EP2514433B1 - Verfahren auf Mikro-RNA-Basis zur Diagnose, Prognose und Behandlung von Lungenkrebs - Google Patents

Verfahren auf Mikro-RNA-Basis zur Diagnose, Prognose und Behandlung von Lungenkrebs Download PDF

Info

Publication number
EP2514433B1
EP2514433B1 EP12165734.0A EP12165734A EP2514433B1 EP 2514433 B1 EP2514433 B1 EP 2514433B1 EP 12165734 A EP12165734 A EP 12165734A EP 2514433 B1 EP2514433 B1 EP 2514433B1
Authority
EP
European Patent Office
Prior art keywords
mir
rna
homo sapiens
expression
hsa
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Not-in-force
Application number
EP12165734.0A
Other languages
English (en)
French (fr)
Other versions
EP2514433A2 (de
EP2514433A3 (de
Inventor
Carlo Croce
Nozomu Yanaihara
Curtis Harris
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Ohio State University Research Foundation
Original Assignee
Ohio State University Research Foundation
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Ohio State University Research Foundation filed Critical Ohio State University Research Foundation
Publication of EP2514433A2 publication Critical patent/EP2514433A2/de
Publication of EP2514433A3 publication Critical patent/EP2514433A3/de
Application granted granted Critical
Publication of EP2514433B1 publication Critical patent/EP2514433B1/de
Not-in-force legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Images

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • C12Q1/6886—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00—Antineoplastic agents
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/106—Pharmacogenomics, i.e. genetic variability in individual responses to drugs and drug metabolism
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/118—Prognosis of disease development
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/136—Screening for pharmacological compounds
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/158—Expression markers
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/178—Oligonucleotides characterized by their use miRNA, siRNA or ncRNA

