WO2015190584A1 - 前立腺がんの検出キット又はデバイス及び検出方法 - Google Patents
前立腺がんの検出キット又はデバイス及び検出方法 Download PDFInfo
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- WO2015190584A1 WO2015190584A1 PCT/JP2015/066964 JP2015066964W WO2015190584A1 WO 2015190584 A1 WO2015190584 A1 WO 2015190584A1 JP 2015066964 W JP2015066964 W JP 2015066964W WO 2015190584 A1 WO2015190584 A1 WO 2015190584A1
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Definitions
- the present invention relates to a kit or device for detecting prostate cancer, which comprises a nucleic acid capable of specifically binding to a specific miRNA, and a nucleic acid that is used for examining the presence or absence of prostate cancer in a subject.
- the present invention relates to a method for detecting prostate cancer, which comprises measuring the expression level of the miRNA using.
- the prostate is an organ that forms part of male semen and is located under the bladder and in front of the rectum.
- Prostate cancer is a disease in which the cells of this prostate repeatedly proliferate. According to cancer statistics by region in Japan disclosed by the National Cancer Center Information Center for Cancer Control, the National Cancer Center, the number of affected people with prostate cancer is 51,534, It is said that 1 in 14 people is affected, and the number of affected cases in men is the fourth most cancerous site. In addition, the number of deaths due to prostate cancer is 10,823, and the number of deaths in men is the sixth most cancerous site. In the United States, it is said that about 1 in 7 men will develop prostate cancer, especially in the elderly, and 6 out of 10 men will be diagnosed with prostate cancer at age 65 and over. (Non-Patent Document 1). The estimated number of people suffering from prostate cancer in the United States in 2014 reaches 233,000, of which about 29,480 people die (Non-patent Document 1).
- the degree of progression of prostate cancer is defined in Non-Patent Document 2, and includes tumor spread (T1a-c, T2a-c, T3a-b, T4), lymph node metastasis (N0, N1), distant metastasis (M0, M1a to c), etc., stage I (T1 to T2a / N0 / M0), stage II (T2b to c / N0 / M0), stage III (T3 / N0 / M0), stage IV (T4 / N0 / M0 and N1 and cM1).
- tumor spread T1a-c, T2a-c, T3a-b, T4
- N0, N1a to c lymph node metastasis
- M0, M1a to c distant metastasis
- stage I T1 to T2a / N0 / M0
- stage II T2b to c / N0 / M0
- stage III T3 / N0 / M
- Non-patent Document 1 Since most prostate cancers progress relatively slowly, the 5-year relative survival rate is almost 100%, which is one of the best prognosis cancers (Non-patent Document 1). However, some prostate cancers progress relatively quickly and cause various disorders and symptoms. Prostate cancers with distant metastases in stage 4 have a 5 year relative survival rate of 28%. Low (Non-Patent Document 1).
- prostate cancer treatment in principle, there are surgical treatment, radiation treatment, endocrine therapy (hormone therapy), and even waiting treatment that does not perform special treatment and continues to follow up while monitoring the tumor marker PSA .
- endocrine therapy hormone therapy
- waiting treatment that does not perform special treatment and continues to follow up while monitoring the tumor marker PSA .
- elective radiation therapy external radiation therapy
- internal radiation therapy brachytherapy
- radical prostatectomy CADPE
- cryosurgery etc.
- Non-Patent Document 1 a PSA test, which is a blood tumor marker, is widely used for a primary test for prostate cancer.
- the PSA measurement value is high, rectal examination and transrectal prostate ultrasonography are performed, and further, when a prostate cancer is suspected, a biopsy is performed as a definitive diagnosis.
- image examination such as CT examination, MRI examination, and bone scintigraphy examination is also performed.
- PSA a prostate-specific antigen
- the normal blood PSA concentration of general men is 4 ng / mL or less, and prostate cancer is suspected if this standard value is exceeded (Non-patent Document 1).
- the blood PSA concentration is widely used because it is useful because it rises even in asymptomatic early prostate cancer and correlates with the degree of cancer progression.
- the American Cancer Society recommends early detection of prostate cancer and recommends that subjects who wish to screen for prostate cancer should undergo a PSA test (Non-patent Document 1).
- Patent Document 1 discloses hsa-miR-760, hsa-miR-920, has-miR-887-3p, hsa-miR-486-3p, hsa-miR-663b, hsa-miR-187-5p in blood, hsa-miR-1231, hsa-miR-371a-5p, has-miR-575, hsa-miR-615-5p, hsa-miR-711, hsa-miR-939-5p, hsa-miR-1203, hsa- In addition to prostate cancer, methods for detecting Wilms tumor and COPD using miR-1225-3p, hsa-miR-1225-5p, hsa-miR-1915-5p, etc. have been shown.
- Patent Document 2 discloses a method in which vesicles in blood are isolated using EpCam, and prostate cancer and the like are detected using miRNA such as hsa-miR-92b-5p contained in the vesicles.
- Patent Document 3 reports that prostate cancer is discriminated by combining the expression level of PCA3 gene and the expression level of miR-141.
- An object of the present invention is to find a novel prostate cancer tumor marker and provide a method capable of effectively detecting prostate cancer using a nucleic acid capable of specifically binding to the marker.
- a tumor marker test for prostate cancer a PSA test is widely used.
- the PSA test is known to determine that prostate cancer is positive by biopsy even in 15% of men with a blood concentration reference value of 4 ng / mL or less. Both are known to have high false positives because the blood PSA concentration increases in men with benign prostatic hyperplasia and prostatitis, and in general male elderly people (Non-patent Document 1).
- a cancer other than prostate cancer is mistakenly detected, it will also lead to a false positive.
- Non-patent Document 3 Such a high false positive in the PSA test leads to overdiagnosis and overtreatment, and various sequelae due to unnecessary prostate cancer treatment have recently been regarded as a problem (Non-patent Document 3).
- Non-patent Document 3 According to a large-scale study that recruited more than 5,000 subjects (Non-patent Document 3), the specific PSA test performance is low for prostate cancer with a low sensitivity of 20.5% and high malignancy.
- the significance of tumor marker measurement as a preoperative examination is considered to be limited.
- microRNA microRNA
- Patent Document 1 discloses hsa-miR-760, hsa-miR-920, has-miR-887-3p, hsa-miR-486-3p, hsa-miR-663b, hsa-miR-187-5p in blood, hsa-miR-1231, hsa-miR-371a-5p, has-miR-575, hsa-miR-615-5p, hsa-miR-711, hsa-miR-939-5p, hsa-miR-1203, hsa- In addition to prostate cancer, methods for detecting Wilms tumor and COPD using miR-1225-3p, hsa-miR-1225-5p, hsa-miR-1915-5p, etc. have been shown.
- Patent Document 1 describes many miRNAs, there is no direct description that the miRNA marker is a prostate cancer marker, and the miRNA marker is
- Patent Document 2 discloses a method of detecting vesicles in blood using EpCam and detecting prostate cancer using miRNA such as hsa-miR-92b-5p contained in vesicles.
- the miRNA marker has not been reproduced and verified in an independent sample group, and the criteria for detecting prostate cancer are not described.
- Patent Document 3 specifically states that prostate cancer can be discriminated with 100% sensitivity and specificity by combining miR-141 and PCA3 expression levels, but it is simple and highly accurate with a single marker. There is no description that can be distinguished.
- Non-Patent Document 4 is cited in Patent Document 3, but Non-Patent Document 4 reports prostate cancer discrimination by miR-141 in serum, and the accuracy of the discrimination is 100% specificity. In this case, the sensitivity is 60%.
- the subject sample of the PCA3 test that is generally used at present is urine, and in particular, urine after digital rectal examination is used.
- the target sample for prostate cancer discrimination by miR-141 is blood (serum) as described above, and in order to obtain a high sensitivity / specificity result by combining both, it is necessary to collect two types of samples. is there.
- the present inventors have found several genes that can be used as prostate cancer detection markers from blood that can be collected in a minimally invasive manner, and have nucleic acids that can specifically bind to these genes. By using it, it was found that prostate cancer can be detected significantly, and the present invention has been completed.
- the present invention has the following features.
- miR-4443 is hsa-miR-4443
- miR-1908-5p is hsa-miR-1908-5p
- miR-4257 is hsa-miR-4257
- miR-3197 is hsa-miR -3197
- miR-3188 is hsa-miR-3188
- miR-4649-5p is hsa-miR-4649-5p
- miR-1343-3p is hsa-miR-1333-3p
- miR -6861-5p is hsa-miR-6861-5p
- miR-1343-5p is hsa-miR-1343-5p
- miR-642b-3p is hsa-miR-642b-3p
- miR-6741 -5p is hsa-miR-6741-5p
- miR-4745-5p is h a-miR-4745-5p
- MiR-3928-3p is hsa-miR-3928-3p
- m R-1227-5p is hsa-miR-1227-5p
- miR-4492 is hsa-miR-4492
- miR-296-3p is hsa-miR-296-3p
- miR-6769a-5p is hsa-miR-6769a-5p
- miR-6889-5p is hsa-miR-6889-5p
- miR-4632-5p is hsa-miR-4632-5p
- miR-4505 is hsa-miR- 4505
- miR-3154 is hsa-miR-3154
- miR-3648 is hsa-miR-3648
- miR-4442 is hsa-miR-4442
- miR-3141 is hsa-miR-3141 Yes
- miR-7113-3p
- miR-642a-3p is hsa-miR-642a-3p
- miR-762 is hsa-miR-762
- miR-1202 is hsa-miR-1202
- miR-3162-5p Is hsa-miR-3162-5p and miR-3196 is hsa-miR-31 96
- miR-3622a-5p is hsa-miR-3622a-5p
- miR-3665 is hsa-miR-3665
- miR-3940-5p is hsa-miR-3940-5p
- miR- 4294 is hsa-miR-4294
- miR-4466 is hsa-miR-4466
- miR-4476 is hsa-miR-4476
- miR-4723-5p is hsa-miR-4723-5p
- miR-4725-3p is h
- the kit is another prostate cancer marker, miR-615-5p, miR-486-3p, miR-1225-3p, miR-760, miR-187-5p, miR-1203, miR- 7110-5p, miR-371a-5p, miR-939-5p, miR-575, miR-92b-5p, miR-887-3p, miR-920, miR-1915-5p, miR-1231, miR-663b, Specifically binds to at least one polynucleotide selected from the group consisting of miR-1225-5p, miR-16-5p, miR-423-5p, miR-451a, miR-564 and miR-671-5p.
- the kit according to any one of (1) to (3), further comprising a possible nucleic acid.
- miR-615-5p is hsa-miR-615-5p
- miR-486-3p is hsa-miR-486-3p
- miR-1225-3p is hsa-miR-1225-3p
- MiR-760 is hsa-miR-760
- miR-187-5p is hsa-miR-187-5p
- miR-1203 is hsa-miR-1203
- miR-7110-5p is hsa-miR.
- miR-371a-5p is hsa-miR-371a-5p
- miR-939-5p is hsa-miR-939-5p
- miR-575 is hsa-miR-575
- MiR-92b-5p is hsa-miR-92b-5p
- miR-887-3p is hsa-miR-88.
- miR-920 is hsa-miR-920
- miR-1915-5p is hsa-miR-1915-5p
- miR-1231 is hsa-miR-1231
- miR-663b is hsa MiR-663b
- miR-1225-5p is hsa-miR-1225-5p
- miR-16-5p is hsa-miR-16-5p
- miR-423-5p is hsa-miR-423 -5p
- miR-451a is hsa-miR-451a
- miR-564 is hsa-miR-564
- miR-671-5p is hsa-miR-671-5p
- the kit is another prostate cancer marker, miR-4763-3p, miR-3656, miR-4488, miR-125a-3p, miR-1469, miR-1228-5p, miR-6798- 5p, miR-1268b, miR-6732-5p, miR-1915-3p, miR-4433b-3p, miR-1207-5p, miR-4433-3p, miR-6879-5p, miR-4417, miR-30c- 1-3p, miR-4638-5p, miR-6088, miR-4270, miR-6782-5p, miR-665, miR-486-5p, miR-4655-5p, miR-1275, miR-6806-5p, miR-614, miR-3937, miR-6752-5p, miR-6 At least one polynucleotide selected from the group consisting of 71-5p, miR-4450, miR-211-3p, miR-663a, miR-6842-5p, miR
- miR-4663-3p is hsa-miR-4763-3p
- miR-3656 is hsa-miR-3656
- miR-4488 is hsa-miR-4488
- miR-125a-3p is hsa MiR-125a-3p
- miR-1469 is hsa-miR-1469
- miR-1228-5p is hsa-miR-1228-5p
- miR-6798-5p is hsa-miR-6798-5p
- MiR-1268b is hsa-miR-1268b
- miR-6732-5p is hsa-miR-6732-5p
- miR-1915-3p is hsa-miR-1915-3p
- miR-4433b -3p is hsa-miR-4433b-3p
- miR-1207- p is hsa-miR-1207-5p
- the kit comprises at least two or more nucleic acids capable of specifically binding to each of at least two or more polynucleotides selected from all prostate cancer markers according to (1) or (2).
- miR-4443 is hsa-miR-4443
- miR-1908-5p is hsa-miR-1908-5p
- miR-4257 is hsa-miR-4257
- miR-3197 is hsa-miR -3197
- miR-3188 is hsa-miR-3188
- miR-4649-5p is hsa-miR-4649-5p
- miR-1343-3p is hsa-miR-1333-3p
- miR -6861-5p is hsa-miR-6861-5p
- miR-1343-5p is hsa-miR-1343-5p
- miR-642b-3p is hsa-miR-642b-3p
- miR-6741 ⁇ 5p is hsa-miR-6741-5p and miR-4745-5p is sa-miR-4745-5p
- the device is another prostate cancer marker, miR-615-5p, miR-486-3p, miR-1225-3p, miR-760, miR-187-5p, miR-1203, miR- 7110-5p, miR-371a-5p, miR-939-5p, miR-575, miR-92b-5p, miR-887-3p, miR-920, miR-1915-5p, miR-1231, miR-663b, Specifically binds to at least one polynucleotide selected from the group consisting of miR-1225-5p, miR-16-5p, miR-423-5p, miR-451a, miR-564 and miR-671-5p.
- the device according to any one of (11) to (13), further comprising a possible nucleic acid.
- miR-615-5p is hsa-miR-615-5p
- miR-486-3p is hsa-miR-486-3p
- miR-1225-3p is hsa-miR-1225-3p
- MiR-760 is hsa-miR-760
- miR-187-5p is hsa-miR-187-5p
- miR-1203 is hsa-miR-1203
- miR-7110-5p is hsa-miR -7110-5p
- miR-371a-5p is hsa-miR-371a-5p
- miR-939-5p is hsa-miR-939-5p
- miR-575 is hsa-miR-575
- MiR-92b-5p is hsa-miR-92b-5p
- miR-887-3p is hsa-miR-8 7-3p
- miR-920 is hsa
- the device is another prostate cancer marker, miR-4763-3p, miR-3656, miR-4488, miR-125a-3p, miR-1469, miR-1228-5p, miR-6798- 5p, miR-1268b, miR-6732-5p, miR-1915-3p, miR-4433b-3p, miR-1207-5p, miR-4433-3p, miR-6879-5p, miR-4417, miR-30c- 1-3p, miR-4638-5p, miR-6088, miR-4270, miR-6782-5p, miR-665, miR-486-5p, miR-4655-5p, miR-1275, miR-6806-5p, miR-614, miR-3937, miR-6752-5p, miR At least one polynucleotide selected from the group consisting of 6771-5p, miR-4450, miR-211-3p, miR-663a, miR-6842-5p, miR
- miR-4763-3p is hsa-miR-4763-3p
- miR-3656 is hsa-miR-3656
- miR-4488 is hsa-miR-4488
- miR-125a-3p is hsa MiR-125a-3p
- miR-1469 is hsa-miR-1469
- miR-1228-5p is hsa-miR-1228-5p
- miR-6798-5p is hsa-miR-6798-5p
- MiR-1268b is hsa-miR-1268b
- miR-6732-5p is hsa-miR-6732-5p
- miR-1915-3p is hsa-miR-1915-3p
- miR-4433b -3p is hsa-miR-4433b-3p
- miR-1207 5p is hsa-miR-1207-5p
- miR-6752-5p is hsa-miR-6752-5p
- miR-677-5-5 is hsa-miR-677-5p
- miR-4450 is hsa-miR-4450
- miR -211-3p is hsa-miR-211-3p
- miR-663a is hsa-miR-663a
- miR-6842-5p is hsa-miR-6842-5p
- miR-7114-5p is hsa -MiR-7114-5p
- miR-6679-5p is hsa-miR
- the device comprises at least two or more nucleic acids capable of specifically binding to each of at least two or more polynucleotides selected from all prostate cancer markers according to (11) or (12) The device according to any one of (11) to (21).
- a method for detecting prostate cancer comprising evaluating in step 1.
- polynucleotide is used for nucleic acids including RNA, DNA, and RNA / DNA (chimera).
- the DNA includes any of cDNA, genomic DNA, and synthetic DNA.
- the RNA includes total RNA, mRNA, rRNA, miRNA, siRNA, snoRNA, snRNA, non-coding RNA, and synthetic RNA.
- synthetic DNA and “synthetic RNA” are artificially generated using, for example, an automatic nucleic acid synthesizer based on a predetermined base sequence (which may be either a natural sequence or a non-natural sequence). It refers to the prepared DNA and RNA.
- non-natural sequence is intended to be used in a broad sense, and is a sequence (for example, including one or more nucleotide substitutions, deletions, insertions and / or additions) that differs from the natural sequence. That is, it includes a mutant sequence), a sequence containing one or more modified nucleotides (ie, a modified sequence), and the like.
- the polynucleotide is used interchangeably with the nucleic acid.
- a “fragment” is a polynucleotide having a base sequence of a continuous part of a polynucleotide, and desirably has a length of 15 bases or more, preferably 17 bases or more, more preferably 19 bases or more. .
- RNA and double-stranded DNA include not only RNA and double-stranded DNA, but also each single-stranded DNA such as positive strand (or sense strand) or complementary strand (or antisense strand) constituting the same. It is intended to be used.
- the length is not particularly limited.
- “gene” refers to double-stranded DNA containing human genomic DNA, single-stranded DNA containing cDNA (positive strand), and single-stranded DNA having a sequence complementary to the positive strand. All of DNA (complementary strand), microRNA (miRNA), and fragments thereof, and transcripts thereof are included.
- the “gene” is not limited to a “gene” represented by a specific nucleotide sequence (or sequence number), but also RNAs having biological functions equivalent to RNA encoded by them, such as homologs (ie, homologs) Or an ortholog), variants such as genetic polymorphisms, and “nucleic acids” encoding derivatives.
- the “nucleic acid” encoding such homologue, variant or derivative is, for example, the base sequence represented by any one of SEQ ID NOs: 1 to 684 under the stringent conditions described later, or the base A “nucleic acid” having a base sequence that hybridizes with a complementary sequence of a base sequence in which u is t in the sequence can be mentioned.
- the “gene” does not ask whether the functional region is different, and may include, for example, an expression control region, a coding region, an exon, or an intron. Further, the “gene” may be contained in the cell, may be released outside the cell and may be present alone, or may be encapsulated in a vesicle called an exosome.
- exosome is a vesicle encased in a lipid bilayer secreted from a cell. Exosomes are derived from multivesicular endosomes, and when released to the extracellular environment, they may contain biological substances such as “genes” such as RNA and DNA and proteins. It is known that exosomes are contained in body fluids such as blood, serum, plasma, serum and lymph.
- RNA refers to RNA synthesized using a DNA sequence of a gene as a template.
- RNA is synthesized in such a manner that RNA polymerase binds to a site called a promoter located upstream of the gene and ribonucleotides are bound to the 3 'end so as to be complementary to the DNA base sequence.
- This RNA includes not only the gene itself but also the entire sequence from the transcription start point to the end of the poly A sequence, including the expression control region, coding region, exon or intron.
- microRNA is a protein complex that is transcribed as a hairpin-like RNA precursor, cleaved by a dsRNA cleaving enzyme having RNase III cleaving activity, and called RISC. 15-25 base non-coding RNA that is incorporated into and is involved in the translational repression of mRNA.
- miRNA is not limited to “miRNA” represented by a specific nucleotide sequence (or sequence number), but also a precursor of the “miRNA” (pre-miRNA, pri-miRNA), and Also included are miRNAs that have equivalent biological functions, such as homologs (ie, homologs or orthologs), variants such as genetic polymorphisms, and derivatives. Such precursors, homologues, mutants or derivatives can be specifically identified by miRBase release 20 (http://www.mirbase.org/), and under stringent conditions described later.
- miRNA having a base sequence that hybridizes with a complementary sequence of any one of the specific base sequences represented by any of SEQ ID NOs: 1 to 684.
- the “miRNA” used herein may be a gene product of a miR gene, and such a gene product is a mature miRNA (for example, 15 to 15 involved in the suppression of translation of mRNA as described above). 25-base, or 19-25 base non-coding RNA) or miRNA precursors (eg, pre-miRNA or pri-miRNA as described above).
- the “probe” includes a polynucleotide used for specifically detecting RNA produced by gene expression or a polynucleotide derived therefrom and / or a polynucleotide complementary thereto.
- the “primer” includes a polynucleotide that specifically recognizes and amplifies RNA generated by gene expression or a polynucleotide derived therefrom and / or a polynucleotide complementary thereto.
- a complementary polynucleotide is a polynucleotide comprising a base sequence defined by any of SEQ ID NOs: 1 to 684 or a base sequence in which u is t in the base sequence.
- the base sequence is complementary to the full-length sequence or a partial sequence thereof (for convenience, this is referred to as the positive strand) based on the base pair relationship such as A: T (U), G: C.
- such a complementary strand is not limited to the case where it forms a completely complementary sequence with the target positive strand base sequence, but has a complementary relationship that allows hybridization with the target normal strand under stringent conditions. There may be.
