NO322136B1 - Oligonukleotid, metode for amplifisering av nukleinsyre-malsekvens ved anvendelse av oligonukleotid, samt sett for nukleinsyre-amplifikasjonsreaksjon - Google Patents
Oligonukleotid, metode for amplifisering av nukleinsyre-malsekvens ved anvendelse av oligonukleotid, samt sett for nukleinsyre-amplifikasjonsreaksjon Download PDFInfo
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- NO322136B1 NO322136B1 NO19981239A NO981239A NO322136B1 NO 322136 B1 NO322136 B1 NO 322136B1 NO 19981239 A NO19981239 A NO 19981239A NO 981239 A NO981239 A NO 981239A NO 322136 B1 NO322136 B1 NO 322136B1
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- primers
- primer
- group
- modified
- amplification
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Classifications
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H21/00—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/686—Polymerase chain reaction [PCR]
Landscapes
- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Biochemistry (AREA)
- Molecular Biology (AREA)
- Engineering & Computer Science (AREA)
- Zoology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- General Health & Medical Sciences (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Biotechnology (AREA)
- Wood Science & Technology (AREA)
- Genetics & Genomics (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- Biophysics (AREA)
- Analytical Chemistry (AREA)
- Physics & Mathematics (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Paints Or Removers (AREA)
- Dental Preparations (AREA)
- Saccharide Compounds (AREA)
Applications Claiming Priority (1)
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| US4112797P | 1997-03-20 | 1997-03-20 |
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| NO981239D0 NO981239D0 (no) | 1998-03-19 |
| NO981239L NO981239L (no) | 1998-09-21 |
| NO322136B1 true NO322136B1 (no) | 2006-08-21 |
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| Application Number | Title | Priority Date | Filing Date |
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| NO19981239A NO322136B1 (no) | 1997-03-20 | 1998-03-19 | Oligonukleotid, metode for amplifisering av nukleinsyre-malsekvens ved anvendelse av oligonukleotid, samt sett for nukleinsyre-amplifikasjonsreaksjon |
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| EP (1) | EP0866071B1 (cs) |
| JP (1) | JP2966389B2 (cs) |
| KR (1) | KR100292997B1 (cs) |
| CN (1) | CN1065873C (cs) |
| AT (1) | ATE280177T1 (cs) |
| AU (1) | AU712448B2 (cs) |
| BR (1) | BR9801878B1 (cs) |
| CA (1) | CA2229766C (cs) |
| CZ (1) | CZ291525B6 (cs) |
| DE (1) | DE69827060T2 (cs) |
| DK (1) | DK0866071T3 (cs) |
| ES (1) | ES2230631T3 (cs) |
| HK (1) | HK1012192A1 (cs) |
| HU (1) | HU223669B1 (cs) |
| IL (1) | IL123694A (cs) |
| NO (1) | NO322136B1 (cs) |
| PL (1) | PL190142B1 (cs) |
| RU (1) | RU2159248C2 (cs) |
| TW (1) | TW567188B (cs) |
| UA (1) | UA49843C2 (cs) |
Cited By (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US12098368B2 (en) | 2018-10-29 | 2024-09-24 | Cepheid | Exponential base-3 and greater nucleic acid amplification with reduced amplification time |
Families Citing this family (188)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US6200757B1 (en) * | 1999-01-19 | 2001-03-13 | Dade Behring Inc. | Method for controlling the extension of an oligonucleotide |
| US6509157B1 (en) * | 1999-11-05 | 2003-01-21 | Roche Molecular Systems, Inc | 3 blocked nucleic acid amplification primers |