Definitions

  • Lung cancer causes more deaths worldwide than any other form of cancer ( Goochnan. G.E., Thorax 57:994-999 (2002 )).
  • lung cancer is the primary cause of cancer death among both men and women.
  • the death rate from lung cancer was an estimated 134,900 deaths.
  • Lung cancer is also the leading cause of cancer death in all European countries, and numbers of lung cancer-related deaths are rapidly increasing in developing countries as well.
  • MicroRNAs are a class of small, non-coding RNAs that control gene expression by hybridizing to and triggering either translational repression or, less frequently, degradation of a messenger RNA (mRNA) target.
  • miRNAs messenger RNA
  • the discovery and study of miRNAs has revealed miRNA-mediated gene regulatory mechanisms that play important roles in organismal development and various cellular processes, such as cell differentiation, cell growth and cell death ( Cheng, A.M., et al., Nucleic Acids Res. 33:1290-1297 (2005 )).
  • Recent studies suggest that aberrant expression of particular miRNAs may be involved in human diseases, such as neurological disorders ( Ishizuka, A., et al., Genes Dev. 16:2497-2508 (2002 )) and cancer.
  • WO 2005/118806 discloses methods and compositions for isolating, enriching, and/or labeling miRNA molecules and for preparing and using arrays or other detection techniques for miRNA analysis. Moreover, WO 2005/118806 concerns methods and compositions for generating miRNA profiles and employing such profiles for therapeutic, diagnostic, and prognostic applications.
  • WO 2005/078139 discusses the association between miRNA genes and chromosomal features involved in the etiology of different cancers and suggests that cancer can be treated by restoring the level of miR gene expression to normal.
  • Takamizawa J et al. discloses reduced expression of the let-7 miRNA in human lung cancers and suggests that alterations in the miRNA expression may have a prognostic impact on the survival of surgically treated lung cancer patients.
  • microRNA microarrays containing all known human microRNAs has permitted a simultaneous analysis of the expression of every miRNA in a sample ( Liu, C.G., et al., Proc Natl. Acad. Sci. U.S.A. 101:9740-9744 (2004 )).
  • These microRNA microarrays have not only been used to confirm that miR-16-1 is deregulated in human CLL cells, but also to generate miRNA expression signatures that are associated with well-defined clinicopathological features of human CLL ( Calin, G.A., et al., Proc. Natl. Acad. Sci. U.S.A. 101:1175-11760 (2004 )).
  • the present invention provides a novel method the diagnosis of lung cancer. Methods for the prognosis and treatment of lung cancer, and compositions for the prognosis and treatment of lung cancer are also disclosed.
  • the present invention is based, in part, on the identification of specific miRNAs associated with altered expression levels in lung cancer cells.
  • the invention encompasses a method of diagnosing whether a subject has lung cancer.
  • the level of a group of miR gene products in a test sample from the subject is compared to the level of the corresponding miR gene products in a control sample, said group consisting of miR-21, miR-205 and miR-126*.
  • An increase in the level of the miR-21 and the miR-205 gene products in the test sample and a decrease in the level of the miR-126* gene product in the test sample, relative to the level of the corresponding miR gene products in a control sample, is indicative of the subject having lung cancer.
  • the at least one miR gene product may be selected from the group consisting of miR-21, miR-191, miR-126*, miR-210, miR-155, miR-143, miR-205, miR-192-prec, miR-224, miR-126, miR-24-2, miR-30a-5p, miR-212, miR-140, miR-9, miR-214, miR-17-3p, miR-124a-1, miR-218-2, miR-95, miR-145, miR-198, miR-216-prec, miR-219-1, miR-106a, miR-197, miR-192, miR-125a-prec, miR-26a-1-prec, miR-146, miR-203, miR-199b-prec, let-7a-2-prec, miR-27b, miR-32, miR-29b-2, miR-220, miR-33, miR-181c-prec, miR-150, miR-
  • the at least one miR gene product is selected from the group consisting of miR-21, miR-191, miR-155, miR-210, miR-126* and miR-224
  • the lung cancer is a lung adenocarcinoma and the at least one miR gene product is selected from the group consisting of miR-21, miR-191, miR-155, miR-210, miR-126*, miR-126, miR-24-2, miR-219-1, miR-95, miR-192-prec, miR-220, miR-216-prec, miR-204-prec, miR-188, miR-198, miR-145 and miR-224.
  • the level of the at least one miR gene product can be measured using a variety of techniques that are well known to those of skill in the art (e.g., quantitative or semi-quantitative RT-PCR, Northern blot analysis, solution hybridization detection).
  • the level of the group of miR gene products is measured by reverse transcribing RNA from a test sample obtained from the subject to provide a set of target oligodeoxynucleotides, hybridizing the target oligodeoxynucleotides to a microarray comprising miRNA-specific probe oligonucleotides to provide a hybridization profile for the test sample, and comparing the test sample hybridization profile to a hybridization profile generated from a control sample.
  • an alteration in the signal of the group of miRNA gene products in the test sample relative to the control sample is indicative of the subject having lung cancer. Also disclosed are methods in which the microarray comprises miRNA-specific probe oligonucleotides for a substantial portion of all known human miRNAs.
  • the microarray comprises miRNA-3a specific probe oligonucleotides for one or more miRNAs selected from the group consisting of miR-21, miR-191, miR-126*, miR-210, miR-155, miR-143, miR-205, miR-192-prec, miR-224, miR-126, miR-24-2, miR-30a-5p, miR-212, miR-140, miR-9, miR-214, miR-17-3p, miR-124a-1, miR-218-2, miR-95, miR-145, miR-198, miR-216-prec, miR-219-1, miR-106a, miR-197, miR-192, miR-125a-prec, miR-26a-1-prec, miR-146, miR-203, miR-199b-prec, let-7a-2-prec, miR-27b, miR-32, miR-29b-2, miR-220, miR-33
  • This disclosure also encompasses methods of determining the prognosis of a subject with lung cancer, comprising measuring the level of at least one miR gene product, which is associated with an adverse prognosis in lung cancer, in a test sample from the subject. According to these methods, an alteration in the level of a miR gene product that is associated with an adverse prognosis, in the test sample, as compared to the level of a corresponding miR gene product in a control sample, is indicative of an adverse prognosis.
  • the at least one miR gene product may be selected from the group consisting of miR-155, miR-17-3p, miR-106a, miR-93, let-7a-2, miR-145, let-7b, miR-20 and miR-21.
  • the lung cancer may be a lung adenocarcinoma and the at least one miR gene product may be selected from the group consisting of miR-155 and let-7a-2.
  • the level of the at least one miR gene product can be measured as described herein (e.g., quantitative or semi-quantitative RT-PCR, Northern blot analysis, solution hybridization detection, microarray analysis).
  • An alteration in the signal of at least one miRNA in the test sample, relative to the control sample is indicative of the subject either having, or being at risk for developing, a lung cancer with an adverse prognosis.
  • An alteration in the signal of miR-125a, miR-125b-1, miR-224 and/or miR-21 is indicative of the subject either having, or being at risk for developing, a lung cancer with an adverse prognosis.
  • the microarray may comprise miRNA-specific probe oligonucleotides for one or more miRNAs selected from the group consisting of miR-21, miR-191, miR-126*, miR-210, miR-155, miR-143, miR-205, miR-192-prec, miR-224, miR-126, miR-24-2, miR-30a-5p, miR-212, miR-140, miR-9, miR-214, miR-17-3p, miR-124a-1, miR-218-2, miR-95, miR-145, miR-198, miR-216-prec, miR-219-1, miR-106a, miR-197, miR-192, miR-125a-prec, miR-26a-1-prec, miR-146, miR-
  • This disclosure also encompasses methods of treating lung cancer in a subject, wherein at least one miR gene product is deregulated (e.g., down-regulated, up-regulated) in the cancer cells of the subject.
  • the method comprises administering an effective amount of an isolated miR gene product, or an isolated variant or biologically-active fragment thereof, such that proliferation of cancer cells in the subject is inhibited.
  • the method comprises administering to the subject an effective amount of at least one compound for inhibiting expression of the at least one miR gene product, such that proliferation of lung cancer cells is inhibited.
  • the methods of treating lung cancer in a subject disclosed herein may additionally comprise the step of first determining the amount of at least one miR gene product in lung cancer cells from the subject, and comparing that level of the miR gene product to the level of a corresponding miR gene product in control cells. If expression of the miR gene product is deregulated (e.g., down-regulated, up-regulated) in lung cancer cells, the methods further comprise altering the amount of the at least one miR gene product expressed in the lung cancer cells.
  • the amount of the miR gene product expressed in the cancer cells may be less than the amount of the miR gene product expressed in control cells, and an effective amount of the miR gene product, or an isolated variant or biologically-active fragment thereof, is administered to the subject. Alternatively, the amount of the miR gene product expressed in the cancer cells is greater than the amount of the miR gene product expressed in control cells, and an effective amount of at least one compound for inhibiting expression of the at least one miR gene is administered to the subject.
  • compositions for treating lung cancer may comprise at least one isolated miR gene product, or an isolated variant or biologically-active fragment thereof, and a pharmaceutically-acceptable carrier.
  • the at least one miR gene product may correspond to a miR gene product that has a decreased level of expression in lung cancer cells relative to suitable control cells.
  • the isolated miR gene product may be selected from the group consisting of miR-126*, miR-143, miR-192, miR-224, miR-126, miR-30a-5p, miR-140, miR-9, miR-124a-1, miR-218-2, miR-95, miR-145, miR-198, miR-216, miR-219-1, miR-125a, miR-26a-1, miR-199b, let-7a-2, miR-27b, miR-32, miR-29b-2, miR-220, miR-33, miR-181c, miR-101-1, miR-124a-3, let-7f-1 and a combination thereof.
  • the pharmaceutical compositions may comprise at least one miR expression-inhibition compound.
  • the at least one miR expression-inhibition compound may be specific for a miR gene product whose expression is greater in lung cancer cells than control cells.
  • the miR expression-inhibition compound may be specific for one or more miR gene products selected from the group consisting of miR-21, miR-191, miR-210, miR-155, miR-205, miR-24-2, miR-212, miR-214, miR-17-3p, miR-106a, miR-197, miR-192, miR-146, miR-203, miR-150 and a combination thereof.
  • This disclosure also encompasses methods of identifying an anti-lung cancer agent, comprising providing a test agent to a cell and measuring the level of at least one miR gene product in the cell.
  • the method may comprise providing a test agent to a cell and measuring the level of at least one miR gene product associated with decreased expression levels in lung cancer cells. An increase in the level of the miR gene product in the cell, relative to a suitable control cell, is indicative of the test agent being an anti-lung cancer agent.
  • the at least one miR gene product associated with decreased expression levels in lung cancer cells may be selected from the group consisting of miR-126*, miR-143, miR-192, miR-224, miR-126, miR-30a-5p, miR-140, miR-9, miR-124a-1, miR-218-2, miR-95, miR-145, miR-198, miR-216, miR-219-1, miR-125a, miR-26a-1, miR-199b, let-7a-2, miR-27b, miR-32, miR-29b-2, miR-220, miR-33, miR-181c, miR-101-1, miR-124a-3, let-7f-1 and a combination thereof.
  • the method may comprise providing a test agent to a cell and measuring the level of at least one miR gene product associated with increased expression levels in lung cancer cells.
  • the at least one miR gene product associated with increased expression levels in lung cancer cells may be selected from the group consisting of miR-21, miR-191, miR-210, miR-155, miR-205, miR-24-2, miR-212, miR-214, miR-17-3p, miR-106a, miR-197, miR-192, miR-146, miR-203, miR-150 and a combination thereof.
  • the present invention is based, in part, on the identification of particular microRNAs having altered expression in lung cancer cells relative to normal control cells, and on association of these microRNAs with particular diagnostic, prognostic and therapeutic features.
  • a "miR gene product,” “microRNA,” “miR,” or “miRNA” refers to the unprocessed or processed RNA transcript from a miR gene. As the miR gene products are not translated into protein, the term “miR gene products” does not include proteins.
  • the unprocessed miR gene transcript is also called a “miR precursor,” and typically comprises an RNA transcript of about 70-100 nucleotides in length.
  • the miR precursor can be processed by digestion with an RNAse (for example, Dicer, Argonaut, RNAse III (e.g., E. coli RNAse III)) into an active 19-25 nucleotide RNA molecule. This active 19-25 nucleotide RNA molecule is also called the "processed" miR gene transcript or "mature” miRNA.
  • the active 19-25 nucleotide RNA molecule can be obtained from the miR precursor through natural processing routes (e.g., using intact cells or cell lysates) or by synthetic processing routes (e.g., using isolated processing enzymes, such as isolated Dicer, Argonaut, or RNAse III). It is understood that the active 19-25 nucleotide RNA molecule can also be produced directly by biological or chemical synthesis, without having to be processed from the miR precursor. When a microRNA is referred to herein by name, the name corresponds to both the precursor and mature forms, unless otherwise indicated.
  • the present invention encompasses a method of diagnosing whether a subject has lung cancer, comprising measuring the level of a group of miR gene products in a test sample from the subject and comparing the level of the miR gene product in the test sample to the level of a corresponding miR gene product in a control sample.
  • a "subject" can be any mammal that has, or is suspected of having, lung cancer.
  • the subject is a human who has, or is suspected of having, lung cancer.
  • the lung cancer can be any form of lung cancer, for example, lung cancers of differing histology (e.g., adenocarcinoma, squamous cell carcinoma). Furthermore, the lung cancer may be associated with a particular prognosis (e.g., low survival rate, fast progression).
  • a particular prognosis e.g., low survival rate, fast progression.
  • Tables 1a and 1b depict the nucleotide sequences of particular precursor and mature human microRNAs.
  • Table 1a- Human microRNA Precursor Sequences Precursor Name Sequence (5' To 3')* SEQ ID NO. let-7a-1 1 let-7a-2 2 let-7a-3 3 let-7a-4 4 let-7b 5 let-7c 6 let-7d 7 let-7d-bl 8 let-7d-v2 9 let-7e 10 let-7f-1 11 let-7f-2-1 12 let-7f-2-2 13 let-7g 14 let-7i 15 miR-1b-1-1 16 miR-1b-1-2 17 miR-1b-2 18 miR-1b 19 miR-1d 20 miR-7-1a 21 miR-7-1b 22 miR-7-2 23 miR-7-3 24 miR-9-1 25 miR-9-2 26 miR-9-3 27 miR-10a 28 miR-10b 29 miR-15a-2 30 miR-15a 31 miR-15b-1 32 miR-15b-2 33 miR-16-1 34 miR-16-2 35 miR-16-13 36 miR-17 37 mi
  • miR-103-2 104 miR-103-2 105 miR-103-1 106 miR-104-17 107 miR-105-1 108 miR-105-2 109 miR-106-a 110 miR-106-b 111 miR-107 112 miR-108-1-small 113 miR-108-2-small 114 miR-122a-1 115 miR-122a-2 116 miR-123 117 miR-124a-1 118 miR-124a-2 119 miR-124a-3 120 miR-124a 121 miR-124b 122 miR-125a-1 123 miR-125a-2 124 miR-125b-1 125 miR-125b-2 126 miR-126-1 127 miR-126-2 128 miR-127-1 129 miR-127-2 130 miR-128a 131 miR-128b 132 miR-128 133 miR-129-1 134 miR-129-2 135 miR-130a 136 miR-131-1 137 miR-131-3 138 miR-131
  • miR-294-1 (chr16) 274 miR-296 275 miR-299 276 miR-301 277 miR-302a 278 miR-302b 279 miR-302c 280 miR-302d 281 miR-320 282 miR-321 283 miR-323 284 miR-324 285 miR-325 286 miR-326 287 miR-328 288 miR-330 289 miR-331 290 miR-335 291 miR-337 292 miR-338 293 miR-339 294 miR-340 295 miR-342 296 miR-345 297 miR-346 298 miR-367 299 miR-368 300 miR-369 301 miR-370 302 miR-3 71 303 miR-372 304 miR-3 73 305 miR-374 306 miR-hes1 307 miR-hes2 308 miR-hes3 309 * An underlined sequence within a precursor sequence corresponds to a mature processed miR transcript
  • Some precursor sequences have two underlined sequences denoting two different mature miRs that are derived from the same precursor. All sequences are human. Table 1b- Human Mature microRNA Sequences. Mature miRNA Name Mature miRNA Sequence (5' to 3') SEQ ID NO.
  • the level of at least one miR gene product can be measured in cells of a biological sample obtained from the subject.
  • a tissue sample can be removed from a subject suspected of having lung cancer by conventional biopsy techniques.
  • a blood sample can be removed from the subject, and white blood cells can be isolated for DNA extraction by standard techniques.
  • the blood or tissue sample is preferably obtained from the subject prior to initiation of radiotherapy, chemotherapy or other therapeutic treatment.
  • a corresponding control tissue or blood sample, or a control reference sample can be obtained from unaffected tissues of the subject, from a normal human individual or population of normal individuals, or from cultured cells corresponding to the majority of cells in the subject's sample.
  • control tissue or blood sample is then processed along with the sample from the subject, so that the levels of miR gene product produced from a given miR gene in cells from the subject's sample can be compared to the corresponding miR gene product levels from cells of the control sample.
  • a reference sample can be obtained and processed separately (e.g., at a different time) from the test sample and the level of a miR gene product produced from a given miR gene in cells from the test sample can be compared to the corresponding miR gene product level from the reference sample.
  • the level of at least one miR gene product in the test sample may be greater than the level of the corresponding miR gene product in the control sample (i.e., expression of the miR gene product is "up-regulated”).
  • expression of a miR gene product is "up-regulated” when the amount of miR gene product in a cell or tissue sample from a subject is greater than the amount of the same gene product in a control cell or tissue sample.
  • the level of at least one miR gene product in the test sample may be less than the level of the corresponding miR gene product in the control sample (i.e., expression of the miR gene product is "down-regulated").
  • RNA expression standards can comprise, for example, a zero miR gene expression level, the miR gene expression level in a standard cell line, the miR gene expression level in unaffected tissues of the subject, or the average level of miR gene expression previously obtained for a population of normal human controls.
  • An alteration i.e ., an increase or decrease in the level of a miR gene product in the sample obtained from the subject, relative to the level of a corresponding miR gene product in a control sample, is indicative of the presence of lung cancer in the subject.
  • the level of at least one miR gene product in the test sample may be greater than the level of the corresponding miR gene product in the control sample.
  • the level of at least one miR gene product in the test sample may be less than the level of the corresponding miR gene product in the control sample.
  • the at least one miR gene product is selected from the group consisting of miR-21, miR-191, miR-126*, miR-210, miR-155, miR-143, miR-205, miR-192-prec, miR-224, miR-126, miR-24-2, miR-30a-5p, miR-212, miR-140, miR-9, miR-214, miR-17-3p, miR-124a-1, miR-218-2, miR-95, miR-145, miR-198, miR-216-prec, miR-219-1, miR-106a, miR-197, miR-192, miR-125a-prec, miR-26a-1-prec, miR-146, miR-203, miR-199b-prec, let-7a-2-prec, miR-27b, miR-32, miR-29b-2, miR-220, miR-33, miR-181c-prec, miR
  • the lung cancer may be a lung adenocarcinoma and the at least one miR gene product may be selected from the group consisting of miR-21, miR-191, miR-155, miR-210, miR-126* and miR-224.
  • the miR gene product may not be one or more of let7a-2, let-7c, let-7g, let-7i, miR-7-2, miR-7-3, miR-9, miR-9-1, miR-10a, miR-15a, miR-15b, miR-16-1, miR-16-2, miR-17-5p, miR-20a, miR-21, miR-24-1, miR-24-2, miR-25, miR-29b-2, miR-30, miR-30a-5p, miR-30c, miR-30d, miR-31, miR-32, miR-34, miR-34a, miR-34a prec, miR-34a-1, miR-34a-2, miR-92-2, miR-96, miR-99a, miR-99b prec, miR-100, miR-103, miR-106a, miR-107, miR-123, miR-124a-1, miR-125b-1, miR-125b-2, miR-126*, miR-127
  • the level of a miR gene product in a sample can be measured using any technique that is suitable for detecting RNA expression levels in a biological sample. Suitable techniques (e.g., Northern blot analysis, RT-PCR, in situ hybridization) for determining RNA expression levels in a biological sample (e.g., cells, tissues) are well known to those of skill in the art.
  • the level of at least one miR gene product may be detected using Northern blot analysis. For example, total cellular RNA can be purified from cells by homogenization in the presence of nucleic acid extraction buffer, followed by centrifugation. Nucleic acids are precipitated, and DNA is removed by treatment with DNase and precipitation.
  • RNA molecules are then separated by gel electrophoresis on agarose gels according to standard techniques, and transferred to nitrocellulose filters.
  • the RNA is then immobilized on the filters by heating. Detection and quantification of specific RNA is accomplished using appropriately labeled DNA or RNA probes complementary to the RNA in question. See, for example, Molecular Cloning: A Laboratory Manual, J. Sambrook et al ., eds., 2nd edition, Cold Spring Harbor Laboratory Press, 1989, Chapter 7.
  • Suitable probes for Northern blot hybridization of a given miR gene product can be produced from the nucleic acid sequences provided in Table 1a and Table 1b and include, but are not limited to, probes having at least about 70%, 75%, 80%, 85%, 90%, 95%, 98% or 99% complementarity to a miR gene product of interest, as well as probes that have complete complementarity to a miR gene product of interest.
  • Methods for preparation of labeled DNA and RNA probes, and the conditions for hybridization thereof to target nucleotide sequences are described in Molecular Cloning: A Laboratory Manual, J. Sambrook et al ., eds., 2nd edition, Cold Spring Harbor Laboratory Press, 1989, Chapters 10 and 11.
  • the nucleic acid probe can be labeled with, e.g ., a radionuclide, such as 3 H, 32 P, 33 P, 14 C, or 35 S; a heavy metal; a ligand capable of functioning as a specific binding pair member for a labeled ligand ( e . g ., biotin, avidin or an antibody); a fluorescent molecule; a chemiluminescent molecule; an enzyme or the like.
  • a radionuclide such as 3 H, 32 P, 33 P, 14 C, or 35 S
  • a heavy metal such as 3 H, 32 P, 33 P, 14 C, or 35 S
  • a heavy metal such as 3 H, 32 P, 33 P, 14 C, or 35 S
  • a heavy metal such as 3 H, 32 P, 33 P, 14 C, or 35 S
  • a heavy metal such as 3 H, 32 P, 33 P, 14 C, or 35 S
  • a heavy metal such as 3 H, 32 P, 33 P, 14
  • Probes can be labeled to high specific activity by either the nick translation method of Rigby et al. (1977), J. Mol. Biol. 113:237-251 or by the random priming method of Fienberg et al. (1983), Anal. Biochem. 132:6-13 .
  • the latter is the method of choice for synthesizing 32 P-labeled probes of high specific activity from single-stranded DNA or from RNA templates. For example, by replacing preexisting nucleotides with highly radioactive nucleotides according to the nick translation method, it is possible to prepare 32 P-labeled nucleic acid probes with a specific activity well in excess of 10 8 cpm/microgram.
  • Autoradiographic detection of hybridization can then be performed by exposing hybridized filters to photographic film. Densitometric scanning of the photographic films exposed by the hybridized filters provides an accurate measurement of miR gene transcript levels. Using another approach, miR gene transcript levels can be quantified by computerized imaging systems, such as the Molecular Dynamics 400-B 2D Phosphorimager available from Amersham Biosciences, Piscataway, NJ.
  • the random-primer method can be used to incorporate an analogue, for example, the dTTP analogue 5-(N-(N-biotinyl-epsilon-aminocaproyl)-3-aminoallyl)deoxyuridine triphosphate, into the probe molecule.
  • analogue for example, the dTTP analogue 5-(N-(N-biotinyl-epsilon-aminocaproyl)-3-aminoallyl)deoxyuridine triphosphate
  • the biotinylated probe oligonucleotide can be detected by reaction with biotin-binding proteins, such as avidin, streptavidin and antibodies (e.g., anti-biotin antibodies) coupled to fluorescent dyes or enzymes that produce color reactions.
  • determining the levels of RNA transcripts can be accomplished using the technique of in situ hybridization.
  • This technique requires fewer cells than the Northern blotting technique and involves depositing whole cells onto a microscope cover slip and probing the nucleic acid content of the cell with a solution containing radioactive or otherwise labeled nucleic acid (e.g., cDNA or RNA) probes.
  • This technique is particularly well-suited for analyzing tissue biopsy samples from subjects.
  • the practice of the in situ hybridization technique is described in more detail in U.S. Patent No. 5,427,916 .
  • Suitable probes for in situ hybridization of a given miR gene product can be produced from the nucleic acid sequences provided in Table 1a and Table 1b, and include, but are not limited to, probes having at least about 70%, 75%, 80%, 85%, 90%, 95%, 98% or 99% complementarity to a miR gene product of interest, as well as probes that have complete complementarity to a miR gene product of interest, as described above.
  • the relative number of miR gene transcripts in cells can also be determined by reverse transcription of miR gene transcripts, followed by amplification of the reverse-transcribed transcripts by polymerase chain reaction (RT-PCR).
  • the levels of miR gene transcripts can be quantified in comparison with an internal standard, for example, the level of mRNA from a "housekeeping" gene present in the same sample.
  • a suitable "housekeeping" gene for use as an internal standard includes, e.g., myosin or glyceraldehyde-3-phosphate dehydrogenase (G3PDH).
  • RNA e.g., at least 20 ⁇ g for each Northern blot
  • autoradiographic techniques that require radioactive isotopes.
  • an oligolibrary in microchip format (i.e., a microarray), may be constructed containing a set of oligonucleotide (e.g., oligodeoxynucleotide) probes that are specific for a set of miR genes.
  • oligonucleotide e.g., oligodeoxynucleotide
  • the expression level of multiple microRNAs in a biological sample can be determined by reverse transcribing the RNAs to generate a set of target oligodeoxynucleotides, and hybridizing them to probe the oligonucleotides on the microarray to generate a hybridization, or expression, profile.
  • probe oligonucleotide or “probe oligodeoxynucleotide” refers to an oligonucleotide that is capable of hybridizing to a target oligonucleotide.
  • target oligonucleotide or “target oligodeoxynucleotide” refers to a molecule to be detected (e.g., via hybridization).
  • miR-specific probe oligonucleotide or "probe oligonucleotide specific for a miR” is meant a probe oligonucleotide that has a sequence selected to hybridize to a specific miR gene product, or to a reverse transcript of the specific miR gene product.
  • an "expression profile” or “hybridization profile” of a particular sample is essentially a fingerprint of the state of the sample; while two states may have any particular gene similarly expressed, the evaluation of a number of genes simultaneously allows the generation of a gene expression profile that is unique to the state of the cell. That is, normal tissue may be distinguished from lung cancer tissue, and within lung cancer tissue, different prognosis states (for example, good or poor long term survival prospects) may be determined. By comparing expression profiles of lung cancer tissue in different states, information regarding which genes are important (including both up- and down-regulation of genes) in each of these states is obtained.
  • sequences that are differentially expressed in lung cancer tissue or normal lung tissue allows the use of this information in a number of ways. For example, a particular treatment regime may be evaluated (e.g., to determine whether a chemotherapeutic drug acts to improve the long-term prognosis in a particular patient). Similarly, diagnosis may be done or confirmed by comparing patient samples with known expression profiles. Furthermore, these gene expression profiles (or individual genes) allow screening of drug candidates that suppress the lung cancer expression profile or convert a poor prognosis profile to a better prognosis profile.
  • the invention provides a method of diagnosing whether a subject has lung cancer, comprising reverse transcribing RNA from a test sample obtained from the subject to provide a set of target oligodeoxynucleotides, hybridizing the target oligodeoxynucleotides to a microarray comprising miRNA-specific probe oligonucleotides to provide a hybridization profile for the test sample, and comparing the test sample hybridization profile to a hybridization profile generated from a control sample, wherein an alteration in the signal of a group of miRNA is indicative of the subject having lung cancer, wherein the group of miRNA consists of miR-21, miR-205 and miR-126*; and wherein the level of the miR-21 and the miR-205 gene products in the test sample are greater than the level of the corresponding miR gene product in the control sample, and wherein the level of the miR-126* gene product in the test sample is less than the level of the corresponding miR gene product in the control sample.
