JP2011092191A - 並行オリゴヌクレオチド伸長によるdna配列決定 - Google Patents
並行オリゴヌクレオチド伸長によるdna配列決定 Download PDFInfo
- Publication number
- JP2011092191A JP2011092191A JP2010257918A JP2010257918A JP2011092191A JP 2011092191 A JP2011092191 A JP 2011092191A JP 2010257918 A JP2010257918 A JP 2010257918A JP 2010257918 A JP2010257918 A JP 2010257918A JP 2011092191 A JP2011092191 A JP 2011092191A
- Authority
- JP
- Japan
- Prior art keywords
- oligonucleotide
- polynucleotide
- probe
- sequence
- starting
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Pending
Links
Images
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H21/00—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids
- C07H21/02—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids with ribosyl as saccharide radical
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H21/00—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids
- C07H21/04—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids with deoxyribosyl as saccharide radical
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
- Y02P—CLIMATE CHANGE MITIGATION TECHNOLOGIES IN THE PRODUCTION OR PROCESSING OF GOODS
- Y02P20/00—Technologies relating to chemical industry
- Y02P20/50—Improvements relating to the production of bulk chemicals
- Y02P20/582—Recycling of unreacted starting or intermediate materials
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
- Y10T—TECHNICAL SUBJECTS COVERED BY FORMER US CLASSIFICATION
- Y10T436/00—Chemistry: analytical and immunological testing
- Y10T436/14—Heterocyclic carbon compound [i.e., O, S, N, Se, Te, as only ring hetero atom]
- Y10T436/142222—Hetero-O [e.g., ascorbic acid, etc.]
- Y10T436/143333—Saccharide [e.g., DNA, etc.]
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Health & Medical Sciences (AREA)
- Biochemistry (AREA)
- Molecular Biology (AREA)
- Engineering & Computer Science (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- General Health & Medical Sciences (AREA)
- Biotechnology (AREA)
- Genetics & Genomics (AREA)
- Wood Science & Technology (AREA)
- Zoology (AREA)
- Physics & Mathematics (AREA)
- Immunology (AREA)
- Microbiology (AREA)
- Biophysics (AREA)
- Analytical Chemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Investigating Or Analysing Biological Materials (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
Abstract
【解決手段】1)ポリヌクレオチド中のヌクレオチド配列を同定する方法であって、以下の工程:(a)開始オリゴヌクレオチドを、オリゴヌクレオチドプローブと該開始オリゴヌクレオチドとを連結することによってポリヌクレオチドに沿って伸長させ、伸長した二重鎖を形成させる工程;(b)該ポリヌクレオチドの1つ以上のヌクレオチドを同定する工程;および(c)ヌクレオチドの配列が決定されるまで工程(a)および(b)を繰り返す工程、を包含する、方法。
【選択図】なし
Description
本発明は、一般にポリヌクレオチドのヌクレオチド配列を決定する方法に関し、さらに詳しくは、オリゴヌクレオチドブロックの連続的な連結により1つ以上のプライマーを段階的に伸長することによってテンプレートにおけるヌクレオチドを同定する方法に関する。
現在利用可能な技術でのポリヌクレオチドの分析は、試験ポリヌクレオチドが標準または単離されたフラグメントと同一であるかまたは異なるかの確認から、試験ポリヌクレオチドの各ヌクレオチドの明白な同定および順序付けまでの範囲の情報を提供する。このような技術は、遺伝子の機能および制御を理解するのに、および分子生物学の基本的技術の多くを適用するのに非常に重要であるだけでなく、これらはまた、ゲノム解析および非常に多くの非研究的適用(例えば、遺伝的同定、法医学分析、遺伝学カウンセリング、医学診断など)における手段としてますます重要となった。これらの後者の適用において、部分的な配列情報を提供する技術(例えば、フィンガープリント法および配列比較)および完全な配列決定を提供する技術の両方が共に使用されてきた。例えば、Gibbsら,Proc.Natl.Acad.Sci.,86:1919−1923(1989);Gyllenstenら,Proc.Natl.Acad.Sci.,85:7652−7656(1988);Carranoら,Genomics,4:129−136(1989);Caetano−Anollesら,Mol.Gen.Genet.,235:157−165(1992);BrennerおよびLivak,Proc,Natl.Acad.Sci.,86:8902−8906(1989);Greenら,PCR Methods and Applications,1:77−90(1991);およびVersalovicら,Nucleic Acids Research,19:6823−6831(1991)。
1)ポリヌクレオチド中のヌクレオチド配列を同定する方法であって、以下の工程:
(a)開始オリゴヌクレオチドを、オリゴヌクレオチドプローブと該開始オリゴヌクレオチドとを連結することによってポリヌクレオチドに沿って伸長させ、伸長した二重鎖を形成させる工程;
(b)該ポリヌクレオチドの1つ以上のヌクレオチドを同定する工程;および
(c)ヌクレオチドの配列が決定されるまで工程(a)および(b)を繰り返す工程、
を包含する、方法。
(2)前記オリゴヌクレオチドプローブが前記開始オリゴヌクレオチドに対して遠位の末端に鎖終結部分を有する、請求項1に記載の方法。
(3)前記同定の工程が、前記鎖終結部分を除去する工程、および1つ以上の標識した鎖終結ヌクレオシド三リン酸の存在下で核酸ポリメラーゼを用いて該オリゴヌクレオチドプローブを伸長させる工程を包含する、請求項2に記載の方法。
(4)前記伸長した二重鎖上に伸長可能な末端を再生する工程をさらに包含する、請求項3に記載の方法。
(5)前記オリゴヌクレオチドプローブが4つのリボヌクレオチドのサブ配列を包含し、そして前記再生の工程が該オリゴヌクレオチドプローブをRNase Hを用いて切断する工程を包含する、請求項4に記載の方法。
(6)前記鎖終結部分が3’ホスフェートである、請求項5に記載の方法。
(7)伸長した二重鎖または前記開始オリゴヌクレオチドが前記オリゴヌクレオチドプローブに連結できない場合は常に、該伸長した二重鎖または該開始オリゴヌクレオチドにキャップ形成させる工程をさらに包含する、請求項2に記載の方法。
(8)前記伸長した二重鎖上に伸長可能な末端を再生する工程をさらに包含する、請求項2に記載の方法。
(9)前記再生の工程が、前記伸長した二重鎖において化学的に切断可能なヌクレオシド間結合を切断する工程を包含する、請求項8に記載の方法。
(10)前記化学的に切断可能なヌクレオシド間結合がホスホルアミデートである、請求項9に記載の方法。
(11)前記再生の工程が、前記伸長した二重鎖においてヌクレオシド間結合を酵素的に切断する工程を包含する、請求項8に記載の方法。
(12)前記オリゴヌクレオチドプローブが4種のリボヌクレオチドのサブ配列を包含し、そして前記再生の工程が該オリゴヌクレオチドプローブをRNase Hを用いて切断する工程を包含する、請求項11に記載の方法。
(13)ポリヌクレオチドのヌクレオチド配列を決定する方法であって、以下の工程:
(a)該ポリヌクレオチドを含むテンプレートを提供する工程;
(b)該ポリヌクレオチドに近接する該テンプレートと二重鎖を形成する開始オリゴヌクレオチドを提供する工程;
(c)該開始オリゴヌクレオチドに近接する該テンプレートにオリゴヌクレオチドプローブをアニールする工程;
(d)該オリゴヌクレオチドプローブを該開始オリゴヌクレオチドに連結させて、伸長した二重鎖を形成させる工程;
(e)該連結されたオリゴヌクレオチドプローブ上の標識によって該ポリヌクレオチドの1つ以上のヌクレオチドを同定する工程;および
(f)該ポリヌクレオチドのヌクレオチド配列が決定されるまで工程(c)〜(e)を繰り返す工程、
を包含する、方法。
(14)前記オリゴヌクレオチドプローブが前記開始オリゴヌクレオチドに対して遠位の末端に鎖終結部分を有し、そして前記方法が該オリゴヌクレオチドプローブ上に伸長可能な末端を再生する工程をさらに包含する、請求項13に記載の方法。
(15)前記オリゴヌクレオチドプローブに連結できない前記伸長した二重鎖または前記開始オリゴヌクレオチドにキャップ形成する工程をさらに包含する、請求項14に記載の方法。
(16)前記同定の工程が前記ポリヌクレオチドの1つのヌクレオチドを同定することよりなる、請求項14に記載の方法。
(17)前記同定の工程が前記鎖終結部分を除去する工程、および1つ以上の標識された鎖終結ヌクレオシド三リン酸の存在下で核酸ポリメラーゼを用いて前記オリゴヌクレオチドプローブを伸長させる工程を包含する、請求項16に記載の方法。
(18)オリゴヌクレオチドプローブであって、以下の式:
HO−(3’)(B)j(5’)−OP(=O)(O−)NH−(B)k−Bt *
を有し、ここで:
Bはヌクレオシドまたはそのアナログであり;
jは1〜12の範囲であり;
kはjとkとの合計が12以下であるように、0〜12の範囲であり;
Bt *は標識された鎖終結部分である、
オリゴヌクレオチドプローブ。
(19)以下からなる群より選択されるオリゴヌクレオチドプローブであって:
OP(=O)(O−)O−(5’)(B)sRRRR(B)wBt *、
HO−(3’)(B)sRRRR(B)wBt *、および
OP(=O)(O−)O−(5’)(B)sRRRR(B)w(3’)OP(=O)(O−)O
ここで:
Bはデオキシリボヌクレオチドまたはそのアナログであり;
Rはリボヌクレオチドであり;
sは1〜8の範囲であり;
wはjとkとの合計が8以下であるように0〜8の範囲であり;
Bt *は標識された鎖終結部分である、
オリゴヌクレオチドプローブ。
本発明は、一本鎖テンプレートに沿った二重鎖伸長の繰り返しサイクルに基づく核酸配列分析方法を提供する。好ましくは、このような伸長は、開始オリゴヌクレオチドとテンプレートとの間に形成される二重鎖から出発する。開始オリゴヌクレオチドを、最初の伸長サイクルにおいて、オリゴヌクレオチドプローブをその末端に連結することにより伸長し、伸長した二重鎖を形成させる。次いで、伸長した二重鎖を、その後の連結サイクルによって繰り返し伸長させる。各サイクルの間に、首尾よく連結されたオリゴヌクレオチドプローブ上、またはオリゴヌクレオチドプローブと会合した標識によって、テンプレート中の1つ以上ヌクレオチドの同一性を決定する。好ましくは、オリゴヌクレオチドプローブは、1回のサイクルで伸長した二重鎖の伸長が1回だけ起こるように、末端の位置にブロッキング部分(例えば、鎖終結ヌクレオチド)を有する。二重鎖を、次のサイクルでブロッキング部分を除去し、そして伸長可能な末端を再生することによってさらに伸長させる。
ポリヌクレオチドに関して本明細書中で使用する「配列決定」、「ヌクレオチド配列の決定」、「配列決定」および同様の用語は、ポリヌクレオチドの部分配列および全長配列の情報の決定を含む。すなわち、この用語は、配列比較、フィンガープリント法、標識ポリヌクレオチドについての同様のレベルの情報、および試験ポリヌクレオチドの各ヌクレオシドの明確な同定および順序付けを含む。
本発明は、同様のサイズのDNAフラグメントの電気泳動による分離を不要とし、そしてゲルまたは同様の媒体中のDNAフラグメントの空間的に重なるバンドの検出および分析に関する困難をなくす核酸の配列決定方法を提供する。本発明はまた、DNAポリメラーゼを用いて長い一本鎖テンプレートからDNAフラグメントを作製する必要もない。
好ましくは、標的ポリヌクレオチドを結合領域に連結してテンプレートを形成し、そしてテンプレートを複雑かつ時間を消費する精製工程を伴わない試薬の連続的適用を可能とする固相支持体(例えば、磁性粒子、ポリマーマイクロスフィア、フィルター物質など)に付着させる。標識ポリヌクレオチドの長さは広範囲に変化し得る;しかし、調製の便宜のためには、従来の配列決定で使用される長さが好ましい。例えば、数百塩基対(200〜300)から1〜2キロ塩基対までの範囲の長さが好ましい。
1つの局面において、本発明は、オリゴヌクレオチドプローブの連結および同定の繰り返し工程を必要とする。しかしながら、同一工程における同一の伸長した二重鎖に対する複数プローブの連結は、通常は同定の問題を誘引するであろうから、多重伸長を防止しそして伸長可能な末端を再生するのに有用である。さらに、もし連結工程が100%効果的でなければ、それらがいずれのさらなる連結工程にも参画しないように、連結を受けない伸長二重鎖にキャップ形成するのが望ましいであろう。すなわち、キャップ形成工程は、好ましくは、ポリヌクレオチド合成のような他の合成化学プロセスから類推して、連結工程の後に起こる(例えば、Andrusら、米国特許第4,816,571号)。これは、その後の同定工程で生じるシグナルから潜在的に有意なノイズの源を除去するであろう。
HO−(3’)BBB...BBB(5’)−OP(=O)(O−)NH−Bt *
ここで、BBB...BBBはオリゴヌクレオチドプローブ(202)のヌクレオチドの配列を表し、Bt *はホスホルアミデート基、または光切断結合のような、他の不安定結合を介してオリゴヌクレオチドの5’炭素に連結した標識された鎖終結部分である。Bt *の性質は広く変化し得る。それは連続的連結を防止する限り、標識されたヌクレオシド(例えば、5’P3’Nホスホルアミデートを介してカップリングしたもの)または他の部分であり得る。それは、AgrawalおよびTang、国際出願第PCT/US91/08347号に記載されるように、単にリンカーによって結合された標識であり得る。オリゴヌクレオチドプローブの重要な特徴は、アニーリングおよび連結(204)の後に、標識を除去でき、例えば、Letsingerら、J.Am.Chem.Soc.,94:292−293(1971);Letsingerら、Biochem.,15:2810−2816(1976);Gryaznovら,Nucleic Acid Research,20:3403−3409(1992);および同様の文献によって教示されるように、ホスホルアミデート結合を酸で処理することによって、伸長可能な末端を再生できることである。例えば、ホスホルアミデートの加水分解は、室温における40分間のジクロロメタン中の0.8%トリフルオロ酢酸での処理によって達成され得る。このようにして、Bt *上の標識を介して連結したプローブをアニーリングし、連結し、そして同定した後、酸加水分解(206)により鎖終結部分を切断し、それによりリン結合を破壊し、連結したオリゴヌクレオチド上に5’モノホスフェートを残しておく。この工程は連続的サイクルで繰り返され得る(208)。この実施態様の1つの局面において、単一の開始オリゴヌクレオチドを、1つのヌクレオチドのみが各配列決定サイクルで同定されるように使用し得る。このような実施態様では、このプローブは好ましくは以下の形態を有する:
HO−(3’)B(5’)−OP(=O)(O−)NHBB...BBB−Bt *。
HO−(3’)BB...Bp^B...BB(5’)−OP(=O)(O−)NH−Bt *
ここで、「p^」はホスホロチオエート、メチルホスホネートなどのようなエキソヌクレアーゼ耐性結合である。このような実施態様において、キャップ形成は、未連結伸長二重鎖を切断してエキソヌクレアーゼ耐性結合に戻すλエキソヌクレアーゼのようなエキソヌクレアーゼで伸長二重鎖を処理することによって達成され得る。次いで、伸長二重鎖の5’末端におけるこの結合の存在は、その後の連結にそれが関与することから防止する。明らかに、多くの他のキャップ形成方法、例えばアシル化、不活性オリゴヌクレオチドの連結などを使用し得る。遊離3’ヒドロキシルが関与する場合、キャップ形成は、鎖終結ヌクレオシド三リン酸、例えばジデオキシヌクレオシド三リン酸などの存在下で、DNAポリメラーゼで二重鎖を伸長させることによって達成され得る。
OP(=O)(O−)O−(5’)BBB...BBBRRRRBt *。
HO−(3’)BBB...BBBRRRRB..BBt *。
OP(=O)(O−)O−(5’)BBB...BBBRRRRB...B(3’)OP(=O)(O−)O
がテンプレート(20)にアニールされ、そして連結(404)され、伸長した二重鎖(406)が形成される。同一サイクルにおいてプローブの連続的連結を防ぐ3’一リン酸がホスファターゼ(408)で除去され、遊離の3’ヒドロキシル(410)が露出される。明らかに、別のブロッキングアプローチも使用され得る。伸長した二重鎖(406)は、標識したジデオキシヌクレオシド三リン酸(412)の存在下で、核酸ポリメラーゼによってさらに伸長し、それにより、取り込まれたジデオキシヌクレオシドの標識によってテンプレート(20)のヌクレオチドの同定が可能となる。次いで、標識されたジデオキシヌクレオチドおよびプローブ(402)の一部は、伸長した二重鎖(406)上に伸長可能な末端を再生するために、例えば、RNase H処理によって切断される(414)。次いで、サイクルが繰り返される(416)。
ランキング配列(5’→3’)
1 GCGCGC
2 CGCGCG
3 CCCGCG
4 CGCCCG
5 CGCGCC
6 CGCGGC
7 CGGCGC
8 GCCGCG
9 GCGCCG
10 GCGCGG
・ ・
・ ・
・ ・
4087 TCATAT
4088 TGATAT
4089 CATATA
4090 TATATG
4091 ATCATG
4092 ATGATG
4093 CATCAT
4094 CATGAT
4095 CATATG
4096 ATATAT
このように、もしストリンジェンシークラスが最初の10個の6マーからなるのであれば、最初の(最も3’側の)位置についての混合物モノマーは、0:4:6:0(A:C:G:T)となるであろうし、第2の位置については、それは0:6:4:0となるであろう(以下、同様)。もしストリンジェンシークラスが最後の10個の6マーからなるならば、最初の位置についてのモノマーの混合物は1:0:4:5となるであろうし、第2の位置については、それは5:0:0:5であろう(以下、同様)。次いで、得られた混合物は、加熱溶出によって所望のストリンジェンシークラスの配列につきさらに富化され得る(例えば、Miyazawaら、J.Mol.Biol.,11:223−237(1965))。
4つの開始オリゴヌクレオチドを用いてpUC19から増幅された
標的ポリヌクレオチドの配列決定
本実施例においては、結合領域およびpUC19プラスミドの一部を含むテンプレートをPCRによって増幅し、そして磁気ビーズに付着させる。4つの開始オリゴヌクレオチドを、下記のように別々の反応で使用する。以下の式に示すように、4つの中央リボヌクレオチドならびに、両5’および3’一リン酸を有する8マーのオリゴヌクレオチドプローブを使用する:
OP(=O)(O−)O−(5’)BBRRRRBB(3’)−OP(=O)(O−)O。
CCTCTCCCTTCCCTCTCCTCCCTCTCCCCTCTCCCTC
TCGAGGAGAGGGAAGGGAGAGGAGGGAGAGGGGAGAGGGAGGGCC。
(磁気ビーズ)−(リンカー)−(3’)−CTCCCTCTCCCCTCTCCCTCCTC−TCCCTTCCTCTCCTCGAGCTTAAGT...CTCGACG−(5’)。
5’−GAGGAGAGGGAAGGAGAGGAG
5’−GGAGGAGAGGGAAGGAGAGGA
5’−GGGAGGAGAGGGAAGGAGAGG
5’−AGGGAGGAGAGGGAAGGAGAG。
ある開始オリゴヌクレオチドを用いるpUC19から増幅された標的ポリヌクレオチドの配列決定
この実施例において伸長は5’→3’方向であるので、ビオチン部分を結合領域のCTリッチストランドにハイブリダイズするプライマーの5’末端に付着させる以外は、本実施例では、実施例1に従ってテンプレートを調製する。このようにして、本実施例では、一本鎖テンプレートの結合領域はGAリッチなセグメントである(本質的には、実施例1の結合領域の相補体)。配列5’−xGAGGGAGAGGGGAGAGGG−3’および5’−ACCGTCTCCGGGAGCTGC−3’(ここで「x」は製造業者のプロトコル付きの市販されている試薬(例えば、Aminolinkアミノアルキルホスホルアミダイト連結剤(Applied Biosystems,Foster City,California)およびClontech Laboratories(Palo Alto,California)から入手可能なビオチン−X−NHSエステル)を用い、合成の間に付着される5’ビオチン部分である)を有する2つの18マーのオリゴヌクレオチドプローブを使用する。
5’−OP(=O)(O−)O−CCTCTCCCTTCCCTCTCCTCC−3’。
以下の式に示される、プローブの最も3’側と3’側から2番目のヌクレオシドとの間に酸不安定ホスホルアミデート結合を有する6マーのオリゴヌクレオチドプローブを使用する:
HO−(3’)B(5’)−OP(=O)(O−)NH−(3’)BBBBBt *
ここで、標識は最も3’側の同一性に対応するように(従って、16の異なる標識ジデオキシヌクレオシドをプローブの合成に使用する)、Bt *はJOE−、FAM−、TAMRA−、またはROX−標識ジデオキシヌクレオシドである。
Claims (16)
- ポリヌクレオチドのヌクレオチド配列を決定する方法であって、以下の工程:
(a)既知配列を有する結合領域及び未知配列を有する標的領域を含む第一のテンプレートポリヌクレオチドを提供する工程;
(b)テンプレートに沿ったテンプレート依存方法で複数の開始オリゴヌクレオチドを伸長する工程であって、特定の開始オリゴヌクレオチドの伸長方法は、
工程(a)で提供される第一のテンプレートポリヌクレオチドと開始オリゴヌクレオチドの配列を含む第二のポリヌクレオチドとの間に二重鎖を形成する工程であって、開始オリゴヌクレオチドは第一のテンプレートポリヌクレオチドの結合領域の一部とハイブリダイズする工程
異なる配列を有する複数の異なるオリゴヌクレオチドプローブを提供する工程
異なるオリゴヌクレオチドプローブの一つを第二のポリヌクレオチドに連結することにより、第二のポリヌクレオチドを伸長し、より長い第二のポリヌクレオチドを作り出す工程であって、連結されたオリゴヌクレオチドプローブは第一のテンプレートポリヌクレオチドの配列に依存し、連結されたオリゴヌクレオチドプローブは提供されるオリゴヌクレオチドプローブ中の別のオリゴヌクレオチドプローブとはさらに連結される能力を有しない、工程
第二のポリヌクレオチドの伸長において連結されたオリゴヌクレオチドプローブに会合した標識を検出する工程であって、標識は連結されたオリゴヌクレオチドプローブの塩基に対応するが、連結されるオリゴヌクレオチドプローブの全配列には対応しない、工程
を含む工程;および
(c)複数の開始オリゴヌクレオチドの伸長の検出の組み合わせに基づいて、未知配列の塩基の連続する配列を決定する工程;
を備える、方法。 - 提供されるオリゴヌクレオチドプローブのうち少なくともいくつかは、少なくとも一つのデオキシイノシン塩基を含む、請求項1に記載の方法。
- 提供されるオリゴヌクレオチドプローブは8ヌクレオチド、9ヌクレオチド及び12ヌクレオチドから選択される所定の長さである、請求項1または2に記載の方法。
- 連結したオリゴヌクレオチドプローブが連結した末端とは反対側の連結したプローブの末端ヌクレオチドに、標識が結合している、請求項1〜3のいずれか一項に記載の方法。
- 第一のポリヌクレオチドを増幅して、工程(b)で使用する第一のポリヌクレオチドを作製する工程をさらに含む、請求項1〜4のいずれか一項に記載の方法。
- 増幅した第一のポリヌクレオチドは、ビーズに担持された提供された第一のポリヌクレオチドの複数のコピーを有する、請求項5に記載の方法。
- 複数の異なる第一のポリヌクレオチドの伸長及び同定工程を並行して複数サイクル行うことに基づいて、異なるポリヌクレオチドの異なる未知配列の塩基の連続する配列を決定する工程をさらに備える、請求項1〜6のいずれか一項に記載の方法。
- 複数の異なる第一のポリヌクレオチドは、お互いに共通の結合領域における既知配列を有する、請求項7に記載の方法。
- 異なる第一のポリヌクレオチドは、固相支持体に結合している、請求項7又は8に記載の方法。
- 配列決定されるポリヌクレオチドにおける各ヌクレオシドの順序を決定することをさらに含む、請求項1〜9のいずれか一項に記載の方法。
- 開始オリゴヌクレオチドは、少なくとも20塩基の長さであり、かつ、結合領域は少なくとも20塩基の長さである、請求項1〜10のいずれか一項に記載の方法。
- 第二のポリヌクレオチドの少なくともいくつかについて、第二のポリヌクレオチドはオリゴヌクレオチドプローブを開始オリゴヌクレオチドに連結することにより形成され、オリゴヌクレオチドプローブはさらなる伸長ができず、オリゴヌクレオチドプローブ上の伸長可能な末端を再生して、工程(b)で提供されるプローブによってさらなる伸長が可能な伸長した二重鎖を形成する、請求項1〜11のいずれか一項に記載の方法。
- 複数の開始オリゴヌクレオチドは同一の配列を有する、請求項1〜12のいずれか一項に記載の方法。
- 開始オリゴヌクレオチドは、3’から5’方向又は5’から3’方向のいずれかに伸長され得る、請求項1〜13のいずれか一項に記載の方法。
- 第二のポリヌクレオチドを伸長する工程は、第二のポリヌクレオチドを5’から3’の方向に伸長することを含む、請求項1〜13のいずれか一項に記載の方法。
- 異なる配列を有する複数の異なるオリゴヌクレオチドプローブを提供する工程は、50−250の異なる配列のオリゴヌクレオチドプローブを同時に提供することを含む、請求項1〜15のいずれかに記載の方法。
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US08/424,663 US5750341A (en) | 1995-04-17 | 1995-04-17 | DNA sequencing by parallel oligonucleotide extensions |
Related Parent Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
JP2007185093A Division JP2007282639A (ja) | 1995-04-17 | 2007-07-13 | 平行オリゴヌクレオチド伸長によるdna配列決定 |
Publications (1)
Publication Number | Publication Date |
---|---|
JP2011092191A true JP2011092191A (ja) | 2011-05-12 |
Family
ID=23683421
Family Applications (5)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
JP53184896A Expired - Lifetime JP4546582B2 (ja) | 1995-04-17 | 1996-04-16 | 平行オリゴヌクレオチド伸長によるdna配列決定 |
JP2007185093A Pending JP2007282639A (ja) | 1995-04-17 | 2007-07-13 | 平行オリゴヌクレオチド伸長によるdna配列決定 |
JP2007333327A Pending JP2008086328A (ja) | 1995-04-17 | 2007-12-25 | 平行オリゴヌクレオチド伸長によるdna配列決定 |
JP2010257927A Expired - Lifetime JP5279800B2 (ja) | 1995-04-17 | 2010-11-18 | 並行オリゴヌクレオチド伸長によるdna配列決定 |
JP2010257918A Pending JP2011092191A (ja) | 1995-04-17 | 2010-11-18 | 並行オリゴヌクレオチド伸長によるdna配列決定 |
Family Applications Before (4)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
JP53184896A Expired - Lifetime JP4546582B2 (ja) | 1995-04-17 | 1996-04-16 | 平行オリゴヌクレオチド伸長によるdna配列決定 |
JP2007185093A Pending JP2007282639A (ja) | 1995-04-17 | 2007-07-13 | 平行オリゴヌクレオチド伸長によるdna配列決定 |
JP2007333327A Pending JP2008086328A (ja) | 1995-04-17 | 2007-12-25 | 平行オリゴヌクレオチド伸長によるdna配列決定 |
JP2010257927A Expired - Lifetime JP5279800B2 (ja) | 1995-04-17 | 2010-11-18 | 並行オリゴヌクレオチド伸長によるdna配列決定 |
