Classifications

• • C—CHEMISTRY; METALLURGY
  • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
  • C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
  • C12P13/00—Preparation of nitrogen-containing organic compounds
  • C12P13/04—Alpha- or beta- amino acids
  • C12P13/12—Methionine; Cysteine; Cystine
• • C—CHEMISTRY; METALLURGY
  • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
  • C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
  • C12P13/00—Preparation of nitrogen-containing organic compounds
  • C12P13/04—Alpha- or beta- amino acids
  • C12P13/06—Alanine; Leucine; Isoleucine; Serine; Homoserine

Definitions

• This disclosure relates to processes for the production of methionine or its derivatives by culturing a microorganism in an appropriate culture medium comprising a source of carbon and a source of sulfur.
• the microorganism is modified in a way that the production of cysteine and/or C1 units is enhanced an or the transfer potential of the C1 units on homocysteine is increased or optimized.
• the isolation of methionine or its derivates from the fermentation medium is also claimed.
• Sulfur-containing compounds such as cysteine, homocysteine, methionine or S-adenosylmethionine are critical to cellular metabolism, and are produced industrially to be, used as food or feed additives and pharmaceuticals.
• methionine an essential amino acid, which cannot be synthesized by animals, plays an important role in many body functions. Aside from its role in protein biosynthesis methionine is involved in transmethylation and in the bioavailability of selenium and zinc. Methionine is also directly used as a treatment for disorders like allergy and rheumatic fever. Nevertheless most of the methionine which is produced is added to animal feed.
• Microorganisms have developed highly complex regulatory mechanisms that fine-tune the biosynthesis of cell components thus permitting maximum growth rates. Consequently only the required amounts of metabolites, such as amino acids, are synthesized and can usually not be detected in the culture supernatant of wild-type strains. Bacteria control amino acid biosynthesis mainly by feedback inhibition of enzymes, and repression or activation of gene transcription. Effectors for these regulatory pathways are in most cases the end products of the relevant pathways. Consequently, strategies for overproducing amino acids in microorganisms require the deregulation of these control mechanisms.
• Methionine is derived from the amino acid aspartate, but its synthesis requires the convergence of two additional pathways, cysteine biosynthesis and C1 metabolism (N-methyltetrahydrofolate). Aspartate is converted into homoserine by a sequence of three reactions. Homoserine can subsequently enter the threonine/isoleucine or methionine biosynthetic pathway. In E. coli entry into the methionine pathway requires the acylation of homoserine to succinyl-homoserine.
• This activation step allows subsequent condensation with cysteine, leading to the thioether-containing cystathionine, which is hydrolyzed to give homocysteine.
• the final methyl transfer leading to methionine is carried out by either a B 12 -dependent or a B 12 -independent methyltransferase.
• Methionine biosynthesis in E. coli is regulated by repression and activation of methionine biosynthetic genes via the MetJ and MetR proteins, respectively (reviewed in Neidhardt, F. C. (Ed. in Chief), R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M.
• MetJ together with its corepressor S-adenosylmethionine is known to regulate the genes metA, metB, et metE and metF.
• Other genes encoding enzymes implicated in methionine production, such as glyA, metE, metH and metF are activated by MetR whereas metA is repressed by MetR. The corresponding enzymes are all involved in the production and the transfer of C1 units from serine to methionine.
• GlyA encoding serine hydroxymethyltransferase catalyzes the conversion of serine to glycine and the concomitant transfer of a C1 unit on the coenzyme tetrahydrofolate (THF).
• the C1 unit in form of methylene-THF needs to be reduced to methyl-TH before it can be transferred on homocysteine to yield methionine.
• This reaction is catalyzed by the MetF protein. Transfer of the methylgroup is either catalyzed by MetH via vitamin B12 or directly by MetE.
• the MetH enzyme is known to have a catalytic rate that is hundred times higher than the MetE enzyme.
• E. coli reduced sulfur is integrated into cysteine and then transferred onto the methionine precursor O-succinyl-homoserine, a process called transulfuration (reviewed in Neidhardt, F. C. (Ed. in Chief), W Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikbff, M. Riley, M. Schaechter and H. E. Umbarger (eds). 1996. Escherichia coli and Salmonella : Cellular and Molecular Biology. American Society for Microbiology). Cysteine is produced from O-acetylserine and H 2 S by sulfhydrylation.