- stringent conditions refers to the degree to which a nucleic acid probe is larger than other sequences (for example, the average of background measurement values + standard error of background measurement values ⁇ 2 or more measurement values) The conditions for hybridizing to the target sequence. Stringent conditions are sequence-dependent and depend on the environment in which hybridization is performed. By controlling the stringency of the hybridization and / or wash conditions, target sequences that are 100% complementary to the nucleic acid probe can be identified. Specific examples of “stringent conditions” will be described later.
- the “Tm value” means a temperature at which the double-stranded portion of the polynucleotide is denatured into a single strand and the double strand and the single strand are present at a ratio of 1: 1.
- variant means, in the case of a nucleic acid, a natural variant caused by polymorphism, mutation, etc., or any of the nucleotide sequences of SEQ ID NOs: 1 to 684, or u in the nucleotide sequence.
- a variant comprising a deletion, substitution, addition or insertion of 1, 2 or 3 or more bases in the base sequence of t, or a partial sequence thereof, or a precursor RNA of any sequence of SEQ ID NOs: 1 to 684 (Premature miRNA) base sequence, a base sequence in which u is t in the base sequence, or a variant containing a deletion, substitution, addition or insertion of one or more bases in the partial sequence, or the base sequence About 90% or more, about 95% or more, about 97% or more, about 98% or more, about 99% or more Nucleotide sequence or a polynucleotide or a nucleic acid which hybridises under stringent conditions of oligonucleotides as previously defined comprising a subsequence thereof.
- “several” means an integer of about 10, 9, 8, 7, 6, 5, 4, 3 or 2.
- a mutant can be prepared using a well-known technique such as site-directed mutagenesis or PCR-based mutagenesis.
- % identity can be determined using the above-described BLAST or FASTA protein or gene search system with or without introducing a gap (Zheng Zhang et al., 2000, J. Comput. Biol., 7, p203-214; Altschul, SF et al., 1990, Journal of Molecular Biology, 215, p403-410; Pearson, WR et al., 1988. (Proc. Natl. Acad. Sci. USA, Vol. 85, p2444-448).
- derivative refers to a modified nucleic acid, a non-limiting group such as a labeled derivative such as a fluorophore, a modified nucleotide (for example, a halogen, an alkyl such as methyl, an alkoxy such as methoxy, a group such as thio, carboxymethyl, etc.
- derivatives containing PNA peptide nucleic acid; Nielsen, PE, etc.). 1991, Science, 254, p1497-500), LNA (locked nucleic acid; Obika, S. et al., 1998, Tetrahedron Lett., 39, p5401-5404) and the like.
- the “nucleic acid” that can specifically bind to a polynucleotide selected from miRNA that is the prostate cancer marker is a nucleic acid synthesized or prepared, specifically, “nucleic acid probe” or Including the “primer” to detect the presence or absence of prostate cancer in the subject, or the presence or absence of prostate cancer, the degree of disease, the presence or absence of improvement of prostate cancer, the degree of improvement, It is used directly or indirectly to diagnose susceptibility to cancer treatment or to screen candidate substances useful for the prevention, amelioration or treatment of prostate cancer.
- nucleotides, oligonucleotides and polynucleotides capable of binding are used as probes for detecting the gene expressed in vivo, in tissues or cells based on the above properties, and for amplifying the gene expressed in vivo. It can be effectively used as a primer.
- the term “detection” can be replaced by the term inspection, measurement, detection or decision support. Further, in this specification, the term “evaluation” is used in a meaning including supporting diagnosis or evaluation based on a test result or a measurement result.
- subject includes humans, primates including chimpanzees, pet animals such as dogs and cats, livestock animals such as cows, horses, sheep and goats, rodents such as mice and rats, etc. Means a mammal.
- healthy body also means an animal that is such a mammal and does not suffer from the cancer to be detected.
- P or “P value” refers to the probability that, in a statistical test, a statistic more extreme than the statistic actually calculated from the data under the null hypothesis is observed. Indicates. Therefore, it can be considered that the smaller the “P” or “P value”, the more significant the difference between the comparison objects.
- sensitivity means a value of (number of true positives) / (number of true positives + number of false negatives). High sensitivity makes it possible to detect prostate cancer early, leading to complete removal of the cancerous part and a reduction in the recurrence rate.
- specificity means (number of true negatives) / (number of true negatives + number of false positives). If the specificity is high, it is possible to prevent unnecessary additional tests by misidentifying a healthy body as a prostate cancer patient, thereby reducing the burden on the patient and reducing medical costs.
- accuracy means a value of (number of true positives + number of true negatives) / (number of all cases). The accuracy indicates the rate at which the discrimination results for all the samples are correct, and is a first index for evaluating the detection performance.
- the “specimen” to be determined, detected or diagnosed changes the expression of the gene of the present invention as prostate cancer occurs, prostate cancer progresses, and the therapeutic effect on prostate cancer is exerted.
- tissue and biomaterial Specifically, prostate tissue and surrounding vessels, lymph nodes and organs, organs suspected of metastasis, skin, and body fluids such as blood, urine, saliva, sweat, and tissue exudates, and serum and plasma prepared from blood Others include stool and hair.
- it refers to a biological sample extracted from these, specifically genes such as RNA and miRNA.
- hsa-miR-4443 gene or “hsa-miR-4443” refers to the hsa-miR-4443 gene (miRBase Accession No. MIMAT0018961) described in SEQ ID NO: 1 or other biological species. Homologs or orthologs are included.
- the hsa-miR-4443 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- “hsa-miR-4443” is known as “hsa-mir-4443” (miRBase Accession No. MI0016786, SEQ ID NO: 188) having a hairpin-like structure as a precursor.
- hsa-miR-1908-5p gene or “hsa-miR-1908-5p” refers to the hsa-miR-1908-5p gene (miRBase Accession No. 2) described in SEQ ID NO: 2. MIMAT0007881) and other species homologues or orthologues are included.
- the hsa-miR-1908-5p gene can be obtained by the method described in Bar M et al., 2008, Stem Cells, 26, p2496-2505.
- “hsa-miR-1908-5p” “hsa-mir-1908” (miRBase Accession No. MI0008329, SEQ ID NO: 189) having a hairpin-like structure as a precursor is known.
- hsa-miR-4257 gene or “hsa-miR-4257” refers to the hsa-miR-4257 gene (miRBase Accession No. MIMAT0016878) described in SEQ ID NO: 3 and other biological species. Homologs or orthologs are included.
- the hsa-miR-4257 gene can be obtained by the method described in Goff LA et al., 2009, PLoS One, Vol. 4, e7192.
- “hsa-miR-4257” is known as “hsa-mir-4257” (miRBase Accession No. MI0015856, SEQ ID NO: 190) having a hairpin-like structure as a precursor.
- hsa-miR-3197 gene or “hsa-miR-3197” refers to the hsa-miR-3197 gene (miRBase Accession No. MIMAT0015082) described in SEQ ID NO: 4 and other biological species. Homologs or orthologs are included.
- the hsa-miR-3197 gene can be obtained by the method described in Stark MS et al., 2010, PLoS One, 5, e9685.
- hsa-miR-3197 “hsa-mir-3197” (miRBase Accession No. MI0014245, SEQ ID NO: 191) having a hairpin-like structure as a precursor is known.
- hsa-miR-3188 gene or “hsa-miR-3188” refers to the hsa-miR-3188 gene (miRBase Accession No. MIMAT0015070) described in SEQ ID NO: 5 and other biological species. Homologs or orthologs are included.
- the hsa-miR-3188 gene can be obtained by the method described in Stark MS et al., 2010, PLoS One, 5, e9685.
- hsa-miR-3188 “hsa-mir-3188” (miRBase Accession No. MI0014232, SEQ ID NO: 192) having a hairpin-like structure as a precursor is known.
- hsa-miR-4649-5p gene or “hsa-miR-4649-5p” refers to the hsa-miR-4649-5p gene described in SEQ ID NO: 6 (miRBase Accession No. MIMAT0019711) and other species homologs or orthologs.
- the hsa-miR-4649-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4649-5p” is known as “hsa-mir-4649” (miRBase Accession No. MI0017276, SEQ ID NO: 193) having a hairpin-like structure as a precursor.
- hsa-miR-1343-3p gene or “hsa-miR-1343-3p” refers to the hsa-miR-1343-3p gene (miRBase Accession No. 7) described in SEQ ID NO: 7. MIMAT0019776) and other species homologs or orthologs.
- the hsa-miR-1343-3p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-1343-3p” “hsa-mir-1343” (miRBase Accession No. MI0017320, SEQ ID NO: 194) having a hairpin-like structure as a precursor is known.
- hsa-miR-6861-5p gene or “hsa-miR-6861-5p” refers to the hsa-miR-6861-5p gene described in SEQ ID NO: 8 (miRBase Accession No. MIMAT0027623) and other species homologues or orthologues are included.
- the hsa-miR-6861-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6861-5p “hsa-mir-6861” (miRBase Accession No. MI0022708, SEQ ID NO: 195) having a hairpin-like structure as a precursor is known.
- hsa-miR-1343-5p gene or “hsa-miR-1343-5p” refers to the hsa-miR-1343-5p gene described in SEQ ID NO: 9 (miRBase Accession No. 1). MIMAT0027038) and other species homologs or orthologs.
- the hsa-miR-1343-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-1343-5p” is known as “hsa-mir-1343” (miRBase Accession No. MI0017320, SEQ ID NO: 194) having a hairpin-like structure as a precursor.
- hsa-miR-642b-3p gene or “hsa-miR-642b-3p” refers to the hsa-miR-642b-3p gene described in SEQ ID NO: 10 (miRBase Accession No. MIMAT0018444) and other species homologues or orthologues are included.
- the hsa-miR-642b-3p gene can be obtained by the method described in Witten D et al., 2010, BMC Biol, Vol. 8, p58.
- “hsa-miR-642b-3p” is known as “hsa-mir-642b” (miRBase Accession No. MI0016685, SEQ ID NO: 196) having a hairpin-like structure as a precursor.
- hsa-miR-6741-5p gene or “hsa-miR-6741-5p” refers to the hsa-miR-6741-5p gene described in SEQ ID NO: 11 (miRBase Accession No. MIMAT0027383) and other species homologs or orthologs are included.
- the hsa-miR-6741-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6741-5p” is known as “hsa-mir-6741” (miRBase Accession No. MI0022586, SEQ ID NO: 197) having a hairpin-like structure as a precursor.
- hsa-miR-4745-5p gene or “hsa-miR-4745-5p” refers to the hsa-miR-4745-5p gene described in SEQ ID NO: 12 (miRBase Accession No. 1). MIMAT0019878) and other species homologues or orthologues are included.
- the hsa-miR-4745-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4745-5p” “hsa-mir-4745” (miRBase Accession No. MI0017384, SEQ ID NO: 198) having a hairpin-like structure as a precursor is known.
- hsa-miR-6826-5p gene or “hsa-miR-6826-5p” refers to the hsa-miR-6826-5p gene described in SEQ ID NO: 13 (miRBase Accession No. MIMAT0027552) and other species homologs or orthologs.
- the hsa-miR-6826-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6826-5p “hsa-mir-6826” (miRBase Accession No. MI0022671, SEQ ID NO: 199) having a hairpin-like structure as a precursor is known.
- hsa-miR-3663-3p gene or “hsa-miR-3663-3p” refer to the hsa-miR-3663-3p gene (miRBase Accession No. 4) described in SEQ ID NO: 14. MIMAT0018085) and other species homologs or orthologs.
- the hsa-miR-3663-3p gene can be obtained by the method described in Liao JY et al., 2010, PLoS One, 5, e10563.
- “hsa-miR-3663-3p” is known as “hsa-mir-3663” (miRBase Accession No. MI0016064, SEQ ID NO: 200) having a hairpin-like structure as a precursor.
- hsa-miR-3131 gene or “hsa-miR-3131” refers to the hsa-miR-3131 gene (miRBase Accession No. MIMAT0014996) described in SEQ ID NO: 15 or other species. Homologs or orthologs are included.
- the hsa-miR-3131 gene can be obtained by the method described in Stark MS et al., 2010, PLoS One, 5, e9685.
- “hsa-miR-3131” is known as “hsa-mir-3131” (miRBase Accession No. MI0014151, SEQ ID NO: 201) having a hairpin-like structure as a precursor.
- hsa-miR-92a-2-5p gene or “hsa-miR-92a-2-5p” refers to the hsa-miR-92a-2-5p described in SEQ ID NO: 16. Genes (miRBBase Accession No. MIMAT0004508) and other species homologues or orthologues are included.
- the hsa-miR-92a-2-5p gene can be obtained by the method described in Murelatos Z et al., 2002, Genes Dev, 16, p720-728.
- hsa-miR-92a-2-5p “hsa-mir-92a-2” (miRBase Accession No. MI00000094, SEQ ID NO: 202) having a hairpin-like structure as a precursor is known.
- hsa-miR-4258 gene or “hsa-miR-4258” refers to the hsa-miR-4258 gene (miRBase Accession No. MIMAT0016879) described in SEQ ID NO: 17 and other biological species. Homologs or orthologs are included.
- the hsa-miR-4258 gene can be obtained by the method described in Goff LA et al., 2009, PLoS One, Vol. 4, e7192.
- hsa-miR-4258 “hsa-mir-4258” (miRBase Accession No. MI0015857, SEQ ID NO: 203) having a hairpin-like structure as a precursor is known.
- hsa-miR-4448 gene or “hsa-miR-4448” refers to the hsa-miR-4448 gene (miRBase Accession No. MIMAT0018967) described in SEQ ID NO: 18 and other biological species. Homologs or orthologs are included.
- the hsa-miR-4448 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- “Hsa-miR-4448” is known as “hsa-mir-4448” (miRBase Accession No. MI0016791, SEQ ID NO: 204) having a hairpin-like structure as a precursor.
- hsa-miR-6125 gene or “hsa-miR-6125” refers to the hsa-miR-6125 gene (miRBase Accession No. MIMAT0024598) described in SEQ ID NO: 19 and other biological species. Homologs or orthologs are included.
- the hsa-miR-6125 gene can be obtained by the method described in Smith JL et al., 2012, J Virol, 86, p5278-5287.
- “hsa-miR-6125” is known as “hsa-mir-6125” (miRBase Accession No. MI0021259, SEQ ID NO: 205) having a hairpin-like structure as a precursor.
- hsa-miR-6880-5p gene or “hsa-miR-6880-5p” refers to the hsa-miR-6880-5p gene described in SEQ ID NO: 20 (miRBase Accession No. MIMAT0027660) and other species homologs or orthologs.
- the hsa-miR-6880-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6880-5p “hsa-mir-6880” (miRBase Accession No. MI0022727, SEQ ID NO: 206) having a hairpin-like structure as a precursor is known.
- hsa-miR-6132 gene or “hsa-miR-6132” refers to the hsa-miR-6132 gene (miRBase Accession No. MIMAT0024616) described in SEQ ID NO: 21 and other biological species. Homologs or orthologs are included.
- the hsa-miR-6132 gene can be obtained by the method described in Dannemann M et al., 2012, Genome Biol Evol, Vol. 4, p552-564.
- “hsa-miR-6132” is known as “hsa-mir-6132” (miRBase Accession No. MI0021277, SEQ ID NO: 207) having a hairpin-like structure as a precursor.
- hsa-miR-4467 gene or “hsa-miR-4467” refers to the hsa-miR-4467 gene (miRBase Accession No. MIMAT0018994) described in SEQ ID NO: 22 or other biological species. Homologs or orthologs are included.
- the hsa-miR-4467 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-mir-4467 (miRBase Accession No. MI0016818, SEQ ID NO: 208) having a hairpin-like structure as a precursor is known.
- hsa-miR-6749-5p gene or “hsa-miR-6749-5p” refers to the hsa-miR-6749-5p gene described in SEQ ID NO: 23 (miRBase Accession No. MIMAT0027398) and other species homologs or orthologs.
- the hsa-miR-6749-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6749-5p” is known as “hsa-mir-6749” (miRBase Accession No. MI0022594, SEQ ID NO: 209) having a hairpin-like structure as a precursor.
- hsa-miR-2392 gene or “hsa-miR-2392” refers to the hsa-miR-2392 gene (miRBase Accession No. MIMAT0019043) described in SEQ ID NO: 24 or other biological species. Homologs or orthologs are included.
- the hsa-miR-2392 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-miR-2392 “hsa-mir-2392” (miRBase Accession No. MI0016870, SEQ ID NO: 210) having a hairpin-like structure as a precursor is known.
- hsa-miR-1273g-3p gene or “hsa-miR-1273g-3p” refers to the hsa-miR-1273g-3p gene described in SEQ ID NO: 25 (miRBase Accession No. MIMAT0022742) and other species homologues or orthologues are included.
- the hsa-miR-1273g-3p gene can be obtained by the method described in Reshmi G et al., 2011, Genomics, 97, p333-340.
- hsa-miR-1273g-3p “hsa-mir-1273g” (miRBase Accession No. MI0018003, SEQ ID NO: 211) having a hairpin-like structure as a precursor is known.
- hsa-miR-4746-3p gene or “hsa-miR-4746-3p” refers to the hsa-miR-4746-3p gene described in SEQ ID NO: 26 (miRBase Accession No. MIMAT0019881) and other species homologues or orthologues are included.
- the hsa-miR-4746-3p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4746-3p” “hsa-mir-4746” (miRBase Accession No. MI0017385, SEQ ID NO: 212) having a hairpin-like structure as a precursor is known.
- hsa-miR-1914-3p gene or “hsa-miR-1914-3p” refers to the hsa-miR-1914-3p gene described in SEQ ID NO: 27 (miRBase Accession No. MIMAT0007890) and other species homologs or orthologs.
- the hsa-miR-1914-3p gene can be obtained by the method described in Bar M et al., 2008, Stem Cells, Vol. 26, p2496-2505.
- “hsa-miR-1914-3p” is known as “hsa-mir-1914” (miRBase Accession No. MI0008335, SEQ ID NO: 213) having a hairpin-like structure as a precursor.
- hsa-miR-7845-5p gene or “hsa-miR-7845-5p” refers to the hsa-miR-7845-5p gene described in SEQ ID NO: 28 (miRBase Accession No. MIMAT0030420) and other species homologs or orthologs.
- the hsa-miR-7845-5p gene can be obtained by the method described in Ple H et al., 2012, PLoS One, Vol. 7, e50746.
- hsa-miR-7845-5p “hsa-mir-7845” (miRBase Accession No. MI0025515, SEQ ID NO: 214) having a hairpin-like structure as a precursor is known.
- hsa-miR-6726-5p gene or “hsa-miR-6726-5p” refers to the hsa-miR-6726-5p gene described in SEQ ID NO: 29 (miRBase Accession No. MIMAT0027353) and other species homologues or orthologues are included.
- the hsa-miR-6726-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6726-5p “hsa-mir-6726” (miRBase Accession No. MI0022571, SEQ ID NO: 215) having a hairpin-like structure as a precursor is known.
- hsa-miR-128-2-5p gene or “hsa-miR-128-2-5p” refers to the hsa-miR-128-2-5p described in SEQ ID NO: 30. Genes (miRBBase Accession No. MIMAT0031095) and other species homologues or orthologues are included.
- the hsa-miR-128-2-5p gene can be obtained by the method described in Lagos-Quintana M et al., 2002, Curr Biol, Vol. 12, p735-739.
- “hsa-miR-128-2-5p” is known as “hsa-mir-128-2” (miRBase Accession No. MI000027, SEQ ID NO: 216) having a hairpin-like structure as a precursor.
- hsa-miR-4651 gene or “hsa-miR-4651” refers to the hsa-miR-4651 gene (miRBase Accession No. MIMAT0019715) described in SEQ ID NO: 31 and other biological species. Homologs or orthologs are included.
- the hsa-miR-4651 gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- hsa-miR-4651 “hsa-mir-4651” (miRBase Accession No. MI0017279, SEQ ID NO: 217) having a hairpin-like structure as a precursor is known.
- hsa-miR-6765-3p gene or “hsa-miR-6765-3p” refers to the hsa-miR-6765-3p gene described in SEQ ID NO: 32 (miRBase Accession No. MIMAT0027431) and other species homologues or orthologues are included.
- the hsa-miR-6765-3p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6765-3p “hsa-mir-6765” (miRBase Accession No. MI0022610, SEQ ID NO: 218) having a hairpin-like structure as a precursor is known.
- hsa-miR-3185 gene or “hsa-miR-3185” refers to the hsa-miR-3185 gene (miRBase Accession No. MIMAT0015065) described in SEQ ID NO: 33 and other species. Homologs or orthologs are included.
- the hsa-miR-3185 gene can be obtained by the method described in Stark MS et al., 2010, PLoS One, 5, e9685.
- hsa-miR-3185 “hsa-mir-3185” (miRBase Accession No. MI0014227, SEQ ID NO: 219) having a hairpin-like structure as a precursor is known.
- hsa-miR-4792 gene or “hsa-miR-4792” refers to the hsa-miR-4792 gene (miRBase Accession No. MIMAT0019964) described in SEQ ID NO: 34 and other biological species. Homologs or orthologs are included.
- the hsa-miR-4792 gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- hsa-miR-4792 “hsa-mir-4792” (miRBase Accession No. MI0017439, SEQ ID NO: 220) having a hairpin-like structure as a precursor is known.
- hsa-miR-687-5p gene or “hsa-miR-6687-5p” refers to the hsa-miR-687-5p gene (miRBase Accession No. 5) described in SEQ ID NO: 35. MIMAT0027674) and other species homologues or orthologues are included.
- the hsa-miR-6687-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-687-5p” is known as “hsa-mir-6687” (miRBase Accession No. MI0022734, SEQ ID NO: 221) having a hairpin-like structure as a precursor.
- hsa-miR-5572 gene or “hsa-miR-5572” refers to the hsa-miR-5572 gene (miRBase Accession No. MIMAT0022260) described in SEQ ID NO: 36 or other biological species. Homologs or orthologs are included.
- the hsa-miR-5572 gene can be obtained by the method described in Tandon M, et al., 2012, Oral Dis, 18, p127-131.
- hsa-miR-5572 “hsa-mir-5572” (miRBase Accession No. MI0019117, SEQ ID NO: 222) having a hairpin-like structure as a precursor is known.