Country Status (8)
Country | Link |
---|---|
US (3) | US5750341A (ja) |
EP (5) | EP0871646B1 (ja) |
JP (5) | JP4546582B2 (ja) |
AU (1) | AU718937B2 (ja) |
CA (1) | CA2218017C (ja) |
DE (1) | DE10184524T1 (ja) |
DK (1) | DK2298787T3 (ja) |
WO (1) | WO1996033205A1 (ja) |
Families Citing this family (659)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US6401267B1 (en) * | 1993-09-27 | 2002-06-11 | Radoje Drmanac | Methods and compositions for efficient nucleic acid sequencing |
USRE43097E1 (en) | 1994-10-13 | 2012-01-10 | Illumina, Inc. | Massively parallel signature sequencing by ligation of encoded adaptors |
US6406848B1 (en) | 1997-05-23 | 2002-06-18 | Lynx Therapeutics, Inc. | Planar arrays of microparticle-bound polynucleotides |
US6974666B1 (en) * | 1994-10-21 | 2005-12-13 | Appymetric, Inc. | Methods of enzymatic discrimination enhancement and surface-bound double-stranded DNA |
US8236493B2 (en) * | 1994-10-21 | 2012-08-07 | Affymetrix, Inc. | Methods of enzymatic discrimination enhancement and surface-bound double-stranded DNA |
US5750341A (en) * | 1995-04-17 | 1998-05-12 | Lynx Therapeutics, Inc. | DNA sequencing by parallel oligonucleotide extensions |
EP0960215A1 (en) * | 1997-01-15 | 1999-12-01 | Brax Genomics Limited | Nucleic acid sequencing |
US6197557B1 (en) * | 1997-03-05 | 2001-03-06 | The Regents Of The University Of Michigan | Compositions and methods for analysis of nucleic acids |
US6117634A (en) * | 1997-03-05 | 2000-09-12 | The Reagents Of The University Of Michigan | Nucleic acid sequencing and mapping |
EP3034626A1 (en) | 1997-04-01 | 2016-06-22 | Illumina Cambridge Limited | Method of nucleic acid sequencing |
AU734636B2 (en) | 1997-07-11 | 2001-06-21 | Xzillion Gmbh & Co. Kg | Characterising nucleic acids |
US7875440B2 (en) | 1998-05-01 | 2011-01-25 | Arizona Board Of Regents | Method of determining the nucleotide sequence of oligonucleotides and DNA molecules |
US6780591B2 (en) | 1998-05-01 | 2004-08-24 | Arizona Board Of Regents | Method of determining the nucleotide sequence of oligonucleotides and DNA molecules |
ES2175992T3 (es) * | 1998-06-22 | 2002-11-16 | Larova Biochemie Gmbh | Obtencion de polimeros a partir de componentes nucleotidicos y/o no nucleotidicos por via enzimatica. |
AU754952B2 (en) | 1998-06-24 | 2002-11-28 | Illumina, Inc. | Decoding of array sensors with microspheres |
US5998175A (en) * | 1998-07-24 | 1999-12-07 | Lumigen, Inc. | Methods of synthesizing and amplifying polynucleotides by ligation of multiple oligomers |
US7270958B2 (en) * | 1998-09-10 | 2007-09-18 | The Regents Of The University Of Michigan | Compositions and methods for analysis of nucleic acids |
AU7569600A (en) | 1999-05-20 | 2000-12-28 | Illumina, Inc. | Combinatorial decoding of random nucleic acid arrays |
US20020025519A1 (en) * | 1999-06-17 | 2002-02-28 | David J. Wright | Methods and oligonucleotides for detecting nucleic acid sequence variations |
US6818395B1 (en) | 1999-06-28 | 2004-11-16 | California Institute Of Technology | Methods and apparatus for analyzing polynucleotide sequences |
US7211390B2 (en) * | 1999-09-16 | 2007-05-01 | 454 Life Sciences Corporation | Method of sequencing a nucleic acid |
US7244559B2 (en) * | 1999-09-16 | 2007-07-17 | 454 Life Sciences Corporation | Method of sequencing a nucleic acid |
WO2001071044A1 (en) * | 2000-03-22 | 2001-09-27 | Quantum Dot Corporation | Methods of using semiconductor nanocrystals in bead-based nucleic acid assays |
JP2004523243A (ja) | 2001-03-12 | 2004-08-05 | カリフォルニア インスティチュート オブ テクノロジー | 非同期性塩基伸長によってポリヌクレオチド配列を分析するための方法および装置 |
US7138506B2 (en) * | 2001-05-09 | 2006-11-21 | Genetic Id, Na, Inc. | Universal microarray system |
US20050260570A1 (en) * | 2001-05-29 | 2005-11-24 | Mao Jen-I | Sequencing by proxy |
JP2005520484A (ja) * | 2001-07-06 | 2005-07-14 | 454 コーポレイション | 多孔性フィルターを使用し、独立した並行する化学的微量反応を隔離するための方法 |
US20030054396A1 (en) * | 2001-09-07 | 2003-03-20 | Weiner Michael P. | Enzymatic light amplification |
US20050124022A1 (en) * | 2001-10-30 | 2005-06-09 | Maithreyan Srinivasan | Novel sulfurylase-luciferase fusion proteins and thermostable sulfurylase |
US6956114B2 (en) | 2001-10-30 | 2005-10-18 | '454 Corporation | Sulfurylase-luciferase fusion proteins and thermostable sulfurylase |
US6902921B2 (en) | 2001-10-30 | 2005-06-07 | 454 Corporation | Sulfurylase-luciferase fusion proteins and thermostable sulfurylase |
US20030166026A1 (en) * | 2002-01-09 | 2003-09-04 | Lynx Therapeutics, Inc. | Identification of specific biomarkers for breast cancer cells |
US20030170700A1 (en) * | 2002-01-09 | 2003-09-11 | Lynx Therapeutics, Inc. | Secreted and cell surface polypeptides affected by cholesterol and uses thereof |
US20030180764A1 (en) * | 2002-01-09 | 2003-09-25 | Lynx Therapeutics, Inc. | Genes affected by cholesterol treatment and during adipogenesis |
EP1523554A2 (en) * | 2002-06-12 | 2005-04-20 | Riken | Method of utilizing the 5' end of transcribed nucleic acid regions for cloning and analysis |
AU2004254552B2 (en) * | 2003-01-29 | 2008-04-24 | 454 Life Sciences Corporation | Methods of amplifying and sequencing nucleic acids |
US7575865B2 (en) * | 2003-01-29 | 2009-08-18 | 454 Life Sciences Corporation | Methods of amplifying and sequencing nucleic acids |
CN1791682B (zh) * | 2003-02-26 | 2013-05-22 | 凯利达基因组股份有限公司 | 通过杂交进行的随机阵列dna分析 |
WO2004081225A2 (en) * | 2003-03-07 | 2004-09-23 | Rubicon Genomics, Inc. | Amplification and analysis of whole genome and whole transcriptome libraries generated by a dna polymerization process |
US8206913B1 (en) | 2003-03-07 | 2012-06-26 | Rubicon Genomics, Inc. | Amplification and analysis of whole genome and whole transcriptome libraries generated by a DNA polymerization process |
EP1641809B2 (en) | 2003-07-05 | 2018-10-03 | The Johns Hopkins University | Method and compositions for detection and enumeration of genetic variations |
GB0324456D0 (en) * | 2003-10-20 | 2003-11-19 | Isis Innovation | Parallel DNA sequencing methods |
US7169560B2 (en) | 2003-11-12 | 2007-01-30 | Helicos Biosciences Corporation | Short cycle methods for sequencing polynucleotides |
DE602005020421D1 (de) | 2004-02-19 | 2010-05-20 | Helicos Biosciences Corp | Verfahren zur analyse von polynukleotidsequenzen |
EP1718769A4 (en) * | 2004-02-27 | 2008-05-14 | Harvard College | SEQUENCING IN SITU IN FLUORESCENCE OF BALLS BY POLONY TECHNOLOGY |
EP1766090B1 (en) | 2004-05-25 | 2011-04-27 | Helicos Biosciences Corporation | Methods for nucleic acid immobilisation |
US7476734B2 (en) | 2005-12-06 | 2009-01-13 | Helicos Biosciences Corporation | Nucleotide analogs |
EP1758981A4 (en) | 2004-05-28 | 2013-01-16 | Wafergen Inc | APPARATUS AND METHODS FOR PERFORMING MULTIPLEX ANALYZES |
WO2006073504A2 (en) * | 2004-08-04 | 2006-07-13 | President And Fellows Of Harvard College | Wobble sequencing |
GB0422551D0 (en) * | 2004-10-11 | 2004-11-10 | Univ Liverpool | Labelling and sequencing of nucleic acids |
US7220549B2 (en) | 2004-12-30 | 2007-05-22 | Helicos Biosciences Corporation | Stabilizing a nucleic acid for nucleic acid sequencing |
US7482120B2 (en) | 2005-01-28 | 2009-01-27 | Helicos Biosciences Corporation | Methods and compositions for improving fidelity in a nucleic acid synthesis reaction |
EP2236628A3 (en) * | 2005-02-01 | 2010-10-13 | AB Advanced Genetic Analysis Corporation | Reagents, methods and libraries for bead-based sequencing |
EP2857523A1 (en) * | 2005-02-01 | 2015-04-08 | Applied Biosystems, LLC | Method for identifying a sequence in a polynucleotide |
EP3492602A1 (en) | 2005-06-15 | 2019-06-05 | Complete Genomics, Inc. | Single molecule arrays for genetic and chemical analysis |
US7666593B2 (en) | 2005-08-26 | 2010-02-23 | Helicos Biosciences Corporation | Single molecule sequencing of captured nucleic acids |
US7960104B2 (en) * | 2005-10-07 | 2011-06-14 | Callida Genomics, Inc. | Self-assembled single molecule arrays and uses thereof |
GB0524069D0 (en) | 2005-11-25 | 2006-01-04 | Solexa Ltd | Preparation of templates for solid phase amplification |
WO2007070642A2 (en) * | 2005-12-15 | 2007-06-21 | Helicos Biosciences Corporation | Methods for increasing accuracy of nucleic acid sequencing |
US20070168197A1 (en) * | 2006-01-18 | 2007-07-19 | Nokia Corporation | Audio coding |
CA2643700A1 (en) * | 2006-02-24 | 2007-11-22 | Callida Genomics, Inc. | High throughput genome sequencing on dna arrays |
SG170028A1 (en) | 2006-02-24 | 2011-04-29 | Callida Genomics Inc | High throughput genome sequencing on dna arrays |
US20080309926A1 (en) * | 2006-03-08 | 2008-12-18 | Aaron Weber | Systems and methods for reducing detected intensity non uniformity in a laser beam |
US7397546B2 (en) * | 2006-03-08 | 2008-07-08 | Helicos Biosciences Corporation | Systems and methods for reducing detected intensity non-uniformity in a laser beam |
CA2649725A1 (en) * | 2006-04-19 | 2007-10-25 | Applera Corporation | Reagents, methods, and libraries for gel-free bead-based sequencing |
EP2032686B1 (en) * | 2006-06-23 | 2022-01-12 | Illumina, Inc. | System and method for creation of dna cluster arrays |
US20080241836A1 (en) * | 2006-08-07 | 2008-10-02 | Gafur Zainiev | Process for self-assembly of structures in a liquid |
ATE544869T1 (de) * | 2006-08-30 | 2012-02-15 | Bioventures Inc | Verfahren und substanzen zur isolierung und erkennung kleiner polynukleotide |
US7754429B2 (en) | 2006-10-06 | 2010-07-13 | Illumina Cambridge Limited | Method for pair-wise sequencing a plurity of target polynucleotides |
US8568979B2 (en) | 2006-10-10 | 2013-10-29 | Illumina, Inc. | Compositions and methods for representational selection of nucleic acids from complex mixtures using hybridization |
WO2008070352A2 (en) | 2006-10-27 | 2008-06-12 | Complete Genomics, Inc. | Efficient arrays of amplified polynucleotides |
WO2008070375A2 (en) * | 2006-11-09 | 2008-06-12 | Complete Genomics, Inc. | Selection of dna adaptor orientation |
US20080242560A1 (en) * | 2006-11-21 | 2008-10-02 | Gunderson Kevin L | Methods for generating amplified nucleic acid arrays |
US7881933B2 (en) * | 2007-03-23 | 2011-02-01 | Verizon Patent And Licensing Inc. | Age determination using speech |
WO2008151127A1 (en) * | 2007-06-04 | 2008-12-11 | President And Fellows Of Harvard College | Compounds and methods for chemical ligation |
US20090099027A1 (en) * | 2007-08-23 | 2009-04-16 | Applied Biosystems Inc. | Methods of Modifying Support Surfaces for the Immobilization of Particles and the Use of the Immobilized Particles for Analyzing Nucleic Acids |
US8759077B2 (en) | 2007-08-28 | 2014-06-24 | Lightspeed Genomics, Inc. | Apparatus for selective excitation of microparticles |
US8222040B2 (en) * | 2007-08-28 | 2012-07-17 | Lightspeed Genomics, Inc. | Nucleic acid sequencing by selective excitation of microparticles |
EP2657869A3 (en) | 2007-08-29 | 2015-06-03 | Applied Biosystems, LLC | Alternative nucleic acid sequencing methods |
JP2010539982A (ja) * | 2007-10-01 | 2010-12-24 | アプライド バイオシステムズ, エルエルシー | チェイスライゲーション配列決定法 |
US8951731B2 (en) | 2007-10-15 | 2015-02-10 | Complete Genomics, Inc. | Sequence analysis using decorated nucleic acids |
US7767441B2 (en) * | 2007-10-25 | 2010-08-03 | Industrial Technology Research Institute | Bioassay system including optical detection apparatuses, and method for detecting biomolecules |
US7811810B2 (en) | 2007-10-25 | 2010-10-12 | Industrial Technology Research Institute | Bioassay system including optical detection apparatuses, and method for detecting biomolecules |
US8415099B2 (en) | 2007-11-05 | 2013-04-09 | Complete Genomics, Inc. | Efficient base determination in sequencing reactions |
US7897344B2 (en) | 2007-11-06 | 2011-03-01 | Complete Genomics, Inc. | Methods and oligonucleotide designs for insertion of multiple adaptors into library constructs |
US8298768B2 (en) | 2007-11-29 | 2012-10-30 | Complete Genomics, Inc. | Efficient shotgun sequencing methods |
US8518640B2 (en) | 2007-10-29 | 2013-08-27 | Complete Genomics, Inc. | Nucleic acid sequencing and process |
US8617811B2 (en) * | 2008-01-28 | 2013-12-31 | Complete Genomics, Inc. | Methods and compositions for efficient base calling in sequencing reactions |
US9382585B2 (en) | 2007-10-30 | 2016-07-05 | Complete Genomics, Inc. | Apparatus for high throughput sequencing of nucleic acids |
WO2009061840A1 (en) | 2007-11-05 | 2009-05-14 | Complete Genomics, Inc. | Methods and oligonucleotide designs for insertion of multiple adaptors employing selective methylation |
WO2009067628A1 (en) * | 2007-11-20 | 2009-05-28 | Applied Biosystems Inc. | Reversible di-nucleotide terminator sequencing |
WO2009067632A1 (en) * | 2007-11-20 | 2009-05-28 | Applied Biosystems Inc. | Method of sequencing nucleic acids using elaborated nucleotide phosphorothiolate compounds |
US9551026B2 (en) | 2007-12-03 | 2017-01-24 | Complete Genomincs, Inc. | Method for nucleic acid detection using voltage enhancement |
DK2610351T3 (en) | 2007-12-05 | 2015-09-28 | Complete Genomics Inc | Base efficient provision of sequencing reactions |
US8592150B2 (en) | 2007-12-05 | 2013-11-26 | Complete Genomics, Inc. | Methods and compositions for long fragment read sequencing |
WO2009092035A2 (en) | 2008-01-17 | 2009-07-23 | Sequenom, Inc. | Methods and compositions for the analysis of biological molecules |
US20090270273A1 (en) * | 2008-04-21 | 2009-10-29 | Complete Genomics, Inc. | Array structures for nucleic acid detection |
US8911948B2 (en) * | 2008-04-30 | 2014-12-16 | Integrated Dna Technologies, Inc. | RNase H-based assays utilizing modified RNA monomers |
US9434988B2 (en) | 2008-04-30 | 2016-09-06 | Integrated Dna Technologies, Inc. | RNase H-based assays utilizing modified RNA monomers |
WO2009135093A2 (en) | 2008-04-30 | 2009-11-05 | Integrated Dna Technologies, Inc. | Rnase-h-based assays utilizing modified rna monomers |
US8039817B2 (en) | 2008-05-05 | 2011-10-18 | Illumina, Inc. | Compensator for multiple surface imaging |
EP2294214A2 (en) * | 2008-05-07 | 2011-03-16 | Illumina, Inc. | Compositions and methods for providing substances to and from an array |
