glutamate carboxypeptidase 2; glutamate carboxypeptidase II; membrane glutamate carboxypeptidase; prostate specific membrane antigen variant F; pteroylpoly-gamma-glutamate carboxypeptidase ANTIBODIES
• Antibodies produces by Hybridomas having the following ATCC references:ATCC accession No. HB-12101 , ATCC accession No. HB-12109, ATCC accession No. HB-12127 and ATCC accession No. HB-12126.
• Proscan a monoclonal antibody selected from the group consisting of 8H12, 3E1 1 , 17G1 , 29B4, 30C1 and 20F2 (US 7,81 1 ,564; Moffett S., et al Hybridoma (Larc mt). 2007
• Cytogen monoclonal antibodies 7E1 1 -C5 (ATCC accession No. HB 10494) and 9H 10-A4 (ATCC accession No. HB1 1430) - US 5,763,202 GlycoMimetics: NUH2 - ATCC accession No. HB 9762 (US 7,135,301 )
• Medarex Anti-PSMA antibodies that lack fucosyl residues - US 7,875,278
• Mouse anti-PSMA antibodies include the 3F5.4G6, 3D7.1 .1 , 4E10-1 .14, 3E1 1 , 4D8, 3E6, 3C9, 2C7, 1 G3, 3C4, 3C6, 4D4, 1 G9, 5C8B9, 3G6, 4C8B9, and monoclonal antibodies.
• Hybridomas secreting 3F5.4G6, 3D7.1 .1 , 4E10-1 .14, 3E1 1 , 4D8, 3E6, 3C9, 2C7, 1 G3, 3C4, 3C6, 4D4, 1 G9, 5C8B9, 3G6 or 4C8B9 have been publicly deposited and are described in U.S. Pat. No. 6,159,508. Relevant hybridomas have been publicly deposited and are described in U.S. Pat. No. 6,107,090.
• humanized anti-PSMA antibodies, including a humanized version of J591 are described in further detail in PCT Publication WO
• mouse anti-human PSMA antibodies have been described in the art, such as mAb 107-1A4 (Wang, S. et al. (2001 ) Int. J. Cancer 92:871 -876) and mAb 2C9 (Kato, K. et al. (2003) Int. J. Urol. 10:439-444).
• human anti-PSMA monoclonal antibodies include the 4A3, 7F12, 8C12, 8A1 1 , 16F9, 2A10, 2C6, 2F5 and 1 C3 antibodies, isolated and structurally characterized as originally described in PCT Publications WO 01/09192 and WO 03/064606 and in U.S. Provisional Application Ser. No. 60/654,125, entitled “Human Monoclonal Antibodies to Prostate Specific Membrane Antigen (PSMA)", filed on Feb. 18, 2005.
• the V.sub.H amino acid sequences of 4A3, 7F12, 8C12, 8A1 1 , 16F9, 2A10, 2C6, 2F5 and 1 C3 are shown in SEQ ID NOs: 1 -9, respectively.
• the V.sub.L amino acid sequences of 4A3, 7F12, 8C12, 8A1 1 , 16F9, 2A10, 2C6, 2F5 and 1 C3 are shown in SEQ ID NOs: 10-18, respectively.
• human anti-PSMA antibodies include the antibodies disclosed in PCT Publication WO 03/034903 and US Application No. 2004/0033229.
