ATE434669T1 - Spezies-spezifische, genus-spezifische und universelle dna sonden und amplifikationsprimer zur schnellen erkennung und identifizierung von pathogenen bakterien und pilzen und assoziierten antibiotikaresistenzgenen aus klinischen proben für die diagnose in mikrobiologischen laboratorien. - Google Patents
Spezies-spezifische, genus-spezifische und universelle dna sonden und amplifikationsprimer zur schnellen erkennung und identifizierung von pathogenen bakterien und pilzen und assoziierten antibiotikaresistenzgenen aus klinischen proben für die diagnose in mikrobiologischen laboratorien.Info
- Publication number
- ATE434669T1 ATE434669T1 AT97911094T AT97911094T ATE434669T1 AT E434669 T1 ATE434669 T1 AT E434669T1 AT 97911094 T AT97911094 T AT 97911094T AT 97911094 T AT97911094 T AT 97911094T AT E434669 T1 ATE434669 T1 AT E434669T1
- Authority
- AT
- Austria
- Prior art keywords
- species
- specific
- resistance genes
- identification
- diagnosis
- Prior art date
Links
- 238000001514 detection method Methods 0.000 title abstract 4
- 108090000623 proteins and genes Proteins 0.000 title abstract 4
- 230000003321 amplification Effects 0.000 title abstract 3
- 230000003115 biocidal effect Effects 0.000 title abstract 3
- 238000003199 nucleic acid amplification method Methods 0.000 title abstract 3
- 238000003745 diagnosis Methods 0.000 title abstract 2
- 244000052616 bacterial pathogen Species 0.000 title 1
- 230000002906 microbiologic effect Effects 0.000 title 1
- 239000000523 sample Substances 0.000 abstract 4
- 238000011002 quantification Methods 0.000 abstract 3
- 241000894006 Bacteria Species 0.000 abstract 2
- 101150100833 aacC3 gene Proteins 0.000 abstract 2
- 238000000034 method Methods 0.000 abstract 2
- 241000894007 species Species 0.000 abstract 2
- 101100214700 Acinetobacter baumannii aacC2 gene Proteins 0.000 abstract 1
- 101100422536 Bacillus subtilis (strain 168) satA gene Proteins 0.000 abstract 1
- 241000222120 Candida <Saccharomycetales> Species 0.000 abstract 1
- 241000222122 Candida albicans Species 0.000 abstract 1
- 238000009007 Diagnostic Kit Methods 0.000 abstract 1
- 241000194033 Enterococcus Species 0.000 abstract 1
- 101100119095 Enterococcus faecalis (strain ATCC 700802 / V583) ermB gene Proteins 0.000 abstract 1
- 241000194031 Enterococcus faecium Species 0.000 abstract 1
- 101100372548 Enterococcus faecium vatD gene Proteins 0.000 abstract 1
- 101100102341 Enterococcus gallinarum vanC gene Proteins 0.000 abstract 1
- 241000186779 Listeria monocytogenes Species 0.000 abstract 1
- 101150052154 MSRA1 gene Proteins 0.000 abstract 1
- 241000588653 Neisseria Species 0.000 abstract 1
- 241000588650 Neisseria meningitidis Species 0.000 abstract 1
- 101100214699 Pseudomonas aeruginosa aacC1 gene Proteins 0.000 abstract 1
- 241000191940 Staphylococcus Species 0.000 abstract 1
- 241001147691 Staphylococcus saprophyticus Species 0.000 abstract 1
- 241000194017 Streptococcus Species 0.000 abstract 1
- 241000193985 Streptococcus agalactiae Species 0.000 abstract 1
- 101150016019 aacA4 gene Proteins 0.000 abstract 1
- 101150014550 aadB gene Proteins 0.000 abstract 1
- 238000003556 assay Methods 0.000 abstract 1
- 230000001580 bacterial effect Effects 0.000 abstract 1
- 101150031494 blaZ gene Proteins 0.000 abstract 1
- 229940095731 candida albicans Drugs 0.000 abstract 1
- 101150025725 ermA gene Proteins 0.000 abstract 1
- 101150016744 ermC gene Proteins 0.000 abstract 1
- 230000002538 fungal effect Effects 0.000 abstract 1
- 208000015181 infectious disease Diseases 0.000 abstract 1
- 230000000813 microbial effect Effects 0.000 abstract 1
- 244000005700 microbiome Species 0.000 abstract 1
- 101150021123 msrA gene Proteins 0.000 abstract 1
- 101150114366 msrA2 gene Proteins 0.000 abstract 1
- 101150006794 msrAB gene Proteins 0.000 abstract 1
- 101150109310 msrAB1 gene Proteins 0.000 abstract 1
- 101150052209 msrAB2 gene Proteins 0.000 abstract 1