EP2626437A3 (en) | 2008-05-14 | 2013-12-11 | Dermtech International | Diagnosis of melanoma and solar lentigo by nucleic acid analysis |
EP2291533B2 (en) | 2008-07-02 | 2020-09-30 | Illumina Cambridge Limited | Using populations of beads for the fabrication of arrays on surfaces |
US20100120034A1 (en) * | 2008-07-03 | 2010-05-13 | Life Technologies Corporation | Methylation analysis of mate pairs |
US8173198B2 (en) * | 2008-07-23 | 2012-05-08 | Life Technologies Corporation | Deposition of metal oxides onto surfaces as an immobilization vehicle for carboxylated or phophated particles or polymers |
US8530156B2 (en) * | 2008-08-08 | 2013-09-10 | President And Fellows Of Harvard College | Chemically cleavable phosphoramidite linkers for sequencing by ligation |
WO2010028288A2 (en) | 2008-09-05 | 2010-03-11 | Aueon, Inc. | Methods for stratifying and annotating cancer drug treatment options |
US8383345B2 (en) | 2008-09-12 | 2013-02-26 | University Of Washington | Sequence tag directed subassembly of short sequencing reads into long sequencing reads |
US8481264B2 (en) * | 2008-09-19 | 2013-07-09 | Pacific Biosciences Of California, Inc. | Immobilized nucleic acid complexes for sequence analysis |
US8921046B2 (en) | 2008-09-19 | 2014-12-30 | Pacific Biosciences Of California, Inc. | Nucleic acid sequence analysis |
US8728764B2 (en) | 2008-10-02 | 2014-05-20 | Illumina Cambridge Limited | Nucleic acid sample enrichment for sequencing applications |
US8541207B2 (en) | 2008-10-22 | 2013-09-24 | Illumina, Inc. | Preservation of information related to genomic DNA methylation |
WO2010062775A2 (en) | 2008-11-03 | 2010-06-03 | The Regents Of The University Of California | Methods for detecting modification resistant nucleic acids |
WO2010068702A2 (en) * | 2008-12-10 | 2010-06-17 | Illumina, Inc. | Methods and compositions for hybridizing nucleic acids |
EP2607496B1 (en) | 2008-12-23 | 2014-07-16 | Illumina, Inc. | Methods useful in nucleic acid sequencing protocols |
CN102333891A (zh) * | 2009-01-20 | 2012-01-25 | 利兰·斯坦福青年大学托管委员会 | 用于药靶诊断、预后和鉴别的单细胞基因表达 |
US8731843B2 (en) * | 2009-02-03 | 2014-05-20 | Complete Genomics, Inc. | Oligomer sequences mapping |
US8738296B2 (en) * | 2009-02-03 | 2014-05-27 | Complete Genomics, Inc. | Indexing a reference sequence for oligomer sequence mapping |
US8615365B2 (en) * | 2009-02-03 | 2013-12-24 | Complete Genomics, Inc. | Oligomer sequences mapping |
US9778188B2 (en) | 2009-03-11 | 2017-10-03 | Industrial Technology Research Institute | Apparatus and method for detection and discrimination molecular object |
GB0907372D0 (en) | 2009-04-29 | 2009-06-10 | Invitrogen Dynal As | Particles |
DK2511843T3 (en) * | 2009-04-29 | 2017-03-27 | Complete Genomics Inc | METHOD AND SYSTEM FOR DETERMINING VARIATIONS IN A SAMPLE POLYNUCLEOTIDE SEQUENCE IN TERMS OF A REFERENCE POLYNUCLEOTIDE SEQUENCE |
CA2760439A1 (en) | 2009-04-30 | 2010-11-04 | Good Start Genetics, Inc. | Methods and compositions for evaluating genetic markers |
US20100279882A1 (en) * | 2009-05-01 | 2010-11-04 | Mostafa Ronaghi | Sequencing methods |
US9524369B2 (en) | 2009-06-15 | 2016-12-20 | Complete Genomics, Inc. | Processing and analysis of complex nucleic acid sequence data |
EP2443236B1 (en) | 2009-06-15 | 2015-05-13 | Complete Genomics, Inc. | Methods and compositions for long fragment read sequencing |
US10036063B2 (en) | 2009-07-24 | 2018-07-31 | Illumina, Inc. | Method for sequencing a polynucleotide template |
MX2012001214A (es) | 2009-07-29 | 2012-06-25 | Pyrobett Pte Ltd | Metodo y aparato para conducir un ensayo. |
EP2669387B1 (en) | 2009-08-25 | 2016-07-20 | Illumina, Inc. | Methods for selecting and amplifying polynucleotides |
US8975019B2 (en) * | 2009-10-19 | 2015-03-10 | University Of Massachusetts | Deducing exon connectivity by RNA-templated DNA ligation/sequencing |
US20110117559A1 (en) * | 2009-11-13 | 2011-05-19 | Integrated Dna Technologies, Inc. | Small rna detection assays |
US9482615B2 (en) * | 2010-03-15 | 2016-11-01 | Industrial Technology Research Institute | Single-molecule detection system and methods |
US8502867B2 (en) | 2010-03-19 | 2013-08-06 | Lightspeed Genomics, Inc. | Synthetic aperture optics imaging method using minimum selective excitation patterns |
US9465228B2 (en) | 2010-03-19 | 2016-10-11 | Optical Biosystems, Inc. | Illumination apparatus optimized for synthetic aperture optics imaging using minimum selective excitation patterns |
WO2011123246A2 (en) | 2010-04-01 | 2011-10-06 | Illumina, Inc. | Solid-phase clonal amplification and related methods |
JP5893607B2 (ja) | 2010-04-05 | 2016-03-23 | プログノシス バイオサイエンシズ インコーポレイテッドPrognosys Biosciences,Inc. | 空間コード化生物学的アッセイ |
US20190300945A1 (en) | 2010-04-05 | 2019-10-03 | Prognosys Biosciences, Inc. | Spatially Encoded Biological Assays |
US10787701B2 (en) | 2010-04-05 | 2020-09-29 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
EP2566984B1 (en) | 2010-05-07 | 2019-04-03 | The Board of Trustees of the Leland Stanford Junior University | Measurement and comparison of immune diversity by high-throughput sequencing |
US9670243B2 (en) | 2010-06-02 | 2017-06-06 | Industrial Technology Research Institute | Compositions and methods for sequencing nucleic acids |
US8865078B2 (en) | 2010-06-11 | 2014-10-21 | Industrial Technology Research Institute | Apparatus for single-molecule detection |
US8865077B2 (en) | 2010-06-11 | 2014-10-21 | Industrial Technology Research Institute | Apparatus for single-molecule detection |
AU2011226792A1 (en) | 2010-06-11 | 2012-01-12 | Life Technologies Corporation | Alternative nucleotide flows in sequencing-by-synthesis methods |
US9029103B2 (en) | 2010-08-27 | 2015-05-12 | Illumina Cambridge Limited | Methods for sequencing polynucleotides |
US9671344B2 (en) | 2010-08-31 | 2017-06-06 | Complete Genomics, Inc. | High-density biochemical array chips with asynchronous tracks for alignment correction by moiré averaging |
AU2011301804B2 (en) | 2010-09-16 | 2015-07-16 | Gen-Probe Incorporated | Capture probes immobilizable via L-nucleotide tail |
US8483969B2 (en) | 2010-09-17 | 2013-07-09 | Illuminia, Inc. | Variation analysis for multiple templates on a solid support |
US9309556B2 (en) | 2010-09-24 | 2016-04-12 | The Board Of Trustees Of The Leland Stanford Junior University | Direct capture, amplification and sequencing of target DNA using immobilized primers |
US8759038B2 (en) | 2010-09-29 | 2014-06-24 | Illumina Cambridge Limited | Compositions and methods for sequencing nucleic acids |
GB201016484D0 (en) | 2010-09-30 | 2010-11-17 | Geneseque As | Method |
US8725422B2 (en) | 2010-10-13 | 2014-05-13 | Complete Genomics, Inc. | Methods for estimating genome-wide copy number variations |
US10233501B2 (en) | 2010-10-19 | 2019-03-19 | Northwestern University | Biomarkers predictive of predisposition to depression and response to treatment |
US20150218639A1 (en) | 2014-01-17 | 2015-08-06 | Northwestern University | Biomarkers predictive of predisposition to depression and response to treatment |
US20150225792A1 (en) | 2014-01-17 | 2015-08-13 | Northwestern University | Compositions and methods for identifying depressive disorders |
US10093981B2 (en) | 2010-10-19 | 2018-10-09 | Northwestern University | Compositions and methods for identifying depressive disorders |
US8753816B2 (en) | 2010-10-26 | 2014-06-17 | Illumina, Inc. | Sequencing methods |
WO2012058459A2 (en) | 2010-10-27 | 2012-05-03 | Life Technologies Corporation | Predictive model for use in sequencing-by-synthesis |
US10273540B2 (en) | 2010-10-27 | 2019-04-30 | Life Technologies Corporation | Methods and apparatuses for estimating parameters in a predictive model for use in sequencing-by-synthesis |
EP3388532B1 (en) | 2010-11-01 | 2021-03-10 | Gen-Probe Incorporated | Integrated capture and amplification of target nucleic acid for sequencing |
US8575071B2 (en) | 2010-11-03 | 2013-11-05 | Illumina, Inc. | Reducing adapter dimer formation |
EP2635679B1 (en) | 2010-11-05 | 2017-04-19 | Illumina, Inc. | Linking sequence reads using paired code tags |
US9074251B2 (en) | 2011-02-10 | 2015-07-07 | Illumina, Inc. | Linking sequence reads using paired code tags |
EP2643484A4 (en) | 2010-11-22 | 2014-04-16 | Univ California | METHOD OF IDENTIFYING AN RNA TRANSCRIPTION OF CELLULAR ORIGIN |
US9163281B2 (en) | 2010-12-23 | 2015-10-20 | Good Start Genetics, Inc. | Methods for maintaining the integrity and identification of a nucleic acid template in a multiplex sequencing reaction |
US9594870B2 (en) | 2010-12-29 | 2017-03-14 | Life Technologies Corporation | Time-warped background signal for sequencing-by-synthesis operations |
WO2012092515A2 (en) | 2010-12-30 | 2012-07-05 | Life Technologies Corporation | Methods, systems, and computer readable media for nucleic acid sequencing |
US20130060482A1 (en) | 2010-12-30 | 2013-03-07 | Life Technologies Corporation | Methods, systems, and computer readable media for making base calls in nucleic acid sequencing |
US10146906B2 (en) | 2010-12-30 | 2018-12-04 | Life Technologies Corporation | Models for analyzing data from sequencing-by-synthesis operations |
EP2663639B1 (en) * | 2011-01-14 | 2017-09-13 | Life Technologies Corporation | Methods for isolation, identification, and quantification of mirnas |
US9217132B2 (en) | 2011-01-20 | 2015-12-22 | Ibis Biosciences, Inc. | Microfluidic transducer |
CN103443338B (zh) | 2011-02-02 | 2017-09-22 | 华盛顿大学商业化中心 | 大规模平行邻接作图 |
CN103842379A (zh) | 2011-03-09 | 2014-06-04 | 细胞信号科技公司 | 用于生成单克隆抗体的方法和试剂 |
US9353411B2 (en) | 2011-03-30 | 2016-05-31 | Parallel Synthesis Technologies | Nucleic acid sequencing technique using a pH-sensing agent |
WO2012138921A1 (en) | 2011-04-08 | 2012-10-11 | Life Technologies Corporation | Phase-protecting reagent flow orderings for use in sequencing-by-synthesis |
GB201106254D0 (en) | 2011-04-13 | 2011-05-25 | Frisen Jonas | Method and product |
CN103748236B (zh) | 2011-04-15 | 2018-12-25 | 约翰·霍普金斯大学 | 安全测序系统 |
CN103502457A (zh) | 2011-05-02 | 2014-01-08 | 先锋国际良种公司 | 用于发现编码杀虫剂的新型核酸分子的细菌信使核糖核酸筛选策略 |
EP2718465B1 (en) | 2011-06-09 | 2022-04-13 | Illumina, Inc. | Method of making an analyte array |
WO2013022778A1 (en) | 2011-08-05 | 2013-02-14 | Ibis Biosciences, Inc. | Nucleic acid sequencing by electrochemical detection |
EP2745108B1 (en) | 2011-08-18 | 2019-06-26 | Life Technologies Corporation | Methods, systems, and computer readable media for making base calls in nucleic acid sequencing |
US10704164B2 (en) | 2011-08-31 | 2020-07-07 | Life Technologies Corporation | Methods, systems, computer readable media, and kits for sample identification |
WO2013049135A1 (en) | 2011-09-26 | 2013-04-04 | Gen-Probe Incorporated | Algorithms for sequence determinations |
US10378051B2 (en) | 2011-09-29 | 2019-08-13 | Illumina Cambridge Limited | Continuous extension and deblocking in reactions for nucleic acids synthesis and sequencing |
US10501791B2 (en) | 2011-10-14 | 2019-12-10 | President And Fellows Of Harvard College | Sequencing by structure assembly |
US9228233B2 (en) | 2011-10-17 | 2016-01-05 | Good Start Genetics, Inc. | Analysis methods |
SG10201510189WA (en) | 2011-10-19 | 2016-01-28 | Nugen Technologies Inc | Compositions And Methods For Directional Nucleic Acid Amplification And Sequencing |
US8778849B2 (en) | 2011-10-28 | 2014-07-15 | Illumina, Inc. | Microarray fabrication system and method |
US10837879B2 (en) | 2011-11-02 | 2020-11-17 | Complete Genomics, Inc. | Treatment for stabilizing nucleic acid arrays |
CA2854023A1 (en) | 2011-11-07 | 2013-05-16 | Illumina, Inc. | Integrated sequencing apparatuses and methods of use |
DK2788499T3 (en) | 2011-12-09 | 2016-03-21 | Illumina Inc | Enhanced root for polymer tags |
EP2795333A4 (en) | 2011-12-20 | 2016-02-17 | Univ Michigan | PSEUDOGENS AND USES THEREOF |
WO2013096838A2 (en) | 2011-12-22 | 2013-06-27 | Ibis Biosciences, Inc. | Systems and methods for isolating nucleic acids |
US11021737B2 (en) | 2011-12-22 | 2021-06-01 | President And Fellows Of Harvard College | Compositions and methods for analyte detection |
US9334491B2 (en) | 2011-12-22 | 2016-05-10 | Ibis Biosciences, Inc. | Systems and methods for isolating nucleic acids from cellular samples |
US10227639B2 (en) | 2011-12-22 | 2019-03-12 | President And Fellows Of Harvard College | Compositions and methods for analyte detection |
US10150993B2 (en) | 2011-12-22 | 2018-12-11 | Ibis Biosciences, Inc. | Macromolecule positioning by electrical potential |
US9823246B2 (en) | 2011-12-28 | 2017-11-21 | The Board Of Trustees Of The Leland Stanford Junior University | Fluorescence enhancing plasmonic nanoscopic gold films and assays based thereon |
US9506113B2 (en) | 2011-12-28 | 2016-11-29 | Ibis Biosciences, Inc. | Nucleic acid ligation systems and methods |
US9803231B2 (en) | 2011-12-29 | 2017-10-31 | Ibis Biosciences, Inc. | Macromolecule delivery to nanowells |
CA2863121A1 (en) | 2011-12-30 | 2013-07-04 | Abbott Molecular Inc. | Microorganism nucleic acid purification from host samples |
AU2013208757A1 (en) | 2012-01-09 | 2014-07-24 | Oslo Universitetssykehus Hf | Methods and biomarkers for analysis of colorectal cancer |
EP2802666B1 (en) | 2012-01-13 | 2018-09-19 | Data2Bio | Genotyping by next-generation sequencing |
WO2013112923A1 (en) | 2012-01-26 | 2013-08-01 | Nugen Technologies, Inc. | Compositions and methods for targeted nucleic acid sequence enrichment and high efficiency library generation |
US9864846B2 (en) | 2012-01-31 | 2018-01-09 | Life Technologies Corporation | Methods and computer program products for compression of sequencing data |
US9515676B2 (en) | 2012-01-31 | 2016-12-06 | Life Technologies Corporation | Methods and computer program products for compression of sequencing data |
AU2013205603B2 (en) | 2012-02-01 | 2016-03-17 | Gen-Probe Incorporated | Asymmetric hairpin target capture oligomers |
WO2013117595A2 (en) | 2012-02-07 | 2013-08-15 | Illumina Cambridge Limited | Targeted enrichment and amplification of nucleic acids on a support |
EP2817627A2 (en) | 2012-02-21 | 2014-12-31 | Oslo Universitetssykehus HF | Methods and biomarkers for detection and prognosis of cervical cancer |