| WO2001037291A1 (en) | 1999-11-17 | 2001-05-25 | Roche Diagnostics Gmbh | Magnetic glass particles, method for their preparation and uses thereof |
| CA2389533C (en) | 1999-12-15 | 2010-10-05 | Gen-Probe Incorporated | Methods and compositions for detection of mycobacterium avium complex species |
| US6664081B2 (en) * | 1999-12-17 | 2003-12-16 | Gen-Probe Incorporated | Nucleic acid amplification and detection of mycobacterium species |
| CA2389523C (en) * | 1999-12-17 | 2012-03-06 | Gen-Probe Incorporated | Nucleic acid amplification and detection of mycobacterium xenopi 16s ribosomal rna (rrna) or dna encoding 16s rrna in a biological sample |
| US7205129B1 (en) | 2000-02-28 | 2007-04-17 | Qiagen Gmbh | Method for reducing artifacts in nucleic acid amplification |
| WO2001075139A1 (en) * | 2000-04-03 | 2001-10-11 | Biolink Partners, Inc. | Reversible chemical modification of nucleic acids and improved method for nucleic acid hybridization |
| US6548251B1 (en) * | 2000-09-05 | 2003-04-15 | Fidelity Systems, Inc. | Inhibition of molecular and biological processes using modified oligonucleotides |
| WO2002020845A2 (en) * | 2000-09-08 | 2002-03-14 | Thomas Jefferson University | Ultra yield amplification reaction |
| US6664079B2 (en) | 2000-10-06 | 2003-12-16 | The Trustees Of Columbia University In The City Of New York | Massive parallel method for decoding DNA and RNA |
| US9708358B2 (en) | 2000-10-06 | 2017-07-18 | The Trustees Of Columbia University In The City Of New York | Massive parallel method for decoding DNA and RNA |
| EP1201768B1 (en) * | 2000-10-25 | 2005-12-14 | Roche Diagnostics GmbH | Amplification using modified primers |
| US6986992B2 (en) * | 2001-03-30 | 2006-01-17 | Amersham Biosciences Ab | P450 single nucleotide polymorphism biochip analysis |
| US7235358B2 (en) | 2001-06-08 | 2007-06-26 | Expression Diagnostics, Inc. | Methods and compositions for diagnosing and monitoring transplant rejection |
| US7026121B1 (en) | 2001-06-08 | 2006-04-11 | Expression Diagnostics, Inc. | Methods and compositions for diagnosing and monitoring transplant rejection |
| US6905827B2 (en) * | 2001-06-08 | 2005-06-14 | Expression Diagnostics, Inc. | Methods and compositions for diagnosing or monitoring auto immune and chronic inflammatory diseases |
| WO2002101041A1 (fr) * | 2001-06-12 | 2002-12-19 | Takara Bio Inc. | Procede d'amplification de l'acide nucleique et procede de detection du polymorphisme des nucleotides a l'aide d'un analogue de nucleotide |
| US20030096277A1 (en) * | 2001-08-30 | 2003-05-22 | Xiangning Chen | Allele specific PCR for genotyping |
| US6617137B2 (en) | 2001-10-15 | 2003-09-09 | Molecular Staging Inc. | Method of amplifying whole genomes without subjecting the genome to denaturing conditions |
| US7297485B2 (en) * | 2001-10-15 | 2007-11-20 | Qiagen Gmbh | Method for nucleic acid amplification that results in low amplification bias |
| US7211382B2 (en) * | 2002-04-09 | 2007-05-01 | Orchid Cellmark Inc. | Primer extension using modified nucleotides |
| US20070059690A1 (en) * | 2002-05-31 | 2007-03-15 | Amirul Islam | "Met/fret based method of target nucleic acid detection whereby the donor/acceptor moieties are on complementary strands" |
| US7955795B2 (en) | 2003-06-06 | 2011-06-07 | Qiagen Gmbh | Method of whole genome amplification with reduced artifact production |
| US9487823B2 (en) | 2002-12-20 | 2016-11-08 | Qiagen Gmbh | Nucleic acid amplification |