- hsa-miR-3619-3p gene or “hsa-miR-3619-3p” refers to the hsa-miR-3619-3p gene described in SEQ ID NO: 37 (miRBase Accession No. MIMAT0019219) and other species homologues or orthologues are included.
- the hsa-miR-3619-3p gene can be obtained by the method described in Witten D et al., 2010, BMC Biol, Vol. 8, p58.
- hsa-miR-3619-3p “hsa-mir-3619” (miRBase Accession No. MI0016009, SEQ ID NO: 223) having a hairpin-like structure as a precursor is known.
- hsa-miR-6780b-5p gene or “hsa-miR-6780b-5p” refers to the hsa-miR-6780b-5p gene described in SEQ ID NO: 38 (miRBase Accession No. MIMAT0027572) and other species homologues or orthologues are included.
- the hsa-miR-6780b-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6780b-5p” is known as “hsa-mir-6780b” (miRBase Accession No. MI0022681, SEQ ID NO: 224) having a hairpin-like structure as a precursor.
- hsa-miR-4707-5p gene or “hsa-miR-4707-5p” refers to the hsa-miR-4707-5p gene described in SEQ ID NO: 39 (miRBase Accession No. MIMAT0019807) and other species homologues or orthologues are included.
- the hsa-miR-4707-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4707-5p” “hsa-mir-4707” (miRBase Accession No. MI0017340, SEQ ID NO: 225) having a hairpin-like structure as a precursor is known.
- hsa-miR-8063 gene or “hsa-miR-8063” refers to the hsa-miR-8063 gene (miRBase Accession No. MIMAT0030990) described in SEQ ID NO: 40 or other biological species. Homologs or orthologs are included.
- the hsa-miR-8063 gene can be obtained by the method described in Wang HJ et al., 2013, Shock, Vol. 39, p480-487.
- hsa-miR-8063 “hsa-mir-8063” (miRBase Accession No. MI0025899, SEQ ID NO: 226) having a hairpin-like structure as a precursor is known.
- hsa-miR-4454 gene or “hsa-miR-4454” refers to the hsa-miR-4454 gene (miRBase Accession No. MIMAT0018976) described in SEQ ID NO: 41 or other species. Homologs or orthologs are included.
- the hsa-miR-4454 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-mir-4454 (miRBase Accession No. MI0016800, SEQ ID NO: 227) having a hairpin-like structure as a precursor is known.
- hsa-miR-4525 gene or “hsa-miR-4525” refers to the hsa-miR-4525 gene (miRBase Accession No. MIMAT0019064) described in SEQ ID NO: 42 or other biological species. Homologs or orthologs are included.
- the hsa-miR-4525 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-miR-4525 “hsa-mir-4525” (miRBase Accession No. MI0016892, SEQ ID NO: 228) having a hairpin-like structure as a precursor is known.
- hsa-miR-7975 gene or “hsa-miR-7975” refers to the hsa-miR-7975 gene (miRBase Accession No. MIMAT0031178) described in SEQ ID NO: 43 and other biological species. Homologs or orthologs are included.
- the hsa-miR-7975 gene can be obtained by the method described in Velthut-Meikas A et al., 2013, Mol Endocrinol, online version.
- hsa-miR-7975 “hsa-mir-7975” (miRBase Accession No. MI0025751, SEQ ID NO: 229) having a hairpin-like structure as a precursor is known.
- hsa-miR-744-5p gene or “hsa-miR-744-5p” refers to the hsa-miR-744-5p gene described in SEQ ID NO: 44 (miRBase Accession No. MIMAT0004945) and other species homologs or orthologs.
- the hsa-miR-744-5p gene can be obtained by the method described in Berezikov E et al., 2006, Genome Res, 16, p1299-1298.
- “hsa-miR-744-5p” is known as “hsa-mir-744” (miRBase Accession No. MI0005559, SEQ ID NO: 230) having a hairpin-like structure as a precursor.
- hsa-miR-3135b gene or “hsa-miR-3135b” refers to the hsa-miR-3135b gene (miRBase Accession No. MIMAT0018985) described in SEQ ID NO: 45 and other species. A homolog or ortholog is included.
- the hsa-miR-3135b gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-mir-3135b (miRBase Accession No. MI0016809, SEQ ID NO: 231) having a hairpin-like structure as a precursor is known.
- hsa-miR-4648 gene or “hsa-miR-4648” refers to the hsa-miR-4648 gene (miRBase Accession No. MIMAT0019710) described in SEQ ID NO: 46 and other biological species. Homologs or orthologs are included.
- the hsa-miR-4648 gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4648” is known as “hsa-mir-4648” (miRBase Accession No. MI0017275, SEQ ID NO: 232) having a hairpin-like structure as a precursor.
- hsa-miR-6816-5p gene or “hsa-miR-6816-5p” refers to the hsa-miR-6816-5p gene described in SEQ ID NO: 47 (miRBase Accession No. MIMAT0027532) and other species homologues or orthologues are included.
- the hsa-miR-6816-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6816-5p” is known as “hsa-mir-6816” (miRBase Accession No. MI0022661, SEQ ID NO: 233) having a hairpin-like structure as a precursor.
- hsa-miR-4741 gene or “hsa-miR-4741” refers to the hsa-miR-4741 gene (miRBase Accession No. MIMAT0019871) described in SEQ ID NO: 48 and other biological species. Homologs or orthologs are included.
- the hsa-miR-4741 gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4741” is known as “hsa-mir-4741” (miRBase Accession No. MI0017379, SEQ ID NO: 234) having a hairpin-like structure as a precursor.
- hsa-miR-7150 gene or “hsa-miR-7150” refers to the hsa-miR-7150 gene (miRBase Accession No. MIMAT0028211) described in SEQ ID NO: 49 or other species. Homologs or orthologs are included.
- the hsa-miR-7150 gene can be obtained by the method described in Oulas A et al., 2009, Nucleic Acids Res, 37, p3276-3287.
- hsa-miR-7150 “hsa-mir-7150” (miRBase Accession No. MI0023610, SEQ ID NO: 235) having a hairpin-like structure as a precursor is known.
- hsa-miR-6791-5p gene or “hsa-miR-6791-5p” refers to the hsa-miR-6791-5p gene described in SEQ ID NO: 50 (miRBase Accession No. MIMAT0027482) and other species homologues or orthologues are included.
- the hsa-miR-6791-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6791-5p “hsa-mir-6791” (miRBase Accession No. MI0022636, SEQ ID NO: 236) having a hairpin-like structure as a precursor is known.
- hsa-miR-1247-3p gene or “hsa-miR-1247-3p” refers to the hsa-miR-1247-3p gene (miRBase Accession No. 5) described in SEQ ID NO: 51. MIMAT0022721) and other species homologues or orthologues are included.
- the hsa-miR-1247-3p gene can be obtained by the method described in Morin RD et al., 2008, Genome Res, 18, p610-621.
- “hsa-miR-1247-3p” is known as “hsa-mir-1247” (miRBase Accession No. MI0006382, SEQ ID NO: 237) having a hairpin-like structure as a precursor.
- hsa-miR-7777 gene or “hsa-miR-7777” refers to the hsa-miR-7777 gene (miRBase Accession No. MIMAT0031180) described in SEQ ID NO: 52 or other biological species. Homologs or orthologs are included.
- the hsa-miR-7777 gene can be obtained by the method described in Velthut-Meikas A et al., 2013, Mol Endocrinol, online version.
- hsa-miR-7777 “hsa-mir-7777” (miRBase Accession No. MI0025753, SEQ ID NO: 238) having a hairpin-like structure as a precursor is known.
- hsa-miR-4497 gene or “hsa-miR-4497” refers to the hsa-miR-4497 gene (miRBase Accession No. MIMAT0019032) described in SEQ ID NO: 53 and other species. Homologs or orthologs are included.
- the hsa-miR-4497 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-miR-4497 “hsa-mir-4497” (miRBase Accession No. MI0016859, SEQ ID NO: 239) having a hairpin-like structure as a precursor is known.
- hsa-miR-6090 gene or “hsa-miR-6090” refers to the hsa-miR-6090 gene (miRBase Accession No. MIMAT0023715) described in SEQ ID NO: 54 and other biological species. Homologs or orthologs are included.
- the hsa-miR-6090 gene can be obtained by the method described in Yoo JK et al., 2012, Stem Cells Dev, 21, p2049-2057.
- hsa-miR-6090 “hsa-mir-6090” (miRBase Accession No. MI0020367, SEQ ID NO: 240) having a hairpin-like structure as a precursor is known.
- hsa-miR-6781-5p gene or “hsa-miR-6781-5p” refers to the hsa-miR-6781-5p gene described in SEQ ID NO: 55 (miRBase Accession No. MIMAT0027462) and other species homologues or orthologues are included.
- the hsa-miR-6781-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6781-5p “hsa-mir-6781” (miRBase Accession No. MI0022626, SEQ ID NO: 241) having a hairpin-like structure as a precursor is known.
- hsa-miR-6870-5p gene or “hsa-miR-6870-5p” refers to the hsa-miR-6870-5p gene described in SEQ ID NO: 56 (miRBase Accession No. MIMAT0027640) and other species homologues or orthologues are included.
- the hsa-miR-6870-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6870-5p” is known as “hsa-mir-6870” (miRBase Accession No. MI0022717, SEQ ID NO: 242) having a hairpin-like structure as a precursor.
- hsa-miR-6729-5p gene or “hsa-miR-6729-5p” refers to the hsa-miR-6729-5p gene described in SEQ ID NO: 57 (miRBase Accession No. MIMAT0027359) and other species homologues or orthologues are included.
- the hsa-miR-6729-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6729-5p” is known as “hsa-mir-6729” (miRBase Accession No. MI0022574, SEQ ID NO: 243) having a hairpin-like structure as a precursor.
- hsa-miR-4530 gene or “hsa-miR-4530” refers to the hsa-miR-4530 gene (miRBase Accession No. MIMAT0019069) described in SEQ ID NO: 58 and other biological species. Homologs or orthologs are included.
- the hsa-miR-4530 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-mir-4530 (miRBase Accession No. MI0016897, SEQ ID NO: 244) having a hairpin-like structure as a precursor is known.
- hsa-miR-7847-3p gene or “hsa-miR-7847-3p” refers to the hsa-miR-7847-3p gene described in SEQ ID NO: 59 (miRBase Accession No. MIMAT0030422) and other species homologues or orthologues are included.
- the hsa-miR-7847-3p gene can be obtained by the method described in Ple H et al., 2012, PLoS One, Vol. 7, e50746.
- hsa-miR-7847-3p “hsa-mir-7847” (miRBase Accession No. MI0025517, SEQ ID NO: 245) having a hairpin-like structure as a precursor is known.
- hsa-miR-6825-5p gene or “hsa-miR-6825-5p” refers to the hsa-miR-6825-5p gene described in SEQ ID NO: 60 (miRBase Accession No. MIMAT0027550) and other species homologues or orthologues are included.
- the hsa-miR-6825-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6825-5p” is known as “hsa-mir-6825” (miRBase Accession No. MI0022670, SEQ ID NO: 246) having a hairpin-like structure as a precursor.
- hsa-miR-4675 gene or “hsa-miR-4675” refers to the hsa-miR-4675 gene (miRBase Accession No. MIMAT0019756) described in SEQ ID NO: 61 or other biological species. Homologs or orthologs are included.
- the hsa-miR-4675 gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4673” is known as “hsa-mir-4675” (miRBase Accession No. MI0017305, SEQ ID NO: 247) having a hairpin-like structure as a precursor.
- hsa-miR-3913 gene or “hsa-miR-3913” refers to the hsa-miR-3913 gene (miRBase Accession No. MIMAT0018191) described in SEQ ID NO: 62 or other biological species. Homologs or orthologs are included.
- the hsa-miR-3917 gene can be obtained by the method described in Creighton CJ et al., 2010, PLoS One, 5, e9637.
- hsa-miR-3917 is known as “hsa-mir-3917” (miRBase Accession No. MI0016423, SEQ ID NO: 248) having a hairpin-like structure as a precursor.
- hsa-miR-4707-3p gene or “hsa-miR-4707-3p” refers to the hsa-miR-4707-3p gene described in SEQ ID NO: 63 (miRBase Accession No. MIMAT0019808) and other species homologues or orthologues are included.
- the hsa-miR-4707-3p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4707-3p” “hsa-mir-4707” (miRBase Accession No. MI0017340, SEQ ID NO: 225) having a hairpin-like structure as a precursor is known.
- hsa-miR-685-5p gene or “hsa-miR-685-5p” refers to the hsa-miR-685-5p gene described in SEQ ID NO: 64 (miRBase Accession No. MIMAT0027670) and other species homologs or orthologs.
- the hsa-miR-685-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6885-5p “hsa-mir-6885” (miRBase Accession No. MI0022732, SEQ ID NO: 249) having a hairpin-like structure as a precursor is known.
- hsa-miR-6722-3p gene or “hsa-miR-6722-3p” refers to the hsa-miR-6722-3p gene described in SEQ ID NO: 65 (miRBase Accession No. MIMAT0025854) and other species homologs or orthologs are included.
- the hsa-miR-6722-3p gene can be obtained by the method described in Li Y et al., 2012, Gene, 497, p330-335.
- hsa-miR-6722-3p “hsa-mir-6722” (miRBase Accession No. MI0022557, SEQ ID NO: 250) having a hairpin-like structure as a precursor is known.
- hsa-miR-4516 gene or “hsa-miR-4516” refers to the hsa-miR-4516 gene (miRBase Accession No. MIMAT0019053) described in SEQ ID NO: 66 or other biological species. Homologs or orthologs are included.
- the hsa-miR-4516 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-miR-4516 “hsa-mir-4516” (miRBase Accession No. MI0016882, SEQ ID NO: 251) having a hairpin-like structure as a precursor is known.
- hsa-miR-6757-5p gene or “hsa-miR-6757-5p” refers to the hsa-miR-6757-5p gene described in SEQ ID NO: 67 (miRBase Accession No. MIMAT0027414) and other species homologues or orthologues are included.
- the hsa-miR-6757-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6757-5p “hsa-mir-6757” (miRBase Accession No. MI0022602, SEQ ID NO: 252) having a hairpin-like structure as a precursor is known.
- hsa-miR-6840-3p gene or “hsa-miR-6840-3p” refers to the hsa-miR-6840-3p gene described in SEQ ID NO: 68 (miRBase Accession No. MIMAT0027583) and other species homologs or orthologs.
- the hsa-miR-6840-3p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6840-3p “hsa-mir-6840” (miRBase Accession No. MI0022686, SEQ ID NO: 253) having a hairpin-like structure as a precursor is known.
- hsa-miR-5195-3p gene or “hsa-miR-5195-3p” refers to the hsa-miR-5195-3p gene described in SEQ ID NO: 69 (miRBase Accession No. MIMAT0021127) and other species homologs or orthologs are included.
- the hsa-miR-5195-3p gene can be obtained by the method described in Schotte D et al., 2011, Leukemia, 25, p1389-1399.
- “hsa-miR-5195-3p” is known as “hsa-mir-5195” (miRBase Accession No. MI0018174, SEQ ID NO: 254) having a hairpin-like structure as a precursor.
- hsa-miR-6756-5p gene or “hsa-miR-6756-5p” refers to the hsa-miR-6756-5p gene described in SEQ ID NO: 70 (miRBase Accession No. MIMAT0027412) and other species homologues or orthologues are included.
- the hsa-miR-6756-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6756-5p “hsa-mir-6756” (miRBase Accession No. MI0022601, SEQ ID NO: 255) having a hairpin-like structure as a precursor is known.
- hsa-miR-6800-5p gene or “hsa-miR-6800-5p” refers to the hsa-miR-6800-5p gene described in SEQ ID NO: 71 (miRBase Accession No. MIMAT0027500) and other species homologs or orthologs.
- the hsa-miR-6800-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6800-5p” is known as “hsa-mir-6800” (miRBase Accession No. MI0022645, SEQ ID NO: 256) having a hairpin-like structure as a precursor.
- hsa-miR-6727-5p gene or “hsa-miR-6727-5p” refers to the hsa-miR-6727-5p gene described in SEQ ID NO: 72 (miRBase Accession No. MIMAT0027355) and other species homologues or orthologues are included.
- the hsa-miR-6727-5p gene can be obtained by the method described in Ladwig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6727-5p “hsa-mir-6727” (miRBase Accession No. MI0022572, SEQ ID NO: 257) having a hairpin-like structure as a precursor is known.
- hsa-miR-6126 gene or “hsa-miR-6126” refers to the hsa-miR-6126 gene (miRBase Accession No. MIMAT0024599) described in SEQ ID NO: 73 or other biological species. Homologs or orthologs are included.
- the hsa-miR-6126 gene can be obtained by the method described in Smith JL et al., 2012, J Virol, 86, p5278-5287.
- “Hsa-miR-6126” is known as “hsa-mir-6126” (miRBase Accession No. MI0021260, SEQ ID NO: 258) having a hairpin-like structure as a precursor.
- hsa-miR-6872-3p gene or “hsa-miR-6872-3p” refers to the hsa-miR-6872-3p gene described in SEQ ID NO: 74 (miRBase Accession No. MIMAT0027645) and other species homologs or orthologs.
- the hsa-miR-6872-3p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6872-3p” is known as “hsa-mir-6872” (miRBase Accession No. MI0022719, SEQ ID NO: 259), which has a hairpin-like structure as a precursor.
- hsa-miR-4446-3p gene or “hsa-miR-4446-3p” refers to the hsa-miR-4446-3p gene described in SEQ ID NO: 75 (miRBase Accession No. MIMAT0018965) and other species homologs or orthologs.
- the hsa-miR-4446-3p gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-mir-4446 (miRBase Accession No. MI0016789, SEQ ID NO: 260) having a hairpin-like structure as a precursor is known.
- hsa-miR-1268a gene or “hsa-miR-1268a” refers to the hsa-miR-1268a gene (miRBase Accession No. MIMAT0005922) described in SEQ ID NO: 76 or other biological species. A homolog or ortholog is included.
- the hsa-miR-1268a gene can be obtained by the method described in Morin RD et al., 2008, Genome Res, 18, p610-621.
- “hsa-miR-1268a” is known as “hsa-mir-1268a” (miRBase Accession No. MI0006405, SEQ ID NO: 261) having a hairpin-like structure as a precursor.
- hsa-miR-1908-3p gene or “hsa-miR-1908-3p” refers to the hsa-miR-1908-3p gene described in SEQ ID NO: 77 (miRBase Accession No. MIMAT0026916) and other species homologs or orthologs.
- the hsa-miR-1908-3p gene can be obtained by the method described in Bar M, et al., 2008, Stem Cells, 26, p2496-2505.
- hsa-miR-1908-3p “hsa-mir-1908” (miRBase Accession No. MI0008329, SEQ ID NO: 189) having a hairpin-like structure as a precursor is known.
- hsa-miR-3679-5p gene or “hsa-miR-3679-5p” refers to the hsa-miR-3679-5p gene described in SEQ ID NO: 78 (miRBase Accession No. MIMAT0018104) and other species homologues or orthologues are included.
- the hsa-miR-3679-5p gene can be obtained by the method described in Creighton CJ et al., 2010, PLoS One, 5, e9637.
- “hsa-miR-3679-5p” is known as “hsa-mir-3679” (miRBase Accession No. MI0016080, SEQ ID NO: 262) having a hairpin-like structure as a precursor.
- hsa-miR-4534 gene or “hsa-miR-4534” refers to the hsa-miR-4534 gene (miRBase Accession No. MIMAT0019073) described in SEQ ID NO: 79 or other biological species. Homologs or orthologs are included.
- the hsa-miR-4534 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- “hsa-miR-4534” is known as “hsa-mir-4534” (miRBase Accession No. MI0016901, SEQ ID NO: 263) having a hairpin-like structure as a precursor.
- hsa-miR-4675 gene or “hsa-miR-4675” refers to the hsa-miR-4675 gene (miRBase Accession No. MIMAT0019757) described in SEQ ID NO: 80 or other biological species. Homologs or orthologs are included.
- the hsa-miR-4675 gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4675” is known as “hsa-mir-4675” (miRBase Accession No. MI0017306, SEQ ID NO: 264) having a hairpin-like structure as a precursor.
- hsa-miR-7108-5p gene or “hsa-miR-7108-5p” refers to the hsa-miR-7108-5p gene described in SEQ ID NO: 81 (miRBase Accession No. MIMAT0028113) and other species homologues or orthologues are included.
- the hsa-miR-7108-5p gene can be obtained by the method described in Ladwig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-7108-5p” is known as “hsa-mir-7108” (miRBase Accession No. MI0022959, SEQ ID NO: 265), which has a hairpin-like structure as a precursor.
- hsa-miR-6799-5p gene or “hsa-miR-6799-5p” refers to the hsa-miR-6799-5p gene described in SEQ ID NO: 82 (miRBase Accession No. MIMAT0027498) and other species homologues or orthologues are included.
- the hsa-miR-6799-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6799-5p” is known as “hsa-mir-6799” (miRBase Accession No. MI0022644, SEQ ID NO: 266) having a hairpin-like structure as a precursor.
- hsa-miR-4695-5p gene or “hsa-miR-4695-5p” refers to the hsa-miR-4695-5p gene described in SEQ ID NO: 83 (miRBase Accession No. MIMAT0019788) and other species homologues or orthologues are included.
- the hsa-miR-4695-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4695-5p” is known as “hsa-mir-4695” (miRBase Accession No. MI0017328, SEQ ID NO: 267) having a hairpin-like structure as a precursor.
- hsa-miR-3178 gene or “hsa-miR-3178” refers to the hsa-miR-3178 gene (miRBase Accession No. MIMAT0015055) described in SEQ ID NO: 84 or other biological species. Homologs or orthologs are included.
- the hsa-miR-3178 gene can be obtained by the method described in Stark MS et al., 2010, PLoS One, 5, e9685.
- hsa-miR-3178 “hsa-mir-3178” (miRBase Accession No. MI0014212, SEQ ID NO: 268) having a hairpin-like structure as a precursor is known.