• the process is negatively feed-back regulated by the product, cysteine, acting on serine transacetylase, encoded by CysE.
• N-acetyl-serine which is spontaneously produced from O-acetyl-serine, together with the transcription factor CysB activates genes encoding enzymes involved in the transport of sulfur compounds, their reduction to H2S and their integration in the organo-sulfur compound cysteine, which as methionine is an essential amino acid.
• Precursors of methionine are defined as metabolites that are part of the methionine specific metabolic pathway or can be derived of these metabolites.
• the methionine specific pathway starts with the transformation of homoserine to succinylhomoserine by the enzyme homoserine, succinyl transferase (MetA).
• Products derived of methionine originate from methionine transforming and/or, degrading pathways.
• enhanced in this context describes the increase in the intracellular activity of an enzymatic activity which is encoded by the corresponding DNA, for example, by increasing the number of copies of the gene, using a strong promoter or using an allele with increased activity and possibly combining these measures.
• Extrachromosomally genes may be carried by different types of plasmids that differ with respect to their origin of replication and thus their copy number in the cell. They may be present as 1-5 copies, ca 20 or up to 500 copies, corresponding to low copy number plasmids with tight replication (pSC011, RK2), low copy number plasmids (pACYC, pRSF1010) or high copy number plasmids (pSK bluescript II).
• the gene may be expressed using promoters with different strength that need or need not to be induced by inducer molecules. These promoters may be homologous or heterologous. Examples are the promoters Ptrc, Ptac, Plc, the lambda promoter cl or other promoters known to the expert in the field.
• Expression of the target genes may be boosted or reduced by elements stabilizing or destabilizing the corresponding messenger RNA (Carrier and Keasling (1998) Biotechnol. Prog. 15, 58-64) or the protein (e.g. GST tags, Amersham Biosciences).
• elements stabilizing or destabilizing the corresponding messenger RNA Carrier and Keasling (1998) Biotechnol. Prog. 15, 58-64) or the protein (e.g. GST tags, Amersham Biosciences).
• microorganisms that contain one or several alleles of the gene to be enhanced.
• genes involved in cysteine production may be enhanced.
• Genes involved in cysteine production comprise genes encoding proteins required for the import of a sulfur source, the transformation of that sulfur source into hydrogen sulfide and the assimilation of hydrogen sulfide or the sulfur source into cysteine or its derivatives.
• accession gene number function cysA 1788761 sulfate permease cysU, cysT 1788764 component of sulfate ABC transporter cysW 1788762 membrane bound sulfate transport protein cysZ 1788753 ORF upstream of cysK cysN 1789108 ATP sulfurylase cysD 1789109 sulfate adenylyltransferase cysC 1789107 adenylylsulfate kinase cysH 1789121 adenylylsulfate reductase cysI 1789122 sulfite reductase, alpha subunit cysJ 1789123 sulfite reductase, beta subunit cysE 1790035 serine acetyltransferase cysK 1788754 cysteine synthase cysM 23
• PFAM protein families database of alignments and hidden Markov models; http://www.sanger.ac.uk/Software/Pfam/) represents a large collection of protein sequence alignments. Each PFAM makes it possible to visualize multiple alignments, see protein domains, evaluate distribution among organisms, gain access to other databases, and visualize-known protein structures.
• COGs clusters of orthologous groups of proteins, http://www.ncbi.nlm.nih.gov/COG/) are obtained by comparing protein sequences from 66 fully sequenced genomes representing-30 major phylogenic lines. Each COG is defined from at least three lines, which permits the identification of former conserved domains.
• the means of identifying homologous sequences and their percentage homologies are well known to those skilled in the art, and include in particular the BLAST programs, which can be used from the website, http://www.ncbi.nlm.nih.gov/BLAST/ with the default parameters indicated on that website.
• the sequences obtained can then be exploited (e.g., aligned) using, for example, the programs CLUSTAL. (http://www.ebi.ac.uk/clustalw/) or MULTALIN (http://prodes.toulouse.inra.fr/multalin/cgi-bin/multalin.pl), with the default parameters indicated on those websites.