ES2776673T3 (es) | 2012-02-27 | 2020-07-31 | Univ North Carolina Chapel Hill | Métodos y usos para etiquetas moleculares |
CA2866254A1 (en) | 2012-03-06 | 2013-09-12 | Oslo Universitetssykehus Hf | Gene signatures associated with efficacy of postmastectomy radiotherapy in breast cancer |
NO2694769T3 (ja) | 2012-03-06 | 2018-03-03 | ||
US9732387B2 (en) | 2012-04-03 | 2017-08-15 | The Regents Of The University Of Michigan | Biomarker associated with irritable bowel syndrome and Crohn's disease |
US8209130B1 (en) | 2012-04-04 | 2012-06-26 | Good Start Genetics, Inc. | Sequence assembly |
US8812422B2 (en) | 2012-04-09 | 2014-08-19 | Good Start Genetics, Inc. | Variant database |
US20130274148A1 (en) | 2012-04-11 | 2013-10-17 | Illumina, Inc. | Portable genetic detection and analysis system and method |
US9444880B2 (en) | 2012-04-11 | 2016-09-13 | Illumina, Inc. | Cloud computing environment for biological data |
US10227635B2 (en) | 2012-04-16 | 2019-03-12 | Molecular Loop Biosolutions, Llc | Capture reactions |
ES2683979T3 (es) | 2012-05-02 | 2018-10-01 | Ibis Biosciences, Inc. | Secuenciación de ADN |
ES2840456T3 (es) | 2012-05-02 | 2021-07-06 | Ibis Biosciences Inc | Secuenciación de ADN |
US20150133310A1 (en) | 2012-05-02 | 2015-05-14 | Ibis Biosciences, Inc. | Nucleic acid sequencing systems and methods |
EP2844772B1 (en) | 2012-05-02 | 2018-07-11 | Ibis Biosciences, Inc. | Dna sequencing |
CN104428425A (zh) | 2012-05-04 | 2015-03-18 | 考利达基因组股份有限公司 | 测定复杂肿瘤全基因组绝对拷贝数变异的方法 |
US9646132B2 (en) | 2012-05-11 | 2017-05-09 | Life Technologies Corporation | Models for analyzing data from sequencing-by-synthesis operations |
US10233503B2 (en) | 2012-05-24 | 2019-03-19 | Fundació Institut D'investigació Biomèdica De Bellvitge (Idibell) | Method for the identification of the origin of a cancer of unknown primary origin by methylation analysis |
US9914967B2 (en) | 2012-06-05 | 2018-03-13 | President And Fellows Of Harvard College | Spatial sequencing of nucleic acids using DNA origami probes |
US9012022B2 (en) | 2012-06-08 | 2015-04-21 | Illumina, Inc. | Polymer coatings |
US8895249B2 (en) | 2012-06-15 | 2014-11-25 | Illumina, Inc. | Kinetic exclusion amplification of nucleic acid libraries |
EP2861787B1 (en) | 2012-06-18 | 2017-09-20 | Nugen Technologies, Inc. | Compositions and methods for negative selection of non-desired nucleic acid sequences |
WO2014005076A2 (en) | 2012-06-29 | 2014-01-03 | The Regents Of The University Of Michigan | Methods and biomarkers for detection of kidney disorders |
US20150011396A1 (en) | 2012-07-09 | 2015-01-08 | Benjamin G. Schroeder | Methods for creating directional bisulfite-converted nucleic acid libraries for next generation sequencing |
US9092401B2 (en) | 2012-10-31 | 2015-07-28 | Counsyl, Inc. | System and methods for detecting genetic variation |
WO2014015084A2 (en) | 2012-07-17 | 2014-01-23 | Counsyl, Inc. | System and methods for detecting genetic variation |
WO2014015098A1 (en) | 2012-07-18 | 2014-01-23 | Siemens Healthcare Diagnostics Inc. | A method of normalizing biological samples |
US10329608B2 (en) | 2012-10-10 | 2019-06-25 | Life Technologies Corporation | Methods, systems, and computer readable media for repeat sequencing |
AU2013334075B2 (en) | 2012-10-26 | 2018-11-29 | Memorial Sloan-Kettering Cancer Center | Androgen receptor variants and methods for making and using |
WO2014070462A1 (en) | 2012-10-29 | 2014-05-08 | The Johns Hopkins University | Papanicolaou test for ovarian and endometrial cancers |
US9116139B2 (en) | 2012-11-05 | 2015-08-25 | Illumina, Inc. | Sequence scheduling and sample distribution techniques |
WO2014074611A1 (en) | 2012-11-07 | 2014-05-15 | Good Start Genetics, Inc. | Methods and systems for identifying contamination in samples |
EP2746405B1 (en) | 2012-12-23 | 2015-11-04 | HS Diagnomics GmbH | Methods and primer sets for high throughput PCR sequencing |
US9683230B2 (en) | 2013-01-09 | 2017-06-20 | Illumina Cambridge Limited | Sample preparation on a solid support |
US9562269B2 (en) | 2013-01-22 | 2017-02-07 | The Board Of Trustees Of The Leland Stanford Junior University | Haplotying of HLA loci with ultra-deep shotgun sequencing |
US9805407B2 (en) | 2013-01-25 | 2017-10-31 | Illumina, Inc. | Methods and systems for using a cloud computing environment to configure and sell a biological sample preparation cartridge and share related data |
US9512422B2 (en) | 2013-02-26 | 2016-12-06 | Illumina, Inc. | Gel patterned surfaces |
GB2515990B (en) * | 2013-03-06 | 2016-05-04 | Lgc Genomics Ltd | Polymerase chain reaction detection system |
EP2971184B1 (en) | 2013-03-12 | 2019-04-17 | President and Fellows of Harvard College | Method of generating a three-dimensional nucleic acid containing matrix |
CA2905425A1 (en) | 2013-03-13 | 2014-10-02 | Abbott Molecular Inc. | Methods of isolating nucleic acid using a lysis buffer containing ethanol |
AU2013382098B2 (en) | 2013-03-13 | 2019-02-07 | Illumina, Inc. | Methods and compositions for nucleic acid sequencing |
WO2014142841A1 (en) | 2013-03-13 | 2014-09-18 | Illumina, Inc. | Multilayer fluidic devices and methods for their fabrication |
EP2971154A4 (en) | 2013-03-14 | 2017-03-01 | Ibis Biosciences, Inc. | Nucleic acid control panels |
US20140296080A1 (en) | 2013-03-14 | 2014-10-02 | Life Technologies Corporation | Methods, Systems, and Computer Readable Media for Evaluating Variant Likelihood |
CN105378107A (zh) | 2013-03-14 | 2016-03-02 | 雅培分子公司 | 多重甲基化-特异性扩增系统和方法 |
US8778609B1 (en) | 2013-03-14 | 2014-07-15 | Good Start Genetics, Inc. | Methods for analyzing nucleic acids |
GB2584364A (en) | 2013-03-15 | 2020-12-02 | Abvitro Llc | Single cell bar-coding for antibody discovery |
JP6333297B2 (ja) | 2013-03-15 | 2018-05-30 | イルミナ ケンブリッジ リミテッド | 修飾ヌクレオシドまたは修飾ヌクレオチド |
CA2905410A1 (en) | 2013-03-15 | 2014-09-25 | Abbott Molecular Inc. | Systems and methods for detection of genomic copy number changes |
US9193998B2 (en) | 2013-03-15 | 2015-11-24 | Illumina, Inc. | Super resolution imaging |
WO2014150910A1 (en) | 2013-03-15 | 2014-09-25 | Ibis Biosciences, Inc. | Dna sequences to assess contamination in dna sequencing |
WO2014144092A1 (en) | 2013-03-15 | 2014-09-18 | Nugen Technologies, Inc. | Sequential sequencing |
WO2014197377A2 (en) | 2013-06-03 | 2014-12-11 | Good Start Genetics, Inc. | Methods and systems for storing sequence read data |
BR112015030491A8 (pt) | 2013-06-04 | 2022-07-26 | Harvard College | método de modular a expressão de um ácido nucleico alvo em uma célula, bem como método de alterar um ácido nucleico de dna alvo em uma célula |
WO2014201155A1 (en) | 2013-06-11 | 2014-12-18 | Courtagen Life Sciences, Inc. | Methods and kits for treating and classifying individuals at risk of or suffering from trap1 change-of-function |
WO2014210223A1 (en) | 2013-06-25 | 2014-12-31 | Prognosys Biosciences, Inc. | Spatially encoded biological assays using a microfluidic device |
PL3017065T3 (pl) | 2013-07-01 | 2019-03-29 | Illumina, Inc. | Funkcjonalizacja powierzchni i szczepienie polimeru bez użycia katalizatora |
EP3017063B1 (en) | 2013-07-03 | 2017-04-05 | Illumina, Inc. | Sequencing by orthogonal synthesis |
US9926597B2 (en) | 2013-07-26 | 2018-03-27 | Life Technologies Corporation | Control nucleic acid sequences for use in sequencing-by-synthesis and methods for designing the same |
US9898575B2 (en) | 2013-08-21 | 2018-02-20 | Seven Bridges Genomics Inc. | Methods and systems for aligning sequences |
US9116866B2 (en) | 2013-08-21 | 2015-08-25 | Seven Bridges Genomics Inc. | Methods and systems for detecting sequence variants |
CN105637099B (zh) | 2013-08-23 | 2020-05-19 | 深圳华大智造科技有限公司 | 使用短读段的长片段从头组装 |
AU2014312043A1 (en) | 2013-08-30 | 2016-02-25 | Illumina France | Manipulation of droplets on hydrophilic or variegated-hydrophilic surfaces |
US9352315B2 (en) | 2013-09-27 | 2016-05-31 | Taiwan Semiconductor Manufacturing Company, Ltd. | Method to produce chemical pattern in micro-fluidic structure |
US10410739B2 (en) | 2013-10-04 | 2019-09-10 | Life Technologies Corporation | Methods and systems for modeling phasing effects in sequencing using termination chemistry |
ES2885191T3 (es) | 2013-10-17 | 2021-12-13 | Illumina Inc | Métodos y composiciones para preparar bibliotecas de ácidos nucleicos |
CA2927102C (en) | 2013-10-18 | 2022-08-30 | Seven Bridges Genomics Inc. | Methods and systems for genotyping genetic samples |
US11049587B2 (en) | 2013-10-18 | 2021-06-29 | Seven Bridges Genomics Inc. | Methods and systems for aligning sequences in the presence of repeating elements |
WO2015058095A1 (en) | 2013-10-18 | 2015-04-23 | Seven Bridges Genomics Inc. | Methods and systems for quantifying sequence alignment |
WO2015057565A1 (en) | 2013-10-18 | 2015-04-23 | Good Start Genetics, Inc. | Methods for assessing a genomic region of a subject |
US10851414B2 (en) | 2013-10-18 | 2020-12-01 | Good Start Genetics, Inc. | Methods for determining carrier status |
AU2014337093B2 (en) | 2013-10-18 | 2020-07-30 | Seven Bridges Genomics Inc. | Methods and systems for identifying disease-induced mutations |
US9063914B2 (en) | 2013-10-21 | 2015-06-23 | Seven Bridges Genomics Inc. | Systems and methods for transcriptome analysis |
EP3068883B1 (en) | 2013-11-13 | 2020-04-29 | Nugen Technologies, Inc. | Compositions and methods for identification of a duplicate sequencing read |
WO2015084985A2 (en) | 2013-12-03 | 2015-06-11 | Illumina, Inc. | Methods and systems for analyzing image data |
US10597715B2 (en) | 2013-12-05 | 2020-03-24 | Centrillion Technology Holdings | Methods for sequencing nucleic acids |
WO2015085268A1 (en) | 2013-12-05 | 2015-06-11 | Centrillion Technology Holdings Corporation | Modified surfaces |
CN106460032B (zh) | 2013-12-05 | 2019-12-24 | 生捷科技控股公司 | 图案化阵列的制备 |
EP3080268A1 (en) | 2013-12-09 | 2016-10-19 | Illumina, Inc. | Methods and compositions for targeted nucleic acid sequencing |
US9909181B2 (en) | 2013-12-13 | 2018-03-06 | Northwestern University | Biomarkers for post-traumatic stress states |
US10768181B2 (en) | 2013-12-17 | 2020-09-08 | The Brigham And Women's Hospital, Inc. | Detection of an antibody against a pathogen |
DK3083994T3 (da) | 2013-12-20 | 2021-09-13 | Illumina Inc | Bevarelse af genomisk konnektivitetsinformation i fragmenterede genomiske DNA-prøver |
CN106062212A (zh) | 2013-12-23 | 2016-10-26 | 伊鲁米那股份有限公司 | 用于改进光发射检测的结构化基底和关于其的方法 |
US10537889B2 (en) | 2013-12-31 | 2020-01-21 | Illumina, Inc. | Addressable flow cell using patterned electrodes |
US10867693B2 (en) | 2014-01-10 | 2020-12-15 | Seven Bridges Genomics Inc. | Systems and methods for use of known alleles in read mapping |
WO2015107430A2 (en) | 2014-01-16 | 2015-07-23 | Oslo Universitetssykehus Hf | Methods and biomarkers for detection and prognosis of cervical cancer |
US9817944B2 (en) | 2014-02-11 | 2017-11-14 | Seven Bridges Genomics Inc. | Systems and methods for analyzing sequence data |
CN106462337B (zh) | 2014-02-13 | 2019-11-01 | Illumina公司 | 综合式消费者基因组服务 |
RS61976B1 (sr) | 2014-02-18 | 2021-07-30 | Illumina Inc | Postupci i kompozicije za određivanje dnk profila |
US9745614B2 (en) | 2014-02-28 | 2017-08-29 | Nugen Technologies, Inc. | Reduced representation bisulfite sequencing with diversity adaptors |
CN106459869B (zh) | 2014-03-11 | 2020-01-21 | 伊鲁米那股份有限公司 | 一次性的集成微流体盒及其制备和使用的方法 |
US11060139B2 (en) | 2014-03-28 | 2021-07-13 | Centrillion Technology Holdings Corporation | Methods for sequencing nucleic acids |
WO2015175530A1 (en) | 2014-05-12 | 2015-11-19 | Gore Athurva | Methods for detecting aneuploidy |
WO2015175832A1 (en) | 2014-05-16 | 2015-11-19 | Illumina, Inc. | Nucleic acid synthesis techniques |
RU2682546C2 (ru) | 2014-05-27 | 2019-03-19 | Иллумина, Инк. | Системы и способы биохимического анализа, включающие основной прибор и съемный картридж |
US10760109B2 (en) | 2014-06-06 | 2020-09-01 | The Regents Of The University Of Michigan | Compositions and methods for characterizing and diagnosing periodontal disease |
US20150353989A1 (en) | 2014-06-09 | 2015-12-10 | Illumina Cambridge Limited | Sample preparation for nucleic acid amplification |
CA2952058A1 (en) | 2014-06-13 | 2015-12-17 | Illumina Cambridge Limited | Methods and compositions for preparing sequencing libraries |
CN105392902B (zh) | 2014-06-24 | 2021-10-29 | 生物辐射实验室股份有限公司 | 数字式pcr条码化 |
WO2015200833A2 (en) | 2014-06-27 | 2015-12-30 | Abbott Laboratories | COMPOSITIONS AND METHODS FOR DETECTING HUMAN PEGIVIRUS 2 (HPgV-2) |
US10577603B2 (en) | 2014-06-30 | 2020-03-03 | Illumina, Inc. | Methods and compositions using one-sided transposition |
CA2955356C (en) | 2014-07-15 | 2024-01-02 | Illumina, Inc. | Biochemically activated electronic device |
CN106715718B (zh) | 2014-07-24 | 2021-07-06 | 雅培分子公司 | 用于检测和分析结核分枝杆菌的组合物和方法 |
EP3177740B1 (en) | 2014-08-06 | 2021-01-13 | Nugen Technologies, Inc. | Digital measurements from targeted sequencing |
GB201413929D0 (en) | 2014-08-06 | 2014-09-17 | Geneseque As | Method |
GB201414098D0 (en) | 2014-08-08 | 2014-09-24 | Illumina Cambridge Ltd | Modified nucleotide linkers |
EP3180611A4 (en) | 2014-08-12 | 2018-04-25 | NextGen Jane, Inc. | System and method for monitoring health based on collected bodily fluid |
WO2016026924A1 (en) | 2014-08-21 | 2016-02-25 | Illumina Cambridge Limited | Reversible surface functionalization |
WO2016040446A1 (en) | 2014-09-10 | 2016-03-17 | Good Start Genetics, Inc. | Methods for selectively suppressing non-target sequences |
WO2016040602A1 (en) | 2014-09-11 | 2016-03-17 | Epicentre Technologies Corporation | Reduced representation bisulfite sequencing using uracil n-glycosylase (ung) and endonuclease iv |
EP3536786B1 (en) | 2014-09-15 | 2021-06-30 | AbVitro LLC | High-throughput nucleotide library sequencing |
US10550428B2 (en) | 2014-09-17 | 2020-02-04 | Ibis Biosciences, Inc. | Sequencing by synthesis using pulse read optics |
EP3224595A4 (en) | 2014-09-24 | 2018-06-13 | Good Start Genetics, Inc. | Process control for increased robustness of genetic assays |
US10040048B1 (en) | 2014-09-25 | 2018-08-07 | Synthego Corporation | Automated modular system and method for production of biopolymers |