  • the microarray comprises miRNA-specific probe oligonucleotides for a substantial portion of all known human miRNAs.
  • the microarray may comprise miRNA-specific probe oligonucleotides for one or more miRNAs selected from the group consisting of miR-21, miR-191, miR-126*, miR-210, miR-155, miR-143, miR-205, miR-192-prec, miR-224, miR-126, miR-24-2, miR-30a-5p, miR-212, miR-140, miR-9, miR-214, miR-17-3p, miR-124a-1, miR-218-2, miR-95, miR-145, miR-198, miR-216-prec, miR-219-1, miR-106a, miR-197, miR-192, miR-125a-prec, miR-26a-1-prec, miR-146, miR-203, miR-199b-prec, let
  • the microarray can be prepared from gene-specific oligonucleotide probes generated from known miRNA sequences.
  • the array may contain two different oligonucleotide probes for each miRNA, one containing the active, mature sequence and the other being specific for the precursor of the miRNA.
  • the array may also contain controls, such as one or more mouse sequences differing from human orthologs by only a few bases, which can serve as controls for hybridization stringency conditions.
  • tRNAs and other RNAs e.g., rRNAs, mRNAs
  • sequences are selected based upon the absence of any homology with any known miRNAs.
  • the microarray may be fabricated using techniques known in the art. For example, probe oligonucleotides of an appropriate length, e.g., 40 nucleotides, are 5'-amine modified at position C6 and printed using commercially available microarray systems, e.g., the GeneMachine OmniGrid TM 100 Microarrayer and Amersham CodeLink TM activated slides. Labeled cDNA oligomer corresponding to the target RNAs is prepared by reverse transcribing the target RNA with labeled primer. Following first strand synthesis, the RNA/DNA hybrids are denatured to degrade the RNA templates.
  • probe oligonucleotides of an appropriate length, e.g., 40 nucleotides, are 5'-amine modified at position C6 and printed using commercially available microarray systems, e.g., the GeneMachine OmniGrid TM 100 Microarrayer and Amersham CodeLink TM activated slides.
  • the labeled target cDNAs thus prepared are then hybridized to the microarray chip under hybridizing conditions, e.g., 6X SSPE/30% formamide at 25°C for 18 hours, followed by washing in 0.75X TNT at 37°C for 40 minutes. At positions on the array where the immobilized probe DNA recognizes a complementary target cDNA in the sample, hybridization occurs.
  • the labeled target cDNA marks the exact position on the array where binding occurs, allowing automatic detection and quantification.
  • the output consists of a list of hybridization events, indicating the relative abundance of specific cDNA sequences, and therefore the relative abundance of the corresponding complementary miRs, in the patient sample.
  • the labeled cDNA oligomer may be a biotin-labeled cDNA, prepared from a biotin-labeled primer.
  • the microarray is then processed by direct detection of the biotin-containing transcripts using, e.g., Streptavidin-Alexa647 conjugate, and scanned utilizing conventional scanning methods. Image intensities of each spot on the array are proportional to the abundance of the corresponding miR in the patient sample.
  • the use of the array has several advantages for miRNA expression detection.
  • the relatively limited number of miRNAs allows the construction of a common microarray for several species, with distinct oligonucleotide probes for each. Such a tool would allow for analysis of trans-species expression for each known miR under various conditions.
  • a microchip containing miRNA-specific probe oligonucleotides corresponding to a substantial portion of the miRNome, preferably the entire miRNome may be employed to carry out miR gene expression profiling, for analysis of miR expression patterns. Distinct miR signatures can be associated with established disease markers, or directly with a disease state.
  • total RNA from a sample from a subject suspected of having a cancer is quantitatively reverse transcribed to provide a set of labeled target oligodeoxynucleotides complementary to the RNA in the sample.
  • the target oligodeoxynucleotides are then hybridized to a microarray comprising miRNA-specific probe oligonucleotides to provide a hybridization profile for the sample.
  • the result is a hybridization profile for the sample representing the expression pattern of miRNA in the sample.
  • the hybridization profile comprises the signal from the binding of the target oligodeoxynucleotides from the sample to the miRNA-specific probe oligonucleotides in the microarray.
  • the profile may be recorded as the presence or absence of binding (signal vs. zero signal). More preferably, the profile recorded includes the intensity of the signal from each hybridization.
  • the profile is compared to the hybridization profile generated from a normal, e.g., noncancerous, control sample. An alteration in the signal is indicative of the presence of, or propensity to develop, cancer in the subject.
  • This disclosure also encompasses methods of determining the prognosis of a subject with lung cancer, comprising measuring the level of at least one miR gene product, which is associated with a particular prognosis in lung cancer (e.g., a good or positive prognosis, a poor or adverse prognosis), in a test sample from the subject.
  • a particular prognosis in lung cancer e.g., a good or positive prognosis, a poor or adverse prognosis
  • an alteration in the level of a miR gene product that is associated with a particular prognosis, in the test sample, as compared to the level of a corresponding miR gene product in a control sample is indicative of the subject having a lung cancer with a particular prognosis.
  • the miR gene product may be associated with an adverse (i.e., poor) prognosis.
  • an adverse prognosis examples include, but are not limited to, low survival rate and rapid disease progression.
  • the at least one miR gene product associated with a particular prognosis may be selected from the group consisting of miR-155, miR-17-3p, miR-106a, miR-93, let-7a-2, miR-145, let-7b, miR-20 and miR-21.
  • the lung cancer may be a lung adenocarcinoma and the at least one miR gene product associated with a particular prognosis may be selected from the group consisting of miR-155 and let-7a-2.
  • the level of at least one miR gene product may be measured by reverse transcribing RNA from a test sample obtained from the subject to provide a set of target oligodeoxynucleotides, hybridizing the target oligodeoxynucleotides to a microarray that comprises miRNA-specific probe oligonucleotides to provide a hybridization profile for the test sample, and comparing the test sample hybridization profile to a hybridization profile generated from a control sample.
  • altering the level of the miR gene product e.g., by decreasing the level of a miR that is up-regulated in lung cancer cells, by increasing the level of a miR that is down-regulated in lung cancer cells
  • altering the level of the miR gene product may successfully treat the lung cancer.
  • this disclosure encompasses methods of treating lung cancer in a subject, wherein at least one miR gene product is deregulated (e.g., down-regulated, up-regulated) in the cells (e.g., lung cancer cells) of the subject.
  • the level of at least one miR gene product in a test sample e.g., a lung cancer sample
  • the level of at least one miR gene product in a test sample may be greater than the level of the corresponding miR gene product in a control sample.
  • the level of at least one miR gene product in a test sample e.g., a lung cancer sample
  • the method comprises administering an effective amount of the at least one isolated miR gene product, or an isolated variant or biologically-active fragment thereof, such that proliferation of cancer cells in the subject is inhibited.
  • administering an effective amount of an isolated miR gene product to the subject can inhibit proliferation of the cancer cell.
  • the isolated miR gene product that is administered to the subject can be identical to an endogenous wild-type miR gene product (e.g., a miR gene product shown in Table 1a or Table 1b) that is down-regulated in the cancer cell or it can be a variant or biologically-active fragment thereof.
  • a "variant" of a miR gene product refers to a miRNA that has less than 100% identity to a corresponding wild-type miR gene product and possesses one or more biological activities of the corresponding wild-type miR gene product.
  • biological activities include, but are not limited to, inhibition of expression of a target RNA molecule (e.g., inhibiting translation of a target RNA molecule, modulating the stability of a target RNA molecule, inhibiting processing of a target RNA molecule) and inhibition of a cellular process associated with lung cancer (e.g., cell differentiation, cell growth, cell death).
  • variants include species variants and variants that are the consequence of one or more mutations (e.g., a substitution, a deletion, an insertion) in a miR gene.
  • the variant may be at least about 70%, 75%, 80%, 85%, 90%, 95%, 98%, or 99% identical to a corresponding wild-type miR gene product.
  • a "biologically-active fragment" of a miR gene product refers to an RNA fragment of a miR gene product that possesses one or more biological activities of a corresponding wild-type miR gene product.
  • biological activities include, but are not limited to, inhibition of expression of a target RNA molecule and inhibition of a cellular process associated with lung cancer.
  • the biologically-active fragment is at least about 5, 7, 10, 12, 15, or 17 nucleotides in length.
  • An isolated miR gene product can be administered to a subject in combination with one or more additional anti-cancer treatments. Suitable anti-cancer treatments include, but are not limited to, chemotherapy, radiation therapy and combinations thereof (e.g., chemoradiation).
  • the method comprises administering to the subject an effective amount of a compound that inhibits expression of the at least one miR gene product, such that proliferation of lung cancer cells is inhibited.
  • a compound that inhibits expression of the at least one miR gene product such that proliferation of lung cancer cells is inhibited.
  • Such compounds are referred to herein as miR gene expression-inhibition compounds.
  • suitable miR gene expression-inhibition compounds include, but are not limited to, those described herein (e.g., double-stranded RNA, antisense nucleic acids and enzymatic RNA molecules).
  • a miR gene expression-inhibiting compound can be administered to a subject in combination with one or more additional anti-cancer treatments. Suitable anti-cancer treatments include, but are not limited to, chemotherapy, radiation therapy and combinations thereof (e.g., chemoradiation).
  • the isolated miR gene product that is deregulated in lung cancer may be selected from the group consisting of miR-21, miR-191, miR-126*, miR-210, miR-155, miR-143, miR-205, miR-192-prec, miR-224, miR-126, miR-24-2, miR-30a-5p, miR-212, miR-140, miR-9, miR-214, miR-17-3p, miR-124a-1 miR-218-2, miR-95, miR-145, miR-198, miR-216-prec, miR-219-1, miR-106a, miR-197, miR-192, miR-125a-prec, miR-26a-1-prec, miR-146, miR-203, miR-199b-prec, let-7a-2-prec, miR-27b, miR-32, miR-29b-2, miR-220, miR-33, miR-181c-prec, miR-150
  • the at least one miR gene product may be selected from the group consisting of miR-21, miR-205 and miR-216.
  • the lung cancer may be a lung adenocarcinoma and the at least one miR gene product may be selected from the group consisting of miR-21, miR-191, miR-155, miR-210, miR-126* and miR-224.
  • the miR gene product may not be one or more of let7a-2, let-7c, let-7g, let-7i, miR-7-2, miR-7-3, miR-9, miR-9-1, miR-10a, miR-15a, miR-15b, miR-16-1, miR-16-2, miR-17-5p, miR-20a, miR-21, miR-24-1, miR-24-2, miR-25, miR-29b-2, miR-30, miR-30a-5p, miR-30c, miR-30d, miR-31, miR-32, miR-34, miR-34a, miR-34a prec, miR-34a-1 miR-34a-2, miR-92-2, miR-96, miR-99a, miR-99b prec, miR-100, miR-103, miR-106a, miR-107, miR-123, miR-124a-1 miR-125b-1 miR-125b-2, miR-126*, miR-127, miR
  • treat refers to ameliorating symptoms associated with a disease or condition, for example, lung cancer, including preventing or delaying the onset of the disease symptoms, and/or lessening the severity or frequency of symptoms of the disease or condition.
  • subject and “individual” are defined herein to include animals, such as mammals, including, but not limited to, primates, cows, sheep, goats, horses, dogs, cats, rabbits, guinea pigs, rats, mice or other bovine, ovine, equine, canine, feline, rodent, or murine species.
  • the animal is a human.
  • an "effective amount" of an isolated miR gene product is an amount sufficient to inhibit proliferation of a cancer cell in a subject suffering from lung cancer.
  • an effective amount of a miR gene product to be administered to a given subject by taking into account factors, such as the size and weight of the subject; the extent of disease penetration; the age, health and sex of the subject; the route of administration; and whether the administration is regional or systemic.
  • an effective amount of an isolated miR gene product can be based on the approximate weight of a tumor mass to be treated.
  • the approximate weight of a tumor mass can be determined by calculating the approximate volume of the mass, wherein one cubic centimeter of volume is roughly equivalent to one gram.
  • An effective amount of the isolated miR gene product based on the weight of a tumor mass can be in the range of about 10-500 micrograms/gram of tumor mass.
  • the tumor mass can be at least about 10 micrograms/gram of tumor mass, at least about 60 micrograms/gram of tumor mass or at least about 100 micrograms/gram of tumor mass.
  • an effective amount of an isolated miR gene product can also be based on the approximate or estimated body weight of a subject to be treated. Preferably, such effective amounts are administered parenterally or enterally, as described herein.
  • an effective amount of the isolated miR gene product that is administered to a subject can range from about 5 - 3000 micrograms/kg of body weight, from about 700 - 1000 micrograms/kg of body weight, or greater than about 1000 micrograms/kg of body weight.
  • a miR gene product can be administered to the subject once ( e . g ., as a single injection or deposition).
  • a miR gene product can be administered once or twice daily to a subject for a period of from about three to about twenty-eight days, more particularly from about seven to about ten days.
  • a miR gene product is administered once a day for seven days.
  • a dosage regimen comprises multiple administrations, it is understood that the effective amount of the miR gene product administered to the subject can comprise the total amount of gene product administered over the entire dosage regimen.
  • an "isolated" miR gene product is one that is synthesized, or altered or removed from the natural state through human intervention.
  • a synthetic miR gene product, or a miR gene product partially or completely separated from the coexisting materials of its natural state is considered to be “isolated.”
  • An isolated miR gene product can exist in a substantially-purified form, or can exist in a cell into which the miR gene product has been delivered.
  • a miR gene product that is deliberately delivered to, or expressed in, a cell is considered an "isolated” miR gene product.
  • a miR gene product produced inside a cell from a miR precursor molecule is also considered to be an "isolated” molecule.
  • the isolated miR gene products described herein can be used for the manufacture of a medicament for treating lung cancer in a subject (e.g., a human).
  • Isolated miR gene products can be obtained using a number of standard techniques.
  • the miR gene products can be chemically synthesized or recombinantly produced using methods known in the art.
  • miR gene products may be chemically synthesized using appropriately protected ribonucleoside phosphoramidites and a conventional DNA/RNA synthesizer.
  • RNA molecules or synthesis reagents include, e.g., Proligo (Hamburg, Germany), Dharmacon Research (Lafayette, CO, U.S.A.), Pierce Chemical (part of Perbio Science, Rockford, IL, U.S.A.), Glen Research (Sterling, VA, U.S.A.), ChemGenes (Ashland, MA, U.S.A.) and Cruachem (Glasgow, UK).
  • the miR gene products can be expressed from recombinant circular or linear DNA plasmids using any suitable promoter.
  • suitable promoters for expressing RNA from a plasmid include, e.g., the U6 or HI RNA pol III promoter sequences, or the cytomegalovirus promoters. Selection of other suitable promoters is within the skill in the art.
  • the recombinant plasmids can also comprise inducible or regulatable promoters for expression of the miR gene products in cancer cells.
  • the miR gene products that are expressed from recombinant plasmids can be isolated from cultured cell expression systems by standard techniques.
  • the miR gene products that are expressed from recombinant plasmids can also be delivered to, and expressed directly in, the cancer cells.
  • the use of recombinant plasmids to deliver the miR gene products to cancer cells is discussed in more detail below.
  • the miR gene products can be expressed from a separate recombinant plasmid, or they can be expressed from the same recombinant plasmid.
  • the miR gene products may be expressed as RNA precursor molecules from a single plasmid, and the precursor molecules are processed into the functional miR gene product by a suitable processing system, including, but not limited to, processing systems extant within a cancer cell.
  • suitable processing systems include, e.g., the in vitro Drosophila cell lysate system (e.g., as described in U.S. Published Patent Application No. 2002/0086356 to Tuschl et al .) and the E. coli RNAse III system (e.g., as described in U.S. Published Patent Application No. 2004/0014113 to Yang et al .).
  • plasmids suitable for expressing the miR gene products are within the skill in the art. See, for example, Zeng et al. (2002), Molecular Cell 9:1327-1333 ; Tuschl (2002), Nat. Biotechnol, 20:446-448 ; Brummelkamp et al. (2002), Science 296:550-553 ; Miyagishi et al. (2002), Nat. Biotechnol. 20:497-500 ; Paddison et al. (2002), Genes Dev. 16:948-958 ; Lee et al. (2002), Nat. Biotechnol. 20:500-505 ; and Paul et al. (2002), Nat. Biotechnol. 20:505-508 .
  • a plasmid expressing the miR gene products may comprise a sequence encoding a miR precursor RNA under the control of the CMV intermediate-early promoter.
  • "under the control" of a promoter means that the nucleic acid sequences encoding the miR gene product are located 3' of the promoter, so that the promoter can initiate transcription of the miR gene product coding sequences.
  • the miR gene products can also be expressed from recombinant viral vectors. It is contemplated that the miR gene products can be expressed from two separate recombinant viral vectors, or from the same viral vector.
  • the RNA expressed from the recombinant viral vectors can either be isolated from cultured cell expression systems by standard techniques, or can be expressed directly in cancer cells. The use of recombinant viral vectors to deliver the miR gene products to cancer cells is discussed in more detail below.
  • the recombinant viral vectors comprise sequences encoding the miR gene products and any suitable promoter for expressing the RNA sequences. Suitable promoters include, but are not limited to, the U6 or HI RNA pol III promoter sequences, or the cytomegalovirus promoters. Selection of other suitable promoters is within the skill in the art.
  • the recombinant viral vectors can also comprise inducible or regulatable promoters for expression of the miR gene products in a cancer cell.
  • Any viral vector capable of accepting the coding sequences for the miR gene products can be used; for example, vectors derived from adenovirus (AV); adeno-associated virus (AAV); retroviruses (e.g ., lentiviruses (LV), Rhabdoviruses, murine leukemia virus); herpes virus, and the like.
  • AV adenovirus
  • AAV adeno-associated virus
  • retroviruses e.g ., lentiviruses (LV), Rhabdoviruses, murine leukemia virus
  • herpes virus and the like.
  • the tropism of the viral vectors can be modified by pseudotyping the vectors with envelope proteins or other surface antigens from other viruses, or by substituting different viral capsid proteins, as appropriate.
  • lentiviral vectors can be pseudotyped with surface proteins from vesicular stomatitis virus (VSV), rabies, Ebola, Mokola, and the like.
  • AAV vectors can be made to target different cells by engineering the vectors to express different capsid protein serotypes.
  • an AAV vector expressing a serotype 2 capsid on a serotype 2 genome is called AAV 2/2.
  • This serotype 2 capsid gene in the AAV 2/2 vector can be replaced by a serotype 5 capsid gene to produce an AAV 2/5 vector.
  • AAV vectors that express different capsid protein serotypes are within the skill in the art; see , e.g ., Rabinowitz, J.E., et al. (2002), J. Virol. 76:791-801 .
  • Particularly suitable viral vectors are those derived from AV and AAV.
  • a suitable AV vector for expressing the miR gene products, a method for constructing the recombinant AV vector, and a method for delivering the vector into target cells are described in Xia et al. (2002), Nat. Biotech. 20:1006-1010 .
  • Suitable AAV vectors for expressing the miR gene products, methods for constructing the recombinant AAV vector, and methods for delivering the vectors into target cells are described in Samulski et al. (1987), J. Virol. 61:3096-3101 ; Fisher et al. (1996), J. Virol., 70:520-532 ; Samulski et al. (1989), J. Virol.
  • the miR gene products may be expressed from a single recombinant AAV vector comprising the CMV intermediate early promoter.
  • a recombinant AAV viral vector may comprise a nucleic acid sequence encoding a miR precursor RNA in operable connection with a polyT termination sequence under the control of a human U6 RNA promoter.
  • operable connection with a polyT termination sequence means that the nucleic acid sequences encoding the sense or antisense strands are immediately adjacent to the polyT termination signal in the 5' direction.
  • the polyT termination signals act to terminate transcription.
  • inhibiting miR expression means that the production of the precursor and/or active, mature form of miR gene product after treatment is less than the amount produced prior to treatment.
  • One skilled in the art can readily determine whether miR expression has been inhibited in a cancer cell, using, for example, the techniques for determining miR transcript level discussed herein. Inhibition can occur at the level of gene expression (i.e., by inhibiting transcription of a miR gene encoding the miR gene product) or at the level of processing (e.g., by inhibiting processing of a miR precursor into a mature, active miR).
  • an "effective amount" of a compound that inhibits miR expression is an amount sufficient to inhibit proliferation of a cancer cell in a subject suffering from a cancer (e.g., lung cancer).
  • a cancer e.g., lung cancer.
  • One skilled in the art can readily determine an effective amount of a miR expression-inhibiting compound to be administered to a given subject, by taking into account factors, such as the size and weight of the subject; the extent of disease penetration; the age, health and sex of the subject; the route of administration; and whether the administration is regional or systemic.
  • an effective amount of the expression-inhibiting compound can be based on the approximate weight of a tumor mass to be treated, as described herein.
  • An effective amount of a compound that inhibits miR expression can also be based on the approximate or estimated body weight of a subject to be treated, as described herein.
  • One skilled in the art can also readily determine an appropriate dosage regimen for administering a compound that inhibits miR expression to a given subject, as described herein.
  • Suitable compounds for inhibiting miR gene expression include double-stranded RNA (such as short- or small-interfering RNA or "siRNA”), antisense nucleic acids, and enzymatic RNA molecules, such as ribozymes. Each of these compounds can be targeted to a given miR gene product and interfere with the expression (e.g., by inhibiting translation, by inducing cleavage and/or degradation) of the target miR gene product.
  • siRNA short- or small-interfering RNA or "siRNA”
  • antisense nucleic acids such as ribozymes.
  • enzymatic RNA molecules such as ribozymes.
  • expression of a given miR gene can be inhibited by inducing RNA interference of the miR gene with an isolated double-stranded RNA (“dsRNA”) molecule which has at least 90%, for example at least 95%, at least 98%, at least 99%, or 100%, sequence homology with at least a portion of the miR gene product.
  • dsRNA isolated double-stranded RNA
  • the dsRNA molecule may be a "short or small interfering RNA" or "siRNA.”
  • siRNA useful in the present methods comprise short double-stranded RNA from about 17 nucleotides to about 29 nucleotides in length, preferably from about 19 to about 25 nucleotides in length.
  • the siRNA comprise a sense RNA strand and a complementary antisense RNA strand annealed together by standard Watson-Crick base-pairing interactions (hereinafter "base-paired").
  • the sense strand comprises a nucleic acid sequence that is substantially identical to a nucleic acid sequence contained within the target miR gene product.
  • a nucleic acid sequence in an siRNA that is "substantially identical" to a target sequence contained within the target mRNA is a nucleic acid sequence that is identical to the target sequence, or that differs from the target sequence by one or two nucleotides.
  • the sense and antisense strands of the siRNA can comprise two complementary, single-stranded RNA molecules, or can comprise a single molecule in which two complementary portions are base-paired and are covalently linked by a single-stranded "hairpin" area.
  • the siRNA can also be altered RNA that differs from naturally-occurring RNA by the addition, deletion, substitution and/or alteration of one or more nucleotides.
  • Such alterations can include addition of non-nucleotide material, such as to the end(s) of the siRNA or to one or more internal nucleotides of the siRNA, or modifications that make the siRNA resistant to nuclease digestion, or the substitution of one or more nucleotides in the siRNA with deoxyribonucleotides.
  • One or both strands of the siRNA can also comprise a 3' overhang.
  • a "3' overhang” refers to at least one unpaired nucleotide extending from the 3'-end of a duplexed RNA strand.
  • the siRNA may comprise at least one 3' overhang of from 1 to about 6 nucleotides (which includes ribonucleotides or deoxyribonucleotides) in length, from 1 to about 5 nucleotides in length, from 1 to about 4 nucleotides in length, or from about 2 to about 4 nucleotides in length.
  • the 3' overhang may be present on both strands of the siRNA, and is 2 nucleotides in length.
  • each strand of the siRNA can comprise 3' overhangs of dithymidylic acid ("TT") or diuridylic acid ("uu").
  • the siRNA can be produced chemically or biologically, or can be expressed from a recombinant plasmid or viral vector, as described above for the isolated miR gene products.
  • Exemplary methods for producing and testing dsRNA or siRNA molecules are described in U.S. Published Patent Application No. 2002/0173478 to Gewirtz and in U.S. Published Patent Application No. 2004/0018176 to Reich et al. .
  • an antisense nucleic acid refers to a nucleic acid molecule that binds to target RNA by means of RNA-RNA, RNA-DNA or RNA-peptide nucleic acid interactions, which alters the activity of the target RNA.
  • Antisense nucleic acids suitable for use in the present methods are single-stranded nucleic acids (e . g ., RNA, DNA, RNA-DNA chimeras, peptide nucleic acids (PNA)) that generally comprise a nucleic acid sequence complementary to a contiguous nucleic acid sequence in a miR gene product.
  • the antisense nucleic acid can comprise a nucleic acid sequence that is 50-100% complementary, 75-100% complementary, or 95-100% complementary to a contiguous nucleic acid sequence in a miR gene product. Nucleic acid sequences of particular human miR gene products are provided in Table 1a and Table 1b. Without wishing to be bound by any theory, it is believed that the antisense nucleic acids activate RNase H or another cellular nuclease that digests the miR gene product/antisense nucleic acid duplex.
  • Antisense nucleic acids can also contain modifications to the nucleic acid backbone or to the sugar and base moieties (or their equivalent) to enhance target specificity, nuclease resistance, delivery or other properties related to efficacy of the molecule.
  • modifications include cholesterol moieties, duplex intercalators, such as acridine, or one or more nuclease-resistant groups.
  • Antisense nucleic acids can be produced chemically or biologically, or can be expressed from a recombinant plasmid or viral vector, as described above for the isolated miR gene products. Exemplary methods for producing and testing are within the skill in the art; see , e.g ., Stein and Cheng (1993), Science 261:1004 and U.S. Patent No. 5,849,902 to Woolf et al ..