| ES2524048T3 (es) | 2003-03-31 | 2014-12-03 | F. Hoffmann-La Roche Ag | Composiciones y métodos para la detección de ciertos flavivirus, incluidos los miembros del serogrupo del virus de la encefalitis japonesa |
| WO2004094986A2 (en) | 2003-04-16 | 2004-11-04 | Handylab, Inc. | System and method for electrochemical detection of biological compounds |
| US7892745B2 (en) | 2003-04-24 | 2011-02-22 | Xdx, Inc. | Methods and compositions for diagnosing and monitoring transplant rejection |
| US7517978B1 (en) | 2004-04-14 | 2009-04-14 | Applied Biosystems, Llc | Modified oligonucleotides and applications thereof |
| US7408051B2 (en) | 2004-04-14 | 2008-08-05 | Applera Corporation | Modified oligonucleotides and applications thereof |
| US7939251B2 (en) | 2004-05-06 | 2011-05-10 | Roche Molecular Systems, Inc. | SENP1 as a marker for cancer |
| US20090232771A1 (en) | 2004-07-13 | 2009-09-17 | Takeda Pharmaceutical Company Limited | Method of controlling cell functions |
| WO2006029184A2 (en) * | 2004-09-08 | 2006-03-16 | Expression Diagnostics, Inc. | Genes useful for diagnosing and monitoring inflammation related disorders |
| EP1809765A2 (en) * | 2004-11-04 | 2007-07-25 | Roche Diagnostics GmbH | Classification of acute myeloid leukemia |
| US7842794B2 (en) | 2004-12-17 | 2010-11-30 | Roche Molecular Systems, Inc. | Reagents and methods for detecting Neisseria gonorrhoeae |
| CN101171343A (zh) * | 2005-04-14 | 2008-04-30 | 阿普里拉股份有限公司 | 含有假异胞嘧啶核碱基衍生物的3’修饰寡核苷酸及其作为引物或探针的应用 |
| US7465561B2 (en) | 2005-06-30 | 2008-12-16 | Roche Molecular Systems, Inc. | Probes and methods for hepatitis C virus typing using single probe analysis |
| US11111543B2 (en) | 2005-07-29 | 2021-09-07 | Natera, Inc. | System and method for cleaning noisy genetic data and determining chromosome copy number |
| US11111544B2 (en) | 2005-07-29 | 2021-09-07 | Natera, Inc. | System and method for cleaning noisy genetic data and determining chromosome copy number |
| US10083273B2 (en) | 2005-07-29 | 2018-09-25 | Natera, Inc. | System and method for cleaning noisy genetic data and determining chromosome copy number |
| US10081839B2 (en) | 2005-07-29 | 2018-09-25 | Natera, Inc | System and method for cleaning noisy genetic data and determining chromosome copy number |
| US9424392B2 (en) | 2005-11-26 | 2016-08-23 | Natera, Inc. | System and method for cleaning noisy genetic data from target individuals using genetic data from genetically related individuals |
| JP5558811B2 (ja) * | 2006-06-01 | 2014-07-23 | トリリンク バイオテクノロジーズ | 核酸増幅のための化学的に修飾されたオリゴヌクレオチドプライマー |
| CA2655018A1 (en) * | 2006-06-16 | 2007-12-21 | Pacific Biosciences Of California, Inc. | Controlled initiation of primer extension |
| US9045522B2 (en) | 2006-07-31 | 2015-06-02 | Wanli Bi | Nucleic acid amplification using a reversibly modified oligonucleotide |
| ES2376202T3 (es) * | 2006-07-31 | 2012-03-09 | Wanli Bi | Amplificación de �?cidos nucleicos usando un oligonucleótido modificado reversiblemente. |
| US7993832B2 (en) | 2006-08-14 | 2011-08-09 | Xdx, Inc. | Methods and compositions for diagnosing and monitoring the status of transplant rejection and immune disorders |
| WO2008140484A2 (en) | 2006-11-09 | 2008-11-20 | Xdx, Inc. | Methods for diagnosing and monitoring the status of systemic lupus erythematosus |
| WO2008069973A2 (en) | 2006-12-01 | 2008-06-12 | The Trustees Of Columbia University In The City Of New York | Four-color dna sequencing by synthesis using cleavable fluorescent nucleotide reversible terminators |