• the microorganism may be modified to increase the expression of cysE encoding serine transacetylase.
• microorganisms that contain one or several alleles encoding serine transacetylase.
• Such strains are characterized by the fact that they possess a cysteine metabolism which permits an increased flux towards methionine by providing an increased substrate concentration for the synthesis of ⁇ -cystathionine, a reaction catalyzed by MetB.
• MetB a reaction catalyzed by MetB.
• the MetB enzyme produces ammonia, succinate and ⁇ -ketobutyrate from succinyl-homoserine, a reaction called ⁇ -elimination.
• An increased cysteine concentration reduces the amount of ⁇ -ketobutyrate produced and thus increases the flow towards methionine.
• Enhanced expression of serine transacetylase activities can be validated in enzymatic tests with serine and acetyl-CoA.
• the react on is started by adding the protein extract containing serine transacetylase activity, and the formation of O-acetyl-serine, is monitored by GC-MS after protein precipitation and derivatization with a silylating reagent.
• heterologous promoter is understood as the modified wildtype promoter or any promoter from another organism or an entirely synthetic promoter.
• the heterologous promoter is a strong promoter, such as Ptrc, Ptac, lamda cI or other known promoters.
• Increases are accomplished by adapting the expression level of the concerned gene in a way to obtain the highest methionine production. In most cases this is done by creating expression libraries of the concerned gene using for example heterologous promoters and screening for the best producers.
• C1 unit- describes single carbon atoms that are bound to the carrier molecule tetrahydrofolate as methyl, methylene, methenyl or formyl groups.
• transfer potential describes the capability of the microorganisms to transfer C1 units onto homocysteine. This potential is determined by the activities of MetF and/or MetH that have been enhanced and/or optimized by the inventors.
• serA 1789279 phosphoglycerate dehydrogenase serB 1790849 phosphoserine phosphatase serC 1787136 phosphoserine aminotransferase glyA 1788902 serine hydroxymethyltransferase gcvT 1789272 Tetrahydrofolate dependent aminomethyl transferase gcvH 1789271 Glycine cleavage, carrier of aminomethyl group gcvP 1789269 Glycine dehydrogenase (decarboxylating) lpd 1786307 Lipoamide dehydrogenase
• metF 1790377 5,10-Methylenetetrahydrofolate reductase metH 1790450 B12-dependent homocysteine-N5- methyltetrahydrofolate transmethylase metE 2367304 Tetrahydropteroyltriglutamate methyltransferase
• the microorganism may be used for the production of methionine is modified to increase expression of metF or metH, or both or to express metF from a heterologous promoter.
• Enhanced vitamin B12 dependent methionine synthase (MetH) activity can be validated in enzymatic tests with methyl-THF and homocysteine in the presence of vitamin B12 and SAM.
• the reaction is started by adding the protein extract containing the methylene tetrahydrofolate reductase activity, and the formation of methionine is monitored by GC-MS after protein precipitation and derivatization with a silylating reagent.
• Methionine production can be further increased by increasing the expression of additional genes involved in methionine biosynthesis, which is also object of the invention.
• metA 1790443 Homoserine succinyltransferase metB 1790375 Cystathionine- ⁇ -synthase metC 1789383 Cystathionine- ⁇ -lyase metF 1790377 5,10-Methylenetetrahydrofolate reductase metR 1790262 Positive regulatory gene for metE, metH and metF
• genes in pathways degrading methionine or deviating from the methionine production pathway may be reduced or the genes may be deleted.
• Anaplerotic reactions may be boosted by expressing
• Acetate consuming reactions may be booster by over-expressing
• L-methionine its precursors or compounds derived thereof can be achieved by overexpressing one or several of the following genes: pyruvate cartboxylases, e.g. from Rhizobium etli (pyc, U51439), or one of its homologs, the homoserine synthesizing enzymes encoded by the genes thrA (homoserine dehydrogenase/aspartokinase, 1786183), preferably with reduced feed-back sensitivity, metL (homoserine dehydrogenase/aspartokinase, g1790376) or lysC (aspartokinase, 1790455) and asd (aspartate semialdehyde dehydrogenase).
• pyruvate cartboxylases e.g. from Rhizobium etli (pyc, U51439), or one of its homologs
• a further increase in the production of L-methionine, its precursors or compounds derived thereof, is achieved by means of deleting the gene for the repressor protein MetJ, responsible for the down-regulation of the methionine regulon as was suggested in JP 2000157267-A/3 (see also GenBank 1790373).