  • an "enzymatic nucleic acid” refers to a nucleic acid comprising a substrate binding region that has complementarity to a contiguous nucleic acid sequence of a miR gene product, and which is able to specifically cleave the miR gene product.
  • the enzymatic nucleic acid substrate binding region can be, for example, 50-100% complementary, 75-100% complementary, or 95-100% complementary to a contiguous nucleic acid sequence in a miR gene product.
  • the enzymatic nucleic acids can also comprise modifications at the base, sugar, and/or phosphate groups.
  • An exemplary enzymatic nucleic acid for use in the present methods is a ribozyme.
  • the enzymatic nucleic acids can be produced chemically or biologically, or can be expressed from a recombinant plasmid or viral vector, as described above for the isolated miR gene products.
  • exemplary methods for producing and testing dsRNA or siRNA molecules are described in Werner and Uhlenbeck (1995), Nucl. Acids Res. 23:2092-96 ; Hammann et al. (1999), Antisense and Nucleic Acid Drug Dev. 9:25-31 ; and U.S. Patent No. 4,987,071 to Cech et al.
  • Administration of at least one miR gene product, or at least one compound for inhibiting miR expression will inhibit the proliferation of cancer cells in a subject who has a cancer (e.g., lung cancer).
  • a cancer e.g., lung cancer
  • to "inhibit the proliferation of a cancer cell” means to kill the cell, or permanently or temporarily arrest or slow the growth of the cell.
  • Inhibition of cancer cell proliferation can be inferred if the number of such cells in the subject remains constant or decreases after administration of the miR gene products or miR gene expression-inhibiting compounds.
  • An inhibition of cancer cell proliferation can also be inferred if the absolute number of such cells increases, but the rate of tumor growth decreases.
  • the number of cancer cells in the body of a subject can be determined by direct measurement, or by estimation from the size of primary or metastatic tumor masses.
  • the number of cancer cells in a subject can be measured by immunohistological methods, flow cytometry, or other techniques designed to detect characteristic surface markers of cancer cells.
  • the size of a tumor mass can be ascertained by direct visual observation, or by diagnostic imaging methods, such as X-ray, magnetic resonance imaging, ultrasound, and scintigraphy. Diagnostic imaging methods used to ascertain size of the tumor mass can be employed with or without contrast agents, as is known in the art.
  • the size of a tumor mass can also be ascertained by physical means, such as palpation of the tissue mass or measurement of the tissue mass with a measuring instrument, such as a caliper.
  • the miR gene products or miR gene expression-inhibiting compounds can be administered to a subject by any means suitable for delivering these compounds to cancer cells of the subject.
  • the miR gene products or miR expression-inhibiting compounds can be administered by methods suitable to transfect cells of the subject with these compounds, or with nucleic acids comprising sequences encoding these compounds.
  • the cells may be transfected with a plasmid or viral vector comprising sequences encoding at least one miR gene product or miR gene expression-inhibiting compound.
  • Transfection methods for eukaryotic cells include, e.g., direct injection of the nucleic acid into the nucleus or pronucleus of a cell; electroporation; liposome transfer or transfer mediated by lipophilic materials; receptor-mediated nucleic acid delivery, bioballistic or particle acceleration; calcium phosphate precipitation, and transfection mediated by viral vectors.
  • cells can be transfected with a liposomal transfer compound, e.g., DOTAP (N-[1-(2,3-dioleoyloxy)propyl]-N,N,N-trimethyl-ammonium methylsulfate, Boehringer-Mannheim) or an equivalent, such as LIPOFECTIN.
  • DOTAP N-[1-(2,3-dioleoyloxy)propyl]-N,N,N-trimethyl-ammonium methylsulfate, Boehringer-Mannheim
  • LIPOFECTIN LIPOFECTIN
  • a miR gene product or miR gene expression-inhibiting compound can also be administered to a subject by any suitable enteral or parenteral administration route.
  • Suitable enteral administration routes for the present methods include, e.g., oral, rectal, or intranasal delivery.
  • Suitable parenteral administration routes include, e.g., intravascular administration (e.g., intravenous bolus injection, intravenous infusion, intra-arterial bolus injection, intra-arterial infusion and catheter instillation into the vasculature); peri- and intra-tissue injection (e.g., peri-tumoral and intra-tumoral injection, intra-retinal injection, or subretinal injection); subcutaneous injection or deposition, including subcutaneous infusion (such as by osmotic pumps); direct application to the tissue of interest, for example by a catheter or other placement device (e.g., a retinal pellet or a suppository or an implant comprising a porous, non-porous, or gelatinous material); and inhalation.
  • Particularly suitable administration routes are injection, infusion and direct injection into the tumor.
  • a miR gene product or miR gene product expression-inhibiting compound can be administered to the subject either as naked RNA, in combination with a delivery reagent, or as a nucleic acid (e . g ., a recombinant plasmid or viral vector) comprising sequences that express the miR gene product or miR gene expression-inhibiting compound.
  • Suitable delivery reagents include, e.g., the Mirus Transit TKO lipophilic reagent; LIPOFECTIN; lipofectamine; cellfectin; polycations ( e . g ., polylysine) and liposomes.
  • Recombinant plasmids and viral vectors comprising sequences that express the miR gene products or miR gene expression-inhibiting compounds, and techniques for delivering such plasmids and vectors to cancer cells, are discussed herein and/or are well known in the art.
  • Liposomes may be used to deliver a miR gene product or miR gene expression-inhibiting compound (or nucleic acids comprising sequences encoding them) to a subject. Liposomes can also increase the blood half-life of the gene products or nucleic acids. Suitable liposomes can be formed from standard vesicle-forming lipids, which generally include neutral or negatively charged phospholipids and a sterol, such as cholesterol. The selection of lipids is generally guided by consideration of factors, such as the desired liposome size and half-life of the liposomes in the blood stream. A variety of methods are known for preparing liposomes, for example, as described in Szoka et al. (1980), Ann. Rev. Biophys. Bioeng. 9:467 ; and U.S. Patent Nos. 4,235,871 , 4,501,728 , 4,837,028 , and 5,019,369 .
  • the liposomes for use in the present methods can comprise a ligand molecule that targets the liposome to cancer cells.
  • Ligands that bind to receptors prevalent in cancer cells such as monoclonal antibodies that bind to tumor cell antigens, are preferred.
  • the liposomes for use in the present methods can also be modified so as to avoid clearance by the mononuclear macrophage system ("MMS") and reticuloendothelial system ("RES").
  • MMS mononuclear macrophage system
  • RES reticuloendothelial system
  • Such modified liposomes have opsonization-inhibition moieties on the surface or incorporated into the liposome structure.
  • Particularly preferred liposomes comprise both an opsonization-inhibition moiety and a ligand.
  • Opsonization-inhibiting moieties for use in preparing the liposomes are typically large hydrophilic polymers that are bound to the liposome membrane.
  • an opsonization-inhibiting moiety is "bound" to a liposome membrane when it is chemically or physically attached to the membrane, e.g., by the intercalation of a lipid-soluble anchor into the membrane itself, or by binding directly to active groups of membrane lipids.
  • These opsonization-inhibiting hydrophilic polymers form a protective surface layer that significantly decreases the uptake of the liposomes by the MMS and RES; e.g., as described in U.S. Patent No. 4,920,016 .
  • Opsonization-inhibiting moieties suitable for modifying liposomes are preferably water-soluble polymers with a number-average molecular weight from about 500 to about 40,000 daltons, and more preferably from about 2,000 to about 20,000 daltons.
  • Such polymers include polyethylene glycol (PEG) or polypropylene glycol (PPG) or derivatives thereof; e.g., methoxy PEG or PPG, and PEG or PPG stearate; synthetic polymers, such as polyacrylamide or poly N-vinyl pyrrolidone; linear, branched, or dendrimeric polyamidoamines; polyacrylic acids; polyalcohols, e.g., polyvinylalcohol and polyxylitol to which carboxylic or amino groups are chemically linked, as well as gangliosides, such as ganglioside GM1.
  • PEG polyethylene glycol
  • PPG polypropylene glycol
  • synthetic polymers such as polyacrylamide or
  • Copolymers of PEG, methoxy PEG, or methoxy PPG, or derivatives thereof, are also suitable.
  • the opsonization-inhibiting polymer can be a block copolymer of PEG and either a polyamino acid, polysaccharide, polyamidoamine, polyethyleneamine, or polynucleotide.
  • the opsonization-inhibiting polymers can also be natural polysaccharides containing amino acids or carboxylic acids, e.g., galacturonic acid, glucuronic acid, mannuronic acid, hyaluronic acid, pectic acid, neuraminic acid, alginic acid, carrageenan; aminated polysaccharides or oligosaccharides (linear or branched); or carboxylated polysaccharides or oligosaccharides, e.g., reacted with derivatives of carbonic acids with resultant linking of carboxylic groups.
  • the opsonization-inhibiting moiety is a PEG, PPG, or a derivative thereof. Liposomes modified with PEG or PEG-derivatives are sometimes called "PEGylated liposomes.”
  • the opsonization-inhibiting moiety can be bound to the liposome membrane by any one of numerous well-known techniques.
  • an N-hydroxysuccinimide ester of PEG can be bound to a phosphatidyl-ethanolamine lipid-soluble anchor, and then bound to a membrane.
  • a dextran polymer can be derivatized with a stearylamine lipid-soluble anchor via reductive amination using Na(CN)BH 3 and a solvent mixture, such as tetrahydrofuran and water in a 30:12 ratio at 60°C.
  • Liposomes modified with opsonization-inhibition moieties remain in the circulation much longer than unmodified liposomes. For this reason, such liposomes are sometimes called "stealth" liposomes. Stealth liposomes are known to accumulate in tissues fed by porous or "leaky” microvasculature. Thus, tissue characterized by such microvasculature defects, for example, solid tumors (e.g., lung cancers), will efficiently accumulate these liposomes; see Gabizon, et al. (1988), Proc. Natl. Acad. Sci., U.S.A., 18:6949-53 .
  • liposomes that are modified with opsonization-inhibition moieties are particularly suited to deliver the miR gene products or miR gene expression-inhibition compounds (or nucleic acids comprising sequences encoding them) to tumor cells.
  • the miR gene products or miR gene expression-inhibition compounds can be formulated as pharmaceutical compositions, sometimes called "medicaments," prior to administering them to a subject, according to techniques known in the art. Accordingly, this disclosure encompasses pharmaceutical compositions for treating lung cancer.
  • the pharmaceutical composition may comprise at least one isolated miR gene product, or an isolated variant or biologically-active fragment thereof, and a pharmaceutically-acceptable carrier.
  • the at least one miR gene product may correspond to a miR gene product that has a decreased level of expression in lung cancer cells relative to suitable control cells.
  • the isolated miR gene product may be selected from the group consisting of miR-126*, miR-192, miR-224, miR-126, miR-30a-5p, miR-140, miR-9, miR-124a-1, miR-218-2, miR-95, miR-145, miR-198, miR-216, miR-219-1, miR-125a, miR-26a-1, miR-199b, let-7a-2, miR-27b, miR-32, miR-29b-2, miR-220, miR-33, miR-181c, miR-101-1, miR-124a-3, miR-125b-1, let-7f-1 and a combination thereof.
  • the isolated miR gene product may not be miR-15a or miR-16-1.
  • the miR gene product may not be miR-210 or miR-212.
  • the miR gene product may not be miR-21, miR-143, miR-205 or miR-9.
  • the miR gene product may not be miR-21, miR-191, miR-126*, miR-210, miR-155, miR-143, miR-205, miR-126, miR-30a-5p, miR-140, miR-214, miR-218-2, miR-145, miR-106a, miR-192, miR-203, miR-150, miR-220, miR-212 or miR-9.
  • the pharmaceutical compositions may comprise at least one miR expression-inhibition compound.
  • the at least one miR gene expression-inhibition compound may be specific for a miR gene whose expression is greater in lung cancer cells than control cells.
  • the miR gene expression-inhibition compound may be specific for one or more miR gene products selected from the group consisting of miR-21, miR-191, miR-210, miR-155, miR-205, miR-24-2, miR-212, miR-214, miR-17-3p, miR-106a, miR-197, miR-192, miR-146, miR-203, miR-150 and a combination thereof.
  • the isolated miR gene product may not be specific for miR-15a or miR-16-1.
  • the miR gene product may not be specific for miR-210 or miR-212.
  • the miR gene product may not be specific for miR-21, miR-143, miR-205 or miR-9.
  • the miR gene product may not be specific for miR-21, miR-191, miR-126*, miR-210, miR-155, miR-143, miR-205, miR-126, miR-30a-5p, miR-140, miR-214, miR-218-2, miR-145, miR-106a, miR-192, miR-203, miR-150, miR-220, miR-212 or miR-9.
  • compositions may be at least sterile and pyrogen-free.
  • pharmaceutical compositions include formulations for human and veterinary use. Methods for preparing pharmaceutical compositions are within the skill in the art, for example, as described in Remington's Pharmaceutical Science, 17th ed., Mack Publishing Company, Easton, PA. (1985 ).
  • compositions disclosed herein comprise at least one miR gene product or miR gene expression-inhibition compound (or at least one nucleic acid comprising a sequence encoding the miR gene product or miR gene expression-inhibition compound) (e.g., 0.1 to 90% by weight), or a physiologically-acceptable salt thereof, mixed with a pharmaceutically-acceptable carrier.
  • the pharmaceutical composition may additionally comprise one or more anti-cancer agents (e.g., chemotherapeutic agents).
  • the pharmaceutical formulations can also comprise at least one miR gene product or miR gene expression-inhibition compound (or at least one nucleic acid comprising a sequence encoding the miR gene product or miR gene expression-inhibition compound), which are encapsulated by liposomes and a pharmaceutically-acceptable carrier.
  • the pharmaceutical composition may comprise a miR gene or gene product that is not miR-15, miR-16, miR-143 and/or miR-145.
  • Especially suitable pharmaceutically-acceptable carriers are water, buffered water, normal saline, 0.4% saline, 0.3% glycine, hyaluronic acid and the like.
  • the pharmaceutical compositions may comprise at least one miR gene product or miR gene expression-inhibition compound (or at least one nucleic acid comprising a sequence encoding the miR gene product or miR gene expression-inhibition compound) that is resistant to degradation by nucleases.
  • nucleic acids that are nuclease resistant, for example by incorporating one or more ribonucleotides that is modified at the 2'-position into the miR gene product.
  • Suitable 2'-modified ribonucleotides include those modified at the 2'-position with fluoro, amino, alkyl, alkoxy and O-allyl.
  • the pharmaceutical compositions can also comprise conventional pharmaceutical excipients and/or additives.
  • Suitable pharmaceutical excipients include stabilizers, antioxidants, osmolality adjusting agents, buffers, and pH adjusting agents.
  • Suitable additives include, e.g., physiologically biocompatible buffers (e.g., tromethamine hydrochloride), additions of chelants (such as, for example, DTPA or DTPA-bisamide) or calcium chelate complexes (such as, for example, calcium DTPA, CaNaDTPA-bisamide), or, optionally, additions of calcium or sodium salts (for example, calcium chloride, calcium ascorbate, calcium gluconate or calcium lactate).
  • Pharmaceutical compositions can be packaged for use in liquid form, or can be lyophilized.
  • conventional nontoxic solid pharmaceutically-acceptable carriers can be used; for example, pharmaceutical grades of mannitol, lactose, starch, magnesium stearate, sodium saccharin, talcum, cellulose, glucose, sucrose, magnesium carbonate, and the like.
  • a solid pharmaceutical composition for oral administration can comprise any of the carriers and excipients listed above and 10-95%, preferably 25%-75%, of the at least one miR gene product or miR gene expression-inhibition compound (or at least one nucleic acid comprising sequences encoding them).
  • a pharmaceutical composition for aerosol (inhalational) administration can comprise 0.01-20% by weight, preferably 1%-10% by weight, of the at least one miR gene product or miR gene expression-inhibition compound (or at least one nucleic acid comprising a sequence encoding the miR gene product or miR gene expression-inhibition compound) encapsulated in a liposome as described above, and a propellant.
  • a carrier can also be included as desired; e.g., lecithin for intranasal delivery.
  • compositions can further comprise one or more anti-cancer agents.
  • the compositions may comprise at least one miR gene product or miR gene expression-inhibition compound (or at least one nucleic acid comprising a sequence encoding the miR gene product or miR gene expression-inhibition compound) and at least one chemotherapeutic agent.
  • Chemotherapeutic agents that are suitable for the methods disclosed herein include, but are not limited to, DNA-alkylating agents, anti-tumor antibiotic agents, anti-metabolic agents, tubulin stabilizing agents, tubulin destabilizing agents, hormone antagonist agents, topoisomerase inhibitors, protein kinase inhibitors, HMG-CoA inhibitors, CDK inhibitors, cyclin inhibitors, caspase inhibitors, metalloproteinase inhibitors, antisense nucleic acids, triple-helix DNAs, nucleic acids aptamers, and molecularly-modified viral, bacterial and exotoxic agents.
  • Suitable agents for the compositions include, but are not limited to, cytidine arabinoside, methotrexate, vincristine, etoposide (VP-16), doxorubicin (adriamycin), cisplatin (CDDP), dexamethasone, arglabin, cyclophosphamide, sarcolysin, methylnitrosourea, fluorouracil, 5-fluorouracil (5FU), vinblastine, camptothecin, actinomycin-D, mitomycin C, hydrogen peroxide, oxaliplatin, irinotecan, topotecan, leucovorin, carmustine, streptozocin, CPT-11, taxol, tamoxifen, dacarbazine, rituximab, daunorubicin, 1- ⁇ -D-arabinofuranosylcytosine, imatinib, fludarabine, docetaxel and FOLFO
  • This disclosure also encompasses methods of identifying an anti-lung cancer agent, comprising providing a test agent to a cell and measuring the level of at least one miR gene product in the cell.
  • the method may comprise providing a test agent to a cell and measuring the level of at least one miR gene product associated with decreased expression levels in lung cancer cells.
  • An increase in the level of the miR gene product in the cell, relative to a suitable control e.g., the level of the miR gene product in a control cell, is indicative of the test agent being an anti-lung cancer agent.
  • the at least one miR gene product may be associated with decreased expression levels in lung cancer cells is selected from the group consisting of miR-126*, miR-192, miR-224, miR-126, miR-30a-5p, miR-140, miR-9, miR-124a-1 miR-218-2, miR-95, miR-145, miR-198, miR-216, miR-219-1, miR-125a, miR-26a-1 miR-199b, let-7a-2, miR-27b, miR-32, miR-29b-2, miR-220, miR-33, miR-181c, miR-101-1, miR-124a-3, miR-125b-1, let-7f-1 and a combination thereof.
  • the miR gene product may not be one or more of let7a-2, let-7c, let-7g, let-7i, miR-7-2, miR-7-3, miR-9, miR-9-1, miR-10a, miR-15a, miR-15b, miR-16-1, miR-16-2, miR-17-5p, miR-20a, miR-21, miR-24-1, miR-24-2, miR-25, miR-29b-2, miR-30, miR-30a-5p, miR-30c, miR-30d, miR-31, miR-32, miR-34, miR-34a, miR-34a prec, miR-34a-1, miR-34a-2, miR-92-2, miR-96, miR-99a, miR-99b prec, miR-100, miR-103, miR-106a, miR-107, miR-123, miR-124a-1, miR-125b-1, miR-125b-2, miR-126*, miR-127
  • the method may comprises providing a test agent to a cell and measuring the level of at least one miR gene product associated with increased expression levels in lung cancer cells.
  • a decrease in the level of the miR gene product in the cell, relative to a suitable control is indicative of the test agent being an anti-lung cancer agent.
  • the at least one miR gene product associated with increased expression levels in lung cancer cells may be selected from the group consisting of miR-21, miR-191, miR-210, miR-155, miR-205, miR-24-2, miR-212, miR-214, miR-17-3p, miR-106a, miR-197, miR-192, miR-146, miR-203, miR-150 and a combination thereof.
  • the miR gene product may not be one or more of let7a-2, let-7c, let-7g, let-7i, miR-7-2, miR-7-3, miR-9, miR-9-1, miR-10a, miR-15a, miR-15b, miR-16-1, miR-16-2, miR-17-5p, miR-20a, miR-21, miR-24-1, miR-24-2, miR-25, miR-29b-2, miR-30, miR-30a-5p, miR-30c, miR-30d, miR-31, miR-32, miR-34, miR-34a, miR-34a prec, miR-34a-1 miR-34a-2, miR-92-2, miR-96, miR-99a, miR-99b prec, miR-100, miR-103, miR-106a, miR-107, miR-123, miR-124a-1, miR-125b-1, miR-125b-2, miR-126*, miR-127,
  • Suitable agents include, but are not limited to drugs (e.g., small molecules, peptides), and biological macromolecules (e.g., proteins, nucleic acids).
  • the agent can be produced recombinantly, synthetically, or it may be isolated (i.e., purified) from a natural source.
  • Various methods for providing such agents to a cell e.g., transfection
  • Methods for detecting the expression of at least one miR gene product e.g., Northern blotting, in situ hybridization, RT-PCR, expression profiling
  • Several of these methods are also described herein.
  • RNA from tissues was isolated by TRIzol ® Reagent (Invitrogen), according to the manufacturer's instructions.
  • RNA microarray analysis was performed as previously described ( Liu, C.G., et al., Proc. Natl. Acad. Sci. U.S.A. 101:9740-9744 (2004 )). Briefly, 5 ⁇ g of total RNA was hybridized with miRNA microarray chips containing 352 probes in triplicate. Specifically, these chips contain gene-specific 40-mer oligonucleotide probes, spotted by contacting technologies and covalently attached to a polymeric matrix, which were generated from 161 human miRNAs, 84 mouse miRNAs, miRNAs from three other species and tRNA.
  • microarrays were hybridized in 6X SSPE (0.9 M NaCl/60 mM NaH2PO4 ⁇ H2O/8 mM EDTA, pH 7.4)/30% formamide at 25°C for 18 hr, washed in 0.75X TNT (Tris ⁇ HCl/NaCl/Tween 20) at 37°C for 40 min, and processed using a method of direct detection of biotin-containing transcripts by streptavidin-Alexa647 conjugate (Molecular Probes, Carlsbad, CA). Processed slides were scanned using a PerkinElmer ScanArray XL5K Scanner, with the laser set to 635 nm, at Power 80 and PMT 70 setting, and a scan resolution of 10 ⁇ m.
  • the expression levels of mature miRNAs were measured by solution hybridization detection using the mir Vana TM miRNA Detection Kit (Ambion Inc., TX). Briefly. 1 ⁇ g total RNA was incubated with radiolabeled probes corresponding to these miRNAs. Following digestion to remove any probe that was not bound by target miRNA, the radiolabeled products were fractionated by denaturing polyacrylamide gel electrophoresis. Probes were prepared by 5' end labeling using T4 Polynucleotide Kinase with mir Vana TM Probe & Marker Kit (Ambion Inc.. TX), according to the manufacturer's instructions. Quantitative real-time PCR was performed as described ( Schmittgen et al.. Nucl. Acids Res.
  • RNA was reverse-transcribed to cDNA with gene-specific primers and Thermoscript, and the relative amount of each miRNA to tRNA for initiator methionine was determined, using the equation: 2 - dCT , where dC T C TmiRNA - C TU ⁇ 6 .
  • miRNA expression in 104 pairs of primary lung cancer and corresponding noncancerous lung tissues was analyzed to investigate the involvement of miRNAs in lung cancer. Comparisons of miRNA expression for several specific group pairs are listed in the Table 2. miRNAs, which were expressed differently in 5 phenotypical and histological classifications (Table 2), were identified.
  • hsa-mir-21 at FRA17B
  • hsa-mir-27b at FRA9D
  • hsa-mir-32 at FRA9E
  • many of these identified miRNAs are located at frequently deleted or amplified regions in several malignancies (Table 3).
  • hsa-mir-21 and hsa-mir-205 are located at the region amplified in lung cancer
  • hsa-mir-126* and hsa-mir-126 are at 9q34.3, a region deleted in lung cancer.
  • b FDR False discovery rate which is probability of significant genes by chance.
  • Real-time RT-PCR analysis of select precursor miRNAs was performed to validate the results from the microarray analysis.
  • cDNA from 16 pairs of lung adenocarcinoma, and 16 pairs of lung squamous cell carcinoma were prepared using gene-specific primers for hsa-mir-21, hsa-mir-126*, hsa-mir-205 and U6 (as a control).
  • real-time RT-PCR analyses were performed to determine the expression levels of these miRNAs in the different samples.
  • miRNAs differentially-expressed in adenocarcinoma tissues/squamous cell lung carcinoma tissues vs . noncancerous lung tissues.
  • the microarray data for the three precursor miRNAs, hsa-mir-21, hsa-mir-126 *, and hsa-mir-205 were confirmed for their mature miRNAs by solution hybridization detection method. Specifically, seven pairs of primary lung cancer tissues and corresponding noncancerous lung tissues, for which sufficient amounts of RNA were available, were analyzed. The mature forms of hsa-mir-21 and hsa-mir-205 were clearly up-regulated in lung cancer tissues when compared with the corresponding noncancerous lung tissues ( FIG. 2 ). while hsa-mir-126* was down-regulated in most of the lung cancer tissues examined. Therefore, like the RT-PCR results, these analyses confirmed the microarray expression data for these three miRNAs.
  • Example 2 Distinct miRNA expression signatures in human lung cancer cell lines
  • RNA from tissues and cultured cells was isolated by TRIzol ® Reagent (Invitrogen, Carlsbad, CA), according to the manufacturer's instructions.
  • Microarray analysis was performed as previously described ( Liu, C.G., et al., Proc. Natl. Acad. Sci. U.S.A. 101:9740-9744 (2004 ), see also, Example 1).
  • miRNA expression profiles may differ in cells with different origins and/or types, as was found in previous studies (see, e.g., Liu, C.G., et al., Proc. Natl. Acad. Sci. U.S.A. 101:9740-9744 (2004 ); Bhattacharjee, A., et al., Proc. Natl. Acad. Sci. U.S.A. 98:13790-13795 (2001 ); Garber, M.E., et al., Proc. Natl. Acad. Sci. U.S.A. 98:13784-13789 (2001 )).
  • Microarray analysis was performed as previously described ( Liu, C.G., et al., Proc. Natl. Acad. Sci. U.S.A. 101:9740-9744 (2004 ), see also, Example 1).
  • microarray data revealed specific molecular signatures for subsets of lung cancer that differ in clinical behavior was analyzed. For this analysis, the relationship of five types of clinical and pathological information were examined (Table 2). In the histological classification, six miRNAs ( hsa-mir-205, hsa-mir-99b, hsa-mir-203, hsa-mir-202, hsa-mir-102, and hsa-mir-204-prec ) that were expressed differently in the two most common histological types of NSCLC, adenocarcinoma and squamous cell carcinoma, were identified. The expression levels of hsa-mir-99b and hsa-mir-102 were higher in adenocarcinoma. No differentially-expressed miRNAs were identified for groups that were differentiated by age, gender, or race.
  • Example 4 Correlation between hsa-mir-155 and hsa - let - 7a - 2 expression and prognosis of patients with lung adenocarcinoma.
  • Microarray analysis was performed as previously described ( Liu, C.G., et al., Proc. Natl. Acad. Sci. U.S.A. 101:9740-9744 (2004 ), see also, Example 1).
  • Predicted targets of hsa - mir - 155 and hsa - let - 7a were determined by the methods of Lewis et al. , ( Lewis, B.P., et al., Cell 120: 15-20 (2005 )) and PicTar ( Krek, A., et al., Nat. Genet. 37: 495-500 (2005 )) and were analyzed with respect to the over-representation within particular Gene Ontology (GO) biological groupings.
  • GO term lists were subjected to analysis using the Whole Pathway Scope (WPS) application and those terms with Fisher Exact scores of less than 0.005 were listed.
  • WPS Whole Pathway Scope
  • Example 5 Lack of epigenetic regulation of miRNA expression in NSCLC cell lines.
  • Microarray analysis was performed as previously described ( Liu, C.G., et al., Proc. Natl. Acad. Sci. U.S.A. 101:9740-9744 (2004 ), see also, Example 1).
  • A549 and NCI-H157 lung cancer cells (available from the American Tissue Culture Collection) were incubated with medium containing 1.0 ⁇ M 5-aza-dC (Sigma, St. Louis, MO) for 48 hr, then were incubated for an additional 24 hr in the presence of 1.0 ⁇ M TSA (Sigma, St. Louis, MO).
  • Total RNA was isolated with TRIzol ® Reagent (Invitrogen), and microarray analysis was performed as described above. Each treatment was performed in triplicate.
  • miRNA microarrays were used to analyze the expression of various miRNAs upon treatment with 5-aza-2'-deoxycytidine (5-aza-dC), a DNA methylation inhibitor, and/or Trichostatin A (TSA), a potent histone deacteylase inhibitor, in two lung cancer cell lines (A549 and NCI-H157). Although increased expression of a gene that is known to be transcriptionally-silenced ( AYO18B) was confirmed following treatment with 5-aza-dC or TSA ( FIG. 12 ), no miRNAs from the microarray displayed statistically-significant changes in expression after treatment with either compound, suggesting that hypermethylation and histone deacetylation were not responsible for reduced levels of miRNA expression in at least these two cell lines.
  • 5-aza-2'-deoxycytidine 5-aza-dC
  • TSA Trichostatin A