| US7897737B2 (en) | 2006-12-05 | 2011-03-01 | Lasergen, Inc. | 3′-OH unblocked, nucleotides and nucleosides, base modified with photocleavable, terminating groups and methods for their use in DNA sequencing |
| US7893227B2 (en) | 2006-12-05 | 2011-02-22 | Lasergen, Inc. | 3′-OH unblocked nucleotides and nucleosides base modified with non-cleavable, terminating groups and methods for their use in DNA sequencing |
| US9938641B2 (en) | 2006-12-18 | 2018-04-10 | Fluidigm Corporation | Selection of aptamers based on geometry |
| WO2008119081A1 (en) | 2007-03-28 | 2008-10-02 | Signal Diagnostics | System and method for high resolution analysis of nucleic acids to detect sequence variations |
| CN103320506B (zh) | 2007-07-03 | 2015-10-28 | 吉纳珀莱有限公司 | 用于改进的核酸扩增反应的嵌合引物 |
| EP2185726B1 (en) | 2007-08-06 | 2014-01-08 | Orion Genomics, LLC | Novel single nucleotide polymorphisms and combinations of novel and known polymorphisms for determining the allele-specific expression of the igf2 gene |
| JP2009077712A (ja) | 2007-09-11 | 2009-04-16 | F Hoffmann La Roche Ag | Ｂ−Ｒａｆキナーゼ阻害剤に対する感受性についての診断試験 |
| JP5535921B2 (ja) * | 2007-10-04 | 2014-07-02 | コモンウェルス サイエンティフィック アンドインダストリアル リサーチ オーガナイゼーション | 核酸増幅 |
| US20100086914A1 (en) * | 2008-10-03 | 2010-04-08 | Roche Molecular Systems, Inc. | High resolution, high throughput hla genotyping by clonal sequencing |
| EP4310194A3 (en) | 2007-10-19 | 2024-10-16 | The Trustees of Columbia University in the City of New York | Design and synthesis of cleavable fluorescent nucleotides as reversible terminators for dna sequencing by synthesis |
| DK2725107T3 (da) | 2007-10-19 | 2019-01-02 | Univ Columbia | DNA-sekventering med ikke-fluorescerende nukleotidreversible terminatorer og ddNTP'er modificeret med spaltbart mærke og nukleinsyre omfattende inosin med reversible terminatorer |
| DE102008005667A1 (de) | 2008-01-19 | 2009-07-30 | Olfert Landt | Basenmodifizierte Primeroligomere für die Multiplex-RT-PCR |
| US8911948B2 (en) * | 2008-04-30 | 2014-12-16 | Integrated Dna Technologies, Inc. | RNase H-based assays utilizing modified RNA monomers |
| CA2722541C (en) | 2008-04-30 | 2017-01-10 | Integrated Dna Technologies, Inc. | Rnase h-based assays utilizing modified rna monomers |
| KR101677772B1 (ko) | 2008-06-11 | 2016-11-18 | 레이저젠, 인코퍼레이티드 | 뉴클레오타이드 및 뉴클레오사이드 그리고 시퀀싱에서의 이들의 이용 방법 |
| AU2009279734A1 (en) | 2008-08-04 | 2010-02-11 | Natera, Inc. | Methods for allele calling and ploidy calling |
| JP5624044B2 (ja) * | 2008-10-20 | 2014-11-12 | エフ．ホフマン−ラ ロシュアーゲーＦ．Ｈｏｆｆｍａｎｎ−Ｌａ Ｒｏｃｈｅ Ａｋｔｉｅｎｇｅｓｅｌｌｓｃｈａｆｔ | 改善されたアレル−特異的増幅 |
| US10669574B2 (en) | 2008-11-18 | 2020-06-02 | XCR Diagnostics, Inc. | DNA amplification technology |
| US8206929B2 (en) * | 2009-01-07 | 2012-06-26 | Roche Molecular Systems, Inc. | Nucleic acid amplification with allele-specific suppression of sequence variants |
| JP5748672B2 (ja) | 2009-02-11 | 2015-07-15 | オリオン ゲノミクス エルエルシー | Ｉｇｆ２の対立遺伝子特異的な発現を判定するための多型の組み合わせ |
| US8409802B2 (en) | 2009-08-14 | 2013-04-02 | Roche Molecular Systems, Inc. | Format of probes to detect nucleic acid differences |
| WO2011041485A1 (en) | 2009-09-30 | 2011-04-07 | Gene Security Network, Inc. | Methods for non-invasive prenatal ploidy calling |
| US8614071B2 (en) | 2009-12-11 | 2013-12-24 | Roche Molecular Systems, Inc. | Preferential amplification of mRNA over DNA using chemically modified primers |
| US9238832B2 (en) | 2009-12-11 | 2016-01-19 | Roche Molecular Systems, Inc. | Allele-specific amplification of nucleic acids |