- hsa-miR-5090 gene or “hsa-miR-5090” refers to the hsa-miR-5090 gene (miRBase Accession No. MIMAT0021082) described in SEQ ID NO: 85 or other biological species. Homologs or orthologs are included.
- the hsa-miR-5090 gene can be obtained by the method described in Ding N et al., 2011, J Radiat Res, 52, p425-432.
- hsa-miR-5090 “hsa-mir-5090” (miRBase Accession No. MI0017979, SEQ ID NO: 269) having a hairpin-like structure as a precursor is known.
- hsa-miR-3180 gene or “hsa-miR-3180” refers to the hsa-miR-3180 gene (miRBase Accession No. MIMAT0018178) described in SEQ ID NO: 86 or other species. A homolog or ortholog is included.
- the hsa-miR-3180 gene can be obtained by the method described in Creighton CJ et al., 2010, PLoS One, 5, e9637.
- “Hsa-miR-3180” has a hairpin-like structure as its precursor, “hsa-mir-3180-4, hsa-mir-3180-5” (miRBBase Accession No. MI0016408, MI0016409, SEQ ID NO: 270, 271) is known.
- hsa-miR-1237-5p gene or “hsa-miR-1237-5p” refers to the hsa-miR-1237-5p gene described in SEQ ID NO: 87 (miRBase Accession No. MIMAT0022946) and other species homologs or orthologs.
- the hsa-miR-1237-5p gene can be obtained by the method described in Berezikov E et al., 2007, Mol Cell, 28, p328-336.
- “hsa-miR-1237-5p” is known as “hsa-mir-1237” (miRBase Accession No. MI0006327, SEQ ID NO: 272) having a hairpin-like structure as a precursor.
- hsa-miR-4758-5p gene or “hsa-miR-4758-5p” refers to the hsa-miR-4758-5p gene described in SEQ ID NO: 88 (miRBase Accession No. MIMAT0019903) and other species homologues or orthologues are included.
- the hsa-miR-4758-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4758-5p” “hsa-mir-4758” (miRBase Accession No. MI0017399, SEQ ID NO: 273) having a hairpin-like structure as a precursor is known.
- hsa-miR-3184-5p gene or “hsa-miR-3184-5p” refers to the hsa-miR-3184-5p gene described in SEQ ID NO: 89 (miRBase Accession No. MIMAT0015064) and other species homologs or orthologs.
- the hsa-miR-3184-5p gene can be obtained by the method described in Stark MS et al., 2010, PLoS One, 5, e9685.
- “hsa-miR-3184-5p” is known as “hsa-mir-3184” (miRBase Accession No. MI0014226, SEQ ID NO: 274) having a hairpin-like structure as a precursor.
- hsa-miR-4286 gene or “hsa-miR-4286” refers to the hsa-miR-4286 gene (miRBase Accession No. MIMAT0016916) described in SEQ ID NO: 90 or other biological species. Homologs or orthologs are included.
- the hsa-miR-4286 gene can be obtained by the method described in Goff LA et al., 2009, PLoS One, Vol. 4, e7192.
- hsa-miR-4286 “hsa-mir-4286” (miRBase Accession No. MI0015894, SEQ ID NO: 275) having a hairpin-like structure as a precursor is known.
- hsa-miR-6784-5p gene or “hsa-miR-6784-5p” refer to the hsa-miR-6784-5p gene described in SEQ ID NO: 91 (miRBase Accession No. MIMAT0027468) and other species homologues or orthologues are included.
- the hsa-miR-6784-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6784-5p” is known as “hsa-mir-6784” (miRBase Accession No. MI0022629, SEQ ID NO: 276) having a hairpin-like structure as a precursor.
- hsa-miR-6768-5p gene or “hsa-miR-6768-5p” refers to the hsa-miR-6768-5p gene described in SEQ ID NO: 92 (miRBase Accession No. MIMAT0027436) and other species homologues or orthologues are included.
- the hsa-miR-6768-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6768-5p” is known as “hsa-mir-6768” (miRBase Accession No. MI0022613, SEQ ID NO: 277) having a hairpin-like structure as a precursor.
- hsa-miR-6785-5p gene or “hsa-miR-6785-5p” refers to the hsa-miR-6785-5p gene described in SEQ ID NO: 93 (miRBase Accession No. MIMAT0027470) and other species homologs or orthologs.
- the hsa-miR-6785-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6785-5p” is known as “hsa-mir-6785” (miRBase Accession No. MI0022630, SEQ ID NO: 278) having a hairpin-like structure as a precursor.
- hsa-miR-4706 gene or “hsa-miR-4706” refers to the hsa-miR-4706 gene (miRBase Accession No. MIMAT0019806) described in SEQ ID NO: 94 or other biological species. A homolog or ortholog is included.
- the hsa-miR-4706 gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4706” is known as “hsa-mir-4706” (miRBase Accession No. MI0017339, SEQ ID NO: 279) having a hairpin-like structure as a precursor.
- hsa-miR-711 gene or “hsa-miR-711” refers to the hsa-miR-711 gene (miRBase Accession No. MIMAT0012734) described in SEQ ID NO: 95 or other biological species. Homologs or orthologs are included.
- the hsa-miR-711 gene can be obtained by the method described in Artzi S et al., 2008, BMC Bioinformatics, Vol. 9, p39.
- “hsa-miR-711” is known as “hsa-mir-711” (miRBase Accession No. MI0012488, SEQ ID NO: 280) having a hairpin-like structure as a precursor.
- hsa-miR-1260a gene or “hsa-miR-1260a” refers to the hsa-miR-1260a gene (miRBase Accession No. MIMAT0005911) described in SEQ ID NO: 96 or other biological species. Homologs or orthologs are included.
- the hsa-miR-1260a gene can be obtained by the method described in Morin RD et al., 2008, Genome Res, 18, p610-621.
- “hsa-miR-1260a” “hsa-mir-1260a” (miRBase Accession No. MI0006394, SEQ ID NO: 281) having a hairpin-like structure as a precursor is known.
- hsa-miR-6746-5p gene or “hsa-miR-6746-5p” refers to the hsa-miR-6746-5p gene described in SEQ ID NO: 97 (miRBase Accession No. MIMAT0027392) and other species homologues or orthologues are included.
- the hsa-miR-6746-5p gene can be obtained by the method described in Ladwig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6746-5p “hsa-mir-6746” (miRBase Accession No. MI0022591, SEQ ID NO: 282) having a hairpin-like structure as a precursor is known.
- hsa-miR-6089 gene or “hsa-miR-6089” refers to the hsa-miR-6089 gene (miRBase Accession No. MIMAT0023714) described in SEQ ID NO: 98 or other biological species. Homologs or orthologs are included.
- the hsa-miR-6089 gene can be obtained by the method described in Yoo JK et al., 2012, Stem Cells Dev, 21, p2049-2057.
- “hsa-miR-6089” has “hsa-mir-6089-1, hsa-mir-6089-2” (miRBase Accession No. MI0020366, MI0023563, SEQ ID NO: 283, taking a hairpin-like structure as a precursor thereof 284) is known.
- hsa-miR-6821-5p gene or “hsa-miR-6821-5p” refers to the hsa-miR-6821-5p gene described in SEQ ID NO: 99 (miRBase Accession No. MIMAT0027542) and other species homologues or orthologues are included.
- the hsa-miR-6682-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6821-5p” is known as “hsa-mir-6682” (miRBase Accession No. MI0022666, SEQ ID NO: 285) having a hairpin-like structure as a precursor.
- hsa-miR-4667-5p gene or “hsa-miR-4667-5p” refers to the hsa-miR-4667-5p gene described in SEQ ID NO: 100 (miRBase Accession No. MIMAT0019743) and other species homologues or orthologues are included.
- the hsa-miR-4667-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4667-5p” “hsa-mir-4667” (miRBase Accession No. MI0017297, SEQ ID NO: 286) having a hairpin-like structure as a precursor is known.
- hsa-miR-8069 gene or “hsa-miR-8069” refers to the hsa-miR-8069 gene (miRBase Accession No. MIMAT0030996) described in SEQ ID NO: 101 or other biological species. Homologs or orthologs are included.
- the hsa-miR-8069 gene can be obtained by the method described in Wang HJ et al., 2013, Shock, 39, p480-487.
- hsa-miR-8069 “hsa-mir-8069” (miRBase Accession No. MI0025905, SEQ ID NO: 287) having a hairpin-like structure as a precursor is known.
- hsa-miR-4726-5p gene or “hsa-miR-4726-5p” refers to the hsa-miR-4726-5p gene described in SEQ ID NO: 102 (miRBase Accession No. MIMAT0019845) and other species homologs or orthologs.
- the hsa-miR-4726-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4726-5p” is known as “hsa-mir-4726” (miRBase Accession No. MI0017363, SEQ ID NO: 288) having a hairpin-like structure as a precursor.
- hsa-miR-6124 gene or “hsa-miR-6124” refers to the hsa-miR-6124 gene (miRBase Accession No. MIMAT0024597) described in SEQ ID NO: 103 or other biological species. Homologs or orthologs are included.
- the hsa-miR-6124 gene can be obtained by the method described in Smith JL et al., 2012, J Virol, 86, p5278-5287.
- hsa-miR-6124 is known as “hsa-mir-6124” (miRBase Accession No. MI0021258, SEQ ID NO: 289) having a hairpin-like structure as a precursor.
- hsa-miR-4532 gene or “hsa-miR-4532” refers to the hsa-miR-4532 gene (miRBase Accession No. MIMAT0019071) described in SEQ ID NO: 104 or other biological species. Homologs or orthologs are included.
- the hsa-miR-4532 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-mir-4532 (miRBase Accession No. MI0016899, SEQ ID NO: 290) having a hairpin-like structure as a precursor is known.
- hsa-miR-4486 gene or “hsa-miR-4486” refers to the hsa-miR-4486 gene (miRBase Accession No. MIMAT0019020) described in SEQ ID NO: 105 and other species. A homolog or ortholog is included.
- the hsa-miR-4486 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-mir-4486 (miRBase Accession No. MI0016847, SEQ ID NO: 291) having a hairpin-like structure as a precursor is known.
- hsa-miR-4728-5p gene or “hsa-miR-4728-5p” refers to the hsa-miR-4728-5p gene described in SEQ ID NO: 106 (miRBase Accession No. MIMAT0019849) and other species homologues or orthologues are included.
- the hsa-miR-4728-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4728-5p” is known as “hsa-mir-4728” (miRBase Accession No. MI0017365, SEQ ID NO: 292) having a hairpin-like structure as a precursor.
- hsa-miR-4508 gene or “hsa-miR-4508” refers to the hsa-miR-4508 gene (miRBase Accession No. MIMAT0019045) described in SEQ ID NO: 107 and other biological species. Homologs or orthologs are included.
- the hsa-miR-4508 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-miR-4508 “hsa-mir-4508” (miRBase Accession No. MI0016872, SEQ ID NO: 293) having a hairpin-like structure as a precursor is known.
- hsa-miR-128-1-5p gene or “hsa-miR-128-1-5p” refers to the hsa-miR-128-1-5p set forth in SEQ ID NO: 108. Genes (miRBBase Accession No. MIMAT0026477) and other species homologues or orthologues are included.
- the hsa-miR-128-1-5p gene can be obtained by the method described in Lagos-Quintana M et al., 2002, Curr Biol, Vol. 12, p735-739. Further, “hsa-miR-128-1-5p” is known as “hsa-mir-128-1” (miRBase Accession No. MI0000447, SEQ ID NO: 294) having a hairpin-like structure as a precursor.
- hsa-miR-4513 gene or “hsa-miR-4513” refers to the hsa-miR-4513 gene (miRBase Accession No. MIMAT0019050) described in SEQ ID NO: 109 or other biological species. Homologs or orthologs are included.
- the hsa-miR-4513 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- “hsa-miR-4513” is known as “hsa-mir-4513” (miRBase Accession No. MI0016879, SEQ ID NO: 295) having a hairpin-like structure as a precursor.
- hsa-miR-6695-5p gene or “hsa-miR-6795-5p” refers to the hsa-miR-6695-5p gene (miRBase Accession No. MIMAT0027490) and other species homologs or orthologs.
- the hsa-miR-6695-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6695-5p “hsa-mir-6695” (miRBase Accession No. MI0022640, SEQ ID NO: 296) having a hairpin-like structure as a precursor is known.
- hsa-miR-4689 gene or “hsa-miR-4689” refers to the hsa-miR-4689 gene (miRBase Accession No. MIMAT0019778) described in SEQ ID NO: 111 and other biological species. Homologs or orthologs are included.
- the hsa-miR-4689 gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- hsa-miR-4689 “hsa-mir-4689” (miRBase Accession No. MI0017322, SEQ ID NO: 297) having a hairpin-like structure as a precursor is known.
- hsa-miR-6663-5p gene or “hsa-miR-6663-5p” refers to the hsa-miR-6663-5p gene described in SEQ ID NO: 112 (miRBase Accession No. MIMAT0027426) and other species homologues or orthologues are included.
- the hsa-miR-6673-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6673-5p “hsa-mir-6663” (miRBase Accession No. MI0022608, SEQ ID NO: 298) having a hairpin-like structure as a precursor is known.
- hsa-miR-8072 gene or “hsa-miR-8072” refers to the hsa-miR-8072 gene (miRBase Accession No. MIMAT0030999) described in SEQ ID NO: 113 and other biological species. Homologs or orthologs are included.
- the hsa-miR-8072 gene can be obtained by the method described in Wang HJ et al., 2013, Shock, 39, p480-487.
- hsa-miR-8072 “hsa-mir-8072” (miRBase Accession No. MI0025908, SEQ ID NO: 299) having a hairpin-like structure as a precursor is known.
- hsa-miR-6765-5p gene or “hsa-miR-6765-5p” refers to the hsa-miR-6765-5p gene described in SEQ ID NO: 114 (miRBase Accession No. MIMAT0027430) and other species homologs or orthologs.
- the hsa-miR-6765-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6765-5p “hsa-mir-6765” (miRBase Accession No. MI0022610, SEQ ID NO: 218) having a hairpin-like structure as a precursor is known.
- hsa-miR-4419b gene or “hsa-miR-4419b” refers to the hsa-miR-4419b gene (miRBase Accession No. MIMAT0019034) described in SEQ ID NO: 115 or other biological species. Homologs or orthologs are included.
- the hsa-miR-4419b gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-miR-4419b “hsa-mir-4419b” (miRBase Accession No. MI0016861, SEQ ID NO: 300) having a hairpin-like structure as a precursor is known.
- hsa-miR-7641 gene or “hsa-miR-7641” refers to the hsa-miR-7641 gene (miRBase Accession No. MIMAT0029782) described in SEQ ID NO: 116 or other biological species. Homologs or orthologs are included.
- the hsa-miR-7641 gene can be obtained by the method described in Yoo JK et al., 2013, Arch Pharm Res, 36, p353-358.
- “hsa-miR-7641” has “hsa-mir-7641-1, hsa-mir-7641-2” (miRBase Accession No. MI0024975, MI0024976, SEQ ID NO: 301, which takes a hairpin-like structure as a precursor thereof. 302) is known.
- hsa-miR-3928-3p gene or “hsa-miR-3928-3p” refers to the hsa-miR-3928-3p gene described in SEQ ID NO: 117 (miRBase Accession No. MIMAT0018205) and other species homologues or orthologues are included.
- the hsa-miR-3928-3p gene can be obtained by the method described in Creighton CJ et al., 2010, PLoS One, 5, e9637.
- “hsa-miR-3928-3p” is known as “hsa-mir-3928” (miRBase Accession No. MI0016438, SEQ ID NO: 303) having a hairpin-like structure as a precursor.
- hsa-miR-1227-5p gene or “hsa-miR-1227-5p” refers to the hsa-miR-1227-5p gene described in SEQ ID NO: 118 (miRBase Accession No. MIMAT0022941) and other species homologues or orthologues are included.
- the hsa-miR-1227-5p gene can be obtained by the method described in Berezikov E et al., 2007, Mol Cell, 28, p328-336.
- “hsa-miR-1227-5p” is known as “hsa-mir-1227” (miRBase Accession No. MI0006316, SEQ ID NO: 304) having a hairpin-like structure as a precursor.
- hsa-miR-4492 gene or “hsa-miR-4492” refers to the hsa-miR-4492 gene (miRBase Accession No. MIMAT0019027) described in SEQ ID NO: 119 or other biological species. Homologs or orthologs are included.
- the hsa-miR-4492 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- “hsa-miR-4492” is known as “hsa-mir-4492” (miRBase Accession No. MI0016854, SEQ ID NO: 305) having a hairpin-like structure as a precursor.
- hsa-miR-296-3p gene or “hsa-miR-296-3p” refers to the hsa-miR-296-3p gene described in SEQ ID NO: 120 (miRBase Accession No. MIMAT0004679) and other species homologs or orthologs.
- the hsa-miR-296-3p gene can be obtained by the method described in Houbavy HB et al., 2003, Dev Cell, Vol. 5, p351-358.
- “hsa-miR-296-3p” is known as “hsa-mir-296” (miRBase Accession No. MI000047, SEQ ID NO: 306) having a hairpin-like structure as a precursor.
- hsa-miR-6769a-5p gene or “hsa-miR-6769a-5p” refers to the hsa-miR-6769a-5p gene described in SEQ ID NO: 121 (miRBase Accession No. MIMAT0027438) and other species homologs or orthologs.
- the hsa-miR-6769a-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6769a-5p “hsa-mir-6769a” (miRBase Accession No. MI0022614, SEQ ID NO: 307) having a hairpin-like structure as a precursor is known.
- hsa-miR-6889-5p gene or “hsa-miR-6889-5p” refers to the hsa-miR-6889-5p gene described in SEQ ID NO: 122 (miRBase Accession No. MIMAT0027678) and other species homologs or orthologs.
- the hsa-miR-6889-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6889-5p” is known as “hsa-mir-6889” (miRBase Accession No. MI0022736, SEQ ID NO: 308) having a hairpin-like structure as a precursor.
- hsa-miR-4632-5p gene or “hsa-miR-4632-5p” refers to the hsa-miR-4632-5p gene described in SEQ ID NO: 123 (miRBase Accession No. MIMAT0022977) and other species homologs or orthologs.
- the hsa-miR-4632-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4632-5p” is known as “hsa-mir-4632” (miRBase Accession No. MI0017259, SEQ ID NO: 309) having a hairpin-like structure as a precursor.
- hsa-miR-4505 gene or “hsa-miR-4505” refers to the hsa-miR-4505 gene (miRBase Accession No. MIMAT0019041) described in SEQ ID NO: 124 or other biological species. Homologs or orthologs are included.
- the hsa-miR-4505 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-miR-4505 “hsa-mir-4505” (miRBase Accession No. MI0016868, SEQ ID NO: 310) having a hairpin-like structure as a precursor is known.
- hsa-miR-3154 gene or “hsa-miR-3154” refers to the hsa-miR-3154 gene (miRBase Accession No. MIMAT0015028) described in SEQ ID NO: 125 or other biological species. Homologs or orthologs are included.
- the hsa-miR-3154 gene can be obtained by the method described in Berezikov E et al., 2006, Genome Res, 16, p1299-1298.
- hsa-miR-3154 “hsa-mir-3154” (miRBase Accession No. MI0014182, SEQ ID NO: 311) having a hairpin-like structure as a precursor is known.
- hsa-miR-3648 gene or “hsa-miR-3648” refers to the hsa-miR-3648 gene (miRBase Accession No. MIMAT0018068) described in SEQ ID NO: 126 and other biological species. Homologs or orthologs are included.
- the hsa-miR-3648 gene can be obtained by the method described in Meiri E et al., 2010, Nucleic Acids Res, 38, p6234-6246.
- hsa-miR-3648 “hsa-mir-3648” (miRBase Accession No. MI0016048, SEQ ID NO: 312) having a hairpin-like structure as a precursor is known.
- hsa-miR-4442 gene or “hsa-miR-4442” refers to the hsa-miR-4442 gene (miRBase Accession No. MIMAT0018960) described in SEQ ID NO: 127 and other biological species. Homologs or orthologs are included.
- the hsa-miR-4442 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-miR-4442 is known as “hsa-mir-4442” (miRBase Accession No. MI0016785, SEQ ID NO: 313) having a hairpin-like structure as a precursor.
- hsa-miR-3141 gene or “hsa-miR-3141” refers to the hsa-miR-3141 gene (miRBase Accession No. MIMAT0015010) described in SEQ ID NO: 128 or other biological species. Homologs or orthologs are included.
- the hsa-miR-3141 gene can be obtained by the method described in Stark MS et al., 2010, PLoS One, 5, e9685.
- hsa-miR-3141 “hsa-mir-3141” (miRBase Accession No. MI0014165, SEQ ID NO: 314) having a hairpin-like structure as a precursor is known.
- hsa-miR-7113-3p gene or “hsa-miR-7113-3p” refers to the hsa-miR-7113-3p gene described in SEQ ID NO: 129 (miRBase Accession No. MIMAT0028124) and other species homologues or orthologues are included.
- the hsa-miR-7113-3p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-7113-3p “hsa-mir-7113” (miRBase Accession No. MI0022964, SEQ ID NO: 315) having a hairpin-like structure as a precursor is known.
- hsa-miR-6819-5p gene or “hsa-miR-6819-5p” refers to the hsa-miR-6819-5p gene described in SEQ ID NO: 130 (miRBase Accession No. MIMAT0027538) and other species homologues or orthologues are included.
- the hsa-miR-6819-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6819-5p” is known as “hsa-mir-6819” (miRBase Accession No. MI0022664, SEQ ID NO: 316) having a hairpin-like structure as a precursor.
- hsa-miR-3195 gene or “hsa-miR-3195” refers to the hsa-miR-3195 gene (miRBase Accession No. MIMAT0015079) described in SEQ ID NO: 131 or other biological species. Homologs or orthologs are included.
- the hsa-miR-3195 gene can be obtained by the method described in Stark MS et al., 2010, PLoS One, 5, e9685.
- hsa-miR-3195 “hsa-mir-3195” (miRBase Accession No. MI0014240, SEQ ID NO: 317) having a hairpin-like structure as a precursor is known.