• NW Biotherapeutics A hybridoma cell line selected from the group consisting of 3F5.4G6 having ATCC accession number HB12060, 3D7-1 .1, having ATCC accession number HB12309, 4E10-1.14 having ATCC accession number HB12310, 3E1 1 (ATCC HB12488), 4D8 (ATCC HB12487), 3E6 (ATCC HB12486), 3C9 (ATCC HB12484), 2C7 (ATCC
• HB12490 1 G3 (ATCC HB12489), 3C4 (ATCC HB12494), 3C6 (ATCC HB12491 ), 4D4 (ATCC HB12493), 1 G9 (ATCC HB12495), 5C8B9 (ATCC HB12492) and 3G6 (ATCC HB12485) - see US 6,150,508 PSMA Development Company / Progenies / Cytogen - Seattle Genetics: mAb 3.9, produced by the hybridoma deposited under ATCC Accession No. PTA-3258 or mAb 10.3, produced by the hybridoma deposited under ATCC Accession No. PTA-3347 - US 7,850,971
• PSMA Development Company- Compositions of PSMA antibodies (US 20080286284, Table 1 )
• antigen identified by monoclonal antibody L230 integrin alpha-V; integrin alphaVbeta3; integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51 ); vitronectin receptor subunit alpha
• Biogen US 7,943,742 - Hybridoma clones 6.3G9 and 6.8G6 were deposited with the ATCC, accession numbers ATCC PTA-3649 and -3645, respectively.
• the antibody comprises the same heavy and light chain polypeptide sequences as an antibody produced by hybridoma 6.1A8, 6.3G9, 6.8G6, 6.2B1 , 6.2B10, 6.2A1 , 6.2E5, 7.1 G10, 7.7G5, or 7.1 C5.
• CEACAM5 Carcinoembryonic antigen-related cell adhesion molecule 5
• CDRs complementarity determining regions
• an antibody comprising the heavy chain variable region sequence from the amino acid sequence of SEQ ID NO: 1 , and the light chain variable region sequence from the amino acid sequence of SEQ ID NO:2.
• an antibody comprising the heavy chain variable region sequence from the amino acid sequence of SEQ ID NO:5, and the light chain variable region sequence from the amino acid sequence of SEQ ID NO:6.
• an antibody having CDRs of the light chain variable region comprise: CDR1 comprises KASQDVGTSVA (SEQ ID NO: 20); CDR2 comprises
• WTSTRHT (SEQ ID NO: 21 ); and CDR3 comprises QQYSLYRS (SEQ ID NO: 22);
• CDR1 comprises TYWMS (SEQ ID NO: 23);
• CDR2 comprises EIHPDSSTINYAPSLKD (SEQ ID NO: 24); and
• CDR3 comprises LYFGFPWFAY (SEQ ID NO: 25).
• Genbank record update date Mar 6, 2012 1 1 :12 AM
• Genbank record update date Mar 6, 2012 1 1 :12 AM
• HGF receptor HGF/SF receptor
• SF receptor hepatocyte growth factor receptor
• met proto-oncogene tyrosine kinase proto-oncogene c-Met
• scatter factor receptor tyrosine-protein kinase Met
• ATCC American Type Culture Collection
• Novartis: US20090175860 for example, an antibody comprising the sequences of CDR1 , CDR2 and CDR3 of heavy chain 4687, wherein the sequences of CDR1 , CDR2, and CDR3 of heavy chain 4687 are residues 26-35, 50-65, and 98-102, respectively, of SEQ ID NO: 58; and the sequences of CDR1 , CDR2, and CDR3 of light chain 5097, wherein the sequences of CDR1 , CDR2, and
• CDR3 oflight chain 5097 are residues 24-39,55-61 , and 94-100 of SEQ ID NO: 37.
• DF3 antigen H23 antigen; breast carcinoma-associated antigen DF3; carcinoma-associated mucin; episialin; krebs von den Lept-6; mucin 1 , transmembrane; mucin-1 ; peanut-reactive urinary mucin; polymorphic epithelial mucin; tumor associated epithelial mucin; tumor-associated epithelial membrane antigen; tumor-associated mucin
• AltaRex- Quest Pharma Tech US 6,716,966 - for example an Alt-1 antibody produced by the hybridoma ATCC No PTA-975.