| WO2011128096A1 (en) | 2010-04-16 | 2011-10-20 | Roche Diagnostics Gmbh | Polymorphism markers for predicting response to interleukin-6 receptor-inhibiting monoclonal antibody drug treatment |
| US9677118B2 (en) | 2014-04-21 | 2017-06-13 | Natera, Inc. | Methods for simultaneous amplification of target loci |
| US11332793B2 (en) | 2010-05-18 | 2022-05-17 | Natera, Inc. | Methods for simultaneous amplification of target loci |
| US11339429B2 (en) | 2010-05-18 | 2022-05-24 | Natera, Inc. | Methods for non-invasive prenatal ploidy calling |
| EP2854058A3 (en) | 2010-05-18 | 2015-10-28 | Natera, Inc. | Methods for non-invasive pre-natal ploidy calling |
| US11939634B2 (en) | 2010-05-18 | 2024-03-26 | Natera, Inc. | Methods for simultaneous amplification of target loci |
| US20190010543A1 (en) | 2010-05-18 | 2019-01-10 | Natera, Inc. | Methods for simultaneous amplification of target loci |
| US11408031B2 (en) | 2010-05-18 | 2022-08-09 | Natera, Inc. | Methods for non-invasive prenatal paternity testing |
| US10316362B2 (en) | 2010-05-18 | 2019-06-11 | Natera, Inc. | Methods for simultaneous amplification of target loci |
| US11322224B2 (en) | 2010-05-18 | 2022-05-03 | Natera, Inc. | Methods for non-invasive prenatal ploidy calling |
| US11332785B2 (en) | 2010-05-18 | 2022-05-17 | Natera, Inc. | Methods for non-invasive prenatal ploidy calling |
| US11326208B2 (en) | 2010-05-18 | 2022-05-10 | Natera, Inc. | Methods for nested PCR amplification of cell-free DNA |
| ES2647612T3 (es) | 2010-06-04 | 2017-12-22 | Chronix Biomedical | Biomarcadores de ácidos nucleicos en circulación asociados al cáncer de próstata |
| WO2012038049A2 (en) | 2010-09-22 | 2012-03-29 | Roche Diagnostics Gmbh | Amplification of distant nucleic acid targets using engineered primers |
| WO2012075005A1 (en) | 2010-12-01 | 2012-06-07 | Berry & Associates, Inc. | Compounds for the synthetic introduction of n-alkyl nucleosides into dna oligonucleotides |
| CA2821906C (en) | 2010-12-22 | 2020-08-25 | Natera, Inc. | Methods for non-invasive prenatal paternity testing |
| US20120164641A1 (en) * | 2010-12-22 | 2012-06-28 | Roche Molecular Systems, Inc. | Methods and Compositions for Detecting Mutation in the Human Epidermal Growth Factor Receptor Gene |
| JP6153874B2 (ja) | 2011-02-09 | 2017-06-28 | ナテラ， インコーポレイテッド | 非侵襲的出生前倍数性呼び出しのための方法 |
| WO2012135053A2 (en) | 2011-03-25 | 2012-10-04 | Integrated Dna Technologies, Inc. | Rnase h-based assays utilizing modified rna monomers |
| WO2012162429A2 (en) | 2011-05-23 | 2012-11-29 | The Trustees Of Columbia University In The City Of New York | Dna sequencing by synthesis using raman and infrared spectroscopy detection |
| US9034581B2 (en) | 2011-05-26 | 2015-05-19 | Roche Molecular Systems, Inc. | Compositions and methods for detection of Staphylococcus aureus |
| CA2852098C (en) | 2011-10-21 | 2023-05-02 | Chronix Biomedical | Colorectal cancer associated circulating nucleic acid biomarkers |
| ES2413566B1 (es) | 2011-12-14 | 2014-05-20 | Fundación Pública Andaluza Progreso Y Salud | Método de obtención de datos útiles para el diagnóstico y pronóstico de la hipoacusia neurosensorial. |
| US9115394B2 (en) | 2011-12-22 | 2015-08-25 | Roche Molecular Systems, Inc. | Methods and reagents for reducing non-specific amplification |
| KR101545848B1 (ko) * | 2012-04-09 | 2015-08-21 | (주)바이오니아 | 핵산중합효소로 핵산을 검출하는데 사용되는 고민감도 핵산준비방법 |
| JP6450308B2 (ja) | 2012-06-14 | 2019-01-09 | ライフ テクノロジーズ コーポレーション | ポリメラーゼ連鎖反応（ｐｃｒ）のための新規の組成物、方法、およびキット |