- hsa-miR-1199-5p gene or “hsa-miR-1199-5p” refers to the hsa-miR-1199-5p gene described in SEQ ID NO: 132 (miRBase Accession No. MIMAT0031119) and other species homologues or orthologues are included.
- the hsa-miR-1199-5p gene can be obtained by the method described in Salvi A et al., 2013, Int J Oncol, 42, p391-402.
- hsa-miR-1199-5p “hsa-mir-1199” (miRBase Accession No. MI0020340, SEQ ID NO: 318) having a hairpin-like structure as a precursor is known.
- hsa-miR-6738-5p gene or “hsa-miR-6738-5p” refers to the hsa-miR-6738-5p gene described in SEQ ID NO: 133 (miRBase Accession No. MIMAT0027377) and other species homologues or orthologues are included.
- the hsa-miR-6738-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6738-5p” is known as “hsa-mir-6738” (miRBase Accession No. MI0022583, SEQ ID NO: 319) having a hairpin-like structure as a precursor.
- hsa-miR-4656 gene or “hsa-miR-4656” refers to the hsa-miR-4656 gene (miRBase Accession No. MIMAT0019723) described in SEQ ID NO: 134 or other biological species. Homologs or orthologs are included.
- the hsa-miR-4656 gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- hsa-miR-4656 “hsa-mir-4656” (miRBase Accession No. MI0017284, SEQ ID NO: 320), which has a hairpin-like structure as a precursor, is known.
- hsa-miR-6820-5p gene or “hsa-miR-6820-5p” refers to the hsa-miR-6820-5p gene described in SEQ ID NO: 135 (miRBase Accession No. MIMAT0027540) and other species homologs or orthologs.
- the hsa-miR-6820-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6820-5p” is known as “hsa-mir-6820” (miRBase Accession No. MI0022665, SEQ ID NO: 321) having a hairpin-like structure as a precursor.
- hsa-miR-615-5p gene or “hsa-miR-615-5p” refers to the hsa-miR-615-5p gene described in SEQ ID NO: 136 (miRBase Accession No. MIMAT0004804) and other species homologues or orthologues are included.
- the hsa-miR-615-5p gene can be obtained by the method described in Cummins JM et al., 2006, Proc Natl Acad Sci USA, 103, p3687-3692.
- “hsa-miR-615-5p” is known as “hsa-mir-615” (miRBase Accession No. MI0003628, SEQ ID NO: 322) having a hairpin-like structure as a precursor.
- hsa-miR-486-3p gene or “hsa-miR-486-3p” refers to the hsa-miR-486-3p gene described in SEQ ID NO: 137 (miRBase Accession No. MIMAT0004762) and other species homologs or orthologs are included.
- the hsa-miR-486-3p gene can be obtained by the method described in Fu H et al., 2005, FEBS Lett, 579, p3849-3854.
- “Hsa-miR-486-3p” has a hairpin-like structure as a precursor thereof, “hsa-mir-486, hsa-mir-486-2” (miRBase Accession No. MI0002470, MI0023622, SEQ ID NO: 323, 324) is known.
- hsa-miR-1225-3p gene or “hsa-miR-1225-3p” refers to the hsa-miR-1225-3p gene described in SEQ ID NO: 138 (miRBase Accession No. MIMAT0005573) and other species homologues or orthologues are included.
- the hsa-miR-1225-3p gene can be obtained by the method described in Berezikov E et al., 2007, Mol Cell, 28, p328-336.
- “hsa-miR-1225-3p” is known as “hsa-mir-1225” (miRBase Accession No. MI0006311, SEQ ID NO: 325) having a hairpin-like structure as a precursor.
- hsa-miR-760 gene or “hsa-miR-760” refers to the hsa-miR-760 gene (miRBase Accession No. MIMAT0004957) described in SEQ ID NO: 139 or other biological species. Homologs or orthologs are included.
- the hsa-miR-760 gene can be obtained by the method described in Berezikov E et al., 2006, Genome Res, 16, p1299-1298.
- hsa-miR-760 “hsa-mir-760” (miRBase Accession No. MI0005567, SEQ ID NO: 326) having a hairpin-like structure as a precursor is known.
- hsa-miR-187-5p gene or “hsa-miR-187-5p” refers to the hsa-miR-187-5p gene described in SEQ ID NO: 140 (miRBase Accession No. MIMAT0004561) and other species homologs or orthologs are included.
- the hsa-miR-187-5p gene can be obtained by the method described in Lim LP et al., 2003, Science, 299, p1540.
- hsa-miR-187-5p “hsa-mir-187” (miRBase Accession No. MI000000274, SEQ ID NO: 327) having a hairpin-like structure as a precursor is known.
- hsa-miR-1203 gene or “hsa-miR-1203” refers to the hsa-miR-1203 gene (miRBase Accession No. MIMAT0005866) described in SEQ ID NO: 141 or other species. Homologs or orthologs are included.
- the hsa-miR-1203 gene can be obtained by the method described in Marton S, et al., 2008, Leukemia, Vol. 22, p330-338.
- “hsa-miR-1203” is known as “hsa-mir-1203” (miRBase Accession No. MI0006335, SEQ ID NO: 328) having a hairpin-like structure as a precursor.
- hsa-miR-7110-5p gene or “hsa-miR-7110-5p” refers to the hsa-miR-7110-5p gene described in SEQ ID NO: 142 (miRBase Accession No. MIMAT0028117) and other species homologues or orthologues are included.
- the hsa-miR-7110-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-7110-5p “hsa-mir-7110” (miRBase Accession No. MI0022961, SEQ ID NO: 329) having a hairpin-like structure as a precursor is known.
- hsa-miR-371a-5p gene or “hsa-miR-371a-5p” refers to the hsa-miR-371a-5p gene described in SEQ ID NO: 143 (miRBase Accession No. MIMAT0004687) and other species homologues or orthologues are included.
- the hsa-miR-371a-5p gene can be obtained by the method described in Suh MR et al., 2004, Dev Biol, 270, p488-498.
- “hsa-miR-371a-5p” is known as “hsa-mir-371a” (miRBase Accession No. MI000079, SEQ ID NO: 330) having a hairpin-like structure as a precursor.
- hsa-miR-939-5p gene or “hsa-miR-939-5p” refers to the hsa-miR-939-5p gene described in SEQ ID NO: 144 (miRBase Accession No. MIMAT0004982) and other species homologues or orthologues are included.
- the hsa-miR-939-5p gene can be obtained by the method described in Lui WO et al., 2007, Cancer Res, Vol. 67, p6031-6043.
- “hsa-miR-939-5p” is known as “hsa-mir-939” (miRBase Accession No. MI0005761, SEQ ID NO: 331) having a hairpin-like structure as a precursor.
- hsa-miR-575 gene or “hsa-miR-575” refers to the hsa-miR-575 gene (miRBase Accession No. MIMAT0003240) described in SEQ ID NO: 145 or other biological species. Homologs or orthologs are included.
- the hsa-miR-575 gene can be obtained by the method described in Cummins JM et al., 2006, Proc Natl Acad Sci USA, Vol. 103, p3687-3692.
- hsa-miR-575 “hsa-mir-575” (miRBase Accession No. MI0003582, SEQ ID NO: 332) having a hairpin-like structure as a precursor is known.
- hsa-miR-92b-5p gene or “hsa-miR-92b-5p” refers to the hsa-miR-92b-5p gene described in SEQ ID NO: 146 (miRBase Accession No. MIMAT0004792) and other species homologs or orthologs are included.
- the hsa-miR-92b-5p gene can be obtained by the method described in Cummins JM et al., 2006, Proc Natl Acad Sci USA, 103, p3687-3692.
- hsa-miR-92b-5p “hsa-mir-92b” (miRBase Accession No. MI0003560, SEQ ID NO: 333) having a hairpin-like structure as a precursor is known.
- hsa-miR-887-3p gene or “hsa-miR-887-3p” refers to the hsa-miR-887-3p gene described in SEQ ID NO: 147 (miRBase Accession No. MIMAT0004951) and other species homologs or orthologs.
- the hsa-miR-887-3p gene can be obtained by the method described in Berezikov E et al., 2006, Genome Res, 16: p1299-1298.
- hsa-miR-887-3p “hsa-mir-887” (miRBase Accession No. MI0005562, SEQ ID NO: 334) having a hairpin-like structure as a precursor is known.
- hsa-miR-920 gene or “hsa-miR-920” refers to the hsa-miR-920 gene (miRBase Accession No. MIMAT0004970) described in SEQ ID NO: 148 or other biological species. Homologs or orthologs are included.
- the hsa-miR-920 gene can be obtained by the method described in Novotny GW et al., 2007, Int J Androl, 30, p316-326.
- hsa-miR-920 “hsa-mir-920” (miRBase Accession No. MI0005712, SEQ ID NO: 335) having a hairpin-like structure as a precursor is known.
- hsa-miR-1915-5p gene or “hsa-miR-1915-5p” refers to the hsa-miR-1915-5p gene described in SEQ ID NO: 149 (miRBase Accession No. MIMAT0007891) and other species homologues or orthologues are included.
- the hsa-miR-1915-5p gene can be obtained by the method described in Bar M et al., 2008, Stem Cells, Vol. 26, p2496-2505.
- “hsa-miR-1915-5p” is known as “hsa-mir-1915” (miRBase Accession No. MI0008336, SEQ ID NO: 336) having a hairpin-like structure as a precursor.
- hsa-miR-1231 gene or “hsa-miR-1231” refers to the hsa-miR-1231 gene (miRBase Accession No. MIMAT0005586) described in SEQ ID NO: 150 or other biological species. Homologs or orthologs are included.
- the hsa-miR-1231 gene can be obtained by the method described in Berezikov E et al., 2007, Mol Cell, 28, p328-336.
- hsa-miR-1231 “hsa-mir-1231” (miRBase Accession No. MI0006321, SEQ ID NO: 337) having a hairpin-like structure as a precursor is known.
- hsa-miR-663b gene or “hsa-miR-663b” refers to the hsa-miR-663b gene (miRBase Accession No. MIMAT0005867) described in SEQ ID NO: 151 or other biological species. A homolog or ortholog is included.
- the hsa-miR-663b gene can be obtained by the method described in Takada S et al., 2008, Leukemia, Vol. 22, p1274-1278.
- hsa-miR-663b is known as “hsa-mir-663b” (miRBase Accession No. MI0006336, SEQ ID NO: 338) having a hairpin-like structure as a precursor.
- hsa-miR-1225-5p gene or “hsa-miR-1225-5p” refers to the hsa-miR-1225-5p gene (miRBase Accession No. MIMAT0005572) and other species homologues or orthologues are included.
- the hsa-miR-1225-5p gene can be obtained by the method described in Berezikov E et al., 2007, Mol Cell, 28, p328-336.
- hsa-mir-1225 (miRBase Accession No. MI0006311, SEQ ID NO: 325) having a hairpin-like structure as a precursor is known.
- hsa-miR-4763-3p gene or “hsa-miR-4763-3p” refer to the hsa-miR-4763-3p gene (miRBase Accession No. MIMAT0019913) and other species homologues or orthologues are included.
- the hsa-miR-4763-3p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4763-3p” is known as “hsa-mir-4763” (miRBase Accession No. MI0017404, SEQ ID NO: 339) having a hairpin-like structure as a precursor.
- hsa-miR-3656 gene or “hsa-miR-3656” refers to the hsa-miR-3656 gene (miRBase Accession No. MIMAT0018076) described in SEQ ID NO: 154 or other biological species. Homologs or orthologs are included.
- the hsa-miR-3656 gene can be obtained by the method described in Meiri E et al., 2010, Nucleic Acids Res, 38, p6234-6246.
- hsa-miR-3656 “hsa-mir-3656” (miRBase Accession No. MI0016056, SEQ ID NO: 340) having a hairpin-like structure as a precursor is known.
- hsa-miR-4488 gene or “hsa-miR-4488” refers to the hsa-miR-4488 gene (miRBase Accession No. MIMAT0019022) described in SEQ ID NO: 155 or other biological species. Homologs or orthologs are included.
- the hsa-miR-4488 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-miR-4488 “hsa-mir-4488” (miRBase Accession No. MI0016849, SEQ ID NO: 341) having a hairpin-like structure as a precursor is known.
- hsa-miR-125a-3p gene or “hsa-miR-125a-3p” refers to the hsa-miR-125a-3p gene described in SEQ ID NO: 156 (miRBase Accession No. MIMAT0004602) and other species homologues or orthologues are included.
- the hsa-miR-125a-3p gene can be obtained by the method described in Lagos-Quintana M et al., 2002, Curr Biol, Vol. 12, p735-739.
- “hsa-miR-125a-3p” is known as “hsa-mir-125a” (miRBase Accession No. MI000069, SEQ ID NO: 342) having a hairpin-like structure as a precursor.
- hsa-miR-1469 gene or “hsa-miR-1469” refers to the hsa-miR-1469 gene (miRBase Accession No. MIMAT0007347) described in SEQ ID NO: 157 or other biological species. Homologs or orthologs are included.
- the hsa-miR-1469 gene can be obtained by the method described in Kawaji H et al., 2008, BMC Genomics, Vol. 9, p157.
- hsa-miR-1469 “hsa-mir-1469” (miRBase Accession No. MI00000074, SEQ ID NO: 343) having a hairpin-like structure as a precursor is known.
- hsa-miR-1228-5p gene or “hsa-miR-1228-5p” refers to the hsa-miR-1228-5p gene (miRBase Accession No. MIMAT0005582) and other species homologues or orthologues are included.
- the hsa-miR-1228-5p gene can be obtained by the method described in Berezikov E et al., 2007, Mol Cell, 28, p328-336.
- “hsa-miR-1228-5p” is known as “hsa-mir-1228” (miRBase Accession No. MI0006318, SEQ ID NO: 344) having a hairpin-like structure as a precursor.
- hsa-miR-6798-5p gene or “hsa-miR-6798-5p” refers to the hsa-miR-6798-5p gene described in SEQ ID NO: 159 (miRBase Accession No. MIMAT0027496) and other species homologs or orthologs.
- the hsa-miR-6798-5p gene can be obtained by the method described in Ladwig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6798-5p “hsa-mir-6798” (miRBase Accession No. MI0022643, SEQ ID NO: 345) having a hairpin-like structure as a precursor is known.
- hsa-miR-1268b gene or “hsa-miR-1268b” refers to the hsa-miR-1268b gene (miRBase Accession No. MIMAT0018925) described in SEQ ID NO: 160 and other biological species. Homologs or orthologs are included.
- the hsa-miR-1268b gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-miR-1268b is known as “hsa-mir-1268b” (miRBase Accession No. MI0016748, SEQ ID NO: 346) having a hairpin-like structure as a precursor.
- hsa-miR-6732-5p gene or “hsa-miR-6732-5p” refers to the hsa-miR-6732-5p gene described in SEQ ID NO: 161 (miRBase Accession No. MIMAT0027365) and other species homologs or orthologs.
- the hsa-miR-6732-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6732-5p “hsa-mir-6732” (miRBase Accession No. MI0022577, SEQ ID NO: 347) having a hairpin-like structure as a precursor is known.
- hsa-miR-1915-3p gene or “hsa-miR-1915-3p” refers to the hsa-miR-1915-3p gene described in SEQ ID NO: 162 (miRBase Accession No. MIMAT0007892) and other species homologues or orthologues are included.
- the hsa-miR-1915-3p gene can be obtained by the method described in Bar M et al., 2008, Stem Cells, Vol. 26, p2496-2505.
- “hsa-miR-1915-3p” is known as “hsa-mir-1915” (miRBase Accession No. MI0008336, SEQ ID NO: 336) having a hairpin-like structure as a precursor.
- hsa-miR-4433b-3p gene or “hsa-miR-4433b-3p” refers to the hsa-miR-4433b-3p gene described in SEQ ID NO: 163 (miRBase Accession No. MIMAT0030414) and other species homologues or orthologues are included.
- the hsa-miR-4433b-3p gene can be obtained by the method described in Ple H et al., 2012, PLoS One, Vol. 7, e50746.
- “hsa-miR-4433b-3p” is known as “hsa-mir-4433b” (miRBase Accession No. MI0025511, SEQ ID NO: 348) having a hairpin-like structure as a precursor.
- hsa-miR-1207-5p gene or “hsa-miR-1207-5p” refers to the hsa-miR-1207-5p gene described in SEQ ID NO: 164 (miRBase Accession No. MIMAT0005871) and other species homologs or orthologs are included.
- the hsa-miR-1207-5p gene can be obtained by the method described in Huppi K et al., 2008, Mol Cancer Res, Vol. 6, p212-221.
- hsa-miR-1207-5p “hsa-mir-1207” (miRBase Accession No. MI0006340, SEQ ID NO: 349) having a hairpin-like structure as a precursor is known.
- hsa-miR-4433-3p gene or “hsa-miR-4433-3p” refers to the hsa-miR-4433-3p gene described in SEQ ID NO: 165 (miRBase Accession No. MIMAT0018949) and other species homologs or orthologs.
- the hsa-miR-4433-3p gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- “hsa-miR-4433-3p” is known as “hsa-mir-4433” (miRBase Accession No. MI0016773, SEQ ID NO: 350) having a hairpin-like structure as a precursor.
- hsa-miR-6879-5p gene or “hsa-miR-6879-5p” refers to the hsa-miR-6879-5p gene described in SEQ ID NO: 166 (miRBase Accession No. MIMAT0027658) and other species homologs or orthologs.
- the hsa-miR-6879-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6879-5p “hsa-mir-6879” (miRBase Accession No. MI0022726, SEQ ID NO: 351) having a hairpin-like structure as a precursor is known.
- hsa-miR-4417 gene or “hsa-miR-4417” refers to the hsa-miR-4417 gene (miRBase Accession No. MIMAT0018929) described in SEQ ID NO: 167 or other biological species. Homologs or orthologs are included.
- the hsa-miR-4417 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-miR-4417 “hsa-mir-4417” (miRBase Accession No. MI0016753, SEQ ID NO: 352) having a hairpin-like structure as a precursor is known.
- hsa-miR-30c-1-3p gene or “hsa-miR-30c-1-3p” refers to the hsa-miR-30c-1-3p described in SEQ ID NO: 168. Genes (miRBBase Accession No. MIMAT0004674) and other species homologues or orthologues are included.
- the hsa-miR-30c-1-3p gene can be obtained by the method described in Lagos-Quintana M et al., 2002, Curr Biol, Vol. 12, p735-739.
- hsa-miR-30c-1-3p “hsa-mir-30c-1” (miRBase Accession No. MI000036, SEQ ID NO: 353) having a hairpin-like structure as a precursor is known.
- hsa-miR-4638-5p gene or “hsa-miR-4638-5p” refers to the hsa-miR-4638-5p gene (miRBase Accession No. MIMAT0019695) and other species homologs or orthologs.
- the hsa-miR-4638-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4638-5p” is known as “hsa-mir-4638” (miRBase Accession No. MI0017265, SEQ ID NO: 354) having a hairpin-like structure as a precursor.
- hsa-miR-6088 gene or “hsa-miR-6088” refers to the hsa-miR-6088 gene (miRBase Accession No. MIMAT0023713) described in SEQ ID NO: 170 and other species. Homologs or orthologs are included.
- the hsa-miR-6088 gene can be obtained by the method described in Yoo JK et al., 2012, Stem Cells Dev, 21, p2049-2057.
- hsa-miR-6088 “hsa-mir-6088” (miRBase Accession No. MI0020365, SEQ ID NO: 355) having a hairpin-like structure as a precursor is known.
- hsa-miR-4270 gene or “hsa-miR-4270” refers to the hsa-miR-4270 gene (miRBase Accession No. MIMAT0016900) described in SEQ ID NO: 171 and other biological species. Homologs or orthologs are included.
- the hsa-miR-4270 gene can be obtained by the method described in Goff LA et al., 2009, PLoS One, Vol. 4, e7192.
- hsa-miR-4270 “hsa-mir-4270” (miRBase Accession No. MI0015878, SEQ ID NO: 356) having a hairpin-like structure as a precursor is known.
- hsa-miR-6782-5p gene or “hsa-miR-6782-5p” refers to the hsa-miR-6782-5p gene described in SEQ ID NO: 172 (miRBase Accession No. MIMAT0027464) and other species homologues or orthologues are included.
- the hsa-miR-6782-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6782-5p” is known as “hsa-mir-6782” (miRBase Accession No. MI0022627, SEQ ID NO: 357), which has a hairpin-like structure as a precursor.
- hsa-miR-665 gene or “hsa-miR-665” refers to the hsa-miR-665 gene (miRBase Accession No. MIMAT0004952) described in SEQ ID NO: 173 and other biological species. Homologs or orthologs are included.
- the hsa-miR-665 gene can be obtained by the method described in Berezikov E et al., 2006, Genome Res, 16, p1299-1298.
- “Hsa-miR-665” is known as “hsa-mir-665” (miRBase Accession No. MI0005563, SEQ ID NO: 358) having a hairpin-like structure as a precursor.
- hsa-miR-486-5p gene or “hsa-miR-486-5p” refers to the hsa-miR-486-5p gene described in SEQ ID NO: 174 (miRBase Accession No. MIMAT0002177) and other species homologues or orthologues are included.
- the hsa-miR-486-5p gene can be obtained by the method described in Fu H et al., 2005, FEBS Lett, 579, p3849-3854.
- “Hsa-miR-486-5p” has a hairpin-like structure as its precursor, “hsa-mir-486, hsa-mir-486-2” (miRBase Accession No. MI0002470, MI0023622, SEQ ID NO: 323, 324) is known.
- hsa-miR-4655-5p gene or “hsa-miR-4655-5p” refers to the hsa-miR-4655-5p gene described in SEQ ID NO: 175 (miRBase Accession No. MIMAT0019721) and other species homologues or orthologues are included.
- the hsa-miR-4655-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4655-5p” “hsa-mir-4655” (miRBase Accession No. MI0017283, SEQ ID NO: 359) having a hairpin-like structure as a precursor is known.
- hsa-miR-1275 gene or “hsa-miR-1275” refers to the hsa-miR-1275 gene (miRBase Accession No. MIMAT0005929) described in SEQ ID NO: 176 or other biological species. Homologs or orthologs are included.