- 238000011309 routine diagnosis Methods 0.000 abstract 1
- 238000011282 treatment Methods 0.000 abstract 1
- 101150114434 vanA gene Proteins 0.000 abstract 1
- 101150037181 vanB gene Proteins 0.000 abstract 1
Classifications
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/195—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/195—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
- C07K14/21—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Pseudomonadaceae (F)
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/195—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
- C07K14/21—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Pseudomonadaceae (F)
- C07K14/212—Moraxellaceae, e.g. Acinetobacter, Moraxella, Oligella, Psychrobacter
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/195—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
- C07K14/24—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Enterobacteriaceae (F), e.g. Citrobacter, Serratia, Proteus, Providencia, Morganella, Yersinia
- C07K14/245—Escherichia (G)
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/195—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
- C07K14/24—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Enterobacteriaceae (F), e.g. Citrobacter, Serratia, Proteus, Providencia, Morganella, Yersinia
- C07K14/26—Klebsiella (G)
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/195—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
- C07K14/285—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Pasteurellaceae (F), e.g. Haemophilus influenza
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/195—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
- C07K14/305—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Micrococcaceae (F)
- C07K14/31—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Micrococcaceae (F) from Staphylococcus (G)
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/195—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
- C07K14/315—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Streptococcus (G), e.g. Enterococci
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/195—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
- C07K14/315—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Streptococcus (G), e.g. Enterococci
- C07K14/3156—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Streptococcus (G), e.g. Enterococci from Streptococcus pneumoniae (Pneumococcus)
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/6895—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for plants, fungi or algae
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/156—Polymorphic or mutational markers
Landscapes
- Chemical & Material Sciences (AREA)
- Health & Medical Sciences (AREA)
- Organic Chemistry (AREA)
- Life Sciences & Earth Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Molecular Biology (AREA)
- Biophysics (AREA)
- Biochemistry (AREA)
- Medicinal Chemistry (AREA)
- Gastroenterology & Hepatology (AREA)
- Analytical Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Wood Science & Technology (AREA)
- Zoology (AREA)
- Biotechnology (AREA)
- General Engineering & Computer Science (AREA)
- Physics & Mathematics (AREA)
- Immunology (AREA)
- Microbiology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Pulmonology (AREA)
- Mycology (AREA)
- Botany (AREA)
- Communicable Diseases (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Micro-Organisms Or Cultivation Processes Thereof (AREA)
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US08/743,637 US5994066A (en) | 1995-09-11 | 1996-11-04 | Species-specific and universal DNA probes and amplification primers to rapidly detect and identify common bacterial pathogens and associated antibiotic resistance genes from clinical specimens for routine diagnosis in microbiology laboratories |