| US9982313B2 (en) | 2012-08-17 | 2018-05-29 | Roche Molecular Systems, Inc. | Compositions and methods for detection of herpes simplex virus 1 and 2 |
| US20140100126A1 (en) | 2012-08-17 | 2014-04-10 | Natera, Inc. | Method for Non-Invasive Prenatal Testing Using Parental Mosaicism Data |
| EP2722399A1 (en) | 2012-10-18 | 2014-04-23 | Roche Diagniostics GmbH | Method for preventing high molecular weight products during amplification |
| US9382581B2 (en) | 2012-12-13 | 2016-07-05 | Roche Molecular Systems, Inc. | Primers with modified phosphate and base in allele-specific PCR |
| PL2931922T3 (pl) | 2012-12-14 | 2019-04-30 | Chronix Biomedical | Personalizowane biomarkery nowotworu |
| WO2014144883A1 (en) | 2013-03-15 | 2014-09-18 | The Trustees Of Columbia University In The City Of New York | Raman cluster tagged molecules for biological imaging |
| US9828629B2 (en) | 2013-03-15 | 2017-11-28 | Roche Molecular Systems, Inc. | Nucleic acid target identification by structure based probe cleavage |
| HUE041935T2 (hu) | 2013-05-29 | 2019-06-28 | Chronix Biomedical | Donor sejtmentes DNS-ének detektálása és kvantifikálása a szervtranszplantátumot kapott recipiensek véráramában |
| CR20160132A (es) | 2013-08-12 | 2016-08-25 | Genentech Inc | Composiciones y método para tratar condiciones asociadas con el complemento |
| WO2015048535A1 (en) | 2013-09-27 | 2015-04-02 | Natera, Inc. | Prenatal diagnostic resting standards |
| US10262755B2 (en) | 2014-04-21 | 2019-04-16 | Natera, Inc. | Detecting cancer mutations and aneuploidy in chromosomal segments |
| US10577655B2 (en) | 2013-09-27 | 2020-03-03 | Natera, Inc. | Cell free DNA diagnostic testing standards |
| WO2015054516A2 (en) | 2013-10-09 | 2015-04-16 | Fluoresentric, Inc. | Multiplex probes |
| EP3055422B1 (en) | 2013-10-09 | 2018-11-14 | Roche Diagnostics GmbH | Methods and compositions for detecting a mutation in the human ezh2 gene |
| US10351918B2 (en) | 2013-10-30 | 2019-07-16 | Green Life Biotech, Llc | Pathogenesis quantification systems and treatment methods for citrus greening blight |
| US10072288B2 (en) | 2013-11-11 | 2018-09-11 | Roche Molecular Systems, Inc. | Detecting single nucleotide polymorphism using overlapped primer and melting probe |
| US9637791B2 (en) | 2013-12-20 | 2017-05-02 | Roche Molecular Systems, Inc. | Multiplexed nucleic acid target identification by strucutre based probe cleavage |
| ES2873248T3 (es) | 2014-02-08 | 2021-11-03 | Hoffmann La Roche | Métodos para tratar la enfermedad de Alzheimer |
| AU2015249846B2 (en) | 2014-04-21 | 2021-07-22 | Natera, Inc. | Detecting mutations and ploidy in chromosomal segments |
| ES2791328T3 (es) | 2014-10-01 | 2020-11-03 | Chronix Biomedical | Métodos de cuantificación de ADN acelular |
| US9745618B2 (en) | 2014-11-19 | 2017-08-29 | Roche Molecular Systems, Inc. | Photoblocked probes and methods for sequential detection of nucleic acids |
| US9920381B2 (en) * | 2014-12-02 | 2018-03-20 | Roche Molecular Systems, Inc. | Compositions and methods for detecting MECC-containing methicillin-resistant Staphylococcus aureus |
| US9909169B2 (en) | 2014-12-17 | 2018-03-06 | Roche Molecular Systems, Inc. | Allele-specific amplification of nucleic acids using blocking oligonucleotides for wild type suppression |
| US9857328B2 (en) | 2014-12-18 | 2018-01-02 | Agilome, Inc. | Chemically-sensitive field effect transistors, systems and methods for manufacturing and using the same |