US10676787B2 (en) | 2014-10-13 | 2020-06-09 | Life Technologies Corporation | Methods, systems, and computer-readable media for accelerated base calling |
WO2016060910A1 (en) | 2014-10-14 | 2016-04-21 | Seven Bridges Genomics Inc. | Systems and methods for smart tools in sequence pipelines |
US9897791B2 (en) | 2014-10-16 | 2018-02-20 | Illumina, Inc. | Optical scanning systems for in situ genetic analysis |
RU2709655C2 (ru) | 2014-10-17 | 2019-12-19 | Иллумина Кембридж Лимитед | Транспозиция с сохранением сцепления генов |
CA3002133A1 (en) | 2014-10-17 | 2016-04-21 | Good Start Genetics, Inc. | Pre-implantation genetic screening and aneuploidy detection |
ES2772127T3 (es) | 2014-10-31 | 2020-07-07 | Illumina Cambridge Ltd | Polímeros y recubrimientos de copolímeros de ADN |
US10000799B2 (en) | 2014-11-04 | 2018-06-19 | Boreal Genomics, Inc. | Methods of sequencing with linked fragments |
GB201419731D0 (en) | 2014-11-05 | 2014-12-17 | Illumina Cambridge Ltd | Sequencing from multiple primers to increase data rate and density |
ES2768762T3 (es) | 2014-11-05 | 2020-06-23 | Illumina Cambridge Ltd | Reducción del daño al ADN durante la preparación de muestras y secuenciación usando agentes quelantes sideróforos |
CN111024936A (zh) | 2014-11-05 | 2020-04-17 | 纳迈达斯生物科技中心 | 用于增强成像的金属复合物 |
KR102590448B1 (ko) | 2014-11-11 | 2023-10-17 | 일루미나 케임브리지 리미티드 | 핵산의 모노클로날 클러스터를 형성시키고 시퀀싱하기 위한 방법 및 어레이 |
WO2016081712A1 (en) | 2014-11-19 | 2016-05-26 | Bigdatabio, Llc | Systems and methods for genomic manipulations and analysis |
WO2016112073A1 (en) | 2015-01-06 | 2016-07-14 | Good Start Genetics, Inc. | Screening for structural variants |
US9984201B2 (en) | 2015-01-18 | 2018-05-29 | Youhealth Biotech, Limited | Method and system for determining cancer status |
EP3256604B1 (en) | 2015-02-10 | 2020-03-25 | Illumina, Inc. | Methods and compositions for analyzing cellular components |
US10421993B2 (en) | 2015-02-11 | 2019-09-24 | Paragon Genomics, Inc. | Methods and compositions for reducing non-specific amplification products |
CA2976251C (en) | 2015-02-11 | 2023-08-22 | Paragon Genomics, Inc. | Methods and compositions for reducing non-specific amplification products |
US10208339B2 (en) | 2015-02-19 | 2019-02-19 | Takara Bio Usa, Inc. | Systems and methods for whole genome amplification |
US10641772B2 (en) | 2015-02-20 | 2020-05-05 | Takara Bio Usa, Inc. | Method for rapid accurate dispensing, visualization and analysis of single cells |
WO2016141294A1 (en) | 2015-03-05 | 2016-09-09 | Seven Bridges Genomics Inc. | Systems and methods for genomic pattern analysis |
EP3783109B1 (en) | 2015-03-31 | 2024-05-29 | Illumina Cambridge Limited | Surface concatamerization of templates |
ES2935860T3 (es) | 2015-04-10 | 2023-03-13 | Spatial Transcriptomics Ab | Análisis de ácidos nucleicos múltiplex, espacialmente distinguidos de especímenes biológicos |
EP3696536A1 (en) | 2015-04-14 | 2020-08-19 | Illumina, Inc. | A method of manufacturing a substrate and a method of analyzing biomolecules capable of generating light emissions |
CN113624953A (zh) | 2015-05-11 | 2021-11-09 | 亿明达股份有限公司 | 用于发现和分析治疗剂的平台 |
CN107969138B (zh) | 2015-05-14 | 2022-04-12 | 生命科技公司 | 条形码序列和有关系统与方法 |
US10275567B2 (en) | 2015-05-22 | 2019-04-30 | Seven Bridges Genomics Inc. | Systems and methods for haplotyping |
US10640809B2 (en) | 2015-05-29 | 2020-05-05 | Epicentre Technologies Corporation | Methods of analyzing nucleic acids |
DK3303614T3 (da) | 2015-05-29 | 2020-05-18 | Illumina Cambridge Ltd | Forbedret anvendelse af overfladeprimere i klynger |
EP3103885B1 (en) | 2015-06-09 | 2019-01-30 | Centrillion Technology Holdings Corporation | Methods for sequencing nucleic acids |
EP3878974A1 (en) | 2015-07-06 | 2021-09-15 | Illumina Cambridge Limited | Sample preparation for nucleic acid amplification |
WO2017007753A1 (en) | 2015-07-07 | 2017-01-12 | Illumina, Inc. | Selective surface patterning via nanoimrinting |
ES2902125T3 (es) | 2015-07-14 | 2022-03-25 | Abbott Molecular Inc | Purificación de ácidos nucleicos utilizando óxidos de cobre-titanio u óxidos de magnesio-titanio |
US10526664B2 (en) | 2015-07-14 | 2020-01-07 | Abbott Molecular Inc. | Compositions and methods for identifying drug resistant tuberculosis |
WO2017011660A1 (en) | 2015-07-14 | 2017-01-19 | Personal Genome Diagnostics, Inc. | Neoantigen analysis |
ES2945607T3 (es) | 2015-07-17 | 2023-07-04 | Illumina Inc | Láminas de polímero para aplicaciones de secuenciación |
WO2017015543A1 (en) | 2015-07-23 | 2017-01-26 | Asuragen, Inc. | Methods, compositions, kits, and uses for analysis of nucleic acids comprising repeating a/t-rich segments |
CN116064738A (zh) | 2015-07-27 | 2023-05-05 | 亿明达股份有限公司 | 核酸序列信息的空间定位 |
CN108350500A (zh) | 2015-07-29 | 2018-07-31 | 普罗格尼迪公司 | 用于检测染色体异常的核酸和方法 |
CN107771223B (zh) | 2015-07-30 | 2022-03-22 | 亿明达股份有限公司 | 核苷酸的正交去封闭 |
AU2016301354B2 (en) | 2015-08-06 | 2022-06-30 | Arc Bio, Llc | Systems and methods for genomic analysis |
US11286531B2 (en) | 2015-08-11 | 2022-03-29 | The Johns Hopkins University | Assaying ovarian cyst fluid |
CA2992597C (en) | 2015-08-14 | 2024-03-05 | Illumina, Inc. | Systems and methods using magnetically-responsive sensors for determining a genetic characteristic |
US10793895B2 (en) | 2015-08-24 | 2020-10-06 | Seven Bridges Genomics Inc. | Systems and methods for epigenetic analysis |
US10724110B2 (en) | 2015-09-01 | 2020-07-28 | Seven Bridges Genomics Inc. | Systems and methods for analyzing viral nucleic acids |
US10584380B2 (en) | 2015-09-01 | 2020-03-10 | Seven Bridges Genomics Inc. | Systems and methods for mitochondrial analysis |
US10906044B2 (en) | 2015-09-02 | 2021-02-02 | Illumina Cambridge Limited | Methods of improving droplet operations in fluidic systems with a filler fluid including a surface regenerative silane |
US10450598B2 (en) | 2015-09-11 | 2019-10-22 | Illumina, Inc. | Systems and methods for obtaining a droplet having a designated concentration of a substance-of-interest |
CA2999886A1 (en) | 2015-09-24 | 2017-03-30 | Abvitro Llc | Single amplicon activated exclusion pcr |
AU2016326737B2 (en) | 2015-09-24 | 2023-01-12 | Abvitro Llc | Affinity-oligonucleotide conjugates and uses thereof |
WO2017053902A1 (en) | 2015-09-25 | 2017-03-30 | Abvitro Llc | High throughput process for t cell receptor target identification of natively-paired t cell receptor sequences |
US10577643B2 (en) | 2015-10-07 | 2020-03-03 | Illumina, Inc. | Off-target capture reduction in sequencing techniques |
EP3693459A1 (en) | 2015-10-10 | 2020-08-12 | Guardant Health, Inc. | Methods and applications of gene fusion detection in cell-free dna analysis |
US11347704B2 (en) | 2015-10-16 | 2022-05-31 | Seven Bridges Genomics Inc. | Biological graph or sequence serialization |
WO2017079406A1 (en) | 2015-11-03 | 2017-05-11 | President And Fellows Of Harvard College | Method and apparatus for volumetric imaging of a three-dimensional nucleic acid containing matrix |
US20170298427A1 (en) | 2015-11-16 | 2017-10-19 | Progenity, Inc. | Nucleic acids and methods for detecting methylation status |
AU2016370835B2 (en) | 2015-12-17 | 2020-02-13 | Illumina, Inc. | Distinguishing methylation levels in complex biological samples |
WO2017106768A1 (en) | 2015-12-17 | 2017-06-22 | Guardant Health, Inc. | Methods to determine tumor gene copy number by analysis of cell-free dna |
US20170199960A1 (en) | 2016-01-07 | 2017-07-13 | Seven Bridges Genomics Inc. | Systems and methods for adaptive local alignment for graph genomes |
CN108431223A (zh) | 2016-01-08 | 2018-08-21 | 生物辐射实验室股份有限公司 | 每液滴分辨率下的多个珠 |
US10364468B2 (en) | 2016-01-13 | 2019-07-30 | Seven Bridges Genomics Inc. | Systems and methods for analyzing circulating tumor DNA |
US10460829B2 (en) | 2016-01-26 | 2019-10-29 | Seven Bridges Genomics Inc. | Systems and methods for encoding genetic variation for a population |
US11312991B2 (en) | 2016-01-27 | 2022-04-26 | Kabushiki Kaisha Dnaform | Method for decoding base sequence of nucleic acid corresponding to end region of RNA and method for analyzing DNA element |
US10626390B2 (en) | 2016-02-08 | 2020-04-21 | RGENE, Inc. | Multiple ligase compositions, systems, and methods |
US10262102B2 (en) | 2016-02-24 | 2019-04-16 | Seven Bridges Genomics Inc. | Systems and methods for genotyping with graph reference |
CN109477127A (zh) | 2016-03-14 | 2019-03-15 | R基因股份有限公司 | 超热稳定的赖氨酸-突变型ssDNA/RNA连接酶 |
EP3433373B1 (en) | 2016-03-22 | 2022-01-12 | Myriad Women's Health, Inc. | Combinatorial dna screening |
SG11201805665UA (en) | 2016-03-28 | 2018-10-30 | Illumina Inc | Multi-plane microarrays |
US10961573B2 (en) | 2016-03-28 | 2021-03-30 | Boreal Genomics, Inc. | Linked duplex target capture |
US10961568B2 (en) | 2016-03-28 | 2021-03-30 | Boreal Genomics, Inc. | Linked target capture |
US11326206B2 (en) | 2016-04-07 | 2022-05-10 | Pacific Biosciences Of California, Inc. | Methods of quantifying target nucleic acids and identifying sequence variants |
WO2017180909A1 (en) | 2016-04-13 | 2017-10-19 | Nextgen Jane, Inc. | Sample collection and preservation devices, systems and methods |
CA3022290A1 (en) | 2016-04-25 | 2017-11-02 | President And Fellows Of Harvard College | Hybridization chain reaction methods for in situ molecular detection |
US10619205B2 (en) | 2016-05-06 | 2020-04-14 | Life Technologies Corporation | Combinatorial barcode sequences, and related systems and methods |
US11118233B2 (en) | 2016-05-18 | 2021-09-14 | The University Of Chicago | BTK mutation and ibrutinib resistance |
US10202650B2 (en) | 2016-05-31 | 2019-02-12 | Youhealth Biotech, Limited | Methods for monitoring ELOVL2, KLF14 and PENK gene expression following treatment with vitamin C |
EP4050112A1 (en) | 2016-06-21 | 2022-08-31 | 10X Genomics, Inc. | Nucleic acid sequencing |
WO2018009703A1 (en) | 2016-07-06 | 2018-01-11 | Youhealth Biotech, Limited | Breast and ovarian cancer methylation markers and uses thereof |
CN107847515B (zh) | 2016-07-06 | 2021-01-29 | 优美佳生物技术有限公司 | 实体瘤甲基化标志物及其用途 |
US10093986B2 (en) | 2016-07-06 | 2018-10-09 | Youhealth Biotech, Limited | Leukemia methylation markers and uses thereof |
US11091795B2 (en) | 2016-07-11 | 2021-08-17 | Arizona Board Of Regents On Behalf Of The University Of Arizona | Compositions and methods for diagnosing and treating arrhythmias |
US11460405B2 (en) | 2016-07-21 | 2022-10-04 | Takara Bio Usa, Inc. | Multi-Z imaging and dispensing with multi-well devices |
ES2873723T3 (es) | 2016-07-22 | 2021-11-03 | Univ Oregon Health & Science | Colecciones de genoma completo de células individuales y métodos de indexación combinatoria para prepararlas |
EP3500082A1 (en) | 2016-08-22 | 2019-06-26 | Biolumic Limited | System, device and methods of seed treatment |
WO2018045181A1 (en) | 2016-08-31 | 2018-03-08 | President And Fellows Of Harvard College | Methods of generating libraries of nucleic acid sequences for detection via fluorescent in situ sequencing |
CN109923216A (zh) | 2016-08-31 | 2019-06-21 | 哈佛学院董事及会员团体 | 将生物分子的检测组合到使用荧光原位测序的单个试验的方法 |
US11250931B2 (en) | 2016-09-01 | 2022-02-15 | Seven Bridges Genomics Inc. | Systems and methods for detecting recombination |
US20230207048A1 (en) | 2016-09-22 | 2023-06-29 | Illumina, Inc. | Somatic copy number variation detection |
JP6929354B2 (ja) | 2016-09-24 | 2021-09-01 | アブビトロ, エルエルシー | 親和性−オリゴヌクレオチドコンジュゲートおよびその使用 |
WO2018064311A2 (en) | 2016-09-28 | 2018-04-05 | Life Technologies Corporation | Methods and systems for reducing phasing errors when sequencing nucleic acids using termination chemistry |
US10190155B2 (en) | 2016-10-14 | 2019-01-29 | Nugen Technologies, Inc. | Molecular tag attachment and transfer |
US11725232B2 (en) | 2016-10-31 | 2023-08-15 | The Hong Kong University Of Science And Technology | Compositions, methods and kits for detection of genetic variants for alzheimer's disease |
CN110023509A (zh) | 2016-11-15 | 2019-07-16 | 私人基因诊断公司 | 基因型分型测定中的非独特条形码 |
US11268137B2 (en) | 2016-12-09 | 2022-03-08 | Boreal Genomics, Inc. | Linked ligation |
EP3555290B1 (en) | 2016-12-19 | 2022-11-02 | Bio-Rad Laboratories, Inc. | Droplet tagging contiguity preserved tagmented dna |
GB201704754D0 (en) | 2017-01-05 | 2017-05-10 | Illumina Inc | Kinetic exclusion amplification of nucleic acid libraries |
CN110383386B (zh) | 2017-01-06 | 2023-06-13 | 伊鲁米那股份有限公司 | 移相校正 |
WO2018128544A1 (en) | 2017-01-06 | 2018-07-12 | Agendia N.V. | Biomarkers for selecting patient groups, and uses thereof. |
CN110382716A (zh) | 2017-01-10 | 2019-10-25 | 佰隆基因公司 | 用于减少引物延伸反应中产生的冗余分子条形码的方法和组合物 |
BR112019014042A2 (pt) | 2017-01-17 | 2020-02-04 | Illumina Inc | determinação de variante de splice oncogênica |
SG11201906569XA (en) | 2017-01-20 | 2019-08-27 | Omniome Inc | Genotyping by polymerase binding |
GB201700983D0 (en) | 2017-01-20 | 2017-03-08 | Life Tech As | Polymeric particles |
CA3050241C (en) | 2017-01-20 | 2022-11-29 | Omniome, Inc. | Allele-specific capture of nucleic acids |
GB201701689D0 (en) | 2017-02-01 | 2017-03-15 | Illumia Inc | System and method with fiducials of non-closed shapes |
GB201701686D0 (en) | 2017-02-01 | 2017-03-15 | Illunina Inc | System & method with fiducials having offset layouts |
GB201701688D0 (en) | 2017-02-01 | 2017-03-15 | Illumia Inc | System and method with fiducials in non-recliner layouts |
US20190360051A1 (en) | 2017-02-17 | 2019-11-28 | Stichting Vumc | Swarm intelligence-enhanced diagnosis and therapy selection for cancer using tumor- educated platelets |
US10513739B2 (en) | 2017-03-02 | 2019-12-24 | Youhealth Oncotech, Limited | Methylation markers for diagnosing hepatocellular carcinoma and lung cancer |
WO2018175798A1 (en) | 2017-03-24 | 2018-09-27 | Life Technologies Corporation | Polynucleotide adapters and methods of use thereof |
WO2018187013A1 (en) | 2017-04-04 | 2018-10-11 | Omniome, Inc. | Fluidic apparatus and methods useful for chemical and biological reactions |
CA3059840C (en) | 2017-04-23 | 2022-04-26 | Illumina Cambridge Limited | Compositions and methods for improving sample identification in indexed nucleic acid libraries |