• GT-MAB GT-MAB 2.5-GEX (Website:
• antibody MJ-170 hybridoma cell line MJ-170 ATCC
• Genbank record update date Feb 2, 201 1 10:15 AM
• Genbank record update date Feb 2, 201 1 10:15 AM
• Affibody Anti-CAIX Affibody molecules
• BCCM Belgian Coordinated Collection of Microorganisms
• LMBP Laboratorium voor Mole Diagram Bioloqie- Plasmidencollectie
• Wilex US7,691 ,375 - for example the antibody produced by the hybridoma cell line DSM ASC 2526.
• Wilex US201 10123537; Rencarex: Kennett RH., et al Curr Opin Mol Then 2003
• EGFRvlll Epidermal growth factor receptor (EGFR), transcript variant 3,
• an antibody comprising a heavy chain amino acid sequence comprising:
• CDR1 consisting of a sequence selected from the group consisting of the amino acid sequences for the CDR1 region of antibodies 13.1.2 (SEQ ID NO: 138), 131 (SEQ ID NO: 2), 170 (SEQ ID NO: 4), 150 (SEQ ID NO: 5), 095 (SEQ ID NO: 7), 250 (SEQ ID NO:
• CDR2 consisting of a sequence selected from the group consisting of the amino acid sequences for the CDR2 region of antibodies 13.1.2 (SEQ ID NO: 138), 131 (SEQ ID NO: 2), 170 (SEQ ID NO: 4), 150 (SEQ ID NO: 5), 095 (SEQ ID NO: 7), 250 (SEQ ID NO:
• CDR3 consisting of a sequence selected from the group consisting of the amino acid sequences for the CDR3 region of antibodies 13.1.2 (SEQ ID NO: 138), 131 (SEQ ID NO: 2), 170 (SEQ ID NO: 4), 150 (SEQ ID NO: 5), 095 (SEQ ID NO: 7), 250 (SEQ ID NO: 9), 139 (SEQ ID NO: 10), 21 1 (SEQ ID NO: 12), 124 (SEQ ID NO: 13), 318 (SEQ ID NO: 15), 342 (SEQ ID NO: 16), and 333 (SEQ ID NO: 17).
• an antibody having at least one of the heavy or light chain polypeptides comprises an amino acid sequence that is at least 90% identical to the amino acid sequence selected from the group consisting of: SEQ ID NO: 2, SEQ ID NO: 19, SEQ ID NO: 142, SEQ ID NO: 144, and any combination thereof.
• SEQ ID NO: 2 amino acid sequence selected from the group consisting of: SEQ ID NO: 2, SEQ ID NO: 19, SEQ ID NO: 142, SEQ ID NO: 144, and any combination thereof.
• antibody having heavy chain polypeptide and a light chain polypeptide, wherein at least one of the heavy or light chain polypeptides comprises an amino acid sequence that is at least 90% identical to the amino acid sequence selected from the group consisting of: SEQ ID NO: 2, SEQ ID NO: 19, SEQ ID NO: 142, SEQ ID NO: 144, and any combination thereof.
• SEQ ID NO: 2 amino acid sequence selected from the group consisting of: SEQ ID NO: 2, SEQ ID NO: 19, SEQ ID NO: 142, SEQ ID NO: 144, and any combination thereof.
• an antibody heavy chain amino acid sequence selected from the group consisting of the heavy chain amino acid sequence of antibody 13.1.2 (SEQ ID NO: 138), 131 (SEQ ID NO: 2), 170 (SEQ ID NO: 4), 150 (SEQ ID NO: 5), 095 (SEQ ID NO: 7), 250 (SEQ ID NO: 9), 139 (SEQ ID NO: 10), 21 1 (SEQ ID NO: 12), 124 (SEQ ID NO: 13), 318 (SEQ ID NO: 15), 342 (SEQ ID NO: 16), and 333 (SEQ ID NO: 17).
• a variant antibody having the sequence of SEQ ID NO.18 with the substitutions S98P-T99Y in the CDR3 VH, and F92W in CDR3 VL.