| PCT/CA1997/000829 WO1998020157A2 (en) | 1996-11-04 | 1997-11-04 | Species-specific, genus-specific and universal dna probes and amplification primers to rapidly detect and identify common bacterial and fungal pathogens and associated antibiotic resistance genes from clinical specimens for diagnosis in microbiology laboratories |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| ATE434669T1 true ATE434669T1 (de) | 2009-07-15 |
Family
ID=24989560
Family Applications (2)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| AT97911094T ATE434669T1 (de) | 1996-11-04 | 1997-11-04 | Spezies-spezifische, genus-spezifische und universelle dna sonden und amplifikationsprimer zur schnellen erkennung und identifizierung von pathogenen bakterien und pilzen und assoziierten antibiotikaresistenzgenen aus klinischen proben für die diagnose in mikrobiologischen laboratorien. |
| AT09163281T ATE552352T1 (de) | 1996-11-04 | 1997-11-04 | Verfahren, mittel und zusammensetzungen zur erkennung von mitgliedern des staphylococcus genus |
Family Applications After (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| AT09163281T ATE552352T1 (de) | 1996-11-04 | 1997-11-04 | Verfahren, mittel und zusammensetzungen zur erkennung von mitgliedern des staphylococcus genus |
Country Status (14)
| Country | Link |
|---|---|
| US (1) | US5994066A (enExample) |
| EP (8) | EP2128268B1 (enExample) |
| JP (3) | JP2001504330A (enExample) |
| CN (1) | CN1248295A (enExample) |
| AT (2) | ATE434669T1 (enExample) |
| AU (1) | AU731850B2 (enExample) |
| BR (1) | BR9713494A (enExample) |
| CA (4) | CA2789369C (enExample) |
| DE (1) | DE69739473D1 (enExample) |
| DK (1) | DK0943009T3 (enExample) |
| ES (1) | ES2329202T3 (enExample) |
| NO (1) | NO991976L (enExample) |
| NZ (1) | NZ335548A (enExample) |
| WO (1) | WO1998020157A2 (enExample) |
Families Citing this family (189)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20020055101A1 (en) * | 1995-09-11 | 2002-05-09 | Michel G. Bergeron | Specific and universal probes and amplification primers to rapidly detect and identify common bacterial pathogens and antibiotic resistance genes from clinical specimens for routine diagnosis in microbiology laboratories |
| US6905670B2 (en) | 1995-03-28 | 2005-06-14 | The General Hospital Corporation | Methods of screening compounds useful for prevention of infection or pathogenicity |
| CA2255599C (en) | 1996-04-25 | 2006-09-05 | Bioarray Solutions, Llc | Light-controlled electrokinetic assembly of particles near surfaces |
| US20030049636A1 (en) * | 1999-05-03 | 2003-03-13 | Bergeron Michel G. | Species-specific, genus-specific and universal DNA probes and amplification primers to rapidly detect and identify common bacterial and fungal pathogens and associated antibiotic resistance genes from clinical specimens for diagnosis in microbiology laboratories |
| US20100267012A1 (en) * | 1997-11-04 | 2010-10-21 | Bergeron Michel G | Highly conserved genes and their use to generate probes and primers for detection of microorganisms |
| US6558901B1 (en) * | 1997-05-02 | 2003-05-06 | Biomerieux Vitek | Nucleic acid assays |
| US6570001B1 (en) * | 1997-06-20 | 2003-05-27 | Institut Pasteur | Polynucleotides and their use for detecting resistance to streptogramin A or to streptogramin B and related compounds |
| US6800744B1 (en) * | 1997-07-02 | 2004-10-05 | Genome Therapeutics Corporation | Nucleic acid and amino acid sequences relating to Streptococcus pneumoniae for diagnostics and therapeutics |
| DE19731292A1 (de) * | 1997-07-21 | 1999-01-28 | Biotecon Ges Fuer Biotechnologische Entwicklung & Consulting Mbh | Nucleinsäuremolekül, Kit und Verwendung |
| US7060458B1 (en) | 1997-08-14 | 2006-06-13 | Wyeth | Nucleic acid and amino acid sequences relating to Staphylococcus epidermidis for diagnostics and therapeutics |
| EP1040200A4 (en) | 1997-11-25 | 2005-04-20 | Gen Hospital Corp | NUCLEOTIDE SEQUENCES ASSOCIATED WITH VIRULENCE AND USES THEREOF |