ES2929837T3 (es) | 2017-04-23 | 2022-12-02 | Illumina Cambridge Ltd | Composiciones y métodos para mejorar la identificación de muestras en bibliotecas de ácidos nucleicos indexados |
WO2018197945A1 (en) | 2017-04-23 | 2018-11-01 | Illumina Cambridge Limited | Compositions and methods for improving sample identification in indexed nucleic acid libraries |
SG11201909394PA (en) | 2017-04-23 | 2019-11-28 | Illumina Inc | Compositions and methods for improving sample identification in indexed nucleic acid libraries |
WO2018213803A1 (en) | 2017-05-19 | 2018-11-22 | Neon Therapeutics, Inc. | Immunogenic neoantigen identification |
US20200354784A1 (en) | 2017-05-26 | 2020-11-12 | Abvitro Llc | High-throughput polynucleotide library sequencing and transcriptome analysis |
ES2898250T3 (es) | 2017-06-07 | 2022-03-04 | Univ Oregon Health & Science | Bibliotecas de genoma completo de células individuales para secuenciación de la metilación |
AU2018279728B2 (en) | 2017-06-08 | 2023-07-20 | The Brigham And Women's Hospital, Inc. | Methods and compositions for identifying epitopes |
WO2018236918A1 (en) | 2017-06-20 | 2018-12-27 | Bio-Rad Laboratories, Inc. | MDA USING A BALL OLIGONUCLEOTIDE |
WO2018236631A1 (en) | 2017-06-20 | 2018-12-27 | Illumina, Inc. | METHODS AND COMPOSITIONS FOR RESOLVING INEFFICIENCY IN AMPLIFICATION REACTIONS |
EP3662482A1 (en) | 2017-07-31 | 2020-06-10 | Illumina Inc. | Sequencing system with multiplexed biological sample aggregation |
WO2019023924A1 (en) | 2017-08-01 | 2019-02-07 | Helitec Limited | METHODS FOR ENRICHMENT AND DETERMINATION OF TARGET NUCLEOTIDE SEQUENCES |
CN111108219A (zh) | 2017-08-01 | 2020-05-05 | 伊鲁米纳公司 | 使用的水凝胶珠和流动池的遗传物质的空间索引和文库制备 |
RS64086B1 (sr) | 2017-08-01 | 2023-04-28 | Mgi Tech Co Ltd | Postupak za sekvenciranje nukleinske kiseline |
CN111182972B (zh) | 2017-08-15 | 2022-03-08 | 欧姆尼奥姆股份有限公司 | 用于检测化学和生物分析物的扫描装置和方法 |
WO2019038594A2 (en) | 2017-08-21 | 2019-02-28 | Biolumic Limited | TRANSGENIC PLANTS WITH HIGH GROWTH AND HIGH RUSTICITY |
EP3679370A1 (en) | 2017-09-07 | 2020-07-15 | Juno Therapeutics, Inc. | Methods of identifying cellular attributes related to outcomes associated with cell therapy |
WO2019055829A1 (en) | 2017-09-15 | 2019-03-21 | Nazarian Javad | METHODS OF DETECTION OF CANCER BIOMARKERS |
SG11202002282TA (en) | 2017-09-20 | 2020-04-29 | Regeneron Pharma | Immunotherapy methods for patients whose tumors carry a high passenger gene mutation burden |
CN111787930A (zh) | 2017-10-06 | 2020-10-16 | 芝加哥大学 | 针对癌症特异性抗原对t淋巴细胞的筛选 |
EP3668998A1 (en) | 2017-10-06 | 2020-06-24 | Cartana AB | Rna templated ligation |
US11099202B2 (en) | 2017-10-20 | 2021-08-24 | Tecan Genomics, Inc. | Reagent delivery system |
EP3704247B1 (en) | 2017-11-02 | 2023-01-04 | Bio-Rad Laboratories, Inc. | Transposase-based genomic analysis |
CN110800064B (zh) | 2017-11-06 | 2024-03-29 | 伊鲁米那股份有限公司 | 核酸索引化技术 |
JP6955035B2 (ja) | 2017-11-16 | 2021-10-27 | イルミナ インコーポレイテッド | マイクロサテライト不安定性を決定するためのシステム及び方法 |
EP3714043A4 (en) | 2017-11-22 | 2021-08-11 | The Regents of The University of Michigan | COMPOSITIONS AND METHODS OF TREATMENT OF CANCER |
CN110870016A (zh) | 2017-11-30 | 2020-03-06 | 伊鲁米那股份有限公司 | 用于序列变体呼出的验证方法和系统 |
WO2019136058A1 (en) | 2018-01-02 | 2019-07-11 | The Regents Of The University Of Michigan | Multi-droplet capture |
CN111699531A (zh) | 2018-01-12 | 2020-09-22 | 生命科技股份有限公司 | 通过神经网络进行流空间质量得分预测的方法 |
US11366303B2 (en) | 2018-01-30 | 2022-06-21 | Rebus Biosystems, Inc. | Method for detecting particles using structured illumination |
WO2019152395A1 (en) | 2018-01-31 | 2019-08-08 | Bio-Rad Laboratories, Inc. | Methods and compositions for deconvoluting partition barcodes |
EP3752645A4 (en) | 2018-02-14 | 2022-04-13 | Dermtech, Inc. | NEW GENE CLASSIFIERS AND THEIR USES IN NON-MELANOMA SKIN CANCERS |
EP3775278A1 (en) | 2018-04-02 | 2021-02-17 | Illumina Inc. | Compositions and methods for making controls for sequence-based genetic testing |
EP3553182A1 (en) | 2018-04-11 | 2019-10-16 | Université de Bourgogne | Detection method of somatic genetic anomalies, combination of capture probes and kit of detection |
AU2019255987A1 (en) | 2018-04-19 | 2020-12-10 | Pacific Biosciences Of California, Inc. | Improving accuracy of base calls in nucleic acid sequencing methods |
EP3788377A1 (en) | 2018-05-04 | 2021-03-10 | Abbott Laboratories | Hbv diagnostic, prognostic, and therapeutic methods and products |
RU2744175C1 (ru) | 2018-05-17 | 2021-03-03 | Иллумина, Инк. | Высокопроизводительное секвенирование одиночной клетки со сниженной ошибкой амплификации |
AU2019282158B2 (en) | 2018-06-04 | 2021-08-12 | Illumina, Inc. | High-throughput single-cell transcriptome libraries and methods of making and of using |
WO2020022891A2 (en) | 2018-07-26 | 2020-01-30 | Stichting Vumc | Biomarkers for atrial fibrillation |
SG11202101934SA (en) | 2018-07-30 | 2021-03-30 | Readcoor Llc | Methods and systems for sample processing or analysis |
US11479816B2 (en) | 2018-08-20 | 2022-10-25 | Bio-Rad Laboratories, Inc. | Nucleotide sequence generation by barcode bead-colocalization in partitions |
US11519033B2 (en) | 2018-08-28 | 2022-12-06 | 10X Genomics, Inc. | Method for transposase-mediated spatial tagging and analyzing genomic DNA in a biological sample |
WO2020047005A1 (en) | 2018-08-28 | 2020-03-05 | 10X Genomics, Inc. | Resolving spatial arrays |
CN113286893A (zh) | 2018-08-28 | 2021-08-20 | 10X基因组学股份有限公司 | 生成阵列的方法 |
JP2022503873A (ja) | 2018-10-25 | 2022-01-12 | イルミナ インコーポレイテッド | インデックス及びバーコードを使用してアレイ上のリガンドを識別するための方法及び組成物 |
NL2022043B1 (en) | 2018-11-21 | 2020-06-03 | Akershus Univ Hf | Tagmentation-Associated Multiplex PCR Enrichment Sequencing |
US10710076B2 (en) | 2018-12-04 | 2020-07-14 | Omniome, Inc. | Mixed-phase fluids for nucleic acid sequencing and other analytical assays |
JP2022511207A (ja) | 2018-12-05 | 2022-01-31 | イルミナ ケンブリッジ リミテッド | ブリッジ増幅によるクラスタ生成のための方法および組成物 |
MA54392A (fr) | 2018-12-07 | 2021-10-13 | Octant Inc | Systèmes de criblage d'interactions protéine-protéine |
EP3894585A2 (en) | 2018-12-10 | 2021-10-20 | 10X Genomics, Inc. | Generating capture probes for spatial analysis |
CA3103633A1 (en) | 2018-12-18 | 2020-06-25 | Illumina Cambridge Limited | Methods and compositions for paired end sequencing using a single surface primer |
CA3103527A1 (en) | 2018-12-19 | 2020-06-25 | Illumina, Inc. | Methods for improving polynucleotide cluster clonality priority |
WO2020132350A2 (en) | 2018-12-20 | 2020-06-25 | Omniome, Inc. | Temperature control for analysis of nucleic acids and other analytes |
US11293061B2 (en) | 2018-12-26 | 2022-04-05 | Illumina Cambridge Limited | Sequencing methods using nucleotides with 3′ AOM blocking group |
US11473136B2 (en) | 2019-01-03 | 2022-10-18 | Ncan Genomics, Inc. | Linked target capture |
US20220081714A1 (en) | 2019-01-04 | 2022-03-17 | Northwestern University | Storing temporal data into dna |
US11926867B2 (en) | 2019-01-06 | 2024-03-12 | 10X Genomics, Inc. | Generating capture probes for spatial analysis |
US11649485B2 (en) | 2019-01-06 | 2023-05-16 | 10X Genomics, Inc. | Generating capture probes for spatial analysis |
CA3126148A1 (en) | 2019-01-10 | 2020-07-16 | Travera LLC | Calibration of a functional biomarker instrument |
US11499189B2 (en) | 2019-02-14 | 2022-11-15 | Pacific Biosciences Of California, Inc. | Mitigating adverse impacts of detection systems on nucleic acids and other biological analytes |
WO2020176788A1 (en) | 2019-02-28 | 2020-09-03 | 10X Genomics, Inc. | Profiling of biological analytes with spatially barcoded oligonucleotide arrays |
JP2022522917A (ja) | 2019-03-01 | 2022-04-21 | イルミナ インコーポレイテッド | ハイスループット単一核及び単一細胞ライブラリー、並びに製造及び使用方法 |
WO2020190509A1 (en) | 2019-03-15 | 2020-09-24 | 10X Genomics, Inc. | Methods for using spatial arrays for single cell sequencing |
WO2020198071A1 (en) | 2019-03-22 | 2020-10-01 | 10X Genomics, Inc. | Three-dimensional spatial analysis |
AU2020247911A1 (en) | 2019-03-26 | 2021-11-11 | Dermtech, Inc. | Novel gene classifiers and uses thereof in skin cancers |
EP3947718A4 (en) | 2019-04-02 | 2022-12-21 | Enumera Molecular, Inc. | METHODS, SYSTEMS AND COMPOSITIONS FOR COUNTING NUCLEIC ACID MOLECULES |
JP2022536257A (ja) | 2019-05-28 | 2022-08-15 | オクタント,インク. | 転写リレー系 |
WO2020243579A1 (en) | 2019-05-30 | 2020-12-03 | 10X Genomics, Inc. | Methods of detecting spatial heterogeneity of a biological sample |
EP3976817A1 (en) | 2019-05-31 | 2022-04-06 | 10X Genomics, Inc. | Method of detecting target nucleic acid molecules |
WO2020252186A1 (en) | 2019-06-11 | 2020-12-17 | Omniome, Inc. | Calibrated focus sensing |
US10656368B1 (en) | 2019-07-24 | 2020-05-19 | Omniome, Inc. | Method and system for biological imaging using a wide field objective lens |
WO2021050681A1 (en) | 2019-09-10 | 2021-03-18 | Omniome, Inc. | Reversible modification of nucleotides |
CA3142535A1 (en) | 2019-09-20 | 2021-03-25 | Illumina, Inc. | Methods and compositions for identifying ligands on arrays using indexes and barcodes |
US11514575B2 (en) | 2019-10-01 | 2022-11-29 | 10X Genomics, Inc. | Systems and methods for identifying morphological patterns in tissue samples |
WO2021072306A1 (en) | 2019-10-10 | 2021-04-15 | 1859, Inc. | Methods and systems for microfluidic screening |
EP4045683A1 (en) | 2019-10-18 | 2022-08-24 | Omniome, Inc. | Methods and compositions for capping nucleic acids |
EP4055185A1 (en) | 2019-11-08 | 2022-09-14 | 10X Genomics, Inc. | Spatially-tagged analyte capture agents for analyte multiplexing |
EP4025711A2 (en) | 2019-11-08 | 2022-07-13 | 10X Genomics, Inc. | Enhancing specificity of analyte binding |
CN117078725A (zh) | 2019-11-21 | 2023-11-17 | 10X基因组学有限公司 | 分析物的空间分析 |
DE202019106695U1 (de) | 2019-12-02 | 2020-03-19 | Omniome, Inc. | System zur Sequenzierung von Nukleinsäuren in Fluidschaum |
DE202019106694U1 (de) | 2019-12-02 | 2020-03-19 | Omniome, Inc. | System zur Sequenzierung von Nukleinsäuren in Fluidschaum |
WO2021118349A1 (en) | 2019-12-10 | 2021-06-17 | Prinses Máxima Centrum Voor Kinderoncologie B.V. | Methods of typing germ cell tumors |
CA3134746A1 (en) | 2019-12-19 | 2021-06-24 | Illumina, Inc. | High-throughput single-cell libraries and methods of making and of using |
FI3891300T3 (fi) | 2019-12-23 | 2023-05-10 | 10X Genomics Inc | Menetelmät spatiaalista analyysiä varten rna-templatoitua ligaatiota käyttäen |
CA3165571C (en) | 2019-12-23 | 2023-02-07 | Singular Genomics Systems, Inc. | Methods for long read sequencing |
WO2021146184A1 (en) | 2020-01-13 | 2021-07-22 | Fluent Biosciences Inc. | Single cell sequencing |
US11732299B2 (en) | 2020-01-21 | 2023-08-22 | 10X Genomics, Inc. | Spatial assays with perturbed cells |
US11702693B2 (en) | 2020-01-21 | 2023-07-18 | 10X Genomics, Inc. | Methods for printing cells and generating arrays of barcoded cells |
US11821035B1 (en) | 2020-01-29 | 2023-11-21 | 10X Genomics, Inc. | Compositions and methods of making gene expression libraries |
WO2021152586A1 (en) | 2020-01-30 | 2021-08-05 | Yeda Research And Development Co. Ltd. | Methods of analyzing microbiome, immunoglobulin profile and physiological state |
US11898205B2 (en) | 2020-02-03 | 2024-02-13 | 10X Genomics, Inc. | Increasing capture efficiency of spatial assays |
US20230054204A1 (en) | 2020-02-04 | 2023-02-23 | Pacific Biosciences Of California, Inc. | Flow cells and methods for their manufacture and use |
US11732300B2 (en) | 2020-02-05 | 2023-08-22 | 10X Genomics, Inc. | Increasing efficiency of spatial analysis in a biological sample |
US11835462B2 (en) | 2020-02-11 | 2023-12-05 | 10X Genomics, Inc. | Methods and compositions for partitioning a biological sample |
WO2021163637A1 (en) | 2020-02-13 | 2021-08-19 | Zymergen Inc. | Metagenomic library and natural product discovery platform |
CN115485391A (zh) | 2020-02-17 | 2022-12-16 | 10X基因组学有限公司 | 染色质相互作用的原位分析 |
CN115698324A (zh) | 2020-02-21 | 2023-02-03 | 10X基因组学有限公司 | 用于整合原位空间测定的方法和组合物 |
US11891654B2 (en) | 2020-02-24 | 2024-02-06 | 10X Genomics, Inc. | Methods of making gene expression libraries |
US11926863B1 (en) | 2020-02-27 | 2024-03-12 | 10X Genomics, Inc. | Solid state single cell method for analyzing fixed biological cells |
WO2021178467A1 (en) | 2020-03-03 | 2021-09-10 | Omniome, Inc. | Methods and compositions for sequencing double stranded nucleic acids |
US11768175B1 (en) | 2020-03-04 | 2023-09-26 | 10X Genomics, Inc. | Electrophoretic methods for spatial analysis |
EP4114978A4 (en) | 2020-03-06 | 2024-07-03 | Singular Genomics Systems Inc | SEQUENCING OF LINKED PAIRED STRANDS |
WO2021188500A1 (en) | 2020-03-16 | 2021-09-23 | Fluent Biosciences Inc. | Multi-omic analysis in monodisperse droplets |
WO2021214766A1 (en) | 2020-04-21 | 2021-10-28 | Yeda Research And Development Co. Ltd. | Methods of diagnosing viral infections and vaccines thereto |
ES2965354T3 (es) | 2020-04-22 | 2024-04-12 | 10X Genomics Inc | Métodos para análisis espacial que usan eliminación de ARN elegido como diana |
US20230330223A1 (en) | 2020-04-27 | 2023-10-19 | Agendia N.V. | Treatment of her2 negative, mammaprint high risk 2 breast cancer |
US20230203592A1 (en) | 2020-05-05 | 2023-06-29 | Akershus Universitetssykehus Hf | Compositions and methods for characterizing bowel cancer |
IL297921A (en) | 2020-05-08 | 2023-01-01 | Illumina Inc | Genome sequencing and detection techniques |
EP4150065A2 (en) | 2020-05-12 | 2023-03-22 | Illumina Inc | Generating nucleic acids with modified bases using recombinant terminal deoxynucleotidyl transferase |
US10941453B1 (en) | 2020-05-20 | 2021-03-09 | Paragon Genomics, Inc. | High throughput detection of pathogen RNA in clinical specimens |
EP4153775A1 (en) | 2020-05-22 | 2023-03-29 | 10X Genomics, Inc. | Simultaneous spatio-temporal measurement of gene expression and cellular activity |
AU2021275906A1 (en) | 2020-05-22 | 2022-12-22 | 10X Genomics, Inc. | Spatial analysis to detect sequence variants |
WO2021242834A1 (en) | 2020-05-26 | 2021-12-02 | 10X Genomics, Inc. | Method for resetting an array |
WO2021237292A1 (en) | 2020-05-27 | 2021-12-02 | Genetic Technologies Limited | Methods of assessing risk of developing a severe response to coronavirus infection |