- the hsa-miR-1275 gene can be obtained by the method described in Morin RD et al., 2008, Genome Res, 18, p610-621.
- “Hsa-miR-1275” is known as “hsa-mir-1275” (miRBase Accession No. MI0006415, SEQ ID NO: 360) having a hairpin-like structure as a precursor.
- hsa-miR-6806-5p gene or “hsa-miR-6806-5p” refers to the hsa-miR-6806-5p gene described in SEQ ID NO: 177 (miRBase Accession No. 1). MIMAT0027512) and other species homologues or orthologues are included.
- the hsa-miR-6806-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6806-5p” is known as “hsa-mir-6806” (miRBase Accession No. MI0022651, SEQ ID NO: 361) having a hairpin-like structure as a precursor.
- hsa-miR-614 gene or “hsa-miR-614” refers to the hsa-miR-614 gene (miRBase Accession No. MIMAT0003282) described in SEQ ID NO: 178 or other biological species. Homologs or orthologs are included.
- the hsa-miR-614 gene can be obtained by the method described in Cummins JM et al., 2006, Proc Natl Acad Sci US A, 103, p3687-3692.
- hsa-miR-614 “hsa-mir-614” (miRBase Accession No. MI0003627, SEQ ID NO: 362) having a hairpin-like structure as a precursor is known.
- hsa-miR-3937 gene or “hsa-miR-3937” refers to the hsa-miR-3937 gene (miRBase Accession No. MIMAT0018352) described in SEQ ID NO: 179 or other biological species. Homologs or orthologs are included.
- the hsa-miR-3937 gene can be obtained by the method described in Liao JY et al., 2010, PLoS One, 5, e10563.
- hsa-miR-3937 “hsa-mir-3937” (miRBase Accession No. MI0016593, SEQ ID NO: 363) having a hairpin-like structure as a precursor is known.
- hsa-miR-6752-5p gene or “hsa-miR-6752-5p” refers to the hsa-miR-6752-5p gene described in SEQ ID NO: 180 (miRBase Accession No. MIMAT0027404) and other species homologs or orthologs.
- the hsa-miR-6675-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6752-5p” is known as “hsa-mir-6752” (miRBase Accession No. MI0022597, SEQ ID NO: 364) having a hairpin-like structure as a precursor.
- hsa-miR-6771-5p gene or “hsa-miR-6771-5p” refers to the hsa-miR-6711-5p gene (miRBase Accession No. MIMAT0027442) and other species homologues or orthologues are included.
- the hsa-miR-6671-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6711-5p” is known as “hsa-mir-6711” (miRBase Accession No. MI0022616, SEQ ID NO: 365) having a hairpin-like structure as a precursor.
- hsa-miR-4450 gene or “hsa-miR-4450” refers to the hsa-miR-4450 gene (miRBase Accession No. MIMAT0018971) described in SEQ ID NO: 182 or other species. Homologs or orthologs are included.
- the hsa-miR-4450 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-mir-4450 (miRBase Accession No. MI0016795, SEQ ID NO: 366) having a hairpin-like structure as a precursor is known.
- hsa-miR-211-3p gene or “hsa-miR-211-3p” refers to the hsa-miR-211-3p gene described in SEQ ID NO: 183 (miRBase Accession No. MIMAT0022694) and other species homologues or orthologues are included.
- the hsa-miR-211-3p gene can be obtained by the method described in Lim LP et al., 2003, Science, 299, p1540.
- “hsa-miR-211-3p” is known as “hsa-mir-211” (miRBase Accession No. MI0000287, SEQ ID NO: 367) having a hairpin-like structure as a precursor.
- hsa-miR-663a gene or “hsa-miR-663a” refers to the hsa-miR-663a gene (miRBase Accession No. MIMAT0003326) described in SEQ ID NO: 184 or other biological species. Homologs or orthologs are included.
- the hsa-miR-663a gene can be obtained by the method described in Cummins JM et al., 2006, Proc Natl Acad Sci USA, Vol. 103, p3687-3692.
- “hsa-miR-663a” is known as “hsa-mir-663a” (miRBase Accession No. MI0003672, SEQ ID NO: 368), which has a hairpin-like structure as a precursor.
- hsa-miR-6842-5p gene or “hsa-miR-6842-5p” refers to the hsa-miR-6842-5p gene described in SEQ ID NO: 185 (miRBase Accession No. MIMAT0027586) and other species homologues or orthologues are included.
- the hsa-miR-6842-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6842-5p “hsa-mir-6842” (miRBase Accession No. MI0022688, SEQ ID NO: 369) having a hairpin-like structure as a precursor is known.
- hsa-miR-7114-5p gene or “hsa-miR-7114-5p” refers to the hsa-miR-7114-5p gene described in SEQ ID NO: 186 (miRBase Accession No. MIMAT0028125) and other species homologs or orthologs.
- the hsa-miR-7114-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-7114-5p” is known as “hsa-mir-7114” (miRBase Accession No. MI0022965, SEQ ID NO: 370) having a hairpin-like structure as a precursor.
- hsa-miR-6679-5p gene or “hsa-miR-6679-5p” refers to the hsa-miR-6679-5p gene described in SEQ ID NO: 187 (miRBase Accession No. MIMAT0027458) and other species homologues or orthologues are included.
- the hsa-miR-6679-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6779-5p” is known as “hsa-mir-6679” (miRBase Accession No. MI0022624, SEQ ID NO: 371) having a hairpin-like structure as a precursor.
- hsa-miR-204-3p gene or “hsa-miR-204-3p” refers to the hsa-miR-204-3p gene described in SEQ ID NO: 580 (miRBase Accession No. MIMAT0022693) and other species homologues or orthologues are included.
- the hsa-miR-204-3p gene is described in Lim LP et al., 2003, Science. 299, p1540.
- “Hsa-miR-204-3p” is known as “hsa-mir-204” (miRBase Accession No. MI00000028, SEQ ID NO: 612) having a hairpin-like structure as a precursor.
- hsa-miR-642a-3p gene or “hsa-miR-642a-3p” refers to the hsa-miR-642a-3p gene described in SEQ ID NO: 581 (miRBase Accession No. MIMAT0020924) and other species homologs or orthologs.
- the hsa-miR-642a-3p gene can be obtained by the method described in Cummins JM et al., 2006, Proc Natl Acad Sci USA, 103, p3687-3692.
- “hsa-miR-642a-3p” is known as “hsa-mir-642a” (miRBase Accession No. MI0003657, SEQ ID NO: 613) having a hairpin-like structure as a precursor.
- hsa-miR-762 gene or “hsa-miR-762” refers to the hsa-miR-762 gene (miRBase Accession No. MIMAT0010313) described in SEQ ID NO: 582 or other biological species. Homologs or orthologs are included.
- the hsa-miR-762 gene can be obtained by the method described in Berezikov E et al., 2006, Genome Res, 16, p1299-1298.
- hsa-miR-762 is known as “hsa-mir-762” (miRBase Accession No. MI0003892, SEQ ID NO: 614) having a hairpin-like structure as a precursor.
- hsa-miR-1202 gene or “hsa-miR-1202” refers to the hsa-miR- 1202 gene (miRBase Accession No. MIMAT0005865) described in SEQ ID NO: 583 or other species. Homologs or orthologs are included.
- the hsa-miR- 1202 gene is described in Martin S et al., 2008, Leukemia. , Vol. 22, p330-338.
- “hsa-miR-1202” is known as “hsa-mir-1220” (miRBase Accession No. MI0006334, SEQ ID NO: 615) having a hairpin-like structure as a precursor.
- hsa-miR-3162-5p gene or “hsa-miR-3162-5p” refers to the hsa-miR-3162-5p gene (miRBase Accession No. 5) described in SEQ ID NO: 584. MIMAT0015036) and other species homologs or orthologs.
- the hsa-miR-3162-5p gene was obtained from Stark MS et al., 2010, PLoS One. No. 5, vol. E9685.
- “hsa-miR-3162-5p” “hsa-mir-3162” (miRBase Accession No. MI0014192, SEQ ID NO: 616) having a hairpin-like structure as a precursor is known.
- hsa-miR-3196 gene or “hsa-miR-3196” refers to the hsa-miR-3196 gene (miRBase Accession No. MIMAT0015080) described in SEQ ID NO: 585 or other biological species. Homologs or orthologs are included.
- the hsa-miR-3196 gene can be obtained by the method described in Stark MS et al., 2010, PLoS One, 5, e9685.
- “Hsa-miR-3196” is known as “hsa-mir-3196” (miRBase Accession No. MI0014241, SEQ ID NO: 617) having a hairpin-like structure as a precursor.
- hsa-miR-3622a-5p gene or “hsa-miR-3622a-5p” refers to the hsa-miR-3622a-5p gene described in SEQ ID NO: 586 (miRBase Accession No. MIMAT0018003) and other species homologs or orthologs.
- the hsa-miR-3622a-5p gene was obtained from Witten D et al., 2010, BMC Biol. , Volume 8, p58.
- “hsa-miR-3622a-5p” “hsa-mir-3622a” (miRBase Accession No. MI0016013, SEQ ID NO: 618) having a hairpin-like structure as a precursor is known.
- hsa-miR-3665 gene or “hsa-miR-3665” refers to the hsa-miR-3665 gene (miRBase Accession No. MIMAT0018087) described in SEQ ID NO: 587 and other biological species. Homologs or orthologs are included.
- the hsa-miR-3665 gene can be obtained by the method described in Xie X et al., 2005, Nature, 434, p338-345.
- “hsa-miR-3665” is known as “hsa-mir-3665” (miRBase Accession No. MI0016066, SEQ ID NO: 619) having a hairpin-like structure as a precursor.
- hsa-miR-3940-5p gene or “hsa-miR-3940-5p” refers to the hsa-miR-3940-5p gene described in SEQ ID NO: 588 (miRBase Accession No. MIMAT0019229) and other species homologues or orthologues are included.
- the hsa-miR-3940-5p gene can be obtained by the method described in Liao JY et al., 2010, PLoS One, 5, e10563.
- “hsa-miR-3940-5p” is known as “hsa-mir-3940” (miRBase Accession No. MI0016597, SEQ ID NO: 620) having a hairpin-like structure as a precursor.
- hsa-miR-4294 gene or “hsa-miR-4294” refers to the hsa-miR-4294 gene (miRBase Accession No. MIMAT0016849) described in SEQ ID NO: 589 and other biological species. Homologs or orthologs are included. The hsa-miR-4294 gene was found in Goff LA et al., 2009, PLoS One. 4, Volume 4, e7192. As for “hsa-miR-4294”, “hsa-mir-4294” (miRBase Accession No. MI0015827, SEQ ID NO: 621) having a hairpin-like structure as a precursor is known.
- hsa-miR-4466 gene or “hsa-miR-4466” refers to the hsa-miR-4466 gene (miRBase Accession No. MIMAT0018993) described in SEQ ID NO: 590 or other biological species. Homologs or orthologs are included.
- the hsa-miR-4466 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-mir-4466 (miRBase Accession No. MI0016817, SEQ ID NO: 622) having a hairpin-like structure as a precursor is known.
- hsa-miR-4476 gene or “hsa-miR-4476” refers to the hsa-miR-4476 gene (miRBase Accession No. MIMAT0019003) described in SEQ ID NO: 591 or other biological species. Homologs or orthologs are included.
- the hsa-miR-4476 gene is disclosed in Jim DD et al., 2010, Blood. 116, e118-e127.
- hsa-miR-4476 is known as “hsa-mir-4476” (miRBase Accession No. MI0016828, SEQ ID NO: 623) having a hairpin-like structure as a precursor.
- hsa-miR-4723-5p gene or “hsa-miR-4723-5p” refers to the hsa-miR-4723-5p gene (miRBase Accession No. 5) described in SEQ ID NO: 592. MIMAT0019838) and other species homologs or orthologs.
- the hsa-miR-4723-5p gene is disclosed in Persson H et al., 2011, Cancer Res. 71, p. 78-86.
- “hsa-miR-4723-5p” is known as “hsa-mir-4723” (miRBase Accession No. MI0017359, SEQ ID NO: 624) having a hairpin-like structure as a precursor.
- hsa-miR-4725-3p gene or “hsa-miR-4725-3p” refers to the hsa-miR-4725-3p gene described in SEQ ID NO: 593 (miRBase Accession No. MIMAT0019844) and other species homologs or orthologs.
- the hsa-miR-4725-3p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4725-3p” is known as “hsa-mir-4725” (miRBase Accession No. MI0017362, SEQ ID NO: 625) having a hairpin-like structure as a precursor.
- hsa-miR-4730 gene or “hsa-miR-4730” refers to the hsa-miR-4730 gene (miRBase Accession No. MIMAT0019852) described in SEQ ID NO: 594 or other biological species. Homologs or orthologs are included.
- the hsa-miR-4730 gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- hsa-miR-4730 “hsa-mir-4730” (miRBase Accession No. MI0017367, SEQ ID NO: 626) having a hairpin-like structure as a precursor is known.
- hsa-miR-4739 gene or “hsa-miR-4739” refers to the hsa-miR-4739 gene (miRBase Accession No. MIMAT0019868) described in SEQ ID NO: 595 or other biological species. Homologs or orthologs are included.
- the hsa-miR-4739 gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- hsa-miR-4739 “hsa-mir-4739” (miRBase Accession No. MI0017377, SEQ ID NO: 627) having a hairpin-like structure as a precursor is known.
- hsa-miR-4787-5p gene or “hsa-miR-4787-5p” refers to the hsa-miR-4787-5p gene described in SEQ ID NO: 596 (miRBase Accession No. MIMAT0019956) and other species homologues or orthologues are included.
- the hsa-miR-4787-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4787-5p” “hsa-mir-4787” (miRBase Accession No. MI0017434, SEQ ID NO: 628) having a hairpin-like structure as a precursor is known.
- hsa-miR-5787 gene or “hsa-miR-5787” refers to the hsa-miR-5787 gene (miRBase Accession No. MIMAT0023252) described in SEQ ID NO: 597 or other biological species. Homologs or orthologs are included.
- the hsa-miR-5787 gene can be obtained by the method described in Yoo H et al., 2011, Biochem Biophys Res Commun, 415, p567-572.
- “hsa-miR-5787” is known as “hsa-mir-5787” (miRBase Accession No. MI0019797, SEQ ID NO: 629), which has a hairpin-like structure as a precursor.
- hsa-miR-6085 gene or “hsa-miR-6085” refers to the hsa-miR-6085 gene (miRBase Accession No. MIMAT0023710) described in SEQ ID NO: 598 or other biological species. Homologs or orthologs are included. The hsa-miR-6085 gene was found in Voellenkle C et al., 2012, RNA. 18, p. 472-484. As for “hsa-miR-6085”, “hsa-mir-6085” (miRBase Accession No. MI0020362, SEQ ID NO: 630) having a hairpin-like structure as a precursor is known.
- hsa-miR-6717-5p gene or “hsa-miR-6717-5p” refers to the hsa-miR-6717-5p gene described in SEQ ID NO: 599 (miRBase Accession No. MIMAT00258446) and other species homologs or orthologs.
- the hsa-miR-6717-5p gene can be obtained by the method described in Li Y et al., 2012, Gene, 497, p330-335.
- “hsa-miR-6717-5p” is known as “hsa-mir-6717” (miRBase Accession No. MI0022551, SEQ ID NO: 631) having a hairpin-like structure as a precursor.
- hsa-miR-6724-5p gene or “hsa-miR-6724-5p” refers to the hsa-miR-6724-5p gene described in SEQ ID NO: 600 (miRBase Accession No. MIMAT0025856) and other species homologs or orthologs.
- the hsa-miR-6724-5p gene is disclosed in Li Y et al., 2012, Gene. 497, p330-335.
- “hsa-miR-6724-5p” is known as “hsa-mir-6724” (miRBase Accession No. MI0022559, SEQ ID NO: 632) having a hairpin-like structure as a precursor.
- hsa-miR-6777-5p gene or “hsa-miR-6777-5p” refers to the hsa-miR-6777-5p gene described in SEQ ID NO: 601 (miRBase Accession No. MIMAT0027454) and other species homologues or orthologues are included.
- the hsa-miR-6777-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6777-5p” is known as “hsa-mir-6777” (miRBase Accession No. MI0022622, SEQ ID NO: 633) having a hairpin-like structure as a precursor.
- hsa-miR-6778-5p gene or “hsa-miR-6778-5p” refers to the hsa-miR-6778-5p gene described in SEQ ID NO: 602 (miRBase Accession No. MIMAT0027456) and other species homologs or orthologs.
- the hsa-miR-6778-5p gene is disclosed in Ladewig E et al., 2012, Genome Res. , Vol. 22, p1634-645.
- hsa-miR-6778-5p “hsa-mir-6778” (miRBase Accession No. MI0022623, SEQ ID NO: 634) having a hairpin-like structure as a precursor is known.
- hsa-miR-6787-5p gene or “hsa-miR-6787-5p” refers to the hsa-miR-6787-5p gene described in SEQ ID NO: 603 (miRBase Accession No. MIMAT0027474) and other species homologues or orthologues are included.
- the hsa-miR-6787-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6787-5p “hsa-mir-6787” (miRBase Accession No. MI0022632, SEQ ID NO: 635) having a hairpin-like structure as a precursor is known.
- hsa-miR-6789-5p gene or “hsa-miR-6789-5p” refers to the hsa-miR-6789-5p gene described in SEQ ID NO: 604 (miRBase Accession No. MIMAT0027478) and other species homologs or orthologs.
- the hsa-miR-6789-5p gene is described in Ladewig E et al., 2012, Genome Res. , Vol. 22, p1634-645.
- hsa-miR-6789-5p “hsa-mir-6789” (miRBase Accession No. MI0022634, SEQ ID NO: 636) having a hairpin-like structure as a precursor is known.
- hsa-miR-6845-5p gene or “hsa-miR-6845-5p” refers to the hsa-miR-6845-5p gene described in SEQ ID NO: 605 (miRBase Accession No. MIMAT0027590) and other species homologues or orthologues are included.
- the hsa-miR-6845-5p gene is described in Ladewig E et al., 2012, Genome Res. , Vol. 22, p1634-645.
- hsa-miR-6845-5p “hsa-mir-6845” (miRBase Accession No. MI0022691, SEQ ID NO: 637) having a hairpin-like structure as a precursor is known.
- hsa-miR-6893-5p gene or “hsa-miR-6893-5p” refers to the hsa-miR-6893-5p gene described in SEQ ID NO: 606 (miRBase Accession No. MIMAT0027686) and other species homologues or orthologues are included.
- the hsa-miR-6893-5p gene is described in Ladewig E et al., 2012, Genome Res. , Vol. 22, p1634-645.
- hsa-miR-6893-5p “hsa-mir-6893” (miRBase Accession No. MI0022740, SEQ ID NO: 638) having a hairpin-like structure as a precursor is known.
- hsa-miR-16-5p gene or “hsa-miR-16-5p” refers to the hsa-miR-16-5p gene described in SEQ ID NO: 607 (miRBase Accession No. MIMAT0000069) and other species homologs or orthologs.
- the hsa-miR-16-5p gene was obtained from Lagos-Quintana M et al., 2002, Curr Biol. , Vol. 12, p735-739.
- “Hsa-miR-16-5p” has a hairpin-like structure as a precursor thereof, “hsa-mir-16-1, hsa-mir-16-2” (miRBase Accession No. MI00000070, MI0000115, SEQ ID NO: 639,640) are known.
- hsa-miR-423-5p gene or “hsa-miR-423-5p” refers to the hsa-miR-423-5p gene described in SEQ ID NO: 608 (miRBase Accession No. MIMAT0004748) and other species homologs or orthologs.
- the hsa-miR-423-5p gene was found in Kashima Shima et al., 2004, Biochem Biophys Res Commun. 322, p403-410.
- “Hsa-miR-423-5p” is known as “hsa-mir-423” (miRBase Accession No. MI0001445, SEQ ID NO: 641) having a hairpin-like structure as a precursor.
- hsa-miR-451a gene or “hsa-miR-451a” refers to the hsa-miR-451a gene (miRBase Accession No. MIMAT0001631) described in SEQ ID NO: 609 or other biological species. Homologs or orthologs are included.
- the hsa-miR-451a gene is described in Altuvia Y et al., 2005, Nucleic Acids Res. 33, p2697-2706.
- hsa-miR-451a “hsa-mir-451a” (miRBase Accession No. MI0001729, SEQ ID NO: 642) having a hairpin-like structure as a precursor is known.
- hsa-miR-564 gene or “hsa-miR-564” refers to the hsa-miR-564 gene (miRBase Accession No. MIMAT0003228) described in SEQ ID NO: 610 or other biological species. Homologs or orthologs are included.
- the hsa-miR-564 gene can be obtained by the method described in Cummins JM, 2006, Proc Natl Acad Sci, 103, p3687-3692.
- “hsa-miR-564” is known as “hsa-mir-564” (miRBase Accession No. MI0003570, SEQ ID NO: 643) having a hairpin-like structure as a precursor.
- hsa-miR-671-5p gene or “hsa-miR-671-5p” refers to the hsa-miR-671-5p gene described in SEQ ID NO: 611 (miRBase Accession No. MIMAT0003880) and other species homologs or orthologs.
- the hsa-miR-671-5p gene can be obtained by the method described in Berezikov E, et al., 2006, Genome Res, 16: p1299-1298.
- “Hsa-miR-671-5p” is known as “hsa-mir-671” (miRBase Accession No. MI0003760, SEQ ID NO: 644) having a hairpin-like structure as a precursor.
- a mature miRNA when cleaved as a mature miRNA from an RNA precursor having a hairpin-like structure, it may be cleaved from one to several bases before or after the sequence, or may have a base substitution.
- the resulting mutant may be called isomiR (Morin RD. Et al., 2008, Genome Res., Vol. 18, p.610-621).
- miRBBase Release 20 in addition to the nucleotide sequence represented by any of SEQ ID NOS: 1 to 187 and 580 to 611, the nucleotide sequence represented by any of SEQ ID NOS: 372 to 579 and 645 to 684 called numerous isomiRs Variants and fragments are also shown.