| DE69933755T2 (de) | 1998-01-23 | 2007-09-13 | bioMérieux B.V. | Ef-tu mrna als marker für lebensfähige bakterien |
| US6468743B1 (en) * | 1998-05-18 | 2002-10-22 | Conagra Grocery Products Company | PCR techniques for detecting microbial contaminants in foodstuffs |
| AU763105B2 (en) | 1998-05-22 | 2003-07-10 | Inzinta Trading Co. Ltd | Demonstrating resistance to antibiotics in microorganisms |
| GB2362212A (en) * | 1998-09-03 | 2001-11-14 | Univ British Columbia | Method for the identification and speciation of bacteria of the burkholderia cepacia complex |
| US6242223B1 (en) * | 1998-09-28 | 2001-06-05 | Creighton University | Primers for use in detecting beta-lactamases |
| US6451556B1 (en) * | 1998-12-21 | 2002-09-17 | Smithkline Beecham Corporation | EF-Tu |
| GB9904804D0 (en) * | 1999-03-02 | 1999-04-28 | King S College London | Identification of bacteria |
| ES2535961T3 (es) | 1999-04-09 | 2015-05-19 | Zoetis P&U Llc | Bacteria pasteurelácea atenuada que tiene una mutación en un gen de virulencia |
| US6605709B1 (en) | 1999-04-09 | 2003-08-12 | Genome Therapeutics Corporation | Nucleic acid and amino acid sequences relating to Proteus mirabilis for diagnostics and therapeutics |
| US6066461A (en) * | 1999-04-12 | 2000-05-23 | Becton Dickinson And Company | Amplification and detection of Campylobacter jejuni and Campylobacter coli |
| US6821770B1 (en) * | 1999-05-03 | 2004-11-23 | Gen-Probe Incorporated | Polynucleotide matrix-based method of identifying microorganisms |
| EP2322668A3 (en) | 1999-09-28 | 2011-10-05 | Geneohm Sciences Canada Inc. | Highly conserved gene and its use to generate species-specific, genus-specific, family-specific, group-specific and universal nucleic acid probes for microorganisms. |
| CA2391571A1 (en) * | 1999-11-16 | 2001-05-25 | Zhiping Liu | Method for rapid and accurate identification of microorganisms |
| US20030134293A1 (en) * | 1999-11-16 | 2003-07-17 | Zhiping Liu | Method for rapid and accurate identification of microorganisms |
| EP1118677A1 (en) * | 2000-01-17 | 2001-07-25 | Novartis AG | Oligonucleotides useful in identifying fungicide resistant plant pathogenic fungi |
| US7582420B2 (en) | 2001-07-12 | 2009-09-01 | Illumina, Inc. | Multiplex nucleic acid reactions |
| US7611869B2 (en) | 2000-02-07 | 2009-11-03 | Illumina, Inc. | Multiplexed methylation detection methods |
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| US7112716B2 (en) | 2000-04-06 | 2006-09-26 | The General Hospital Corporation | Methods for screening and identifying host pathogen defense genes |
| US20020102678A1 (en) * | 2000-04-14 | 2002-08-01 | Solh Nevine El | Staphylococcal gene, vgaC, conferring resistance to streptogramin A and related compounds |
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| US6261785B1 (en) | 2000-07-27 | 2001-07-17 | Becton, Dickinson And Company | Amplification and detection of Bordetella pertussis |
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| US20020086313A1 (en) * | 2000-09-25 | 2002-07-04 | Kilbane John J. | Application of bioinformatics for direct study of unculturable microorganisms |
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| JP4377689B2 (ja) | 2001-10-15 | 2009-12-02 | バイオアレイ ソリューションズ リミテッド | 同時尋問及び酵素仲介検出による多型遺伝子座の複合分析 |
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1996
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1997
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- 1997-11-04 AU AU48598/97A patent/AU731850B2/en not_active Expired
- 1997-11-04 JP JP52090798A patent/JP2001504330A/ja not_active Withdrawn
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- 1997-11-04 AT AT97911094T patent/ATE434669T1/de active
- 1997-11-04 AT AT09163281T patent/ATE552352T1/de active
- 1997-11-04 EP EP10181601A patent/EP2339033A1/en not_active Withdrawn
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