• Methionine production is further increased by using homoserine succinyltransferase alleles with reduced feed-back sensitivity to its inhibitors SAM and methionine as described in WO 2005/111202 that is incorporated herein by reference in its entirety.
• L-methionine its precursors or compounds derived thereof, can be achieved by attenuating the activity or deleting one of the following genes.
• Attenuation in this context describes the red action of the intracellular activity of an enzyme by measures such as reducing its expression, reducing the stability of the enzyme, increasing its degradation and/or other known solutions.
• Production of methionine may be further increased by using an altered metB allele that uses preferentially or exclusively H 2 S and thus produces homocysteine from O-succinyl-homoserine as has been described in WO 2004/076659, the contents of which are incorporated herein by reference.
• the sulfur source used for the fermentative production of L-methionine, its precursors or compounds derived thereof, may be an of the following or a combination thereof: sulfate, thiosulfate, hydrogen sulfide, dithionate dithionite sulfite.
• the sulfur source may be sulfate and/or thiosulfate.
• culture and ‘fermentation’ are used indifferently to denote the growth of a microorganism on an appropriate culture-medium containing a simple carbon source.
• a simple carbon source is a source of carbon that can be used by those skilled in the art to obtain normal growth of a microorganism, in particular of a bacterium.
• it can be an assimilable sugar such as glucose, galactose, sucrose, lactose or molasses, or by-products of these sugars.
• An especially preferred simple carbon source is glucose.
• Another preferred simple carbon source is sucrose.
• the bacteria may be fermented at a temperature between 20° C. and 55° C., preferentially between 25° C. and 40° C., and more specifically about 30° C. for C. gluiamicum and about 37° C. for E. coli.
• the fermentation is generally conducted it fermenters with an inorganic culture medium of known defined composition adapted to the bacteria used, containing at least one simple carbon source, and if necessary a co-substrate necessary or the production of the metabolite.
• the inorganic culture medium for E. coli can be of identical or similar composition to an M9 medium (Anderson, 194 , Proc. Natl. Acad. Sci. USA 32:120-128), an M63 medium (Miller, 1992, A Short Course in Bacterial Genetics: A Laboratory Manual and Handbook for Escherichia coli and Related Bacteria, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.) or a medium such as defined by Schaefer et al. (1999 , Anal. Biochem. 270: 88-96).
• the inorganic culture medium for C. glutamicum can be of identical or similar composition to BMCG medium (Liebl et al, 1989, Appl. Microbiol. Biotechnol. 32: 205-210) or to a medium such as that described by Riedel et al. (2001 , J. Mol. Microbiol. Biotechnol. 3: 573-583).
• the media can be supplemented to compensate, for auxotropbies introduced by mutations.
• L-methionine After fermentation L-methionine, its precursors or compounds derived thereof, is/are recovered and purified if necessary.
• the method for the recovery and purification of the produced compound such as methionine in the culture media are well known to those skilled in the art.
• the biomass may be retained during the purification of the fermentation product.
• optical microorganism describes the microorganism into which the above described modifications are integrated leading to the best industrial performance for the production of the desired metabolite(s) and possibly the lowest production of sideproducts.
• the organism is either E. coli or C. glutamicum or Saccharomyces cerevisiae.
• the organisms is E. coli.
• PtrcmetF R (SEQ ID NO 1) GCCAGGCTCTGATTCAGGGCATCCCGCTGGCTGGCGTGAAAAAAGCTCAT aatatacctccttattccacac cgagccggatgattaat cagctc TGTAGGCTGGAGCTGCTTCG with:
• Ptrc-metF F (SEQ ID NO 2) ccttcatctttacatctggacgtctaaacggatagatgtgcacaacacaa catataactacaagcgattgatgaggtaaggt tcacactggctcaccttcg ggtgggcctttctgc CATATGAATATCCTCCTTAG with:
• the oligonucleotides Ptrc-metF F and Ptr-metF R were used to amplify the kanamycin resistance cassette from the plasmid pKD4.
• the PCR product obtained was then introduced by electroporation into the strain MG1655 metA*11 ⁇ metJ (pKD46), in which the Red recombinase enzyme expressed permits the homologous recombination.
• the kanamycin resistant transformants were selected and the insertion of the resistance cassette was verified by a PCR analysis with the oligonucleotides Ptrc-metFv F and Ptrc-metFv R defined below.