- These mutants can also be obtained as miRNA having the base sequence represented by any of SEQ ID NOs: 1 to 187 and 580 to 611. That is, SEQ ID NOs: 1, 2, 4, 5, 6, 7, 10, 12, 15, 16, 18, 19, 21, 22, 24, 25, 27, 30, 31, 33, 34, 36 of the present invention.
- polynucleotides that are numerous isomiRs of SEQ ID NOs: 1 to 187 and 580 to 611 registered in miRBase can be mentioned. Further, examples of the polynucleotide containing the base sequence represented by any of SEQ ID NOs: 1 to 187 and 580 to 611 are represented by any of the precursors SEQ ID NOs: 188 to 371 and 612 to 644, respectively. A polynucleotide is mentioned.
- nucleic acid probe or primer used in the present invention binds to a specific target nucleic acid and cannot substantially bind to another nucleic acid.
- prostate cancer can be detected easily and with high accuracy. For example, it is possible to easily detect whether or not a patient has prostate cancer by using several miRNA measurement values in blood, serum and / or plasma of a patient that can be collected minimally invasively as an index.
- This figure shows hsa-miR-1343-3p represented by SEQ ID NO: 7 generated from hsa-mir-1343 represented by SEQ ID NO: 194 as a precursor, and hsa-miR represented by SEQ ID NO: 9.
- the horizontal line in the figure shows the threshold (6.84) for discriminating both groups, optimized by Fisher's discriminant analysis.
- hsa-miR-4443 The measured values of hsa-miR-4443 (SEQ ID NO: 1) of healthy subjects (50 subjects) and prostate cancer patients (17 subjects) selected as the test sample group are respectively represented on the vertical axis.
- the horizontal line in the figure indicates the threshold value (6.84) set for the learning sample group and for distinguishing both groups.
- the measured value of ⁇ 1908-5p (SEQ ID NO: 2) is represented on the vertical axis.
- the measured value of ⁇ 1908-5p (SEQ ID NO: 2) is represented on the vertical axis.
- hsa-miR-4745-5p SEQ ID NO: 12
- hsa-miR-92a-2-5p of 35 prostate cancer patients, 99 healthy subjects, and 63 breast cancer patients selected as a learning sample group
- a discriminant is created using Fisher's discriminant analysis from the measured values of (SEQ ID NO: 16), hsa-miR-6820-5p (SEQ ID NO: 135), and hsa-miR-125a-3p (SEQ ID NO: 156) (1.
- hsa-miR-4745-5p SEQ ID NO: 12
- hsa-miR-92a-2-5p (17 prostate cancer patients, 51 healthy subjects, and 30 breast cancer patients selected as the test sample group
- SEQ ID NO: 16 hsa-miR-6820-5p
- SEQ ID NO: 13 hsa-miR-125a-3p
- SEQ ID NO: 156 obtained from the discriminant prepared in the learning sample group
- the discrimination score is represented on the vertical axis and the sample group is represented on the horizontal axis.
- the dotted line in the figure indicates a discrimination boundary for discriminating both groups having a discrimination score of 0.
- Prostate Cancer Target Nucleic Acid Using a nucleic acid probe or primer for prostate cancer detection as defined above of the present invention, a prostate for detecting the presence and / or absence of prostate cancer or prostate cancer cells.
- Major target nucleic acids as cancer markers include hsa-miR-4443, hsa-miR-1908-5p, hsa-miR-4257, hsa-miR-3197, hsa-miR-3188, hsa-miR-4649-5p Hsa-miR-1343-3p, hsa-miR-6861-5p, hsa-miR-1343-5p, hsa-miR-642b-3p, hsa-miR-6741-5p, hsa-miR-4745-5p, hsa -MiR-6826-5p, hsa-miR-3663-3p, hsa-miR
- prostate cancer markers that can be combined with these miRNAs: hsa-miR-615-5p, hsa-miR-486-3p, hsa-miR-1225-3p, hsa-miR-760, hsa- miR-187-5p, hsa-miR-1203, hsa-miR-7110-5p, hsa-miR-371a-5p, hsa-miR-939-5p, hsa-miR-575, hsa-miR-92b-5p, hsa-miR-887-3p, hsa-miR-920, hsa-miR-1915-5p, hsa-miR-1231, hsa-miR-663b, hsa-miR-1225-5p, hsa-miR-16-5p, hsa-miR-423-5p, h
- prostate cancer markers that can be combined with these miRNAs: hsa-miR-4763-3p, hsa-miR-3656, hsa-miR-4488, hsa-miR-125a-3p, hsa-miR- 1469, hsa-miR-1228-5p, hsa-miR-6798-5p, hsa-miR-1268b, hsa-miR-6732-5p, hsa-miR-1915-3p, hsa-miR-4433b-3p, hsa- miR-1207-5p, hsa-miR-4433-3p, hsa-miR-6879-5p, hsa-miR-4417, hsa-miR-30c-1-3p, hsa-miR-4638-5p, hsa-miR- 6088, h
- the miRNA includes, for example, human genes containing the nucleotide sequence represented by any of SEQ ID NOs: 1 to 187 and 580 to 611 (that is, hsa-miR-4443, hsa-miR-1908-5p, hsa, respectively).
- a preferred target nucleic acid is a human gene comprising the base sequence represented by any of SEQ ID NOs: 1 to 684, or a transcription product thereof, more preferably the transcription product, ie, miRNA, a pri-miRNA that is a precursor RNA thereof. Or pre-miRNA.
- the first target gene is the hsa-miR-4443 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the second target gene is the hsa-miR-1908-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the third target gene is the hsa-miR-4257 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the fourth target gene is the hsa-miR-3197 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the fifth target gene is the hsa-miR-3188 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the sixth target gene is the hsa-miR-4649-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the seventh target gene is the hsa-miR-1343-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the eighth target gene is the hsa-miR-6861-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the ninth target gene is the hsa-miR-1343-5p gene, their homologues, their transcripts, or their mutants or derivatives. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the tenth target gene is the hsa-miR-642b-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the eleventh target gene is the hsa-miR-6741-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the twelfth target gene is the hsa-miR-4745-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the thirteenth target gene is the hsa-miR-6826-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 14th target gene is an hsa-miR-3663-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the fifteenth target gene is the hsa-miR-3131 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the sixteenth target gene is the hsa-miR-92a-2-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 17th target gene is the hsa-miR-4258 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 18th target gene is the hsa-miR-4448 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the nineteenth target gene is the hsa-miR-6125 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the twentieth target gene is the hsa-miR-6880-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 21st target gene is the hsa-miR-6132 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 22nd target gene is the hsa-miR-4467 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 23rd target gene is the hsa-miR-6749-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 24th target gene is the hsa-miR-2392 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 25th target gene is the hsa-miR-1273g-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 26th target gene is the hsa-miR-4746-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 27th target gene is the hsa-miR-1914-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 28th target gene is the hsa-miR-7845-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 29th target gene is the hsa-miR-6726-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 30th target gene is the hsa-miR-128-2-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the thirty-first target gene is the hsa-miR-4651 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the thirty-second target gene is the hsa-miR-6765-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 33rd target gene is an hsa-miR-3185 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the thirty-fourth target gene is the hsa-miR-4792 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 35th target gene is the hsa-miR-6687-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 36th target gene is the hsa-miR-5572 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 37th target gene is the hsa-miR-3619-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 38th target gene is the hsa-miR-6780b-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 39th target gene is the hsa-miR-4707-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 40th target gene is the hsa-miR-8063 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 41st target gene is the hsa-miR-4454 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the forty-second target gene is the hsa-miR-4525 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 43rd target gene is the hsa-miR-7975 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 44th target gene is an hsa-miR-744-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 45th target gene is the hsa-miR-3135b gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 46th target gene is the hsa-miR-4648 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 47th target gene is the hsa-miR-6816-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 48th target gene is the hsa-miR-4741 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 49th target gene is the hsa-miR-7150 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- a change in the expression of a legacy gene or its transcript can be a marker for prostate cancer.
- the 50th target gene is the hsa-miR-6791-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 51st target gene is the hsa-miR-1247-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 52nd target gene is the hsa-miR-7777 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 53rd target gene is the hsa-miR-4497 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 54th target gene is the hsa-miR-6090 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 55th target gene is the hsa-miR-6781-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 56th target gene is the hsa-miR-6870-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 57th target gene is the hsa-miR-6729-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 58th target gene is the hsa-miR-4530 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 59th target gene is the hsa-miR-7847-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 60th target gene is the hsa-miR-6825-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 61st target gene is the hsa-miR-4675 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 62nd target gene is the hsa-miR-3913 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 63rd target gene is the hsa-miR-4707-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 64th target gene is the hsa-miR-6885-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 65th target gene is the hsa-miR-6722-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 66th target gene is the hsa-miR-4516 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 67th target gene is the hsa-miR-6757-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 68th target gene is the hsa-miR-6840-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 69th target gene is the hsa-miR-5195-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 70th target gene is the hsa-miR-6756-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 71st target gene is the hsa-miR-6800-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 72nd target gene is the hsa-miR-6727-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 73rd target gene is the hsa-miR-6126 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 74th target gene is the hsa-miR-6872-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 75th target gene is the hsa-miR-4446-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 76th target gene is the hsa-miR-1268a gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 77th target gene is the hsa-miR-1908-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 78th target gene is the hsa-miR-3679-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 79th target gene is the hsa-miR-4534 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 80th target gene is the hsa-miR-4675 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 81st target gene is the hsa-miR-7108-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 82nd target gene is the hsa-miR-6799-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 83rd target gene is the hsa-miR-4695-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 84th target gene is the hsa-miR-3178 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 85th target gene is the hsa-miR-5090 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 86th target gene is the hsa-miR-3180 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 87th target gene is the hsa-miR-1237-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 88th target gene is the hsa-miR-4758-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 89th target gene is the hsa-miR-3184-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 90th target gene is the hsa-miR-4286 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 91st target gene is the hsa-miR-6784-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 92nd target gene is the hsa-miR-6768-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 93rd target gene is the hsa-miR-6785-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 94th target gene is the hsa-miR-4706 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 95th target gene is the hsa-miR-711 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 96th target gene is the hsa-miR-1260a gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 97th target gene is the hsa-miR-6746-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 98th target gene is the hsa-miR-6089 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 99th target gene is the hsa-miR-6821-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 100th target gene is the hsa-miR-4667-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 101st target gene is the hsa-miR-8069 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 102nd target gene is the hsa-miR-4726-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 103rd target gene is the hsa-miR-6124 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 104th target gene is the hsa-miR-4532 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 105th target gene is the hsa-miR-4486 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 106th target gene is the hsa-miR-4728-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 107th target gene is an hsa-miR-4508 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 108th target gene is the hsa-miR-128-1-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 109th target gene is the hsa-miR-4513 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 110th target gene is the hsa-miR-6695-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 111th target gene is the hsa-miR-4689 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 112th target gene is the hsa-miR-6673-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 113th target gene is the hsa-miR-8072 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 114th target gene is the hsa-miR-6765-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 115th target gene is the hsa-miR-4419b gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 116th target gene is the hsa-miR-7641 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 117th target gene is the hsa-miR-3928-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 118th target gene is the hsa-miR-1227-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 119th target gene is the hsa-miR-4492 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 120th target gene is an hsa-miR-296-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 121st target gene is the hsa-miR-6769a-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 122nd target gene is the hsa-miR-6889-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 123rd target gene is the hsa-miR-4632-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 124th target gene is the hsa-miR-4505 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 125th target gene is the hsa-miR-3154 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 126th target gene is the hsa-miR-3648 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 127th target gene is the hsa-miR-4442 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 128th target gene is the hsa-miR-3141 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 129th target gene is the hsa-miR-7113-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 130th target gene is the hsa-miR-6819-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 131st target gene is the hsa-miR-3195 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 132nd target gene is the hsa-miR-1199-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 133rd target gene is the hsa-miR-6738-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 134th target gene is the hsa-miR-4656 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 135th target gene is the hsa-miR-6820-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 136th target gene is the hsa-miR-615-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- This gene or its transcripts can serve as markers for prostate cancer (Patent Document 1).
- the 137th target gene is the hsa-miR-486-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- hsa-miR-486-3p a homologue thereof
- a transcription product thereof or a mutant or derivative thereof.
- Patent Document 1 There have been reports that changes in the expression of this gene or its transcripts can serve as markers for prostate cancer.
- the 138th target gene is the hsa-miR-1225-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- This gene or its transcripts can serve as markers for prostate cancer (Patent Document 1).
- the 139th target gene is the hsa-miR-760 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. There have been reports that changes in the expression of this gene or its transcripts can serve as markers for prostate cancer (Patent Document 1).
- the 140th target gene is the hsa-miR-187-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. There have been reports that changes in the expression of this gene or its transcripts can serve as markers for prostate cancer (Patent Document 1).
- the 141st target gene is the hsa-miR-1203 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- This gene or its transcripts can serve as markers for prostate cancer (Patent Document 1).
- the 142nd target gene is the hsa-miR-7110-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- This gene or its transcripts can serve as markers for prostate cancer (Patent Document 1).
- the target gene 143 is the hsa-miR-371a-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. There have been reports that changes in the expression of this gene or its transcripts can serve as markers for prostate cancer (Patent Document 1).
- the 144th target gene is the hsa-miR-939-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- This gene or its transcripts can serve as markers for prostate cancer (Patent Document 1).
- the 145th target gene is the hsa-miR-575 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- This gene or its transcripts can serve as markers for prostate cancer (Patent Document 1).
- the 146th target gene is the hsa-miR-92b-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- Patent Document 2 There have been reports that changes in the expression of this gene or its transcripts can serve as markers for prostate cancer.
- the 147th target gene is the hsa-miR-887-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- This gene or its transcripts can serve as markers for prostate cancer (Patent Document 1).
- the 148th target gene is the hsa-miR-920 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- This gene or its transcripts can serve as markers for prostate cancer (Patent Document 1).
- the 149th target gene is the hsa-miR-1915-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- Patent Document 1 There have been reports that changes in the expression of this gene or its transcripts can serve as markers for prostate cancer.
- the 150th target gene is the hsa-miR-1231 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. There have been reports that changes in the expression of this gene or its transcripts can serve as markers for prostate cancer (Patent Document 1).
- the 151st target gene is the hsa-miR-663b gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- Patent Document 1 There have been reports that changes in the expression of this gene or its transcripts can serve as markers for prostate cancer.
- the 152th target gene is an hsa-miR-1225-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- This gene or its transcripts can serve as markers for prostate cancer (Patent Document 1).
- the 153rd target gene is the hsa-miR-4763-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 154th target gene is the hsa-miR-3656 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 155th target gene is the hsa-miR-4488 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 156th target gene is the hsa-miR-125a-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- Patent Document 1 There have been reports that changes in the expression of this gene or its transcripts can serve as markers for prostate cancer.
- the 157th target gene is the hsa-miR-1469 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 158th target gene is an hsa-miR-1228-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- This gene or its transcripts can serve as markers for prostate cancer (Patent Document 1).
- the 159th target gene is the hsa-miR-6798-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 160th target gene is the hsa-miR-1268b gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- This gene or its transcripts can serve as markers for prostate cancer (Patent Document 1).
- the 161st target gene is the hsa-miR-6732-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 162nd target gene is the hsa-miR-1915-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- This gene or its transcripts can serve as markers for prostate cancer (Patent Document 1).
- the 163rd target gene is the hsa-miR-4433b-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 164th target gene is the hsa-miR-1207-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- Patent Document 1 There have been reports that changes in the expression of this gene or its transcripts can serve as markers for prostate cancer.
- the 165th target gene is the hsa-miR-4433-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 166th target gene is the hsa-miR-6879-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the target gene 167 is the hsa-miR-4417 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 168th target gene is the hsa-miR-30c-1-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- Patent Document 1 There have been reports that changes in the expression of this gene or its transcripts can serve as markers for prostate cancer.
- the 169th target gene is the hsa-miR-4638-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 170th target gene is the hsa-miR-6088 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 171st target gene is the hsa-miR-4270 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 172nd target gene is the hsa-miR-6782-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 173rd target gene is the hsa-miR-665 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- This gene or its transcripts can serve as markers for prostate cancer (Patent Document 1).
- the 174th target gene is the hsa-miR-486-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- This gene or its transcripts can serve as markers for prostate cancer (Patent Document 1).
- the 175th target gene is the hsa-miR-4655-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 176th target gene is the hsa-miR-1275 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- This gene or its transcripts can serve as markers for prostate cancer (Patent Document 1).
- the 177th target gene is the hsa-miR-6806-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 178th target gene is an hsa-miR-614 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- hsa-miR-614 gene a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- the 179th target gene is the hsa-miR-3937 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 180th target gene is the hsa-miR-6752-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the target gene 181 is the hsa-miR-6671-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 182nd target gene is the hsa-miR-4450 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 183rd target gene is the hsa-miR-211-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- This gene or its transcripts can serve as markers for prostate cancer (Patent Document 1).
- the 184th target gene is the hsa-miR-663a gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- This gene or its transcripts can serve as markers for prostate cancer (Patent Document 1).
- the 185th target gene is the hsa-miR-6842-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 186th target gene is the hsa-miR-7114-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 187th target gene is an hsa-miR-6679-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of this gene or its transcript can serve as a marker for prostate cancer.
- the 580th target gene is the hsa-miR-204-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the 581 target gene is the hsa-miR-642a-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the target gene of 582 is the hsa-miR-762 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the 583 target gene is the hsa-miR- 1202 gene, homologues thereof, transcripts thereof, or mutants or derivatives thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the 584th target gene is the hsa-miR-3162-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the 585th target gene is the hsa-miR-3196 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the 586th target gene is the hsa-miR-3622a-5p gene, their homologues, their transcripts, or their mutants or derivatives. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the 587 target gene is the hsa-miR-3665 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the 588th target gene is the hsa-miR-3940-5p gene, their homologues, their transcripts, or their mutants or derivatives. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the 589th target gene is the hsa-miR-4294 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the 590th target gene is the hsa-miR-4466 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the 591st target gene is the hsa-miR-4476 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the 592th target gene is the hsa-miR-4723-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the 593rd target gene is the hsa-miR-4725-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the 594th target gene is the hsa-miR-4730 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the 595th target gene is the hsa-miR-4739 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the 596th target gene is the hsa-miR-4787-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the 597th target gene is the hsa-miR-5787 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the 598th target gene is the hsa-miR-6085 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the 599 target gene is the hsa-miR-6717-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the 600th target gene is the hsa-miR-6724-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the target gene 601 is the hsa-miR-6777-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the target gene 602 is the hsa-miR-6778-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the 603rd target gene is the hsa-miR-6787-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the 604th target gene is the hsa-miR-6789-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the 605th target gene is the hsa-miR-6845-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the 606th target gene is the hsa-miR-6893-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can be markers for prostate cancer.
- the target gene 607 is the hsa-miR-16-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- Patent Document 2 There have been reports that changes in the expression of genes or their transcripts can serve as markers for prostate cancer.
- the 608th target gene is the hsa-miR-423-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- Patent Document 2 There have been reports that changes in the expression of genes or their transcripts can serve as markers for prostate cancer.
- the 609th target gene is the hsa-miR-451a gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- Patent Document 2 There have been reports that changes in the expression of genes or their transcripts can serve as markers for prostate cancer.
- the 610th target gene is the hsa-miR-564 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- Patent Document 2 There have been reports that changes in the expression of genes or their transcripts can serve as markers for prostate cancer.
- the target gene 611 is the hsa-miR-671-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- Patent Document 2 There have been reports that changes in the expression of genes or their transcripts can serve as markers for prostate cancer.
- nucleic acid probe or primer for detection of prostate cancer a nucleic acid capable of specifically binding to the target nucleic acid as the prostate cancer marker is a nucleic acid for detecting or diagnosing prostate cancer, such as a nucleic acid. It can be used as a probe or primer.
- the nucleic acid probe or primer that can be used for detecting prostate cancer or diagnosing prostate cancer is a target nucleic acid as the above-mentioned prostate cancer marker, for example, human-derived hsa- miR-4443, hsa-miR-1908-5p, hsa-miR-4257, hsa-miR-3197, hsa-miR-3188, hsa-miR-4649-5p, hsa-miR-1343-3p, hsa-miR- 6861-5p, hsa-miR-1343-5p, hsa-miR-642b-3p, hsa-miR-6741-5p, hsa-miR-4745-5p, hsa-miR-6826-5p, hsa-miR-3663 3p, hsa-miR-3131, hsa-miR
- the target nucleic acids described above may increase or decrease in their expression level depending on the type of the target nucleic acid in a subject afflicted with prostate cancer compared to a healthy subject (hereinafter referred to as “the target nucleic acid”). Referred to as “increase / decrease”). Therefore, the nucleic acid of the present invention measures the expression level of the target nucleic acid in a body fluid derived from a subject suspected of having prostate cancer (for example, human) and a body fluid derived from a healthy body, It can be used effectively to detect cancer.
- the nucleic acid probe or primer that can be used in the present invention is a nucleic acid probe that can specifically bind to a polynucleotide comprising the base sequence represented by at least one of SEQ ID NOs: 1 to 135 and 580 to 606, or SEQ ID NO: 1
- the nucleic acid probe or primer that can be used in the present invention is further a nucleic acid probe that can specifically bind to a polynucleotide comprising the base sequence represented by at least one of SEQ ID NOS: 136 to 152 and 607 to 611, or SEQ ID NO: Primers for amplifying a polynucleotide comprising a base sequence represented by at least one of 136 to 152 and 607 to 611 can be included.
- the nucleic acid probe or primer that can be used in the present invention is further a nucleic acid probe that can specifically bind to a polynucleotide consisting of the base sequence represented by at least one of SEQ ID NOs: 153 to 187, or A primer for amplifying a polynucleotide comprising the base sequence represented by at least one can be further included.
- the nucleic acid probe or primer includes a polynucleotide group including a base sequence represented by any of SEQ ID NOs: 1 to 684, or a base sequence in which u is t in the base sequence, and a complementary sequence thereof
- nucleic acid probes or primers that can be used in the present invention are one or a plurality of polynucleotides selected from the group consisting of any of the following polynucleotides (a) to (e).