• SEQ ID NO:9 for antibody heavy chain variable region and SEQ ID NO: 3 for light chain variable region amino acid sequences
• SEQ ID NOs: 3 & 9 for light chain and heavy chain respectively
• CD33 (CD33 molecule)
• CD33 antigen gp67
• gp67 myeloid cell surface antigen CD33
• sialic acid binding Ig-like lectin 3 sialic acid-binding Ig-like lectin
• an antibody or fragment thereof comprising a heavy chain variable region which comprises three CDRs having the amino acid sequences of SEQ ID NO: 1
• B-lymphocyte antigen CD19 B-lymphocyte surface antigen B4; T-cell surface antigen Leu-12; differentiation antigen CD19
• an antibody comprising the sequence of hA19Vk (SEQ ID NO:7) and the sequence of hA19VH (SEQ ID NO: 10) US7, 902,338 (Immunomedics)
• an antibody or antigen-binding fragment thereof that comprises the light chain complementarity determining region CDR sequences CDR1 of SEQ ID NO: 16 (KASQSVDYDGDSYLN); CDR2 of SEQ ID NO: 17 (DASNLVS); and CDR3 of SEQ ID NO: 18 (QQSTEDPWT) and the heavy chain CDR sequences CDR1 of SEQ ID NO: 19 (SYWMN); CDR2 of SEQ ID NO: 20 (QIWPGDGDTNYNGKFKG) and CDR3 of SEQ ID NO: 21 (R ETTTVG RYYYAM D Y) and also comprises human antibody framework (FR) and constant region sequences with one or more framework region amino acid residues substituted from the corresponding framework region sequences of the parent murine antibody, and wherein said substituted FR residues comprise the substitution of serine for phenylalanine at Kabat residue 91 of the heavy chain variable region.
• Medarex MDX-1342 - Cardarelli PM., et al Cancer
• An antibody or antigen-binding fragment comprising a heavy chain variable domain comprising the amino acid sequence of SEQ ID NO:9 and a light chain variable domain comprising the amino acid sequence of SEQ ID NO: 24.
• IL2RA Interleukin 2 receptor, alpha
• NCBI Reference Sequence NM_000417.2
• an antibody having an antigen binding site comprises at least one domain which comprises CDR1 having the amino acid sequence in SEQ. ID. NO: 7, CDR2 having the amino acid sequence in SEQ. ID. NO: 8, and CDR3 chaving the amino acid sequence in SEQ. ID. NO: 9; or said CDR1 , CDR2 and CDR3 taken in sequence as a whole comprise an amino acid sequence which is at least 90% identical to SEQ. ID. NOs: 7, 8 and 9 taken in sequence as a whole. Daclizumab - Rech AJ., et al Ann N Y Acad Sci. 2009 Sep;1 174:99-106 (Roche)
• AXL AXL receptor tyrosine kinase
• CD30 - TNFRSF8 Tumor necrosis factor receptor superfamily, member 8
• CD30L receptor CD30L receptor
• Ki-1 antigen CD30
• cytokine receptor CD30 cytokine receptor CD30
• lymphocyte activation antigen CD30
• BCMA B-cell maturation antigen
• TNFRSF17 Tumor necrosis factor receptor superfamily, member 17
• Genbank record update date Feb 02, 201 1 10:40 AM
• B cell maturation antigen B-cell maturation factor
• B-cell maturation protein B-cell maturation protein
• CD174 (Lewis Y) - FUT3 (fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransf erase, Lewis blood group)
• CLEC14A C-type lectin domain family 14, member A; Genbank accession no. NM175060
• Genbank record update date Apr 01 , 2012 03:34 PM
• Genbank record update date Apr 01 , 2012 03:34 PM
• C-type lectin domain family 14 member A CIECT and EGF-like domain containing protein
• epidermal growth factor receptor 5 CIECT and EGF-like domain containing protein
• GRP78 - HSPA5 heat shock lOkDa protein 5 (glucose-regulated protein, 78kDa)

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