• Ptrc-metFv F (SEQ ID NO 3): GCCCGGTACTCATGTTTTCGGGTTTATGG (homologous to the sequence from 4129866 to 4129894).
• Ptrc-metFv R (SEQ ID NO 4): CCGTTATTCCAGTAGTCGCGTGCAATGG (homologous to the sequence from 4130524 to 4130497).
• the resulting strain was called MG1655 metA*11 ⁇ metJ Ptrc-metF:Km.
• BspH1thrA (SEQ ID NO 5): ttaTCATGAgagtgttgaagttcggcggtacatcagtggc Sma1thrA (SEQ ID NO 6): ttaCCCGGGccgccgcccgagcacatcaaacccgacgc
• the PCR amplified fragment was cut with the restriction enzymes BspHI and SmaI and cloned into the NcoI/SmaI sites of the vector pTRC99A (Stratagene).
• the plasmid pME011 was constructed as follows.
• the plasmid pCL1920 was PCR amplified using the oligonucleotides PME101F and PME101R and the BstZ171-XmnI fragment from the vector pTRC99A harboring the lacI gene and the Ptrc promoter were inserted into the amplified vector.
• the resulting vector and the vector harboring the thrA gene were restricted by ApaI and SmaI Land the thrA containing fragment was cloned into the vector PME101.
• the mutation F318S was introduced by site-directed mutagenesis (Stratagene) using the oligonucleotides ThrAF F318S and ThrAR F318S, resulting in the vector pME101-thrA*1.
• PME101F (SEQ ID NO 7): Ccgacagtaagacgggtaagcctg PME101R (SEQ ID NO 8): Agcttagtaaagccctcgctag ThrAF F318S (SmaI) (SEQ ID NO 9): Ccaatctgaataacatggcaatg tcc agcgtttctgg cccggg ThrAR F318S (SmaI) (SEQ ID NO 10): Cccggg ccagaaacgc tgga cattgccatgttattcagattgg pME101-thrA*1-cysE
• pME101-thrA*1-cysE the cysE gene was amplified by PCR using oligonucleotides Ome. B001 and Ome B002, the PCR-product was cut with the restriction enzyme PvuII and cloned into the SmaI site of the vector pME101-thrA*1 resulting in the vector pME101-thrA 1-cysE.
• DiclR-metHF (SEQ ID NO 13) gcaccagaatacgttcatttaactgcgcacgcagttgttccactttgctg ct cat GTCTGT GTACATGCAACCCCACAC CGAGCCGG ATGATTAAT CAGCTC TGTAGGCTGGAGCTGCTTCG with:
• iclR-metHF (SEQ ID NO 14) GCTTTTACCACAGATGCGTTTATGCCAGTATGGTTTGTTGAATTTTTATT AAATCTGGGTTGAGCGTGTCGGGAGCAAGT CATATGAATATCCTCCTTAG with:
• the oligonucleotides DiclR-metHF and iclR-metHF were used to amplify the kanamycin resistance cassette from the plasmid pKD4.
• the PCR product obtained is then introduced by electroporation into the strain MG1655 metA*11 ⁇ metJ (pKD46), in which the Red recombinase enzyme was expressed permitting the homologous recombination.
• Kanamycin resistant transformants are selected and the insertion of the resistance cassette was verified by a PCR analysis with the oligonucleotides iclF and iclR defined below.
• iclF (SEQ ID NO 15): CCTTTGAGGTCGCATGGCCAGTCGGC (homologous to the sequence from 4221558 to 4221533).
• iclR (SEQ ID NO 16): GCTTTTTAATAGAGGCGTCGCCAGCTCCTTGCC (homologous to the sequence from 4219917 to 4219949).
• the resulting strain was called MG1655 metA*11 ⁇ metJ Ptrc-metH:Km Construction of MG1655 metA*11 ⁇ metJ::Cm Ptrc-metF:Km Ptrc-metH
• the plasmid pCP20 carrying FLP recombinase acting at the FRT sites of the chloramphenicol resistance cassette was introduced into the recombinant strain by electroporation. After a series of cultures at 42° C., the loss of the two cassettes was verified by PCR analysis. The strain retained was designated MG1655 metA*11 ⁇ metJ Ptrc-metH.
• Kanamycin resistant transformants were selected and the presence of the promoter construct Ptrc-metF:Km was verified by PCR analysis with the oligonucleotides Ptrc-metFv F and Ptrc-metFv R, described above.
• the strain retain d was designated MG1655 metA*11 ⁇ metJ::Cm Ptrc-metH Ptrc-metF:Km.
• Ptrc-cysM F (SEQ ID NO 17) gcctgatgcgacgcttgcgcgtcttatcaggtctacaggttacaaacctt gccat aatatacctccttaccacac gagccggatgattaat cagctc CATATGAATATCCTCCTTAG with:
• Ptrc-cysM R (SEQ ID NO 18) ggttgagtgaatgttaaacgcccggaggcgcttcccgcgatccgggcttt t TATCACACTGGCTCACCTTCGGGTGGGCCTTTCTGC TGTAGGCTGGAGC TGCTTCG with:
• the oligonucleotides Ptrc-cysM F and Ptrc cysM R were used to amplify the kanamycin resistance cassette from the plasmid pKD4.
• the PCR product obtained was then introduced by electroporation into the strain MG1655 metA*11 ⁇ metJ (pKD46), in which the Red recombinase enzyme was expressed permitting homologous recombination. Kanamycin resistant transformants were then selected and the insertion of the resistance cassette was verified by PCR analysis with the oligonucleotides Ptrc-cysMv F and Ptrc-cysMv R defined below.
• Ptrc-cysMv F (SEQ ID NO 19) ggtgacaagaatcagttccgc (homologous to the sequence from 2537262 to 2537282).
• Ptrc-cysMv R (SEQ ID NO 20) GCGTTTATTCGTTGGTCTGC (homologous to the sequence from 2537833 to 2537814).
• the resulting strain is called MG1655 metA*11 ⁇ metJ Ptrc-cysM::Km. Construction of MG1655 metA*11 ⁇ metJ Ptrc-metF Ptrc-metH Ptrc-cysM:Km