CN116249785A (zh) | 2020-06-02 | 2023-06-09 | 10X基因组学有限公司 | 用于抗原-受体的空间转录组学 |
EP4025692A2 (en) | 2020-06-02 | 2022-07-13 | 10X Genomics, Inc. | Nucleic acid library methods |
EP4162074B1 (en) | 2020-06-08 | 2024-04-24 | 10X Genomics, Inc. | Methods of determining a surgical margin and methods of use thereof |
WO2021252617A1 (en) | 2020-06-09 | 2021-12-16 | Illumina, Inc. | Methods for increasing yield of sequencing libraries |
WO2021252591A1 (en) | 2020-06-10 | 2021-12-16 | 10X Genomics, Inc. | Methods for determining a location of an analyte in a biological sample |
PE20230492A1 (es) | 2020-06-22 | 2023-03-23 | Illumina Cambridge Ltd | Nucleosidos y nucleotidos con grupo de bloqueo de acetal 3' |
CN116034166A (zh) | 2020-06-25 | 2023-04-28 | 10X基因组学有限公司 | Dna甲基化的空间分析 |
US11981960B1 (en) | 2020-07-06 | 2024-05-14 | 10X Genomics, Inc. | Spatial analysis utilizing degradable hydrogels |
US11761038B1 (en) | 2020-07-06 | 2023-09-19 | 10X Genomics, Inc. | Methods for identifying a location of an RNA in a biological sample |
JP2023532905A (ja) | 2020-07-08 | 2023-08-01 | イルミナ インコーポレイテッド | トランスポソーム担体としてのビーズ |
EP4153606A2 (en) | 2020-07-13 | 2023-03-29 | Singular Genomics Systems, Inc. | Methods of sequencing complementary polynucleotides |
US20220042109A1 (en) | 2020-08-06 | 2022-02-10 | Agendia NV | Methods of assessing breast cancer using circulating hormone receptor transcripts |
US20220042107A1 (en) | 2020-08-06 | 2022-02-10 | Agendia NV | Systems and methods of scoring risk and residual disease from passenger mutations |
WO2022029488A1 (en) | 2020-08-06 | 2022-02-10 | Agenda Nv | Systems and methods of assessing breast cancer |
US20220042106A1 (en) | 2020-08-06 | 2022-02-10 | Agendia NV | Systems and methods of using cell-free nucleic acids to tailor cancer treatment |
US11981958B1 (en) | 2020-08-20 | 2024-05-14 | 10X Genomics, Inc. | Methods for spatial analysis using DNA capture |
US20230279382A1 (en) * | 2022-03-04 | 2023-09-07 | Element Biosciences, Inc. | Single-stranded splint strands and methods of use |
US11926822B1 (en) | 2020-09-23 | 2024-03-12 | 10X Genomics, Inc. | Three-dimensional spatial analysis |
US11827935B1 (en) | 2020-11-19 | 2023-11-28 | 10X Genomics, Inc. | Methods for spatial analysis using rolling circle amplification and detection probes |
US20220170010A1 (en) | 2020-12-02 | 2022-06-02 | Illumina Software, Inc. | System and method for detection of genetic alterations |
EP4012046A1 (en) | 2020-12-11 | 2022-06-15 | 10X Genomics, Inc. | Methods and compositions for multimodal in situ analysis |
WO2022140028A1 (en) | 2020-12-21 | 2022-06-30 | 10X Genomics, Inc. | Methods, compositions, and systems for capturing probes and/or barcodes |
US20220228200A1 (en) | 2021-01-19 | 2022-07-21 | 10X Genomics, Inc. | Methods and compositions for internally controlled in situ assays |
EP4284945A1 (en) | 2021-01-26 | 2023-12-06 | 10X Genomics, Inc. | Nucleic acid analog probes for in situ analysis |
US11486001B2 (en) | 2021-02-08 | 2022-11-01 | Singular Genomics Systems, Inc. | Methods and compositions for sequencing complementary polynucleotides |
WO2022174054A1 (en) | 2021-02-13 | 2022-08-18 | The General Hospital Corporation | Methods and compositions for in situ macromolecule detection and uses thereof |
EP4301873A1 (en) | 2021-03-03 | 2024-01-10 | 10X Genomics, Inc. | Analyte detection in situ using nucleic acid origami |
EP4263868A1 (en) | 2021-03-12 | 2023-10-25 | Singular Genomics Systems, Inc. | Nanoarrays and methods of use thereof |
US11884977B2 (en) | 2021-03-12 | 2024-01-30 | Singular Genomics Systems, Inc. | Nanoarrays and methods of use thereof |
EP4301870A1 (en) | 2021-03-18 | 2024-01-10 | 10X Genomics, Inc. | Multiplex capture of gene and protein expression from a biological sample |
AU2022245985A1 (en) | 2021-03-22 | 2023-09-21 | Illumina Cambridge Limited | Methods for improving nucleic acid cluster clonality |
MX2023011660A (es) | 2021-03-31 | 2023-12-11 | Illumina Cambridge Ltd | Tecnicas de secuenciacion de genoteca de acido nucleico con deteccion de dimero adaptador. |
WO2022208171A1 (en) | 2021-03-31 | 2022-10-06 | UCL Business Ltd. | Methods for analyte detection |
CA3214148A1 (en) | 2021-04-02 | 2022-10-06 | Brandon Tyler WESTERBERG | Machine-learning model for detecting a bubble within a nucleotide-sample slide for sequencing |
US11578320B2 (en) | 2021-04-27 | 2023-02-14 | Singular Genomics Systems, Inc. | High density sequencing and multiplexed priming |
JP2024522025A (ja) | 2021-04-29 | 2024-06-10 | イルミナ インコーポレイテッド | 核酸特性評価のための増幅手法 |
EP4334475A1 (en) | 2021-05-07 | 2024-03-13 | Agendia N.V. | Endocrine treatment of hormone receptor positive breast cancer typed as having a low risk of recurrence |
IL308173A (en) | 2021-05-20 | 2024-01-01 | Illumina Inc | Compositions and methods for genetic sequencing by synthesis |
EP4347877A1 (en) | 2021-06-01 | 2024-04-10 | 10X Genomics, Inc. | Methods and compositions for analyte detection and probe resolution |
US20230084407A1 (en) | 2021-06-02 | 2023-03-16 | 10X Genomics, Inc. | Sample analysis using asymmetric circularizable probes |
US20220403450A1 (en) | 2021-06-03 | 2022-12-22 | Illumina Software, Inc. | Systems and methods for sequencing nucleotides using two optical channels |
US20220415442A1 (en) | 2021-06-29 | 2022-12-29 | Illumina Software, Inc. | Signal-to-noise-ratio metric for determining nucleotide-base calls and base-call quality |
WO2023278966A1 (en) | 2021-06-29 | 2023-01-05 | Illumina, Inc. | Machine-learning model for generating confidence classifications for genomic coordinates |
EP4370896A1 (en) | 2021-07-13 | 2024-05-22 | 10X Genomics, Inc. | Methods for preparing polymerized matrix with controllable thickness |
US20230021577A1 (en) | 2021-07-23 | 2023-01-26 | Illumina Software, Inc. | Machine-learning model for recalibrating nucleotide-base calls |
US20230057571A1 (en) | 2021-08-03 | 2023-02-23 | 10X Genomics, Inc. | Nucleic acid concatemers and methods for stabilizing and/or compacting the same |
US20230061542A1 (en) | 2021-08-16 | 2023-03-02 | 10X Genomics, Inc. | Probes comprising a split barcode region and methods of use |
WO2023023500A1 (en) | 2021-08-17 | 2023-02-23 | Illumina, Inc. | Methods and compositions for identifying methylated cytosines |
EP4196605A1 (en) | 2021-09-01 | 2023-06-21 | 10X Genomics, Inc. | Methods, compositions, and kits for blocking a capture probe on a spatial array |
CN117580961A (zh) | 2021-09-01 | 2024-02-20 | Illumina公司 | 用于加速碱基判读的幅度调制 |
WO2023044229A1 (en) | 2021-09-17 | 2023-03-23 | Illumina, Inc. | Automatically identifying failure sources in nucleotide sequencing from base-call-error patterns |
WO2023049558A1 (en) | 2021-09-21 | 2023-03-30 | Illumina, Inc. | A graph reference genome and base-calling approach using imputed haplotypes |
WO2023085932A1 (en) | 2021-11-10 | 2023-05-19 | Omnigen B.V. | Prediction of response following folfirinox treatment in cancer patients |
EP4305195A2 (en) | 2021-12-01 | 2024-01-17 | 10X Genomics, Inc. | Methods, compositions, and systems for improved in situ detection of analytes and spatial analysis |
CN117581303A (zh) | 2021-12-02 | 2024-02-20 | 因美纳有限公司 | 产生用于确定核苷酸碱基检出的簇特异性信号校正 |
CA3223595A1 (en) | 2021-12-16 | 2023-06-22 | Xiaoyu Ma | Hybrid clustering |
US20230215515A1 (en) | 2021-12-23 | 2023-07-06 | Illumina Software, Inc. | Facilitating secure execution of external workflows for genomic sequencing diagnostics |
WO2023122363A1 (en) | 2021-12-23 | 2023-06-29 | Illumina Software, Inc. | Dynamic graphical status summaries for nucelotide sequencing |
US20230242974A1 (en) | 2021-12-27 | 2023-08-03 | 10X Genomics, Inc. | Methods and compositions for rolling circle amplification |
US20230207050A1 (en) | 2021-12-28 | 2023-06-29 | Illumina Software, Inc. | Machine learning model for recalibrating nucleotide base calls corresponding to target variants |
WO2023129764A1 (en) | 2021-12-29 | 2023-07-06 | Illumina Software, Inc. | Automatically switching variant analysis model versions for genomic analysis applications |
WO2023126457A1 (en) | 2021-12-29 | 2023-07-06 | Illumina Cambridge Ltd. | Methods of nucleic acid sequencing using surface-bound primers |
WO2023135485A1 (en) | 2022-01-13 | 2023-07-20 | Oslo Universitetssykehus Hf | Prostate cancer markers and uses thereof |
WO2023141154A1 (en) | 2022-01-20 | 2023-07-27 | Illumina Cambridge Limited | Methods of detecting methylcytosine and hydroxymethylcytosine by sequencing |
US20230279475A1 (en) | 2022-01-21 | 2023-09-07 | 10X Genomics, Inc. | Multiple readout signals for analyzing a sample |
WO2023152568A2 (en) | 2022-02-10 | 2023-08-17 | Oslo Universitetssykehus Hf | Compositions and methods for characterizing lung cancer |
WO2023164660A1 (en) | 2022-02-25 | 2023-08-31 | Illumina, Inc. | Calibration sequences for nucelotide sequencing |
US20230313271A1 (en) | 2022-02-25 | 2023-10-05 | Illumina, Inc. | Machine-learning models for detecting and adjusting values for nucleotide methylation levels |
US11639499B1 (en) | 2022-03-08 | 2023-05-02 | Watchmaker Genomics, Inc. | Reverse transcriptase variants |
US11795505B2 (en) | 2022-03-10 | 2023-10-24 | Singular Genomics Systems, Inc. | Nucleic acid delivery scaffolds |
AU2023233839A1 (en) | 2022-03-15 | 2024-01-18 | Illumina, Inc. | Concurrent sequencing of forward and reverse complement strands on concatenated polynucleotides for methylation detection |
WO2023175042A1 (en) | 2022-03-15 | 2023-09-21 | Illumina, Inc. | Parallel sample and index sequencing |
US20230348973A1 (en) | 2022-03-31 | 2023-11-02 | Illumina Cambridge Limited | Paired-end re-synthesis using blocked p5 primers |
WO2023192616A1 (en) | 2022-04-01 | 2023-10-05 | 10X Genomics, Inc. | Compositions and methods for targeted masking of autofluorescence |
WO2023196526A1 (en) | 2022-04-06 | 2023-10-12 | 10X Genomics, Inc. | Methods for multiplex cell analysis |
WO2023196572A1 (en) | 2022-04-07 | 2023-10-12 | Illumina Singapore Pte. Ltd. | Altered cytidine deaminases and methods of use |
AU2023250540A1 (en) | 2022-04-08 | 2024-01-18 | Illumina, Inc. | Aptamer dynamic range compression and detection techniques |
US11680293B1 (en) | 2022-04-21 | 2023-06-20 | Paragon Genomics, Inc. | Methods and compositions for amplifying DNA and generating DNA sequencing results from target-enriched DNA molecules |
WO2023212601A1 (en) | 2022-04-26 | 2023-11-02 | Illumina, Inc. | Machine-learning models for selecting oligonucleotide probes for array technologies |
US20240002902A1 (en) | 2022-05-06 | 2024-01-04 | 10X Genomics, Inc. | Analysis of antigen and antigen receptor interactions |
WO2023220627A1 (en) | 2022-05-10 | 2023-11-16 | Illumina Software, Inc. | Adaptive neural network for nucelotide sequencing |
WO2023225095A1 (en) | 2022-05-18 | 2023-11-23 | Illumina Cambridge Limited | Preparation of size-controlled nucleic acid fragments |
WO2023224488A1 (en) | 2022-05-19 | 2023-11-23 | Agendia N.V. | Dna repair signature and prediction of response following cancer therapy |
WO2023224487A1 (en) | 2022-05-19 | 2023-11-23 | Agendia N.V. | Prediction of response to immune therapy in breast cancer patients |
WO2023245190A1 (en) | 2022-06-17 | 2023-12-21 | 10X Genomics, Inc. | Catalytic de-crosslinking of samples for in situ analysis |
WO2023250504A1 (en) | 2022-06-24 | 2023-12-28 | Illumina Software, Inc. | Improving split-read alignment by intelligently identifying and scoring candidate split groups |
WO2024006779A1 (en) | 2022-06-27 | 2024-01-04 | Illumina, Inc. | Accelerators for a genotype imputation model |
WO2024006769A1 (en) | 2022-06-27 | 2024-01-04 | Illumina Software, Inc. | Generating and implementing a structural variation graph genome |
WO2024006705A1 (en) | 2022-06-27 | 2024-01-04 | Illumina Software, Inc. | Improved human leukocyte antigen (hla) genotyping |
WO2024015962A1 (en) | 2022-07-15 | 2024-01-18 | Pacific Biosciences Of California, Inc. | Blocked asymmetric hairpin adaptors |
US20240038327A1 (en) | 2022-07-26 | 2024-02-01 | Illumina Software, Inc. | Rapid single-cell multiomics processing using an executable file |
US20240101978A1 (en) | 2022-08-12 | 2024-03-28 | 10X Genomics, Inc. | Puma1 polymerases and uses thereof |
WO2024040060A1 (en) | 2022-08-16 | 2024-02-22 | 10X Genomics, Inc. | Ap50 polymerases and uses thereof |
WO2024039516A1 (en) | 2022-08-19 | 2024-02-22 | Illumina, Inc. | Third dna base pair site-specific dna detection |
WO2024061799A1 (en) | 2022-09-19 | 2024-03-28 | Illumina, Inc. | Deformable polymers comprising immobilised primers |
US20240102067A1 (en) | 2022-09-26 | 2024-03-28 | Illumina, Inc. | Resynthesis Kits and Methods |
US20240112753A1 (en) | 2022-09-29 | 2024-04-04 | Illumina, Inc. | Target-variant-reference panel for imputing target variants |
US20240110234A1 (en) | 2022-09-30 | 2024-04-04 | Illumina, Inc. | Amplification Compositions and Methods |
WO2024069581A1 (en) | 2022-09-30 | 2024-04-04 | Illumina Singapore Pte. Ltd. | Helicase-cytidine deaminase complexes and methods of use |
WO2024073047A1 (en) | 2022-09-30 | 2024-04-04 | Illumina, Inc. | Cytidine deaminases and methods of use in mapping modified cytosine nucleotides |
WO2024073043A1 (en) | 2022-09-30 | 2024-04-04 | Illumina, Inc. | Methods of using cpg binding proteins in mapping modified cytosine nucleotides |
US20240110221A1 (en) | 2022-09-30 | 2024-04-04 | Illumina, Inc. | Methods of modulating clustering kinetics |
US20240124914A1 (en) | 2022-09-30 | 2024-04-18 | Illumina, Inc. | Thermophilic compositions for nucleic acid amplification |
US20240124929A1 (en) | 2022-09-30 | 2024-04-18 | Illumina, Inc. | Mesophilic compositions for nucleic acid amplification |
WO2024073519A1 (en) | 2022-09-30 | 2024-04-04 | Illumina, Inc. | Machine-learning model for refining structural variant calls |
WO2024077096A1 (en) | 2022-10-05 | 2024-04-11 | Illumina, Inc. | Integrating variant calls from multiple sequencing pipelines utilizing a machine learning architecture |
US20240127906A1 (en) | 2022-10-11 | 2024-04-18 | Illumina, Inc. | Detecting and correcting methylation values from methylation sequencing assays |