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • Wood Science & Technology (AREA)
  • Genetics & Genomics (AREA)
  • Zoology (AREA)
  • Engineering & Computer Science (AREA)
  • Pathology (AREA)
  • Immunology (AREA)
  • General Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Biochemistry (AREA)
  • Physics & Mathematics (AREA)
  • General Engineering & Computer Science (AREA)
  • Hospice & Palliative Care (AREA)
  • Oncology (AREA)
  • General Chemical & Material Sciences (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Medicinal Chemistry (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • Pharmacology & Pharmacy (AREA)
  • Animal Behavior & Ethology (AREA)
  • Public Health (AREA)
  • Veterinary Medicine (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
  • Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)

Claims (2)

  1. Verfahren zum Diagnostizieren, ob eine Person Lungenkrebs hat, wobei das Verfahren Folgendes umfasst:
    Messen des Spiegels von miR-Genprodukten in einer Lungengewebe-Testprobe von der Person, wobei eine Veränderung des Spiegels der miR-Genprodukte in der Testprobe im Vergleich zu dem Spiegel von entsprechenden miR-Genprodukten in einer Kontrollprobe darauf hindeutet, dass die Person Lungenkrebs hat,
    wobei die miR-Genprodukte eine Gruppe von miR-Genprodukten umfassen, wobei die Gruppe aus miR-21, miR-205 und miR-126* besteht; und
    wobei der Spiegel der miR-21- und miR-205-Genprodukte in der Testprobe höher als der Spiegel der entsprechenden miR-Genprodukte in der Kontrollprobe ist und wobei der Spiegel der miR-126*-Genprodukte in der Testprobe niedriger als der Spiegel der entsprechenden miR-Genprodukte in der Kontrollprobe ist.
  2. Verfahren nach Anspruch 1, das weiterhin dadurch gekennzeichnet ist, dass es die folgenden Schritte umfasst:
    Umkehrtranskribieren von RNA aus einer Testprobe, die von der Person erhalten wurde, um einen Satz von Ziel-Oligodesoxynukleotiden bereitzustellen;
    Hybridisieren der Ziel-Oligodesoxynukleotide an ein Mikroarray, das miRNA-spezifische Sonden-Oligonukleotide umfasst, um ein Hybridisierungsprofil für die Testprobe bereitzustellen; und
    Vergleichen des Hybridisierungsprofils der Testprobe mit einem Hybridisierungsprofil, das aus einer Kontrollprobe erstellt wurde,
    wobei eine Veränderung des Signals der Gruppe von miRNA darauf hindeutet, dass die Person Lungenkrebs hat.
EP12165734.0A 2006-01-05 2007-01-03 Verfahren auf Mikro-RNA-Basis zur Diagnose, Prognose und Behandlung von Lungenkrebs Not-in-force EP2514433B1 (de)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US75640006P 2006-01-05 2006-01-05
EP07717734.3A EP1978986B1 (de) 2006-01-05 2007-01-03 Mikro-rna-basierte verfahren zur diagnose und prognose von lungenkrebs

Related Parent Applications (2)

Application Number Title Priority Date Filing Date
EP07717734.3A Division EP1978986B1 (de) 2006-01-05 2007-01-03 Mikro-rna-basierte verfahren zur diagnose und prognose von lungenkrebs
EP07717734.3 Division 2007-01-03

Publications (3)

Publication Number Publication Date
EP2514433A2 EP2514433A2 (de) 2012-10-24
EP2514433A3 EP2514433A3 (de) 2013-02-13
EP2514433B1 true EP2514433B1 (de) 2015-10-21

Family

ID=38256884

Family Applications (4)

Application Number Title Priority Date Filing Date
EP12165734.0A Not-in-force EP2514433B1 (de) 2006-01-05 2007-01-03 Verfahren auf Mikro-RNA-Basis zur Diagnose, Prognose und Behandlung von Lungenkrebs
EP07717734.3A Not-in-force EP1978986B1 (de) 2006-01-05 2007-01-03 Mikro-rna-basierte verfahren zur diagnose und prognose von lungenkrebs
EP12165740.7A Not-in-force EP2514434B1 (de) 2006-01-05 2007-01-03 Verfahren auf Mikro-RNA-Basis zur Diagnose, Prognose und Behandlung von Lungenkrebs
EP12165748.0A Not-in-force EP2502630B1 (de) 2006-01-05 2007-01-03 Verfahren und Zusammensetzungen auf Mikro-RNA-Basis zur Diagnose, Prognose und Behandlung von Lungenkrebs

Family Applications After (3)

Application Number Title Priority Date Filing Date
EP07717734.3A Not-in-force EP1978986B1 (de) 2006-01-05 2007-01-03 Mikro-rna-basierte verfahren zur diagnose und prognose von lungenkrebs
EP12165740.7A Not-in-force EP2514434B1 (de) 2006-01-05 2007-01-03 Verfahren auf Mikro-RNA-Basis zur Diagnose, Prognose und Behandlung von Lungenkrebs
EP12165748.0A Not-in-force EP2502630B1 (de) 2006-01-05 2007-01-03 Verfahren und Zusammensetzungen auf Mikro-RNA-Basis zur Diagnose, Prognose und Behandlung von Lungenkrebs

Country Status (8)

Country Link
US (3) US7943318B2 (de)
EP (4) EP2514433B1 (de)
JP (1) JP5451077B2 (de)
CN (3) CN103993082B (de)
AU (1) AU2007205234B2 (de)
CA (1) CA2633674A1 (de)
ES (4) ES2553442T3 (de)
WO (1) WO2007081720A2 (de)