• Production strains were initially evaluated in small Erlenmeyer flasks.
• a preculture was grown in LB medium with 2.5 g/l glucose and used to inoculate an overnight culture in minimal medium PC1.
• This culture serve to inoculate a 50 ml culture to an of 0.2 in medium PC1 supplemented with 0.01 g.L ⁇ vitamin B12. If indicated ammonium sulfate was replaced by 5.6 g/l ammonium thiosulfate.
• Spectinomycin was added if necessary at a concentration of 100 mg/l.
• At an OD600 of 4.5 to 5 extracellular amino acids were quantified by HPLC after OPA/Fmoc derivatization and other relevant metabolites were analyzed using GC-MS after silylation.
• the amount of methionine is increases upon overexpression of cysE; cysE and metH or cysE, metH and altered expression of metF altogether.
• Enhanced expression of cysM can further increase methionine production.
• Certain strains produced higher amounts of methionine in the presence of thiosulfate. The highest methionine production is obtained, when cysE, cysM and metH are overexpressed and metF expression is under the control of the Ptrc promoter in the presence of thiosulfate. Isoleucine production is drastically reduced upon expression of cysE and metH, indicating reduced ⁇ -elimination activity.
• Overexpression of cysM reduces ⁇ -elimination in a strain overexpressing cysE and metH and expressing metF from a heterologous promoter.
• E. coli strains were cultured in minimal medium as described above and harvested at mid log phase. Cells were resuspended in cold potassium phosphate buffer and sonicated on ice (Branson sonifier, 70W). After centrifugation, proteins contained in the supernatants we quantified (Bradford, 1976).
• vitamin B12-dependent methionine synthase activity 100 ⁇ l extract were assayed in 100 mM potassium phosphate pH 7.2, 1 mM homocysteine, 0.25 mM methyltetrahydrofolate, 50 ⁇ M vitamin B12, 20 ⁇ M S-adenosyl-methionine and 25 mM DTT for 10 minutes at 37° C. Protein was precipitated with acetone and the produced methionine was detected by GC-MS after derivatization with a silylating reagent.
• the temperature of the culture was maintained constant at 37° C. and the pH was permanently adjusted to values between 6.5 and 8, preferentially 6.7 using an NH 4 OH solution.
• the agitation rate was maintained at 600 rpm during the batch phase and was increased to up to 1000 rpm at the end of the fed-batch phase.
• the concentration of dissolved oxygen was maintained at values between 20 and 4%, preferentially 30% saturation by using a gas controller.
• the fed-batch was started with an initial flow rate between 0.1 and 1.5 ml/h, preferentially 0.43 ml/h and a sigmoidal (24 h) increase up to flow rate values between 0.5 and 5.8 ml/h, preferentially 1.7 ml/h.
• the precise feeding conditions were calculate by the formula below:
• Q(t) is the feeding flow rate in mL/h for a batch volume of 150 mL
• P1 is between 0.025 and 0.35, preferentially 0.10.
• P2 is between 0.400 and 5.600, preferentially 1.100.
• P3 is between 0.068 and 0.95, preferentially 0.270.
• P4 is between 1.250 and 17.5, preferentially 5.000.
• FB medium containing glucose at concentrations between 300 and 800 g/l (preferentially 500 g/L) was used.
• Methionine titers obtained in Fed-batch fermentations of strains overexpressing cysE, and metH or metF under a heterologous promoter or a combination of the three.
• Ref corresponds to MG1655 metA*11 ⁇ metJ.
• Strains were grown in the presence of thiosulfate (T) or sulfate (S).
• the stain that produced the highest amount of methionine in the 300 mL fermentor was subsequently tested under production conditions in a 2.5 L fermentor (PIERRE GUERIN) using a fed batch protocol.
• the temperature of the culture was maintained constant at 37° C. and the pH was permanently adjusted to values between 6.3 and 8, preferentially 6.8 using an NH 4 OH 28% solution.
• the initial agitation rate was set at 200 rpm during the batch phase and was increased to up to 1200 rpm during the fed-batch phase.
• the initial airflow rate was set at 40 Nl/h during the batch phase and was increased to up to 250 Nl/h during the fed-batch-phase.
• the concentration of dissolved oxygen was maintained at values between 20 and 40% saturation, preferentially 30% by increasing the agitation rate and the airflow rate.
• the fed-batch was started with an initial flow rate between 0.5 and 4 ml/h, preferentially 1.0 ml/h and an exponential increase (15 h) up to flow rate values between 3 and 35 ml/h, preferentially 0.1 nl/h. At this point, the flow rate was maintained constant for 10 to 45 hours, preferentially 30 h.
• For the feeding FB type T2 was used (See table 8) containing glucose at concentrations between 300 and 800 g/l, preferentially 750 g/l.