| US10020300B2 (en) | 2014-12-18 | 2018-07-10 | Agilome, Inc. | Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids |
| CA2971589C (en) | 2014-12-18 | 2021-09-28 | Edico Genome Corporation | Chemically-sensitive field effect transistor |
| US9618474B2 (en) | 2014-12-18 | 2017-04-11 | Edico Genome, Inc. | Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids |
| US10006910B2 (en) | 2014-12-18 | 2018-06-26 | Agilome, Inc. | Chemically-sensitive field effect transistors, systems, and methods for manufacturing and using the same |
| US9859394B2 (en) | 2014-12-18 | 2018-01-02 | Agilome, Inc. | Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids |
| CN107849603B (zh) | 2015-04-24 | 2022-01-28 | 阿提拉生物系统公司 | 利用有限核苷酸组成的引物扩增 |
| EP3294906B1 (en) | 2015-05-11 | 2024-07-10 | Natera, Inc. | Methods for determining ploidy |
| US9970062B2 (en) * | 2015-08-06 | 2018-05-15 | Roche Molecular Systems, Inc. | Compositions and methods for detection of mycobacterium tuberculosis |
| US9382582B1 (en) * | 2015-08-25 | 2016-07-05 | Tracy Hayden | Methods, compositions and kits for enriching for a minor template amplification product in a mixed template amplification reaction |
| WO2017121836A1 (en) | 2016-01-15 | 2017-07-20 | Thermo Fisher Scientific Baltics Uab | Thermophilic dna polymerase mutants |
| CN108779500B (zh) | 2016-03-11 | 2022-12-13 | 豪夫迈·罗氏有限公司 | 用于检测寨卡病毒的组合物和方法 |
| JP6681804B2 (ja) * | 2016-03-30 | 2020-04-15 | 大研医器株式会社 | 変異プライマーの設計方法 |
| WO2017169119A1 (ja) * | 2016-03-30 | 2017-10-05 | 大研医器株式会社 | 変異プライマーの設計方法 |
| EP3459115A4 (en) | 2016-05-16 | 2020-04-08 | Agilome, Inc. | GRAPHEN-FET DEVICES, SYSTEMS AND METHODS FOR USE THEREOF FOR SEQUENCING NUCLEIC ACIDS |
| JP7098536B2 (ja) | 2016-05-27 | 2022-07-11 | エフ．ホフマン－ラ ロシュ アーゲー | 膣トリコモナスの検出のための組成物及び方法 |
| US10612101B2 (en) * | 2016-05-27 | 2020-04-07 | Roche Molecular Systems, Inc. | Compositions and methods for detection of Mycoplasma genitalium |
| US10934597B2 (en) * | 2016-05-27 | 2021-03-02 | Roche Molecular Systems, Inc. | Compositions and methods for detection of trichomonas vaginalis |
| US20170356025A1 (en) | 2016-06-14 | 2017-12-14 | Roche Molecular Systems, Inc. | Internal control probes for improving pcr assay performance |
| JP6999645B2 (ja) | 2016-08-02 | 2022-02-04 | エフ．ホフマン－ラ ロシュ アーゲー | 核酸の増幅及び検出／定量の効率を改良するためのヘルパーオリゴヌクレオチド |
| WO2018067517A1 (en) | 2016-10-04 | 2018-04-12 | Natera, Inc. | Methods for characterizing copy number variation using proximity-litigation sequencing |
| US10793923B2 (en) | 2016-11-09 | 2020-10-06 | Roche Molecular Systems, Inc. | Compositions and methods for detection of BK virus |
| CN110225919A (zh) | 2016-11-10 | 2019-09-10 | 达丽斯生物医学公司 | 用于扩增和检测淋病奈瑟氏菌的多核苷酸 |
| CN110177887B (zh) | 2016-11-10 | 2024-10-29 | 达丽斯生物医学公司 | 用于扩增和检测沙眼衣原体的多核苷酸 |
| US10011870B2 (en) | 2016-12-07 | 2018-07-03 | Natera, Inc. | Compositions and methods for identifying nucleic acid molecules |
| US20190211377A1 (en) | 2016-12-22 | 2019-07-11 | Roche Molecular Systems, Inc. | Cobra probes to detect a marker for epidemic ribotypes of clostridium difficile |
| CA3049139A1 (en) | 2017-02-21 | 2018-08-30 | Natera, Inc. | Compositions, methods, and kits for isolating nucleic acids |
| WO2019002178A1 (en) | 2017-06-26 | 2019-01-03 | Thermo Fisher Scientific Baltics Uab | DNA MUTANTS THERMOPHILIC POLYMERASES |
| US10760137B2 (en) | 2017-07-18 | 2020-09-01 | Roche Molecular Systems, Inc. | Compositions and methods for detection of Babesia |