Families Citing this family (152)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP1713938A2 (de) 2004-02-09 2006-10-25 Thomas Jefferson University Diagnose und behandlung von krebserkrankungen mit oder nahe mit krebs in zusammenhang stehenden chromosomalen merkmalen lokalisierter microrna
EP1771563A2 (de) 2004-05-28 2007-04-11 Ambion, Inc. VERFAHREN UND ZUSAMMENSETZUNGEN MIT MicroRNA
ES2534304T3 (es) * 2004-11-12 2015-04-21 Asuragen, Inc. Procedimientos y composiciones que implican miARN y moléculas inhibidoras de miARN
EP1937845B1 (de) 2005-08-01 2015-06-10 The Ohio State University Research Foundation Verfahren und zusammensetzungen auf mikro-rna-basis zur diagnose, prognose und behandlung von brustkrebs
ES2523989T3 (es) 2005-09-12 2014-12-03 The Ohio State University Research Foundation Composiciones para la terapia de cánceres asociados con BCL2
EP2479285B1 (de) 2006-01-05 2014-05-14 The Ohio State University Research Foundation Verfahren und Zusammensetzungen auf Mikro-RNA-Basis zur Diagnose und Behandlung von festen Krebsen
EP2586455B1 (de) 2006-01-05 2014-06-25 The Ohio State University Research Foundation Anomalien bei Mikro-RNA-Expressionen in endokrinen und azinösen Pankreastumoren
AU2007205234B2 (en) 2006-01-05 2012-07-12 The Ohio State University Research Foundation MicroRNA-based methods and compositions for the diagnosis, prognosis and treatment of lung cancer
EP1996731A2 (de) * 2006-03-20 2008-12-03 The Ohio State University Research Foundation Mikrorna-fingerabdrücke während humaner megakaryozytopoiese
US8207325B2 (en) * 2006-04-03 2012-06-26 Univ. of Copenhagen MicroRNA biomarkers for human breast and lung cancer
EP2455493B1 (de) 2006-07-13 2014-01-08 The Ohio State University Research Foundation Verfahren und Zusammensetzungen auf Mikro-RNA-Basis zur Diagnose und Behandlung von Krankheiten im Zusammenhang mit dem Dickdarm
WO2008097277A2 (en) 2006-09-19 2008-08-14 The Ohio State University Research Foundation Tcl1 expression in chronic lymphocytic leukemia (cll) regulated by mir-29 and mir-181
EP2487240B1 (de) * 2006-09-19 2016-11-16 Interpace Diagnostics, LLC Mikro-RNA, die differentiell in Pankreaserkrankungen exprimiert sind, und ihre Verwendung
JP5501766B2 (ja) 2006-11-01 2014-05-28 ジ・オハイオ・ステイト・ユニバーシティ・リサーチ・ファウンデイション 肝細胞癌における生存および転移を予測するためのマイクロｒｎａ発現サイン
US8338109B2 (en) 2006-11-02 2012-12-25 Mayo Foundation For Medical Education And Research Predicting cancer outcome
CA2674895A1 (en) 2007-01-31 2008-08-07 The Ohio State University Research Foundation Microrna-based methods and compositions for the diagnosis, prognosis and treatment of acute myeloid leukemia (aml)
EP2481805A3 (de) * 2007-04-30 2012-10-24 The Ohio State University Research Foundation Verfahren zur Unterscheidung von Bauchspeicheldrüsenkrebs von normalen Bauchspeicheldrüsenfunktionen und chronischer Bauchspeicheldrüsenentzündung
CN101711287B (zh) 2007-06-08 2016-04-27 由卫生与公众服务部代表的美利坚合众国政府 确定肝细胞癌亚型和检测肝癌干细胞的方法
CN101918424A (zh) 2007-06-15 2010-12-15 俄亥俄州立大学研究基金会 用于靶向由Drosha介导的微小RNA加工的致癌ALL-1融合蛋白
CN101809169B (zh) * 2007-07-31 2013-07-17 俄亥俄州立大学研究基金会 通过靶向dnmt3a和dnmt3b恢复甲基化的方法
CN101883576B (zh) 2007-07-31 2015-08-19 得克萨斯系统大学董事会 调控纤维化的微小rna家族及其用途
EP2653561B1 (de) 2007-08-03 2016-03-02 The Ohio State University Research Foundation Ultrakonservierte Bereiche zur Codierung von ncRNA
EP2188395A4 (de) * 2007-08-17 2010-10-13 Catalyst Assets Llc Diagnostische und prognostische verwendung von mit menschlichem blasenkrebs assoziierten mikro-rnas
JP5770472B2 (ja) 2007-08-22 2015-08-26 ジ・オハイオ・ステイト・ユニバーシティ・リサーチ・ファウンデイションＴｈｅ Ｏｈｉｏ Ｓｔａｔｅ Ｕｎｉｖｅｒｓｉｔｙ Ｒｅｓｅａｒｃｈ Ｆｏｕｎｄａｔｉｏｎ ヒト急性白血病におけるｅｐｈａ７及びｅｒｋリン酸化の調節解除を誘発するための方法及び組成物
WO2009024790A1 (en) * 2007-08-23 2009-02-26 Isis Innovation Limited Method and kit for the prognosis of cancer by determining the level of mirna-210
WO2009036332A1 (en) 2007-09-14 2009-03-19 Asuragen, Inc. Micrornas differentially expressed in cervical cancer and uses thereof
EP2208499A4 (de) * 2007-10-03 2011-12-28 Kyowa Hakko Kirin Co Ltd Nukleinsäure zur regulierung der zellproliferation
JP5723156B2 (ja) * 2007-10-11 2015-05-27 ジ・オハイオ・ステイト・ユニバーシティ・リサーチ・ファウンデイションＴｈｅ Ｏｈｉｏ Ｓｔａｔｅ Ｕｎｉｖｅｒｓｉｔｙ Ｒｅｓｅａｒｃｈ Ｆｏｕｎｄａｔｉｏｎ 食道腺癌の診断及び治療のための方法及び組成物
US20090186015A1 (en) * 2007-10-18 2009-07-23 Latham Gary J Micrornas differentially expressed in lung diseases and uses thereof
WO2009055773A2 (en) 2007-10-26 2009-04-30 The Ohio State University Research Foundation Methods for identifying fragile histidine triad (fhit) interaction and uses thereof
CA2704062A1 (en) * 2007-10-30 2009-05-07 Veridex, Llc Process for predicting the prognosis of squamous cell lung cancer
EP2225396A4 (de) * 2007-11-30 2011-03-02 Univ Ohio State Res Found Mikro-rna-expressionsprofilerstellung und abzielen darauf in peripherem blut bei lungenkrebs
WO2009070805A2 (en) 2007-12-01 2009-06-04 Asuragen, Inc. Mir-124 regulated genes and pathways as targets for therapeutic intervention
JP5116026B2 (ja) * 2008-01-23 2013-01-09 富士フイルム株式会社 癌の検出方法および癌抑制剤
JP2011511634A (ja) * 2008-02-01 2011-04-14 ザ ボード オブ トラスティーズ オブ ザ リランド スタンフォード ジュニア ユニヴァーシティ ガン幹細胞に関連する方法および組成物
EP2257647B1 (de) * 2008-02-28 2016-09-14 The Ohio State University Research Foundation Auf micro-rna beruhende verfahren und zusammensetzungen zur diagnose von magenkrebs
EP2990487A1 (de) 2008-05-08 2016-03-02 Asuragen, INC. Zusammensetzungen und verfahren in zusammenhang mit der mirna-modulation von neovaskularisation oder angiogenese
EP2806054A1 (de) 2008-05-28 2014-11-26 Genomedx Biosciences Inc. Systeme und Verfahren zur expressionsbasierten Unterscheidung verschiedener klinischer Krankheitszustände bei Prostatakrebs
US10407731B2 (en) 2008-05-30 2019-09-10 Mayo Foundation For Medical Education And Research Biomarker panels for predicting prostate cancer outcomes
WO2009147658A2 (en) * 2008-06-02 2009-12-10 New York University Compositions and methods for diagnosis, prognosis and treatment of mesothelioma
EP2300017A4 (de) * 2008-06-05 2012-12-12 Univ New York State Res Found Mirnas als therapeutische targets bei krebs
EP2307028B1 (de) 2008-06-11 2013-10-02 The Government of the United States of America as represented by The Secretary of the Department of Health and Human Services Verwendung der mir-26-familie als prädiktiver marker für hepatozelluläres karzinom und des ansprechens auf die therapie
WO2009153775A2 (en) * 2008-06-17 2009-12-23 Rosetta Genomics Ltd. Methods for distinguishing between specific types of lung cancers
EP2145964A1 (de) * 2008-07-17 2010-01-20 Universität Zu Köln Verfahren zur Früherkennung und Prognose von Lungenkrebs
EP2358912B1 (de) * 2008-10-30 2016-10-12 Caris Life Sciences Switzerland Holdings GmbH Verfahren zur untersuchung von rna-mustern
GB2463401B (en) * 2008-11-12 2014-01-29 Caris Life Sciences Luxembourg Holdings S A R L Characterizing prostate disorders by analysis of microvesicles
CN101475984A (zh) * 2008-12-15 2009-07-08 江苏命码生物科技有限公司 一种非小细胞肺癌检测标记物及其检测方法、相关生物芯片和试剂盒
US20100240049A1 (en) 2009-01-16 2010-09-23 Cepheid Methods of Detecting Cervical Cancer
JP2012515532A (ja) 2009-01-20 2012-07-12 ラモット アット テル アビブ ユニバーシティ， リミテッド Ｍｉｒ−２１プロモーター駆動性標的がん治療
WO2010093907A2 (en) * 2009-02-13 2010-08-19 The Board Of Regents Of The University Of Texas System An assay for the detection of recurrence in breast cancer using the novel tumor suppressor dear1
CN102272330B (zh) * 2009-02-23 2014-04-23 博奥生物有限公司 用于肺癌诊断、预后和提高生存率的试剂盒
EP2401406A4 (de) * 2009-02-25 2012-09-19 Cepheid Verfahren für den nachweis von lungenkrebs
EP2401405A4 (de) * 2009-02-26 2013-10-16 Univ Ohio State Res Found Mikro-rnas bei niemalsrauchern sowie entsprechende materialien und verfahren
IT1398768B1 (it) * 2009-03-24 2013-03-18 Zollo Uso di microrna-199b-5p in campo medico e diagnostico.
JP2012522508A (ja) 2009-03-31 2012-09-27 ザ ユナイテッド ステイツ オブ アメリカ， アズ リプレゼンテッド バイ ザ セクレタリー， デパートメント オブ ヘルス アンド ヒューマン サービシーズ シェーグレン症候群の診断および治療のためのバイオマーカーとしての示差的に発現されるマイクロｒｎａ
US20110105585A1 (en) * 2009-04-23 2011-05-05 Northwestern University METHODS FOR DIAGNOSING AND TREATING SQUAMOUS CELL CARCINOMA UTILIZING miRNA-205 AND INHIBITORS THEREOF
EP2336353A1 (de) * 2009-12-17 2011-06-22 febit holding GmbH miRNA-Fingerabdrücke bei der Diagnose von Krankheiten
WO2011003237A1 (zh) * 2009-07-09 2011-01-13 中国医学科学院肿瘤研究所 两个microRNA分子在肺癌预后及药物制备中的用途
PL212748B1 (pl) * 2009-07-30 2012-11-30 Gdanski Univ Medyczny Sposób okreslania ryzyka odleglego nawrotu niedrobnokomórkowego raka pluca u chorych w stopniu I-III A zaawansowania leczonych chirurgicznie
EP2460005A4 (de) * 2009-07-31 2012-11-21 Translational Genomics Res Inst Verfahren zur beurteilung eines krebsprogressionsrisikos
WO2011025919A1 (en) * 2009-08-28 2011-03-03 Asuragen, Inc. Mirna biomarkers of lung disease
CN102018963B (zh) * 2009-09-11 2013-03-13 中国科学院上海生命科学研究院 调节RANTES表达的miR-125a、其组合物及其用途
JP5812491B2 (ja) * 2009-10-01 2015-11-11 国立研究開発法人国立がん研究センター 腫瘍治療剤
US20120219632A1 (en) * 2009-11-02 2012-08-30 Agency For Science, Technology And Research Methods for monitoring cellular states and for immortalizing mesenchymal stem cell
CN102803511A (zh) 2009-11-23 2012-11-28 俄亥俄州立大学 用于影响肿瘤细胞生长、迁移和侵袭的材料和方法
CN102080083B (zh) * 2009-12-01 2013-02-27 中国科学院上海药物研究所 人miR-149反义核酸及其应用
WO2011084815A1 (en) * 2009-12-21 2011-07-14 Board Of Trustees Of Southern Illinois University Inhibition of ubc9-mediated cancer cell invasion and metastasis
WO2011076145A1 (en) * 2009-12-24 2011-06-30 Fudan University Tissue-based micro-rna methods for diagnosis of different subtypes of lung cancer
CN102782155B (zh) * 2009-12-24 2016-05-04 复旦大学 用于肺癌的血浆中微rna表达谱分析的组合物和方法
CN102770561B (zh) * 2009-12-24 2015-05-06 复旦大学 用于诊断不同亚型肺癌的基于组织的微-rna方法
KR20130056855A (ko) 2010-03-01 2013-05-30 카리스 라이프 사이언스 룩셈부르크 홀딩스 치료진단용 생물학적 지표들
WO2011115884A1 (en) * 2010-03-18 2011-09-22 Centocor Ortho Biotech Inc. Diagnostic for lung cancer using mirna
WO2011119553A1 (en) * 2010-03-26 2011-09-29 The Ohio State University Materials and methods related to modulation of mismatch repair and genomic stability by mir-155
JPWO2011125245A1 (ja) * 2010-04-05 2013-07-08 公益財団法人がん研究会 ｍｉＲＮＡを用いた小細胞肺癌の予後予測方法、小細胞肺癌治療方法、小細胞肺癌予後改善方法、及び小細胞肺癌治療剤のスクリーニング方法
AU2011237669B2 (en) 2010-04-06 2016-09-08 Caris Life Sciences Switzerland Holdings Gmbh Circulating biomarkers for disease
WO2011150855A1 (en) * 2010-06-04 2011-12-08 Fudan University Micro-rna biomarkers and methods for diagnosis of early colorectal carcinoma and high-grade adenoma
WO2011156777A1 (en) 2010-06-10 2011-12-15 Fred Hutchinson Cancer Research Center Use of blood mir-210 for cancer prognosis
CA2804599C (en) 2010-07-06 2023-01-31 Interna Technologies Bv Mirna and its diagnostic and therapeutic uses in diseases or conditions associated with melanoma, or in diseases or conditions associated with activated braf pathway
US9006201B2 (en) 2010-07-08 2015-04-14 Takeda Pharmaceutical Company Limited Prophylactic or therapeutic agent for diabetes
JP5931897B2 (ja) 2010-11-12 2016-06-08 ジ・オハイオ・ステイト・ユニバーシティ・リサーチ・ファウンデイションＴｈｅ Ｏｈｉｏ Ｓｔａｔｅ Ｕｎｉｖｅｒｓｉｔｙ Ｒｅｓｅａｒｃｈ Ｆｏｕｎｄａｔｉｏｎ マイクロｒｎａ−２１、ミスマッチ修復および結腸直腸癌に関連する物質および方法
US10758619B2 (en) 2010-11-15 2020-09-01 The Ohio State University Controlled release mucoadhesive systems
EP2505663A1 (de) 2011-03-30 2012-10-03 IFOM Fondazione Istituto Firc di Oncologia Molecolare Verfahren zur Identifizierung von symptomlosen Risikopatienten mit Lungenkrebs im Frühstadium durch die Erkennung von miRNAs in biologischen Flüssigkeiten
CN102140466B (zh) * 2010-12-30 2013-03-27 苏州吉玛基因股份有限公司 人miR-1825反义核酸及其应用
CN102140467B (zh) * 2010-12-30 2013-05-15 苏州吉玛基因股份有限公司 人miR-365反义核酸及其应用
EP2474617A1 (de) 2011-01-11 2012-07-11 InteRNA Technologies BV MIR zur Behandlung von Neoangiogenese
WO2012097047A1 (en) * 2011-01-11 2012-07-19 The Ohio State University Research Foundation Methods to identify chronic lymphocytic leukemia disease progression
CN102586412B (zh) * 2011-01-18 2015-05-20 上海市第一人民医院 一种MicroRNA特异表达谱及其应用
EP2668295A4 (de) 2011-01-26 2016-01-13 Cepheid Verfahren für den nachweis von lungenkrebs
AU2012212105A1 (en) 2011-02-03 2013-09-12 Mirna Therapeutics, Inc. Synthetic mimics of miR-124
IT1403685B1 (it) * 2011-02-07 2013-10-31 Fond Irccs Istituto Naz Dei Tumori Procedimento ed apparecchiatura per identificare individui a rischio di tumore polmonare e/o per diagnosticare un tumore polmonare, nonche' composizione e metodo per ridurre o eliminare il rischio di tumore polmonare.
IT1406866B1 (it) * 2011-02-07 2014-03-14 Fond Irccs Istituto Naz Dei Tumori Procedimento ed apparecchiatura per identificare individui a rischio di tumore polmonare e/o per diagnosticare un tumore polmonare, nonché composizione e metodo per ridurre o eliminare il rischio di tumore polmonare
EP2734636B1 (de) 2011-02-07 2019-05-22 Gabriella Sozzi Mikro-rna-biomarker zur identifizierung des risikos und/oder zur diagnose von lungentumor
US8664192B2 (en) 2011-03-07 2014-03-04 The Ohio State University Mutator activity induced by microRNA-155 (miR-155) links inflammation and cancer
EP2691545B1 (de) * 2011-03-28 2017-06-14 Rosetta Genomics Ltd Verfahren zur klassifizierung von lungenkrebs
WO2013040251A2 (en) 2011-09-13 2013-03-21 Asurgen, Inc. Methods and compositions involving mir-135b for distinguishing pancreatic cancer from benign pancreatic disease
AU2012323924A1 (en) 2011-10-14 2014-05-29 The Ohio State University Methods and materials related to ovarian cancer
WO2013090556A1 (en) 2011-12-13 2013-06-20 The Ohio State University Methods and compositions related to mir-21 and mir-29a, exosome inhibition, and cancer metastasis
US10513737B2 (en) 2011-12-13 2019-12-24 Decipher Biosciences, Inc. Cancer diagnostics using non-coding transcripts
CN102533983A (zh) * 2011-12-19 2012-07-04 苏州福英基因科技有限公司 癌症病理演变前期microrna-330水平原位杂交检测试剂盒及检测方法和应用
CN102533984A (zh) * 2011-12-19 2012-07-04 苏州福英基因科技有限公司 癌症病理演变前期microrna17-3p水平原位杂交检测试剂盒及检测方法和应用
ITRM20110685A1 (it) 2011-12-23 2013-06-24 Internat Ct For Genetic En Gineering And Microrna per la rigenerazione cardiaca attraverso l induzione della proliferazione dei miociti cardiaci
CN102559884A (zh) * 2011-12-27 2012-07-11 芮屈生物技术（上海）有限公司 各种癌症病理演变前期let-7mirna水平原位杂交检测试剂盒及检测方法和应用
WO2013110053A1 (en) 2012-01-20 2013-07-25 The Ohio State University Breast cancer biomarker signatures for invasiveness and prognosis
CN102776194A (zh) * 2012-07-20 2012-11-14 苏州大学 微小rna用于调控pten基因表达
US10196662B2 (en) * 2012-08-10 2019-02-05 Mello Biotechnology, Inc. Composition for producing microRNA precursors as drugs for enhancing wound healing and production method of the microRNA precursors
DK3435084T3 (da) 2012-08-16 2023-05-30 Mayo Found Medical Education & Res Prostatakræftprognose under anvendelse af biomarkører
KR101501826B1 (ko) * 2013-04-05 2015-03-13 연세대학교 산학협력단 위암에 대한 예후 예측 모형의 제조방법
CN103285406B (zh) * 2013-05-27 2015-05-13 哈尔滨医科大学 microRNA-203及其拟似物在制备防治肥胖、血脂异常及其并发症药物中的应用
CN103751801A (zh) * 2013-09-10 2014-04-30 上海大学 非小细胞肺癌中miR-143基因的应用
PL405648A1 (pl) 2013-10-15 2015-04-27 Warszawski Uniwersytet Medyczny Sposób diagnozowania raka watrobowokomórkowego, zastosowanie markera mikroRNA do diagnozowania zmiany chorobowej w obrębie wątroby, oceny stopnia zaawansowania choroby oraz oceny podatności pacjenta i/lub choroby na zaproponowane leczenie oraz zawierający takie markery zestaw diagnostyczny
PL406033A1 (pl) 2013-11-14 2015-05-25 Warszawski Uniwersytet Medyczny Sposób diagnozowania raka brodawkowatego tarczycy, zastosowanie markera mikroRNA do diagnozowania nowotworu tarczycy, oceny stopnia zaawansowania choroby oraz oceny podatności pacjenta i/lub choroby na zaproponowane leczenie oraz zawierający takie markery zestaw diagnostyczny
CN103948926A (zh) * 2014-03-24 2014-07-30 江苏大学 miR-9抑制剂在制备用于抑制肿瘤生长药物中的用途
CN104031987B (zh) * 2014-05-12 2016-08-31 贵州省人民医院 miRNA在心肌纤维化疾病治疗中的应用
JP6991433B2 (ja) 2014-06-18 2022-01-12 東レ株式会社 肺がんの検出キット又はデバイス及び検出方法
CN104152452B (zh) * 2014-08-19 2016-08-24 中国人民解放军总医院第一附属医院 一种与肝癌相关的血液miRNA标志物及其应用
US20160070852A1 (en) * 2014-09-04 2016-03-10 National Taiwan University Prognosis prediction for acute myeloid leukemia by a 3-microrna scoring method
CN104911248A (zh) * 2014-12-18 2015-09-16 南京大学 一种用于ii、iii期结直肠癌诊断及预后的微小核糖核酸组合及其应用
CN104726448B (zh) * 2014-12-29 2018-03-30 常州杰傲病理诊断技术有限公司 一种用于肺癌组织分型的miRNA标志物及应用
MX2017014859A (es) * 2015-05-19 2018-07-06 Wistar Inst Metodos y composiciones para diagnosticar o detectar canceres de pulmon.
RU2718534C2 (ru) 2015-06-05 2020-04-08 Мираджен Терапьютикс, Инк. Ингибиторы mir-155 для лечения кожной t-клеточной лимфомы (ctcl)
CN105457041B (zh) * 2015-12-09 2020-09-08 上海大学 miR-26a在非小细胞肺癌中的应用
CN105561339B (zh) * 2015-12-21 2019-02-22 江苏省人民医院 一种miRNA的组合制备抗非小细胞肺癌药物中的应用
CN105726559B (zh) * 2016-03-21 2018-12-18 南通大学 miRNA-17-3p和miRNA-19b-1组合物及其应用
ES2646826B1 (es) * 2016-05-13 2018-10-01 Servicio Andaluz De Salud MicroARNs como biomarcadores para el diagnóstico del cáncer de pulmón
CN109563510A (zh) * 2016-05-27 2019-04-02 林希龙 使用mir-302前驱体作为抗癌药物用于治疗人类肺癌的组合物及方法
CN106055921A (zh) * 2016-05-27 2016-10-26 华中农业大学 基于基因表达和药物靶标的药物活性预测与筛选方法
SG11201810670VA (en) 2016-06-14 2018-12-28 Agency Science Tech & Res Use of mi r-198 in treating and diagnosing cutaneous squamous cell carcinoma
CN105950753B (zh) * 2016-06-16 2019-10-01 朱伟 一种与肺腺癌辅助诊断相关的血浆miRNA标志物及其应用
KR101888744B1 (ko) 2016-08-02 2018-10-04 연세대학교 산학협력단 Alk 저해제에 내성을 획득한 eml4-alk 양성 비소세포폐암의 치료를 위한 약물 선택의 정보 제공 방법
EP3504348B1 (de) 2016-08-24 2022-12-14 Decipher Biosciences, Inc. Verwendung von genomischen signaturen zur vorhersage des ansprechens von patienten mit prostatakrebs auf postoperative strahlentherapie
US10738363B2 (en) 2016-08-31 2020-08-11 National Central University Analyzer and analytical method for predicting prognosis of cancer radiotherapy
JP7130639B2 (ja) 2016-11-01 2022-09-05 ザ・リサーチ・ファウンデーション・フォー・ザ・ステイト・ユニヴァーシティ・オブ・ニューヨーク ５－ハロウラシル修飾マイクロｒｎａ及びがんの処置におけるその使用
WO2018096060A1 (en) * 2016-11-25 2018-05-31 Centre National De La Recherche Scientifique Agents for the treatment of patients with nsclc and methods to predict response
CN107058480B (zh) * 2016-12-14 2018-07-13 河北医科大学第四医院（河北省肿瘤医院） 用于诊断肺腺癌的长链非编码rna标志物
US11208697B2 (en) 2017-01-20 2021-12-28 Decipher Biosciences, Inc. Molecular subtyping, prognosis, and treatment of bladder cancer
US10314855B2 (en) 2017-01-23 2019-06-11 Trustees Of Boston University Methods relating to lung cancer
CN106755521B (zh) * 2017-02-20 2019-03-08 南京盖斯夫医药科技有限公司 血浆microRNAs用于制备筛查诊断女性群体中肺腺癌患者的诊断试剂的用途
US11873532B2 (en) 2017-03-09 2024-01-16 Decipher Biosciences, Inc. Subtyping prostate cancer to predict response to hormone therapy
WO2018205035A1 (en) 2017-05-12 2018-11-15 Genomedx Biosciences, Inc Genetic signatures to predict prostate cancer metastasis and identify tumor agressiveness
CN110799648B (zh) 2017-06-29 2024-03-22 东丽株式会社 用于检测肺癌的试剂盒、装置和方法
CN113604564A (zh) * 2017-08-14 2021-11-05 江苏为真生物医药技术股份有限公司 一种检测外泌体相关microRNA分子的方法
CN107475388B (zh) * 2017-08-22 2020-05-19 深圳市恩普电子技术有限公司 鼻咽癌相关的miRNA作为生物标志物的应用及鼻咽癌检测试剂盒
CN108096266A (zh) * 2017-11-30 2018-06-01 佛山英特医药科技有限公司 miRNA-370在抗肿瘤作用、实施方法及用途
CN108841962B (zh) * 2018-08-01 2021-11-19 博奥生物集团有限公司 一种非小细胞肺癌检测试剂盒及其应用
CN109207599A (zh) * 2018-11-12 2019-01-15 觅瑞（杭州）生物科技有限公司 一种用于非小细胞肺癌诊断的外周血miRNA标志物
JP2020092688A (ja) * 2018-12-12 2020-06-18 国立大学法人東海国立大学機構 マイクロｒｎａを含む体液抽出物
CN109385478B (zh) * 2018-12-20 2021-08-03 首都医科大学附属北京朝阳医院 检测19-gcs的基因标记在制备用于诊断早期肺腺癌预后的产品中的应用
CN111218513B (zh) * 2020-04-24 2020-08-14 上海思路迪医学检验所有限公司 一种用于肺癌早期诊断的外周血胞外囊泡microRNA生物标志物及其用途
JPWO2023074135A1 (de) * 2021-11-01 2023-05-04
CN116585342B (zh) * 2023-05-23 2024-08-16 源生生物科技(青岛)有限责任公司 包含miRNA的活性成分及其应用
CN117286252B (zh) * 2023-11-16 2024-04-09 上海交通大学医学院 一种诊断和预后评估肺癌的生物标志物组合及其应用
CN118236389B (zh) * 2024-05-28 2024-09-24 南京晖丽生物科技有限公司 miR-3120在制备预防及治疗肿瘤及肿瘤恶液质的药物组合物中的应用