Landscapes

• Organic Chemistry (AREA)
• Chemical & Material Sciences (AREA)
• Engineering & Computer Science (AREA)
• Zoology (AREA)
• Life Sciences & Earth Sciences (AREA)
• Wood Science & Technology (AREA)
• Chemical Kinetics & Catalysis (AREA)
• Microbiology (AREA)
• General Chemical & Material Sciences (AREA)
• Biotechnology (AREA)
• Health & Medical Sciences (AREA)
• Biochemistry (AREA)
• Bioinformatics & Cheminformatics (AREA)
• General Engineering & Computer Science (AREA)
• General Health & Medical Sciences (AREA)
• Genetics & Genomics (AREA)
• Preparation Of Compounds By Using Micro-Organisms (AREA)
• Micro-Organisms Or Cultivation Processes Thereof (AREA)

Applications Claiming Priority (1)

Related Parent Applications (1)

Related Child Applications (1)

Publications (2)

Family

ID=37508334

Family Applications (2)

Family Applications After (1)

Country Status (11)

Cited By (3)

Families Citing this family (72)

Citations (13)

Family Cites Families (7)

• 2006
  • 2006-01-04 WO PCT/EP2006/050033 patent/WO2007077041A1/fr active Application Filing
  • 2006-01-04 DK DK10187418.8T patent/DK2314710T3/en active
  • 2006-01-04 CN CN2006800503269A patent/CN101351558B/zh not_active Expired - Fee Related
  • 2006-01-04 BR BRPI0620880A patent/BRPI0620880B1/pt not_active IP Right Cessation
  • 2006-01-04 EP EP10187418.8A patent/EP2314710B1/fr not_active Not-in-force
  • 2006-01-04 EP EP06707666.1A patent/EP1969130B1/fr not_active Not-in-force
  • 2006-01-04 JP JP2008548953A patent/JP5172697B2/ja not_active Expired - Fee Related
  • 2006-01-04 US US12/159,846 patent/US8389250B2/en active Active
  • 2006-01-04 PL PL06707666T patent/PL1969130T3/pl unknown
  • 2006-01-04 ES ES06707666.1T patent/ES2459617T3/es active Active
• 2007
  • 2007-01-04 AR ARP070100036A patent/AR058914A1/es not_active Application Discontinuation
  • 2007-01-04 MY MYPI20070009A patent/MY148979A/en unknown
• 2013
  • 2013-01-09 US US13/737,188 patent/US9187775B2/en not_active Expired - Fee Related

Patent Citations (14)

Non-Patent Citations (5)

Also Published As

Similar Documents

Legal Events