| US11591645B2 (en) * | 2017-08-31 | 2023-02-28 | Seegene, Inc. | Evaluation of performance of components using a pair of dimer-forming primers |
| WO2019063661A1 (en) | 2017-09-29 | 2019-04-04 | Roche Diagnostics Gmbh | COMPOSITIONS AND METHODS FOR THE DETECTION OF TRICHOMONAS VAGINALIS |
| WO2021130199A2 (en) | 2019-12-27 | 2021-07-01 | F. Hoffmann-La Roche Ag | Compositions and methods for detecting methicillin-resistant staphylococcus aureus |
| US12084720B2 (en) | 2017-12-14 | 2024-09-10 | Natera, Inc. | Assessing graft suitability for transplantation |
| EP3768832B1 (en) | 2018-03-21 | 2023-11-29 | F. Hoffmann-La Roche AG | Dna polymerases for efficient and effective incorporation of methylated-dntps |
| CA3090426A1 (en) | 2018-04-14 | 2019-10-17 | Natera, Inc. | Methods for cancer detection and monitoring by means of personalized detection of circulating tumor dna |
| US10450616B1 (en) | 2018-05-09 | 2019-10-22 | Talis Biomedical Corporation | Polynucleotides for the amplification and detection of Chlamydia trachomatis |
| US11332787B2 (en) | 2018-06-29 | 2022-05-17 | Pacific Biosciences Of California, Inc. | Methods and compositions for delivery of molecules and complexes to reaction sites |
| US11525159B2 (en) | 2018-07-03 | 2022-12-13 | Natera, Inc. | Methods for detection of donor-derived cell-free DNA |
| JP7478734B2 (ja) | 2018-12-03 | 2024-05-07 | エフ． ホフマン－ラ ロシュ アーゲー | カンジダ・アウリス（ｃａｎｄｉｄａ ａｕｒｉｓ）の検出のための組成物および方法 |
| KR102141312B1 (ko) * | 2019-04-19 | 2020-08-04 | 주식회사 제노헬릭스 | 짧은 RNA-primed 제노 센서 모듈 증폭 기반 짧은 RNA 탐지 기법 |
| JP2022531348A (ja) | 2019-05-02 | 2022-07-06 | エフ．ホフマン－ラ ロシュ アーゲー | 鎖分離温度に基づくＤＮＡに対してＲＮＡ標的の優先的／選択的増幅のためのｄＩＴＰの利用 |
| EP3966351A1 (en) | 2019-05-07 | 2022-03-16 | F. Hoffmann-La Roche AG | Compositions and methods for detection of neisseria gonorroheae |
| US20220251670A1 (en) | 2019-07-25 | 2022-08-11 | Roche Molecular Systems, Inc. | Compositions and methods for detection of epstein barr virus (ebv) |
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Family Cites Families (8)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US4711955A (en) * | 1981-04-17 | 1987-12-08 | Yale University | Modified nucleotides and methods of preparing and using same |
| US5256549A (en) * | 1986-03-28 | 1993-10-26 | Chiron Corporation | Purification of synthetic oligomers |
| US5459255A (en) * | 1990-01-11 | 1995-10-17 | Isis Pharmaceuticals, Inc. | N-2 substituted purines |
| AU665338B2 (en) * | 1990-07-24 | 1996-01-04 | F. Hoffmann-La Roche Ag | The reduction of non-specific amplification during (in vitro) nucleic acid amplification using modified nucleic acid bases |
| US5338671A (en) * | 1992-10-07 | 1994-08-16 | Eastman Kodak Company | DNA amplification with thermostable DNA polymerase and polymerase inhibiting antibody |
| ES2107205T3 (es) * | 1993-03-30 | 1997-11-16 | Sanofi Sa | Analogos de nucleosidos aciclicos y secuencias oligonucleotidas que los contienen. |
| US5599662A (en) * | 1995-02-17 | 1997-02-04 | Hoffmann-La Roche Inc. | Oliconucleotide primers and probes for the detection of HIV-1 |
| US5837442A (en) * | 1995-11-29 | 1998-11-17 | Roche Molecular Systems, Inc. | Oligonucleotide primers for amplifying HCV nucleic acid |
-
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Cited By (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US12098368B2 (en) | 2018-10-29 | 2024-09-24 | Cepheid | Exponential base-3 and greater nucleic acid amplification with reduced amplification time |
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