Family Cites Families (172)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4196265A (en) 1977-06-15 1980-04-01 The Wistar Institute Method of producing antibodies
US4235871A (en) 1978-02-24 1980-11-25 Papahadjopoulos Demetrios P Method of encapsulating biologically active materials in lipid vesicles
US4172124A (en) 1978-04-28 1979-10-23 The Wistar Institute Method of producing tumor antibodies
US4608337A (en) 1980-11-07 1986-08-26 The Wistar Institute Human hybridomas and the production of human monoclonal antibodies by human hybridomas
US4501728A (en) 1983-01-06 1985-02-26 Technology Unlimited, Inc. Masking of liposomes from RES recognition
US5019369A (en) 1984-10-22 1991-05-28 Vestar, Inc. Method of targeting tumors in humans
US4701409A (en) 1984-11-15 1987-10-20 The Wistar Institute Detection of B-cell neoplasms
US4693975A (en) 1984-11-20 1987-09-15 The Wistar Institute Human hybridroma fusion partner for production of human monoclonal antibodies
US5139941A (en) 1985-10-31 1992-08-18 University Of Florida Research Foundation, Inc. AAV transduction vectors
US5015568A (en) 1986-07-09 1991-05-14 The Wistar Institute Diagnostic methods for detecting lymphomas in humans
US5202429A (en) 1986-07-09 1993-04-13 The Wistar Institute DNA molecules having human BCL-2 gene sequences
US4987071A (en) 1986-12-03 1991-01-22 University Patents, Inc. RNA ribozyme polymerases, dephosphorylases, restriction endoribonucleases and methods
US4712124A (en) * 1986-12-22 1987-12-08 North American Philips Corporation Complementary lateral insulated gate rectifiers with matched "on" resistances
US4920016A (en) 1986-12-24 1990-04-24 Linear Technology, Inc. Liposomes with enhanced circulation time
US4837028A (en) 1986-12-24 1989-06-06 Liposome Technology, Inc. Liposomes with enhanced circulation time
ATE120497T1 (de) 1988-05-09 1995-04-15 Univ Temple Verfahren zur voraussage der wirksamkeit einer antineoplastichen behandlung bei einzelnen patienten.
US5198338A (en) 1989-05-31 1993-03-30 Temple University Molecular probing for human t-cell leukemia and lymphoma
US5149628A (en) 1989-11-15 1992-09-22 Temple University Methods for detecting bcl-3 gene in human leukemias
US5252479A (en) 1991-11-08 1993-10-12 Research Corporation Technologies, Inc. Safe vector for gene therapy
US6040140A (en) 1991-12-11 2000-03-21 Thomas Jefferson University Methods for screening and treating leukemias resulting from all-1 region chromosome abnormalities
US5633135A (en) 1991-12-11 1997-05-27 Thomas Jefferson University Chimeric nucleic acids and proteins resulting from ALL-1 region chromosome abnormalities
WO1993012136A1 (en) 1991-12-11 1993-06-24 Thomas Jefferson University Detection and treatment of acute leukemias resulting from chromosome abnormalities in the all-1 region
US5587308A (en) 1992-06-02 1996-12-24 The United States Of America As Represented By The Department Of Health & Human Services Modified adeno-associated virus vector capable of expression from a novel promoter
US5674682A (en) 1992-10-29 1997-10-07 Thomas Jefferson University Nucleic acid primers for detecting micrometastasis of prostate cancer
CA2148350A1 (en) 1992-10-29 1994-05-11 Carlo Croce Methods of detecting micrometastasis of prostate cancer
US5478745A (en) 1992-12-04 1995-12-26 University Of Pittsburgh Recombinant viral vector system
US5985598A (en) 1994-10-27 1999-11-16 Thomas Jefferson University TCL-1 gene and protein and related methods and compositions
US7175995B1 (en) 1994-10-27 2007-02-13 Thomas Jefferson University TCL-1 protein and related methods
US5695944A (en) 1995-05-05 1997-12-09 Thomas Jefferson University Modulation of bcl-2 phosphorylation
US5567586A (en) 1995-05-18 1996-10-22 Thomas Jefferson University Methods of indentifying solid tumors with chromosome abnormalities in the ALL-1 region
US5928884A (en) 1996-02-09 1999-07-27 Croce; Carlo M. FHIT proteins and nucleic acids and methods based thereon
US6242212B1 (en) 1996-02-09 2001-06-05 Thomas Jefferson University Fragile histidine triad (FHIT) nucleic acids and methods of producing FHIT proteins
US5849902A (en) 1996-09-26 1998-12-15 Oligos Etc. Inc. Three component chimeric antisense oligonucleotides
WO1998035707A1 (en) 1997-02-18 1998-08-20 Thomas Jefferson University Compositions that bind to pancreatic cancer cells and methods of using the same
EP0972083A1 (de) 1997-04-04 2000-01-19 THE TEXAS A&M UNIVERSITY SYSTEM Nachweis von dickdarm-biomarkern ohne chirurgischen eingriff durch verwendung von fäkaler mrna
CA2335315A1 (en) 1998-07-20 2000-01-27 Thomas Jefferson University Nitrilase homologs
US6255293B1 (en) 1998-07-24 2001-07-03 Yeda Research And Development Co., Ltd. Prevention of metastasis with 5-aza-2′-deoxycytidine
US7141417B1 (en) 1999-02-25 2006-11-28 Thomas Jefferson University Compositions, kits, and methods relating to the human FEZ1 gene, a novel tumor suppressor gene
CA2367906A1 (en) 1999-03-15 2000-09-21 Thomas Jefferson University Tcl-1b gene and protein and related methods and compositions
US7163801B2 (en) 1999-09-01 2007-01-16 The Burnham Institute Methods for determining the prognosis for cancer patients using tucan
SE0000522D0 (sv) * 2000-02-17 2000-02-17 Astrazeneca Ab Mixing apparatus
US6891031B2 (en) 2000-02-18 2005-05-10 The Regents Of The University Of California Coordinate cytokine regulatory sequences
WO2001068666A1 (en) 2000-03-14 2001-09-20 Thomas Jefferson University Tcl1 enhances akt kinase activity and mediates its nuclear translocation
DK1309726T4 (en) 2000-03-30 2019-01-28 Whitehead Inst Biomedical Res RNA Sequence-Specific Mediators of RNA Interference
EP1276879A4 (de) 2000-04-11 2004-12-22 Univ Jefferson MUIR-TORRE-ÄHNLICHES SYNDROM IN Fhit-DEFIZIENTEN MÄUSEN
US20020086331A1 (en) 2000-05-16 2002-07-04 Carlo Croce Crystal structure of worm NitFhit reveals that a Nit tetramer binds two Fhit dimers
US7060811B2 (en) 2000-10-13 2006-06-13 Board Of Regents, The University Of Texas System WWOX: a tumor suppressor gene mutated in multiple cancers
US20020173478A1 (en) 2000-11-14 2002-11-21 The Trustees Of The University Of Pennsylvania Post-transcriptional gene silencing by RNAi in mammalian cells
US20040033502A1 (en) 2001-03-28 2004-02-19 Amanda Williams Gene expression profiles in esophageal tissue
US20050176025A1 (en) 2001-05-18 2005-08-11 Sirna Therapeutics, Inc. RNA interference mediated inhibition of B-cell CLL/Lymphoma-2 (BCL-2) gene expression using short interfering nucleic acid (siNA)
EP1430128B1 (de) 2001-09-28 2018-04-25 Max-Planck-Gesellschaft zur Förderung der Wissenschaften e.V. Micro-rns moleküle
US7371736B2 (en) 2001-11-07 2008-05-13 The Board Of Trustees Of The University Of Arkansas Gene expression profiling based identification of DKK1 as a potential therapeutic targets for controlling bone loss
GB0128898D0 (en) 2001-12-03 2002-01-23 Biotech Res Ventures Pte Ltd Materials and methods relating to the stabilization and activation of a tumour suppressor protein
WO2003076424A1 (en) 2002-03-08 2003-09-18 Eisai Co. Ltd. Macrocyclic compounds useful as pharmaceuticals
US20060084059A1 (en) 2002-04-08 2006-04-20 Tai-Tung Yip Serum biomarkers in hepatocellular carcinoma
US20040078834A1 (en) 2002-04-29 2004-04-22 Croce Carlo M. Human chronic lymphocytic leukemia modeled in mouse by targeted TCL1 expression
EP1537227B1 (de) 2002-05-31 2010-02-17 The Regents Of The University Of California Verfahren zur wirksamen rna-interferenz in säugerzellen
EP1530418A4 (de) 2002-05-31 2005-10-12 Univ Leland Stanford Junior Verfahren zur identifizierung und isolierung von stammzellen und krebsstammzellen
WO2004005891A2 (en) * 2002-07-10 2004-01-15 The Regents Of The University Of Michigan Expression profile of lung cancer
US7148342B2 (en) 2002-07-24 2006-12-12 The Trustees Of The University Of Pennyslvania Compositions and methods for sirna inhibition of angiogenesis
US20050260639A1 (en) 2002-09-30 2005-11-24 Oncotherapy Science, Inc. Method for diagnosing pancreatic cancer
US20050266443A1 (en) 2002-10-11 2005-12-01 Thomas Jefferson University Novel tumor suppressor gene and compositions and methods for making and using the same
EP1581621A4 (de) 2002-10-11 2006-07-05 Univ Jefferson Neues tumorsuppressorgen sowie zusammensetzungen und verfahren zur herstellung und verwendung davon
JP4939055B2 (ja) * 2002-11-13 2012-05-23 トマス ジェファソン ユニバーシティ 癌の診断および治療のための組成物および方法
US7250496B2 (en) 2002-11-14 2007-07-31 Rosetta Genomics Ltd. Bioinformatically detectable group of novel regulatory genes and uses thereof
WO2004071464A2 (en) 2003-02-12 2004-08-26 Johns Hopkins University School Of Medicine Diagnostic application of differentially-expressed genes in lympho-hematopoietic stem cells
WO2004079013A1 (en) 2003-03-03 2004-09-16 Arizona Board Of Regents On Behalf Of The University Of Arizona Ecto-5’-nucleotidase (cd73) used in the diagnosis and the treatment of pancreatic cancer
US7183384B2 (en) 2003-03-06 2007-02-27 A & G Pharmaceutical, Inc. Monoclonal antibody 7H11 reactive with human cancer
AU2003286741A1 (en) 2003-05-02 2004-11-26 Thomas Jefferson University Methods and compositions for diagnosis and therapy of parkin-associated disorders
US20050069918A1 (en) 2003-05-29 2005-03-31 Francois Claret JAB1 as a prognostic marker and a therapeutic target for human cancer
AU2004289953B2 (en) 2003-06-18 2008-09-25 Genelux Corporation Modified recombinant vaccina viruses and other microorganisms, uses thereof
WO2005013901A2 (en) 2003-07-31 2005-02-17 Isis Pharmaceuticals, Inc. Oligomeric compounds and compositions for use in modulation of small non-coding rnas
US8106180B2 (en) 2003-08-07 2012-01-31 Whitehead Institute For Biomedical Research Methods and products for expression of micro RNAs
US20050037362A1 (en) 2003-08-11 2005-02-17 Eppendorf Array Technologies, S.A. Detection and quantification of siRNA on microarrays
US8412541B2 (en) 2003-08-14 2013-04-02 Edda Technology, Inc. Method and system for intelligent qualitative and quantitative analysis for medical diagnosis
US20050084883A1 (en) 2003-08-25 2005-04-21 The Johns Hopkins University School Of Medicine Method of diagnosis and treatment of pancreatic endocrine neoplasms based on differential gene expression analysis
JP2007505634A (ja) 2003-09-22 2007-03-15 ロゼッタ インファーマティクス エルエルシー Ｒｎａ干渉を用いる合成致死スクリーニング
EP1668155A2 (de) 2003-09-24 2006-06-14 Oncotherapy Science, Inc. Verfahren zur detektion, diagnose und behandlung von hepatozellulärem karzinom (hcc)
US20050186589A1 (en) 2003-11-07 2005-08-25 University Of Massachusetts Interspersed repetitive element RNAs as substrates, inhibitors and delivery vehicles for RNAi
US20050164252A1 (en) 2003-12-04 2005-07-28 Yeung Wah Hin A. Methods using non-genic sequences for the detection, modification and treatment of any disease or improvement of functions of a cell
ATE502298T1 (de) 2003-12-19 2011-04-15 Univ California Verfahren und materialien zur beurteilung von prostatakrebstherapien
EP1713938A2 (de) 2004-02-09 2006-10-25 Thomas Jefferson University Diagnose und behandlung von krebserkrankungen mit oder nahe mit krebs in zusammenhang stehenden chromosomalen merkmalen lokalisierter microrna
US20050256072A1 (en) * 2004-02-09 2005-11-17 University Of Massachusetts Dual functional oligonucleotides for use in repressing mutant gene expression
CA2556435C (en) 2004-02-13 2014-08-12 The Rockefeller University Anti-microrna oligonucleotide molecules
SG155968A1 (en) 2004-02-23 2009-10-29 Univ Erasmus Medical Ct Classification, diagnosis and prognosis of acute myeloid leukemia by gene expression profiling
US7365058B2 (en) 2004-04-13 2008-04-29 The Rockefeller University MicroRNA and methods for inhibiting same
KR20070004957A (ko) 2004-04-20 2007-01-09 제나코 바이오메디컬 프로덕츠, 인코포레이티드 ｎｃＲＮＡ 검출 방법
EP1784501B1 (de) 2004-05-14 2015-11-18 Rosetta Genomics Ltd Micro-rnas und deren verwendung
EP1771563A2 (de) 2004-05-28 2007-04-11 Ambion, Inc. VERFAHREN UND ZUSAMMENSETZUNGEN MIT MicroRNA
US7635563B2 (en) 2004-06-30 2009-12-22 Massachusetts Institute Of Technology High throughput methods relating to microRNA expression analysis
US20060037088A1 (en) 2004-08-13 2006-02-16 Shulin Li Gene expression levels as predictors of chemoradiation response of cancer
CA2583375C (en) 2004-09-02 2013-01-15 Yale University Regulation of oncogenes by micrornas
US7642348B2 (en) 2004-10-04 2010-01-05 Rosetta Genomics Ltd Prostate cancer-related nucleic acids
US7592441B2 (en) 2004-10-04 2009-09-22 Rosetta Genomics Ltd Liver cancer-related nucleic acids
FR2877350B1 (fr) 2004-11-03 2010-08-27 Centre Nat Rech Scient IDENTIFICATION ET UTILISATION DE miRNAs IMPLIQUES DANS LA DIFFERENCIATION DE CELLULES ISSUES D'UNE LEUCEMIE MYELOIDE
ES2534304T3 (es) 2004-11-12 2015-04-21 Asuragen, Inc. Procedimientos y composiciones que implican miARN y moléculas inhibidoras de miARN
CA2590768A1 (en) 2004-12-14 2006-06-22 Alnylam Pharmaceuticals, Inc. Rnai modulation of mll-af4 and uses thereof
US20060185027A1 (en) 2004-12-23 2006-08-17 David Bartel Systems and methods for identifying miRNA targets and for altering miRNA and target expression
EP1838870A2 (de) 2004-12-29 2007-10-03 Exiqon A/S Neue oligonukleotidzusammensetzungen und sondensequenzen mit eignung zum nachweis und zur analyse von micrornas und ihren ziel-mrnas
EP1851336B1 (de) 2005-01-25 2010-09-08 Rosetta Inpharmatics LLC Verfahren zur quantifizierung kleiner rna-moleküle
US8071306B2 (en) 2005-01-25 2011-12-06 Merck Sharp & Dohme Corp. Methods for quantitating small RNA molecules
US20070065840A1 (en) 2005-03-23 2007-03-22 Irena Naguibneva Novel oligonucleotide compositions and probe sequences useful for detection and analysis of microRNAS and their target mRNAS
GB2425311A (en) 2005-04-15 2006-10-25 Ist Superiore Sanita Micro RNA against kit protein
AU2006242225B2 (en) 2005-04-29 2012-01-12 Rockefeller University Human microRNAs and methods for inhibiting same
EP1904111A4 (de) 2005-06-03 2009-08-19 Univ Johns Hopkins Zusammensetzungen und verfahren zur verringerung der microrna-expression zur behandlung von neoplasien
US20070065844A1 (en) 2005-06-08 2007-03-22 Massachusetts Institute Of Technology Solution-based methods for RNA expression profiling
US20060292616A1 (en) 2005-06-23 2006-12-28 U.S. Genomics, Inc. Single molecule miRNA-based disease diagnostic methods
EP1937845B1 (de) 2005-08-01 2015-06-10 The Ohio State University Research Foundation Verfahren und zusammensetzungen auf mikro-rna-basis zur diagnose, prognose und behandlung von brustkrebs
US20070213292A1 (en) 2005-08-10 2007-09-13 The Rockefeller University Chemically modified oligonucleotides for use in modulating micro RNA and uses thereof
US20070123482A1 (en) 2005-08-10 2007-05-31 Markus Stoffel Chemically modified oligonucleotides for use in modulating micro RNA and uses thereof
ES2523989T3 (es) 2005-09-12 2014-12-03 The Ohio State University Research Foundation Composiciones para la terapia de cánceres asociados con BCL2
EP1940456A4 (de) 2005-10-05 2009-10-21 Univ Ohio State Res Found Wwox-gen, vektoren damit und seine verwendung bei der krebsbehandlung
US7390792B2 (en) 2005-12-15 2008-06-24 Board Of Regents, The University Of Texas System MicroRNA1 therapies
EP2586455B1 (de) 2006-01-05 2014-06-25 The Ohio State University Research Foundation Anomalien bei Mikro-RNA-Expressionen in endokrinen und azinösen Pankreastumoren
EP2479285B1 (de) 2006-01-05 2014-05-14 The Ohio State University Research Foundation Verfahren und Zusammensetzungen auf Mikro-RNA-Basis zur Diagnose und Behandlung von festen Krebsen
AU2007205234B2 (en) 2006-01-05 2012-07-12 The Ohio State University Research Foundation MicroRNA-based methods and compositions for the diagnosis, prognosis and treatment of lung cancer
US20090007281A1 (en) 2006-01-13 2009-01-01 Battelle Memorial Institute Animal Model for Assessing Copd-Related Diseases
EP1996731A2 (de) 2006-03-20 2008-12-03 The Ohio State University Research Foundation Mikrorna-fingerabdrücke während humaner megakaryozytopoiese
WO2007112097A2 (en) 2006-03-24 2007-10-04 Children's Medical Center Corporation Novel signature self renewal gene expression programs
MX2008012219A (es) 2006-04-03 2008-10-02 Santaris Pharma As Composicion farmaceutica que comprende oligonucleotidos antisentido anti-miarn.
US7667090B2 (en) 2006-04-24 2010-02-23 The Ohio State University Research Foundation Transgenic mouse model of B cell malignancy
EP2455493B1 (de) 2006-07-13 2014-01-08 The Ohio State University Research Foundation Verfahren und Zusammensetzungen auf Mikro-RNA-Basis zur Diagnose und Behandlung von Krankheiten im Zusammenhang mit dem Dickdarm
US20080193943A1 (en) 2006-09-05 2008-08-14 Abbott Laboratories Companion diagnostic assays for cancer therapy
CA2663962A1 (en) 2006-09-19 2008-03-27 Asuragen, Inc. Mir-15, mir-26, mir-31,mir-145, mir-147, mir-188, mir-215, mir-216, mir-331, mmu-mir-292-3p regulated genes and pathways as targets for therapeutic intervention
EP2487240B1 (de) 2006-09-19 2016-11-16 Interpace Diagnostics, LLC Mikro-RNA, die differentiell in Pankreaserkrankungen exprimiert sind, und ihre Verwendung
JP2010504350A (ja) 2006-09-19 2010-02-12 アシュラジェン インコーポレイテッド 治療的介入の標的としての、ｍｉＲ−２００によって調節される遺伝子および経路
WO2008097277A2 (en) 2006-09-19 2008-08-14 The Ohio State University Research Foundation Tcl1 expression in chronic lymphocytic leukemia (cll) regulated by mir-29 and mir-181
JP5501766B2 (ja) 2006-11-01 2014-05-28 ジ・オハイオ・ステイト・ユニバーシティ・リサーチ・ファウンデイション 肝細胞癌における生存および転移を予測するためのマイクロｒｎａ発現サイン
US8293684B2 (en) 2006-11-29 2012-10-23 Exiqon Locked nucleic acid reagents for labelling nucleic acids
WO2008070082A2 (en) 2006-12-04 2008-06-12 The Johns Hopkins University Stem-progenitor cell specific micro-ribonucleic acids and uses thereof
EP2104735A2 (de) 2006-12-08 2009-09-30 Asuragen, INC. Mir-21-regulierte gene und pfade als ziele für therapeutische interventionen
EP2104734A2 (de) 2006-12-08 2009-09-30 Asuragen, INC. Mir-20-regulierte gene und pfade als ziele für therapeutische interventionen
CA2671299A1 (en) 2006-12-08 2008-06-19 Asuragen, Inc. Functions and targets of let-7 micro rnas
US20090092974A1 (en) 2006-12-08 2009-04-09 Asuragen, Inc. Micrornas differentially expressed in leukemia and uses thereof
US20090175827A1 (en) 2006-12-29 2009-07-09 Byrom Mike W miR-16 REGULATED GENES AND PATHWAYS AS TARGETS FOR THERAPEUTIC INTERVENTION
CA2674895A1 (en) 2007-01-31 2008-08-07 The Ohio State University Research Foundation Microrna-based methods and compositions for the diagnosis, prognosis and treatment of acute myeloid leukemia (aml)
KR20100027102A (ko) 2007-04-10 2010-03-10 내셔널 타이완 유니버시티 마이크로ｒｎａ를 이용한 암환자의 치료 후 생존을 예측하는 방법
EP2481805A3 (de) 2007-04-30 2012-10-24 The Ohio State University Research Foundation Verfahren zur Unterscheidung von Bauchspeicheldrüsenkrebs von normalen Bauchspeicheldrüsenfunktionen und chronischer Bauchspeicheldrüsenentzündung
US20090005336A1 (en) 2007-05-08 2009-01-01 Zhiguo Wang Use of the microRNA miR-1 for the treatment, prevention, and diagnosis of cardiac conditions
US20090232893A1 (en) 2007-05-22 2009-09-17 Bader Andreas G miR-143 REGULATED GENES AND PATHWAYS AS TARGETS FOR THERAPEUTIC INTERVENTION
US20090131354A1 (en) 2007-05-22 2009-05-21 Bader Andreas G miR-126 REGULATED GENES AND PATHWAYS AS TARGETS FOR THERAPEUTIC INTERVENTION
WO2008154098A2 (en) 2007-06-07 2008-12-18 Wisconsin Alumni Research Foundation Reagents and methods for mirna expression analysis and identification of cancer biomarkers
CN101711287B (zh) 2007-06-08 2016-04-27 由卫生与公众服务部代表的美利坚合众国政府 确定肝细胞癌亚型和检测肝癌干细胞的方法
CA2689974A1 (en) 2007-06-08 2008-12-18 Asuragen, Inc. Mir-34 regulated genes and pathways as targets for therapeutic intervention
CN101918424A (zh) 2007-06-15 2010-12-15 俄亥俄州立大学研究基金会 用于靶向由Drosha介导的微小RNA加工的致癌ALL-1融合蛋白
CN101809169B (zh) 2007-07-31 2013-07-17 俄亥俄州立大学研究基金会 通过靶向dnmt3a和dnmt3b恢复甲基化的方法
EP2653561B1 (de) 2007-08-03 2016-03-02 The Ohio State University Research Foundation Ultrakonservierte Bereiche zur Codierung von ncRNA
JP5770472B2 (ja) 2007-08-22 2015-08-26 ジ・オハイオ・ステイト・ユニバーシティ・リサーチ・ファウンデイションＴｈｅ Ｏｈｉｏ Ｓｔａｔｅ Ｕｎｉｖｅｒｓｉｔｙ Ｒｅｓｅａｒｃｈ Ｆｏｕｎｄａｔｉｏｎ ヒト急性白血病におけるｅｐｈａ７及びｅｒｋリン酸化の調節解除を誘発するための方法及び組成物
US20090061424A1 (en) 2007-08-30 2009-03-05 Sigma-Aldrich Company Universal ligation array for analyzing gene expression or genomic variations
EP3048177A1 (de) 2007-09-06 2016-07-27 The Ohio State University Research Foundation Mirna-signaturen in menschlichem ovarialkarzinom
JP5723156B2 (ja) 2007-10-11 2015-05-27 ジ・オハイオ・ステイト・ユニバーシティ・リサーチ・ファウンデイションＴｈｅ Ｏｈｉｏ Ｓｔａｔｅ Ｕｎｉｖｅｒｓｉｔｙ Ｒｅｓｅａｒｃｈ Ｆｏｕｎｄａｔｉｏｎ 食道腺癌の診断及び治療のための方法及び組成物
WO2009055773A2 (en) 2007-10-26 2009-04-30 The Ohio State University Research Foundation Methods for identifying fragile histidine triad (fhit) interaction and uses thereof
US20090123933A1 (en) 2007-11-12 2009-05-14 Wake Forest University Health Sciences Microrna biomarkers in lupus
US8575121B2 (en) 2007-11-12 2013-11-05 The United States of America as represented by the Secetary of the Department of Health and Human Services Therapeutic applications of p53 isoforms in regenerative medicine, aging and cancer
EP2225396A4 (de) 2007-11-30 2011-03-02 Univ Ohio State Res Found Mikro-rna-expressionsprofilerstellung und abzielen darauf in peripherem blut bei lungenkrebs
WO2009070805A2 (en) 2007-12-01 2009-06-04 Asuragen, Inc. Mir-124 regulated genes and pathways as targets for therapeutic intervention
WO2009086156A2 (en) 2007-12-21 2009-07-09 Asuragen, Inc. Mir-10 regulated genes and pathways as targets for therapeutic intervention
SG10201609507TA (en) 2008-02-01 2017-01-27 Gen Hospital Corp Use of microvesicles in diagnosis, prognosis and treatment of medical diseases and conditions
EP2260110B1 (de) 2008-02-08 2014-11-12 Asuragen, INC. In lymphknoten von krebspatienten differentiell exprimierte mirnas
US20110021609A1 (en) 2008-02-28 2011-01-27 The Ohio State University Research Foundation MicroRNA Signatures Associated with Cytogenetics and Prognosis in Acute Myeloid Leukemia (AML) and Uses Thereof
CA2717026A1 (en) 2008-02-28 2009-09-03 The Ohio State University Research Foundation Microrna signatures associated with human chronic lymphocytic leukemia (ccl) and uses thereof
EP2257647B1 (de) 2008-02-28 2016-09-14 The Ohio State University Research Foundation Auf micro-rna beruhende verfahren und zusammensetzungen zur diagnose von magenkrebs
JP2011517283A (ja) 2008-02-28 2011-06-02 ジ・オハイオ・ステイト・ユニバーシティ・リサーチ・ファウンデイション 前立腺関連障害の予後診断及び治療のためのマイクロｒｎａに基づく方法及び組成物
WO2009111643A2 (en) 2008-03-06 2009-09-11 Asuragen, Inc. Microrna markers for recurrence of colorectal cancer
EP2271757A2 (de) 2008-03-26 2011-01-12 Asuragen, INC. Zusammensetzungen und verfahren in zusammenhang mit mir-16 und prostatakrebstherapie
EP2990487A1 (de) 2008-05-08 2016-03-02 Asuragen, INC. Zusammensetzungen und verfahren in zusammenhang mit der mirna-modulation von neovaskularisation oder angiogenese
CN102112110A (zh) 2008-06-06 2011-06-29 米尔纳医疗股份有限公司 用于RNAi试剂体内递送的新型组合物
EP2307028B1 (de) 2008-06-11 2013-10-02 The Government of the United States of America as represented by The Secretary of the Department of Health and Human Services Verwendung der mir-26-familie als prädiktiver marker für hepatozelluläres karzinom und des ansprechens auf die therapie
US20110152357A1 (en) 2008-08-12 2011-06-23 The Ohio State University Micro-RNA-Based Compositions and Methods for the Diagnosis, Prognosis and Treatment of Multiple Myeloma
CN102271706A (zh) 2008-11-21 2011-12-07 俄亥俄州立大学研究基金会 作为转录调节剂的Tcl1
WO2010065156A1 (en) 2008-12-05 2010-06-10 The Ohio State University Research Foundation Microrna-based methods and compositions for the diagnosis and treatment of ovarian cancer
EP2401405A4 (de) 2009-02-26 2013-10-16 Univ Ohio State Res Found Mikro-rnas bei niemalsrauchern sowie entsprechende materialien und verfahren