US20240191297A1 (en) | 2022-10-14 | 2024-06-13 | 10X Genomics, Inc. | Methods, compositions, and systems for assessing biological sample quality |
WO2024102736A1 (en) | 2022-11-08 | 2024-05-16 | 10X Genomics, Inc. | Immobilization methods and compositions for in situ detection |
US20240158852A1 (en) | 2022-11-16 | 2024-05-16 | 10X Genomics, Inc. | Methods and compositions for assessing performance of in situ assays |
WO2024118791A1 (en) | 2022-11-30 | 2024-06-06 | Illumina, Inc. | Accurately predicting variants from methylation sequencing data |
US20240209429A1 (en) | 2022-12-07 | 2024-06-27 | Illumina, Inc. | Monoclonal clustering using double stranded dna size exclusion with patterned seeding |
WO2024129672A1 (en) | 2022-12-12 | 2024-06-20 | The Broad Institute, Inc. | Trafficked rnas for assessment of cell-cell connectivity and neuroanatomy |
US20240209419A1 (en) | 2022-12-14 | 2024-06-27 | Illumina, Inc. | Systems and Methods for Capture and Enrichment of Clustered Beads on Flow Cell Substrates |
WO2024130203A1 (en) | 2022-12-16 | 2024-06-20 | 10X Genomics, Inc. | Methods and compositions for assessing performance |
Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO1994003630A2 (en) * | 1992-08-04 | 1994-02-17 | Beckman Instruments, Inc. | Method, reagent and kit for the detection and amplification of nucleic acid sequences |
WO1994016101A2 (en) * | 1993-01-07 | 1994-07-21 | Koester Hubert | Dna sequencing by mass spectrometry |
US5403708A (en) * | 1992-07-06 | 1995-04-04 | Brennan; Thomas M. | Methods and compositions for determining the sequence of nucleic acids |
Family Cites Families (59)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
DE2122529A1 (de) * | 1971-05-06 | 1972-12-14 | Max Planck Gesellschaft zur Förde rung der Wissenschaften e V , 3400 Gottin gen | Thiophosphatanaloge der Nucleosid di und tnphosphate sowie Verfahren zu ihrer Herstellung |
US4123610A (en) | 1977-03-09 | 1978-10-31 | The United States Government | Nucleic acid crosslinking agent and affinity inactivation of nucleic acids therewith |
US4362876A (en) * | 1978-08-11 | 1982-12-07 | The Sherwin-Williams Company | Preparation of dihydroxyquinoline and certain derivatives |
US4458066A (en) | 1980-02-29 | 1984-07-03 | University Patents, Inc. | Process for preparing polynucleotides |
US4973679A (en) | 1981-03-27 | 1990-11-27 | University Patents, Inc. | Process for oligonucleo tide synthesis using phosphormidite intermediates |
US4415732A (en) | 1981-03-27 | 1983-11-15 | University Patents, Inc. | Phosphoramidite compounds and processes |
DE3301833A1 (de) | 1983-01-20 | 1984-07-26 | Gesellschaft für Biotechnologische Forschung mbH (GBF), 3300 Braunschweig | Verfahren zur simultanen synthese mehrerer oligonocleotide an fester phase |
US4661450A (en) * | 1983-05-03 | 1987-04-28 | Molecular Genetics Research And Development Limited Partnership | Molecular cloning of RNA using RNA ligase and synthetic oligonucleotides |
DE3329892A1 (de) | 1983-08-18 | 1985-03-07 | Köster, Hubert, Prof. Dr., 2000 Hamburg | Verfahren zur herstellung von oligonucleotiden |
US5118605A (en) * | 1984-10-16 | 1992-06-02 | Chiron Corporation | Polynucleotide determination with selectable cleavage sites |
US5367066A (en) * | 1984-10-16 | 1994-11-22 | Chiron Corporation | Oligonucleotides with selectably cleavable and/or abasic sites |
US4734363A (en) | 1984-11-27 | 1988-03-29 | Molecular Diagnostics, Inc. | Large scale production of DNA probes |
US4757141A (en) | 1985-08-26 | 1988-07-12 | Applied Biosystems, Incorporated | Amino-derivatized phosphite and phosphate linking agents, phosphoramidite precursors, and useful conjugates thereof |
US5011769A (en) | 1985-12-05 | 1991-04-30 | Meiogenics U.S. Limited Partnership | Methods for detecting nucleic acid sequences |
US4876187A (en) * | 1985-12-05 | 1989-10-24 | Meiogenics, Inc. | Nucleic acid compositions with scissile linkage useful for detecting nucleic acid sequences |
US4855225A (en) | 1986-02-07 | 1989-08-08 | Applied Biosystems, Inc. | Method of detecting electrophoretically separated oligonucleotides |
FR2596761B1 (fr) | 1986-04-08 | 1988-05-20 | Commissariat Energie Atomique | Derives de nucleosides et leur utilisation pour la synthese d'oligonucleotides |
US5091519A (en) | 1986-05-01 | 1992-02-25 | Amoco Corporation | Nucleotide compositions with linking groups |
US5151507A (en) | 1986-07-02 | 1992-09-29 | E. I. Du Pont De Nemours And Company | Alkynylamino-nucleotides |
DE3788914T2 (de) * | 1986-09-08 | 1994-08-25 | Ajinomoto Kk | Verbindungen zur Spaltung von RNS an eine spezifische Position, Oligomere, verwendet bei der Herstellung dieser Verbindungen und Ausgangsprodukte für die Synthese dieser Oligomere. |
US4816571A (en) * | 1987-06-04 | 1989-03-28 | Applied Biosystems, Inc. | Chemical capping by phosphitylation during oligonucleotide synthesis |
US5124246A (en) | 1987-10-15 | 1992-06-23 | Chiron Corporation | Nucleic acid multimers and amplified nucleic acid hybridization assays using same |
US5002867A (en) * | 1988-04-25 | 1991-03-26 | Macevicz Stephen C | Nucleic acid sequence determination by multiple mixed oligonucleotide probes |
US5114839A (en) * | 1988-05-24 | 1992-05-19 | Gesellschaft Fur Biotechnologische Forsching Mbh | Process for dna sequencing using oligonucleotide bank |
US5218103A (en) * | 1988-05-26 | 1993-06-08 | University Patents, Inc. | Nucleoside thiophosphoramidites |
DD287040A5 (de) * | 1989-07-28 | 1991-02-14 | Veb Forschungszentrum Biotechnologie Berlin,De | Neue fluophorderivate, verfahren zu ihrer herstellung und deren verwendung zur herstellung neuartiger fluoreszenzmarkierter nucleoside, nucleotide und oligonucleotide |
US5302509A (en) | 1989-08-14 | 1994-04-12 | Beckman Instruments, Inc. | Method for sequencing polynucleotides |
US5149796A (en) * | 1989-08-31 | 1992-09-22 | City Of Hope | Chimeric DNA-RNA catalytic sequences |
US5407799A (en) * | 1989-09-14 | 1995-04-18 | Associated Universities, Inc. | Method for high-volume sequencing of nucleic acids: random and directed priming with libraries of oligonucleotides |
US5264562A (en) * | 1989-10-24 | 1993-11-23 | Gilead Sciences, Inc. | Oligonucleotide analogs with novel linkages |
US5188934A (en) | 1989-11-14 | 1993-02-23 | Applied Biosystems, Inc. | 4,7-dichlorofluorescein dyes as molecular probes |
AU650257B2 (en) * | 1989-12-04 | 1994-06-16 | Isis Pharmaceuticals, Inc. | Antisense oligonucleotide inhibition of papillomavirus |
US5149797A (en) * | 1990-02-15 | 1992-09-22 | The Worcester Foundation For Experimental Biology | Method of site-specific alteration of rna and production of encoded polypeptides |
AU2674092A (en) * | 1991-09-09 | 1993-04-05 | Baylor College Of Medicine | Method and device for rapid dna or rna sequencing determination by a base addition sequencing scheme |
CA2080305A1 (en) * | 1991-10-11 | 1993-04-12 | Linda M. Western | Method for producing a polynucleotide for use in single primer amplification and phosphorothioate-containing oligonucleotides as primers in nucleic acid amplification |
DE4141178A1 (de) | 1991-12-13 | 1993-06-17 | Europ Lab Molekularbiolog | Verfahren zur sequenzierung von nukleinsaeuren |
US5272250A (en) * | 1992-07-10 | 1993-12-21 | Spielvogel Bernard F | Boronated phosphoramidate compounds |
GB9214873D0 (en) * | 1992-07-13 | 1992-08-26 | Medical Res Council | Process for categorising nucleotide sequence populations |
US5652355A (en) * | 1992-07-23 | 1997-07-29 | Worcester Foundation For Experimental Biology | Hybrid oligonucleotide phosphorothioates |
US5503980A (en) * | 1992-11-06 | 1996-04-02 | Trustees Of Boston University | Positional sequencing by hybridization |
US5795714A (en) * | 1992-11-06 | 1998-08-18 | Trustees Of Boston University | Method for replicating an array of nucleic acid probes |
JP2763263B2 (ja) | 1992-12-31 | 1998-06-11 | 第一合纖株式會社 | 光記録媒体 |
US5476925A (en) * | 1993-02-01 | 1995-12-19 | Northwestern University | Oligodeoxyribonucleotides including 3'-aminonucleoside-phosphoramidate linkages and terminal 3'-amino groups |
US5593826A (en) * | 1993-03-22 | 1997-01-14 | Perkin-Elmer Corporation, Applied Biosystems, Inc. | Enzymatic ligation of 3'amino-substituted oligonucleotides |
US5595739A (en) * | 1993-05-07 | 1997-01-21 | Abbott Laboratories | Hepatitis B virus mutants, reagents and methods for detection |
US5728545A (en) * | 1993-06-18 | 1998-03-17 | The Salk Institute Of Biological Studies | Cloning and recombinant production of CRF receptor (S) |
GB9315847D0 (en) * | 1993-07-30 | 1993-09-15 | Isis Innovation | Tag reagent and assay method |
WO1995004748A1 (en) * | 1993-08-09 | 1995-02-16 | Isis Pharmaceuticals, Inc. | Oligomers for modulating viral processes |
GB9401200D0 (en) * | 1994-01-21 | 1994-03-16 | Medical Res Council | Sequencing of nucleic acids |
DE69531542T2 (de) * | 1994-02-07 | 2004-06-24 | Beckman Coulter, Inc., Fullerton | Ligase/polymerase-vermittelte analyse genetischer elemente von einzelnukleotid-polymorphismen und ihre verwendung in der genetischen analyse |
US5625050A (en) * | 1994-03-31 | 1997-04-29 | Amgen Inc. | Modified oligonucleotides and intermediates useful in nucleic acid therapeutics |
US5750341A (en) * | 1995-04-17 | 1998-05-12 | Lynx Therapeutics, Inc. | DNA sequencing by parallel oligonucleotide extensions |
US8264792B2 (en) | 2009-05-04 | 2012-09-11 | Headway Technologies, Inc. | PMR writer device with multi-level tapered write pole |
US9005565B2 (en) | 2010-06-24 | 2015-04-14 | Hamid-Reza Jahangiri-Famenini | Method and apparatus for forming graphene |
WO2012062804A1 (en) | 2010-11-09 | 2012-05-18 | Novo Nordisk A/S | Double-acylated glp-1 derivatives with a linker |
US8408891B2 (en) | 2010-12-23 | 2013-04-02 | Bridgestone Sports Co., Ltd | Golf ball mold and golf ball manufacturing method |
US9405896B2 (en) | 2011-04-12 | 2016-08-02 | Salesforce.Com, Inc. | Inter-application management of user credential data |
KR101694297B1 (ko) | 2012-08-30 | 2017-01-23 | 한국전자통신연구원 | 가상화 시스템을 위한 데스크탑 가상화 매니저 장치 및 클라이언트 장치 |
JP2016031772A (ja) | 2014-07-30 | 2016-03-07 | 株式会社日立ハイテクファインシステムズ | 熱アシスト磁気ヘッド素子の検査方法及びその装置 |
-
1995
- 1995-04-17 US US08/424,663 patent/US5750341A/en not_active Expired - Lifetime
-
1996
- 1996-04-16 EP EP96912800A patent/EP0871646B1/en not_active Revoked
- 1996-04-16 CA CA002218017A patent/CA2218017C/en not_active Expired - Lifetime
- 1996-04-16 DE DE10184524T patent/DE10184524T1/de active Pending
- 1996-04-16 AU AU55490/96A patent/AU718937B2/en not_active Expired
- 1996-04-16 JP JP53184896A patent/JP4546582B2/ja not_active Expired - Lifetime
- 1996-04-16 EP EP11161232A patent/EP2433950A1/en not_active Withdrawn
- 1996-04-16 DK DK10186062.5T patent/DK2298787T3/en active
- 1996-04-16 EP EP10186062.5A patent/EP2298787B1/en not_active Expired - Lifetime
- 1996-04-16 EP EP10184524A patent/EP2298786A1/en not_active Withdrawn
- 1996-04-16 WO PCT/US1996/005245 patent/WO1996033205A1/en active Application Filing
- 1996-04-16 EP EP11161231A patent/EP2433949A1/en not_active Withdrawn
-
1997
- 1997-06-10 US US08/872,446 patent/US5969119A/en not_active Expired - Lifetime
-
1999
- 1999-03-29 US US09/280,270 patent/US6306597B1/en not_active Expired - Lifetime
-
2007
- 2007-07-13 JP JP2007185093A patent/JP2007282639A/ja active Pending
- 2007-12-25 JP JP2007333327A patent/JP2008086328A/ja active Pending
-
2010
- 2010-11-18 JP JP2010257927A patent/JP5279800B2/ja not_active Expired - Lifetime
- 2010-11-18 JP JP2010257918A patent/JP2011092191A/ja active Pending
Patent Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5403708A (en) * | 1992-07-06 | 1995-04-04 | Brennan; Thomas M. | Methods and compositions for determining the sequence of nucleic acids |
WO1994003630A2 (en) * | 1992-08-04 | 1994-02-17 | Beckman Instruments, Inc. | Method, reagent and kit for the detection and amplification of nucleic acid sequences |
WO1994016101A2 (en) * | 1993-01-07 | 1994-07-21 | Koester Hubert | Dna sequencing by mass spectrometry |
Also Published As
Publication number | Publication date |
---|---|
JPH11503908A (ja) | 1999-04-06 |
US6306597B1 (en) | 2001-10-23 |
JP2007282639A (ja) | 2007-11-01 |
DK2298787T3 (en) | 2016-01-11 |
EP2433949A1 (en) | 2012-03-28 |
EP0871646B1 (en) | 2011-09-07 |
CA2218017C (en) | 2003-12-02 |
CA2218017A1 (en) | 1996-10-24 |
WO1996033205A1 (en) | 1996-10-24 |
JP2008086328A (ja) | 2008-04-17 |
AU5549096A (en) | 1996-11-07 |
EP0871646A1 (en) | 1998-10-21 |
DE10184524T1 (de) | 2011-07-07 |
EP2298787A1 (en) | 2011-03-23 |
US5750341A (en) | 1998-05-12 |
JP5279800B2 (ja) | 2013-09-04 |
AU718937B2 (en) | 2000-05-04 |
JP2011092192A (ja) | 2011-05-12 |
JP4546582B2 (ja) | 2010-09-15 |
EP2298787B1 (en) | 2015-10-28 |
US5969119A (en) | 1999-10-19 |
EP2298786A1 (en) | 2011-03-23 |
EP2433950A1 (en) | 2012-03-28 |
EP0871646A4 (en) | 2005-12-07 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
JP5279800B2 (ja) | 並行オリゴヌクレオチド伸長によるdna配列決定 | |
JP3872812B2 (ja) | 段階連結および切断によるdna配列決定 | |
US5714330A (en) | DNA sequencing by stepwise ligation and cleavage | |
JP3722833B2 (ja) | 核酸配列分析の平行プライマー拡張手法 | |
US6175002B1 (en) | Adaptor-based sequence analysis | |
US6153379A (en) | Parallel primer extension approach to nucleic acid sequence analysis | |
US5831065A (en) | Kits for DNA sequencing by stepwise ligation and cleavage | |
AU754991B2 (en) | DNA sequencing by parallel oligonucleotide extensions | |
WO2002020839A1 (fr) | Procédé de détermination de séquence de base |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
A521 | Request for written amendment filed |
Free format text: JAPANESE INTERMEDIATE CODE: A523 Effective date: 20111121 |
|
A131 | Notification of reasons for refusal |
Free format text: JAPANESE INTERMEDIATE CODE: A131 Effective date: 20120807 |
|
A521 | Request for written amendment filed |
Free format text: JAPANESE INTERMEDIATE CODE: A523 Effective date: 20121106 |
|
A131 | Notification of reasons for refusal |
Free format text: JAPANESE INTERMEDIATE CODE: A131 Effective date: 20130521 |
|
A02 | Decision of refusal |
Free format text: JAPANESE INTERMEDIATE CODE: A02 Effective date: 20131015 |