Also Published As

Publication number Publication date
CN102943108A (zh) 2013-02-27
CN103993082B (zh) 2017-01-11
JP5451077B2 (ja) 2014-03-26
ES2553442T3 (es) 2015-12-09
WO2007081720A2 (en) 2007-07-19
US20110190160A1 (en) 2011-08-04
EP2514434A2 (de) 2012-10-24
EP2514433A2 (de) 2012-10-24
US20080306017A1 (en) 2008-12-11
US8377637B2 (en) 2013-02-19
AU2007205234A1 (en) 2007-07-19
CN101400361A (zh) 2009-04-01
JP2009531018A (ja) 2009-09-03
EP1978986A4 (de) 2009-12-09
ES2536438T3 (es) 2015-05-25
ES2429404T3 (es) 2013-11-14
EP1978986A2 (de) 2008-10-15
EP2514434B1 (de) 2015-10-21
CN103993082A (zh) 2014-08-20
US7943318B2 (en) 2011-05-17
ES2554531T3 (es) 2015-12-21
CN102943108B (zh) 2014-05-21
EP2502630A3 (de) 2013-02-13
EP2502630B1 (de) 2015-03-11
WO2007081720A3 (en) 2008-02-14
US8361710B2 (en) 2013-01-29
CN101400361B (zh) 2012-10-17
US20110177968A1 (en) 2011-07-21
EP1978986B1 (de) 2013-08-07
AU2007205234B2 (en) 2012-07-12
EP2502630A2 (de) 2012-09-26
EP2514434A3 (de) 2013-02-13
EP2514433A3 (de) 2013-02-13
CA2633674A1 (en) 2007-07-19

Similar Documents

Publication Publication Date Title
EP2514433B1 (de) Verfahren auf Mikro-RNA-Basis zur Diagnose, Prognose und Behandlung von Lungenkrebs
EP2586455B1 (de) Anomalien bei Mikro-RNA-Expressionen in endokrinen und azinösen Pankreastumoren
JP2013046612A (ja) 固形癌の診断及び治療のためのマイクロｒｎａに基づく方法及び組成物
AU2014203454B2 (en) MicroRNA-based methods and compositions for the diagnosis, prognosis and treatment of lung cancer
AU2012238336B8 (en) MicroRNA-based methods and compositions for the diagnosis, prognosis and treatment of lung cancer
AU2013206405B2 (en) MicroRNA expression abnormalities in pancreatic endocrine and acinar tumors
AU2016202133A1 (en) MicroRNA expression abnormalities in pancreatic endocrine and acinar tumors
AU2016203848B2 (en) MicroRNA-based methods and compositions for the diagnosis, prognosis and treatment of lung cancer

Legal Events

Date Code Title Description
PUAI Public reference made under article 153(3) epc to a published international application that has entered the european phase

Free format text: ORIGINAL CODE: 0009012

AC Divisional application: reference to earlier application

Ref document number: 1978986

Country of ref document: EP

Kind code of ref document: P

AK Designated contracting states

Kind code of ref document: A2

Designated state(s): AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HU IE IS IT LI LT LU LV MC NL PL PT RO SE SI SK TR

AX Request for extension of the european patent

Extension state: AL BA HR MK RS

PUAL Search report despatched

Free format text: ORIGINAL CODE: 0009013

AK Designated contracting states

Kind code of ref document: A3

Designated state(s): AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HU IE IS IT LI LT LU LV MC NL PL PT RO SE SI SK TR

AX Request for extension of the european patent

Extension state: AL BA HR MK RS

RIC1 Information provided on ipc code assigned before grant

Ipc: A61K 38/00 20060101AFI20130107BHEP

Ipc: C12Q 1/68 20060101ALI20130107BHEP

RAP1 Party data changed (applicant data changed or rights of an application transferred)

Owner name: THE OHIO STATE UNIVERSITY RESEARCH FOUNDATION

17P Request for examination filed

Effective date: 20130719

RBV Designated contracting states (corrected)

Designated state(s): AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HU IE IS IT LI LT LU LV MC NL PL PT RO SE SI SK TR

17Q First examination report despatched

Effective date: 20130814

GRAP Despatch of communication of intention to grant a patent

Free format text: ORIGINAL CODE: EPIDOSNIGR1

INTG Intention to grant announced

Effective date: 20150529

GRAS Grant fee paid

Free format text: ORIGINAL CODE: EPIDOSNIGR3

GRAA (expected) grant

Free format text: ORIGINAL CODE: 0009210

AC Divisional application: reference to earlier application

Ref document number: 1978986

Country of ref document: EP

Kind code of ref document: P

AK Designated contracting states

Kind code of ref document: B1

Designated state(s): AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HU IE IS IT LI LT LU LV MC NL PL PT RO SE SI SK TR

REG Reference to a national code

Ref country code: GB

Ref legal event code: FG4D

Ref country code: NL

Ref legal event code: MP

Effective date: 20151021

REG Reference to a national code

Ref country code: CH

Ref legal event code: EP

REG Reference to a national code

Ref country code: AT

Ref legal event code: REF

Ref document number: 756151

Country of ref document: AT

Kind code of ref document: T

Effective date: 20151115

REG Reference to a national code

Ref country code: IE

Ref legal event code: FG4D

REG Reference to a national code

Ref country code: DE

Ref legal event code: R096

Ref document number: 602007043645

Country of ref document: DE

REG Reference to a national code

Ref country code: ES

Ref legal event code: FG2A

Ref document number: 2554531

Country of ref document: ES

Kind code of ref document: T3

Effective date: 20151221

REG Reference to a national code

Ref country code: FR

Ref legal event code: PLFP

Year of fee payment: 10

REG Reference to a national code

Ref country code: LT

Ref legal event code: MG4D

REG Reference to a national code

Ref country code: AT

Ref legal event code: MK05

Ref document number: 756151

Country of ref document: AT

Kind code of ref document: T

Effective date: 20151021

PG25 Lapsed in a contracting state [announced via postgrant information from national office to epo]

Ref country code: NL

Free format text: LAPSE BECAUSE OF FAILURE TO SUBMIT A TRANSLATION OF THE DESCRIPTION OR TO PAY THE FEE WITHIN THE PRESCRIBED TIME-LIMIT

Effective date: 20151021

Ref country code: LT

Free format text: LAPSE BECAUSE OF FAILURE TO SUBMIT A TRANSLATION OF THE DESCRIPTION OR TO PAY THE FEE WITHIN THE PRESCRIBED TIME-LIMIT

Effective date: 20151021

Ref country code: IS

Free format text: LAPSE BECAUSE OF FAILURE TO SUBMIT A TRANSLATION OF THE DESCRIPTION OR TO PAY THE FEE WITHIN THE PRESCRIBED TIME-LIMIT

Effective date: 20160221

PG25 Lapsed in a contracting state [announced via postgrant information from national office to epo]

Ref country code: AT

Free format text: LAPSE BECAUSE OF FAILURE TO SUBMIT A TRANSLATION OF THE DESCRIPTION OR TO PAY THE FEE WITHIN THE PRESCRIBED TIME-LIMIT

Effective date: 20151021

Ref country code: FI

Free format text: LAPSE BECAUSE OF FAILURE TO SUBMIT A TRANSLATION OF THE DESCRIPTION OR TO PAY THE FEE WITHIN THE PRESCRIBED TIME-LIMIT

Effective date: 20151021

Ref country code: LV

Free format text: LAPSE BECAUSE OF FAILURE TO SUBMIT A TRANSLATION OF THE DESCRIPTION OR TO PAY THE FEE WITHIN THE PRESCRIBED TIME-LIMIT

Effective date: 20151021

Ref country code: SE

Free format text: LAPSE BECAUSE OF FAILURE TO SUBMIT A TRANSLATION OF THE DESCRIPTION OR TO PAY THE FEE WITHIN THE PRESCRIBED TIME-LIMIT

Effective date: 20151021

Ref country code: BE

Free format text: LAPSE BECAUSE OF NON-PAYMENT OF DUE FEES

Effective date: 20160131

Ref country code: PT

Free format text: LAPSE BECAUSE OF FAILURE TO SUBMIT A TRANSLATION OF THE DESCRIPTION OR TO PAY THE FEE WITHIN THE PRESCRIBED TIME-LIMIT

Effective date: 20160222

Ref country code: GR

Free format text: LAPSE BECAUSE OF FAILURE TO SUBMIT A TRANSLATION OF THE DESCRIPTION OR TO PAY THE FEE WITHIN THE PRESCRIBED TIME-LIMIT

Effective date: 20160122

Ref country code: PL

Free format text: LAPSE BECAUSE OF FAILURE TO SUBMIT A TRANSLATION OF THE DESCRIPTION OR TO PAY THE FEE WITHIN THE PRESCRIBED TIME-LIMIT

Effective date: 20151021

REG Reference to a national code

Ref country code: DE

Ref legal event code: R097

Ref document number: 602007043645

Country of ref document: DE

PG25 Lapsed in a contracting state [announced via postgrant information from national office to epo]

Ref country code: CZ

Free format text: LAPSE BECAUSE OF FAILURE TO SUBMIT A TRANSLATION OF THE DESCRIPTION OR TO PAY THE FEE WITHIN THE PRESCRIBED TIME-LIMIT

Effective date: 20151021

PLBE No opposition filed within time limit

Free format text: ORIGINAL CODE: 0009261

STAA Information on the status of an ep patent application or granted ep patent

Free format text: STATUS: NO OPPOSITION FILED WITHIN TIME LIMIT

PG25 Lapsed in a contracting state [announced via postgrant information from national office to epo]

Ref country code: SK

Free format text: LAPSE BECAUSE OF FAILURE TO SUBMIT A TRANSLATION OF THE DESCRIPTION OR TO PAY THE FEE WITHIN THE PRESCRIBED TIME-LIMIT

Effective date: 20151021

Ref country code: RO

Free format text: LAPSE BECAUSE OF FAILURE TO SUBMIT A TRANSLATION OF THE DESCRIPTION OR TO PAY THE FEE WITHIN THE PRESCRIBED TIME-LIMIT

Effective date: 20151021

Ref country code: EE

Free format text: LAPSE BECAUSE OF FAILURE TO SUBMIT A TRANSLATION OF THE DESCRIPTION OR TO PAY THE FEE WITHIN THE PRESCRIBED TIME-LIMIT

Effective date: 20151021

Ref country code: LU

Free format text: LAPSE BECAUSE OF FAILURE TO SUBMIT A TRANSLATION OF THE DESCRIPTION OR TO PAY THE FEE WITHIN THE PRESCRIBED TIME-LIMIT

Effective date: 20160103

Ref country code: DK

Free format text: LAPSE BECAUSE OF FAILURE TO SUBMIT A TRANSLATION OF THE DESCRIPTION OR TO PAY THE FEE WITHIN THE PRESCRIBED TIME-LIMIT

Effective date: 20151021

REG Reference to a national code

Ref country code: CH

Ref legal event code: PL

26N No opposition filed

Effective date: 20160722

PG25 Lapsed in a contracting state [announced via postgrant information from national office to epo]

Ref country code: MC

Free format text: LAPSE BECAUSE OF FAILURE TO SUBMIT A TRANSLATION OF THE DESCRIPTION OR TO PAY THE FEE WITHIN THE PRESCRIBED TIME-LIMIT

Effective date: 20151021

PG25 Lapsed in a contracting state [announced via postgrant information from national office to epo]

Ref country code: CH

Free format text: LAPSE BECAUSE OF NON-PAYMENT OF DUE FEES

Effective date: 20160131

Ref country code: LI

Free format text: LAPSE BECAUSE OF NON-PAYMENT OF DUE FEES

Effective date: 20160131

REG Reference to a national code

Ref country code: IE

Ref legal event code: MM4A

PG25 Lapsed in a contracting state [announced via postgrant information from national office to epo]

Ref country code: SI

Free format text: LAPSE BECAUSE OF FAILURE TO SUBMIT A TRANSLATION OF THE DESCRIPTION OR TO PAY THE FEE WITHIN THE PRESCRIBED TIME-LIMIT

Effective date: 20151021

PG25 Lapsed in a contracting state [announced via postgrant information from national office to epo]

Ref country code: BE

Free format text: LAPSE BECAUSE OF FAILURE TO SUBMIT A TRANSLATION OF THE DESCRIPTION OR TO PAY THE FEE WITHIN THE PRESCRIBED TIME-LIMIT

Effective date: 20151021

REG Reference to a national code

Ref country code: FR

Ref legal event code: PLFP

Year of fee payment: 11

PG25 Lapsed in a contracting state [announced via postgrant information from national office to epo]

Ref country code: IE

Free format text: LAPSE BECAUSE OF NON-PAYMENT OF DUE FEES

Effective date: 20160103

PGFP Annual fee paid to national office [announced via postgrant information from national office to epo]

Ref country code: DE

Payment date: 20170125

Year of fee payment: 11

Ref country code: FR

Payment date: 20170125

Year of fee payment: 11

PGFP Annual fee paid to national office [announced via postgrant information from national office to epo]

Ref country code: GB

Payment date: 20170127

Year of fee payment: 11

PGFP Annual fee paid to national office [announced via postgrant information from national office to epo]

Ref country code: ES

Payment date: 20170126

Year of fee payment: 11

Ref country code: IT

Payment date: 20170124

Year of fee payment: 11

PG25 Lapsed in a contracting state [announced via postgrant information from national office to epo]

Ref country code: HU

Free format text: LAPSE BECAUSE OF FAILURE TO SUBMIT A TRANSLATION OF THE DESCRIPTION OR TO PAY THE FEE WITHIN THE PRESCRIBED TIME-LIMIT; INVALID AB INITIO

Effective date: 20070103

Ref country code: CY

Free format text: LAPSE BECAUSE OF FAILURE TO SUBMIT A TRANSLATION OF THE DESCRIPTION OR TO PAY THE FEE WITHIN THE PRESCRIBED TIME-LIMIT

Effective date: 20151021

PG25 Lapsed in a contracting state [announced via postgrant information from national office to epo]

Ref country code: TR

Free format text: LAPSE BECAUSE OF FAILURE TO SUBMIT A TRANSLATION OF THE DESCRIPTION OR TO PAY THE FEE WITHIN THE PRESCRIBED TIME-LIMIT

Effective date: 20151021

PG25 Lapsed in a contracting state [announced via postgrant information from national office to epo]

Ref country code: BG

Free format text: LAPSE BECAUSE OF FAILURE TO SUBMIT A TRANSLATION OF THE DESCRIPTION OR TO PAY THE FEE WITHIN THE PRESCRIBED TIME-LIMIT

Effective date: 20151021

REG Reference to a national code

Ref country code: DE

Ref legal event code: R119

Ref document number: 602007043645

Country of ref document: DE

GBPC Gb: european patent ceased through non-payment of renewal fee

Effective date: 20180103

PG25 Lapsed in a contracting state [announced via postgrant information from national office to epo]

Ref country code: FR

Free format text: LAPSE BECAUSE OF NON-PAYMENT OF DUE FEES

Effective date: 20180131

Ref country code: DE

Free format text: LAPSE BECAUSE OF NON-PAYMENT OF DUE FEES

Effective date: 20180801

REG Reference to a national code

Ref country code: FR

Ref legal event code: ST

Effective date: 20180928

PG25 Lapsed in a contracting state [announced via postgrant information from national office to epo]

Ref country code: GB

Free format text: LAPSE BECAUSE OF NON-PAYMENT OF DUE FEES

Effective date: 20180103

PG25 Lapsed in a contracting state [announced via postgrant information from national office to epo]

Ref country code: IT

Free format text: LAPSE BECAUSE OF NON-PAYMENT OF DUE FEES

Effective date: 20180103

REG Reference to a national code

Ref country code: ES

Ref legal event code: FD2A

Effective date: 20190730

PG25 Lapsed in a contracting state [announced via postgrant information from national office to epo]

Ref country code: ES

Free format text: LAPSE BECAUSE OF NON-PAYMENT OF DUE FEES

Effective date: 20180104