- A a polynucleotide comprising the nucleotide sequence represented by any one of SEQ ID NOs: 1-135, 580-606, or a nucleotide sequence in which u is t in the nucleotide sequence, a variant thereof, a derivative thereof, or 15 or more A fragment thereof containing a continuous base of (B) a polynucleotide comprising the base sequence represented by any of SEQ ID NOs: 1-135, 580-606, (C) a polynucleotide comprising a base sequence complementary to the base sequence represented by any of SEQ ID NOs: 1-135, 580-606, or the base sequence in which u is t in the base sequence, a variant thereof, A derivative thereof, or a fragment thereof comprising 15 or more consecutive bases, (D) a polynucleotide comprising a base sequence complementary to the base sequence represented by any of SEQ ID NOs: 1-135, 580-606, or a base sequence in which u is t in the base
- the nucleic acid probe or primer usable in the present invention further includes the following (f) to (j) in addition to at least one polynucleotide selected from any of the above-mentioned polynucleotides (a) to (e): ) Can be included.
- Its fragments including (G) a polynucleotide comprising the base sequence represented by any of SEQ ID NOs: 136 to 152 and 607 to 611, (H) a polynucleotide comprising a base sequence complementary to the base sequence represented by any of SEQ ID NOS: 136 to 152 or 607 to 611, or the base sequence in which u is t in the base sequence, a variant thereof, A derivative thereof, or a fragment thereof comprising 15 or more consecutive bases, (I) a polynucleotide comprising a base sequence complementary to the base sequence represented by any one of SEQ ID NOS: 136 to 152 and
- the nucleic acid probe or primer usable in the present invention further includes the following (k) to (o) in addition to at least one polynucleotide selected from any of the above-mentioned polynucleotides (a) to (j): ) Can be included.
- (K) comprising a polynucleotide consisting of the base sequence represented by any of SEQ ID NOs: 153 to 187 or a base sequence in which u is t in the base sequence, a variant thereof, a derivative thereof, or 15 or more consecutive bases Its fragments, (L) a polynucleotide comprising the base sequence represented by any of SEQ ID NOs: 153 to 187, (M) a polynucleotide comprising a nucleotide sequence complementary to the nucleotide sequence represented by any of SEQ ID NOs: 153 to 187, or a nucleotide sequence in which u is t in the nucleotide sequence, a variant thereof, a derivative thereof, or Its fragments containing 15 or more consecutive bases, (N) a polynucleotide comprising a base sequence complementary to the base sequence represented by any of SEQ ID NOs: 153 to 187, or the base sequence in which u is t in the base
- the fragment containing 15 or more consecutive bases refers to, for example, 15 to less than the total number of bases in the sequence, 17 to less than the total number of bases in the sequence, 19 To less than the total number of bases in the sequence, etc., but not limited thereto.
- Any of the above polynucleotides or fragments thereof used in the present invention may be DNA or RNA.
- the above-mentioned polynucleotide that can be used in the present invention can be prepared using a general technique such as a DNA recombination technique, a PCR method, or a method using a DNA / RNA automatic synthesizer.
- DNA recombination techniques and PCR methods are described, for example, in Ausubel et al., Current Protocols in Molecular Biology, John Willy & Sons, US (1993); Sambrook et al., Molecular Cloning A Laboratory S. The techniques described can be used.
- Such a nucleic acid probe or primer can be chemically synthesized using an automatic DNA synthesizer.
- the phosphoramidite method is used for this synthesis, and single-stranded DNA of up to about 100 bases can be automatically synthesized by this method.
- Automatic DNA synthesizers are commercially available from, for example, Polygen, ABI, Applied BioSystems, and the like.
- the polynucleotide of the present invention can also be prepared by a cDNA cloning method.
- a cDNA cloning method for example, microRNA Cloning Kit Wako can be used as the cDNA cloning technique.
- the nucleic acid probe and primer sequences for detecting a polynucleotide comprising the nucleotide sequence represented by any of SEQ ID NOs: 1 to 187 and 580 to 611 are present in vivo as miRNA or a precursor thereof.
- the base sequences represented by SEQ ID NO: 7 and SEQ ID NO: 9 are generated from the precursor represented by SEQ ID NO: 194, and this precursor has a hairpin-like structure as shown in FIG.
- the base sequences represented by SEQ ID NO: 7 and SEQ ID NO: 9 have mismatch sequences with each other. For this reason, a completely complementary base sequence with respect to the base sequence represented by SEQ ID NO: 7 or 9 is not naturally generated in vivo.
- the nucleic acid probe and primer for detecting the base sequence represented by any of SEQ ID NOs: 1 to 187 and 580 to 611 have an artificial base sequence that does not exist in the living body.
- Prostate cancer detection kit or device The present invention also provides a polynucleotide that can be used as a nucleic acid probe or primer in the present invention for measuring a target nucleic acid that is a prostate cancer marker (including mutants, fragments, Or a derivative thereof; hereinafter referred to as a polynucleotide for detection)) or a kit or device for detecting prostate cancer.
- the target nucleic acid that is a prostate cancer marker in the present invention is selected from the following group 1. miR-4443, miR-1908-5p, miR-4257, miR-3197, miR-3188, miR-4649-5p, miR-1343-3p, miR-6686-5p, miR-1343-5p, miR-642b- 3p, miR-6741-5p, miR-4745-5p, miR-6826-5p, miR-3663-3p, miR-3131, miR-92a-2-5p, miR-4258, miR-4448, miR-6125, miR-6880-5p, miR-6132, miR-4467, miR-6749-5p, miR-2392, miR-1273g-3p, miR-4746-3p, miR-1914-3p, miR-7845-5p, miR- 6726-5p, miR-128-2-5p, miR 4651, miR-6765-3p, miR-3185, mi
- Additional target nucleic acids that may optionally be used for the measurement are selected from group 2 below: miR-615-5p, miR-486-3p, miR-1225-3p, miR-760, miR-187-5p, miR-1203, miR-7110-5p, miR-371a-5p, miR-939-5p, miR-575, miR-92b-5p, miR-887-3p, miR-920, miR-1915-5p, miR- 1231, miR-663b, miR-1225-5p, miR-16-5p, miR-423-5p, miR-451a, miR-564 and miR-671-5p.
- Additional target nucleic acids that may optionally be used for further measurements are selected from group 3 below: miR-4763-3p, miR-3656, miR-4488, miR-125a-3p, miR-1469, miR-1228 -5p, miR-6798-5p, miR-1268b, miR-6732-5p, miR-1915-3p, miR-4433b-3p, miR-1207-5p, miR-4433-3p, miR-6879-5p, miR -4417, miR-30c-1-3p, miR-4638-5p, miR-6088, miR-4270, miR-6782-5p, miR-665, miR-486-5p, miR-4655-5p, miR-1275 , MiR-6806-5p, miR-614, miR-3937, miR 6752-5p, miR-6771-5p, miR-4450, miR-211-3p, miR-663a, miR-6842-5p, miR-711
- the kit or device of the present invention is a nucleic acid that can specifically bind to the target nucleic acid that is the above-mentioned prostate cancer marker, preferably the nucleic acid probe or primer described in 2 above, specifically, described in 2 above It includes one or a plurality of polynucleotides selected from polynucleotides or variants thereof.
- the kit or device of the present invention includes a base sequence represented by any one of SEQ ID NOs: 1-135 and 580-606, or a base sequence in which u is t in the base sequence (or A polynucleotide comprising (or consisting of) a complementary sequence thereof, a polynucleotide that hybridizes with these polynucleotides under stringent conditions, or 15 or more consecutive bases of those polynucleotide sequences. At least one or more mutants or fragments.
- the kit or device of the present invention further includes a base sequence represented by any one of SEQ ID NOS: 136 to 152 and 607 to 611, or a base sequence in which u is t in the base sequence. Nucleotides, polynucleotides comprising (or consisting of) their complementary sequences, polynucleotides that hybridize under stringent conditions with these polynucleotides, or variants containing 15 or more consecutive bases of those polynucleotide sequences Or one or more fragments.
- the kit or device of the present invention further comprises a polynucleotide comprising (or consisting of) the base sequence represented by any of SEQ ID NOs: 153 to 187, or the base sequence in which u is t in the base sequence, and its complement
- the fragment that can be included in the kit or device of the present invention is, for example, one or more, preferably two or more polynucleotides selected from the group consisting of the following (1) to (3).
- the polynucleotide is a polynucleotide comprising a base sequence represented by any one of SEQ ID NOs: 1-135, 580-606, or a base sequence in which u is t in the base sequence, complementary thereof
- a polynucleotide comprising a sequence, a polynucleotide that hybridizes with these polynucleotides under stringent conditions, or a variant containing 15 or more, preferably 17 or more, more preferably 19 or more consecutive bases thereof.
- the polynucleotide is a polynucleotide comprising the base sequence represented by any of SEQ ID NOs: 136 to 152 and 607 to 611, or the base sequence in which u is t in the base sequence, A polynucleotide comprising a complementary sequence, a polynucleotide that hybridizes with these polynucleotides under stringent conditions, or a variant containing 15 or more, preferably 17 or more, more preferably 19 or more consecutive bases thereof. .
- the polynucleotide is a polynucleotide comprising the nucleotide sequence represented by any of SEQ ID NOs: 153 to 187, or a nucleotide sequence in which u is t in the nucleotide sequence, and a complementary sequence thereof. Or a polynucleotide that hybridizes with these polynucleotides under stringent conditions, or a variant containing 15 or more, preferably 17 or more, more preferably 19 or more consecutive bases thereof.
- the fragment may be a polynucleotide comprising 15 or more, preferably 17 or more, more preferably 19 or more consecutive bases.
- the size of a polynucleotide fragment is, for example, 15 to less than the total number of bases in the sequence, 17 to less than the total number of bases in the sequence, and 19 to less than the total number of bases in the sequence.
- the number of bases in the range is, for example, 15 to less than the total number of bases in the sequence, 17 to less than the total number of bases in the sequence, and 19 to less than the total number of bases in the sequence. The number of bases in the range.
- kits or device of the present invention include SEQ ID NOs: as shown in Table 1 (SEQ ID NOS: 1-187 and 580-611 corresponding to the miRNA markers in the table). 1), 2, 3, 4, 5, 6, 7, 8, 9, 10 or more of the above polynucleotides comprising the nucleotide sequence represented by
- SEQ ID NOS: 1-187 and 580-611 corresponding to the miRNA markers in the table.
- these are merely examples, and all other possible combinations are intended to be included in the present invention.
- the above-mentioned combination constituting the kit or device for discriminating between prostate cancer and healthy body includes two of the above-mentioned polynucleotides comprising the base sequence represented by the sequence number shown in Table 1. It is desirable to combine them as described above. Usually, sufficient performance can be obtained with two combinations.
- a combination of two polynucleotides consisting of a base sequence for distinguishing prostate cancer from a healthy body or a complementary sequence thereof the above-mentioned base sequences consisting of the base sequences represented by SEQ ID NOs: 1-187 and 580-611 Of the two combinations composed of the polynucleotides of 1), a combination comprising at least one polynucleotide consisting of a base sequence represented by SEQ ID NOs: 1 to 135 newly found is preferable.
- polynucleotides having cancer type specificity that can distinguish prostate cancer from not only a healthy body but also other cancers, for example, SEQ ID NOs: 1, 3, 4, 5, 6, 7, 9, 10, 12, 14, 15, 16, 17, 18, 20, 24, 29, 35, 37, 42, 51, 55, 58, 61, 63, 64, 67, 70, 72, 79, 82, 89, 91, 97, 98, 101, 103, 104, 112, 113, 114, 116, 119, 126, 135, 136, 139, 140, 141, 145, 147, 154, 155, 156, 158, 169, 173, 175, 178, 182, 580, 581, 582, 583, 584, 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 60
- a combination of polynucleotides having cancer type specificity that can distinguish prostate cancer from not only healthy subjects but also other cancers a plurality of polynucleotides selected from the cancer type specific polynucleotide group 1 are used. A combination is more preferred.
- a plurality of polynucleotides selected from the cancer type specific polynucleotide group 1 are used.
- the combinations from the polynucleotides of SEQ ID NOs: 1, 12, 16, 37, 42, 63, 119, 126, 139, 173, 178, 599, 609, and 611 included in the cancer-type specific polynucleotide group 1
- a combination including at least one polynucleotide selected from the group hereinafter, this group is referred to as “cancer type-specific polynucleotide group 2” is more preferable.
- the number of combinations of the above-mentioned cancer species-specific polynucleotides is 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, or more. However, it is more preferably a combination of four or more, and usually a combination of four can provide sufficient performance.
- a polynucleotide comprising the nucleotide sequence represented by SEQ ID NO: 1 or a complementary sequence thereof and three polynucleotides selected from the cancer species-specific polynucleotide group 1 are represented by SEQ ID NO: And a combination with a polynucleotide comprising a base sequence or a complementary sequence thereof.
- polynucleotide consisting of the base sequence represented by SEQ ID NO: 12 or its complementary sequence and the cancer type-specific polynucleotide group 1.
- SEQ ID NO: 12 the base sequence represented by SEQ ID NO: 12 or its complementary sequence
- cancer type-specific polynucleotide group 1 The combination with the polynucleotide which consists of a base sequence or its complementary sequence is illustrated.
- polynucleotide consisting of the base sequence represented by SEQ ID NO: 16 or its complementary sequence and the cancer type-specific polynucleotide group 1
- SEQ ID NO: 16 the base sequence represented by SEQ ID NO: 16 or its complementary sequence
- cancer type-specific polynucleotide group 1 The combination with the polynucleotide which consists of a base sequence or its complementary sequence is illustrated.
- polynucleotide consisting of the base sequence represented by SEQ ID NO: 37 or its complementary sequence and the cancer type-specific polynucleotide group 1.
- SEQ ID NO: 37 the base sequence represented by SEQ ID NO: 37 or its complementary sequence
- cancer type-specific polynucleotide group 1 The combination with the polynucleotide which consists of a base sequence or its complementary sequence is illustrated.
- polynucleotide consisting of the base sequence represented by SEQ ID NO: 42 or its complementary sequence and the cancer type-specific polynucleotide group 1.
- SEQ ID NO: 42 the base sequence represented by SEQ ID NO: 42 or its complementary sequence
- cancer type-specific polynucleotide group 1 The combination with the polynucleotide which consists of a base sequence or its complementary sequence is illustrated.
- polynucleotide consisting of the base sequence represented by SEQ ID NO: 63 or its complementary sequence and the cancer type-specific polynucleotide group 1.
- SEQ ID NO: 63 the base sequence represented by SEQ ID NO: 63 or its complementary sequence
- cancer type-specific polynucleotide group 1 The combination with the polynucleotide which consists of a base sequence or its complementary sequence is illustrated.
- polynucleotide consisting of the base sequence represented by SEQ ID NO: 119 or its complementary sequence and the cancer type-specific polynucleotide group 1.
- SEQ ID NO: 119 the base sequence represented by SEQ ID NO: 119 or its complementary sequence
- cancer type-specific polynucleotide group 1 The combination with the polynucleotide which consists of a base sequence or its complementary sequence is illustrated.
- polynucleotide consisting of the base sequence represented by SEQ ID NO: 126 or its complementary sequence and the cancer type specific polynucleotide group 1
- SEQ ID NO: 126 the base sequence represented by SEQ ID NO: 126 or its complementary sequence
- cancer type specific polynucleotide group 1 The combination with the polynucleotide which consists of a base sequence or its complementary sequence is illustrated.
- polynucleotide consisting of the base sequence represented by SEQ ID NO: 178 or its complementary sequence and the cancer type-specific polynucleotide group 1.
- SEQ ID NO: 178 the base sequence represented by SEQ ID NO: 178 or its complementary sequence
- cancer type-specific polynucleotide group 1 The combination with the polynucleotide which consists of a base sequence or its complementary sequence is illustrated.
- polynucleotide consisting of the base sequence represented by SEQ ID NO: 599 or its complementary sequence and the cancer type-specific polynucleotide group 1.
- SEQ ID NO: 599 or its complementary sequence the base sequence represented by SEQ ID NO: 599 or its complementary sequence
- cancer type-specific polynucleotide group 1 The combination with the polynucleotide which consists of a base sequence or its complementary sequence is illustrated.
- SEQ ID NOS: 12, 16, 37, 611 (markers: hsa-miR-4745-5p, hsa-miR-92a-2-5p, hsa-miR-3619-3p, hsa-miR-671-5p)
- Combination (2) Combination (3) sequence of SEQ ID NOs: 1, 63, 139, 611 (markers: hsa-miR-4443, hsa-miR-4707-3p, hsa-miR-760, hsa-miR-671-5p) Number 63, 158, 173, 611 (markers: hsa-miR-4707-3p, hsa-miR-1228-5p, hsa-miR-665, hsa-miR-671-5p) combination (4) SEQ ID NO: 16, 37, 139, 611 (markers: hsa-miR-92a-2-5p, h
- the kit or device of the present invention includes, in addition to the above-described polynucleotide of the present invention (which may include a variant, fragment or derivative), a known polynucleotide that enables prostate cancer detection. Nucleotides or polynucleotides that may be found in the future can also be included.
- the kit of the present invention may include an antibody for measuring a known prostate cancer test marker such as PSA, in addition to the polynucleotide of the present invention described above and a variant or fragment thereof. it can.
- polynucleotides included in the kit of the present invention, and variants or fragments thereof can be individually or arbitrarily combined and packaged in different containers.
- the kit of the present invention can include a kit for extracting nucleic acid (for example, total RNA) from body fluids, cells or tissues, a fluorescent substance for labeling, an enzyme and medium for nucleic acid amplification, instructions for use, and the like.
- nucleic acid for example, total RNA
- the device of the present invention is a device for measuring a cancer marker in which a nucleic acid such as a polynucleotide, a variant thereof, a derivative thereof, or a fragment thereof in the present invention described above is bound or attached to a solid phase, for example. is there.
- a nucleic acid such as a polynucleotide, a variant thereof, a derivative thereof, or a fragment thereof in the present invention described above is bound or attached to a solid phase, for example. is there.
- the material of the solid phase are plastic, paper, glass, silicon, and the like. From the viewpoint of ease of processing, a preferable material of the solid phase is plastic.
- the shape of the solid phase is arbitrary, for example, a square shape, a round shape, a strip shape, a film shape and the like.
- Examples of the device of the present invention include a device for measurement by a hybridization technique, and specific examples include a blotting device, a nucleic acid array (for example,
- the nucleic acid array technology uses a high-density dispenser called a spotter or arrayer on the surface of a solid phase that has been subjected to surface treatment such as introduction of functional groups such as L-lysine coat, amino group, and carboxyl group as necessary.
- the method of spotting nucleic acids the method of spraying nucleic acids onto a solid phase using an inkjet that ejects fine droplets from a nozzle with a piezoelectric element, the method of sequentially synthesizing nucleotides on a solid phase, etc.
- an array such as a chip is prepared by binding or attaching each of the nucleic acids one by one, and the target nucleic acid is measured using hybridization using this array.
- the kit or device of the present invention comprises at least one, preferably at least two, more preferably at least three, most preferably at least five or all of miRNAs that are the above-mentioned group 1 prostate cancer markers.
- the kit or device of the present invention may further optionally include at least one, preferably at least two, more preferably at least three, most preferably at least five miRNAs that are Group 2 prostate cancer markers as described above. Nucleic acids that can specifically bind to each of one or more to all of the polynucleotides can be included.
- the kit or device of the present invention may further optionally include at least one, preferably at least two, more preferably at least three, and most preferably at least five miRNAs that are Group 3 prostate cancer markers as described above. Nucleic acids that can specifically bind to each of one or more to all of the polynucleotides can be included.
- the kit or device of the present invention can be used for detection of the following 4 prostate cancers.
- the present invention further comprises miR-4443 selected from the following group in a sample using the kit or device of the present invention described in 3 (including the above-described nucleic acid that can be used in the present invention): miR-1908-5p, miR-4257, miR-3197, miR-3188, miR-4649-5p, miR-1343-3p, miR-6861-5p, miR-1343-5p, miR-642b-3p, miR- 6741-5p, miR-4745-5p, miR-6826-5p, miR-3663-3p, miR-3131, miR-92a-2-5p, miR-4258, miR-4448, miR-6125, miR-6880- 5p, miR-6132, miR-4467, miR-6749-5p, miR-2392, miR-12 3g-3p, miR-4746-3p, miR-1914-3p, miR-7845-5p, miR-6726-5p
- the above method of the present invention enables early diagnosis of cancer with minimal invasiveness, high sensitivity and specificity, thereby leading to early treatment and improvement of prognosis, as well as monitoring disease aversion and surgical Enables monitoring of the effectiveness of radiotherapeutic and chemotherapeutic treatments.
- RNA extraction reagent liquid sample kit As a method for extracting a prostate cancer-derived gene from a specimen such as blood, serum, plasma, etc. of the present invention, a reagent for RNA extraction in 3D-Gene (registered trademark) RNA extraction reagent liquid sample kit (Toray Industries, Inc.) It is particularly preferable to use an acidic phenol method (Acid Guanidinium-Phenol-Chloroform (AGPC) method) or Trizol (registered trademark) (Life Technologies). In addition, an RNA extraction reagent containing acidic phenol such as Trizol (life technologies) or Isogen (Nippon Gene) may be added to prepare. Furthermore, kits such as miRNeasy (registered trademark) Mini Kit (Qiagen) can be used, but are not limited to these methods.
- the present invention also provides the use of the kit or device of the present invention for in vitro detection of an expression product of a prostate cancer-derived miRNA gene in a subject-derived specimen.
- the kit or device is used as described above, and includes a single or any possible combination of polynucleotides that can be used in the present invention.
- the polynucleotide contained in the kit or device of the present invention can be used as a probe or primer.
- a primer Life Technologies' TaqMan (registered trademark) MicroRNA Assays, Qiagen's miScript PCR System, and the like can be used, but are not limited thereto.
- Polynucleotides contained in the kit or device of the present invention are quantitatively determined by hybridization techniques such as Northern blotting, Southern blotting, in situ hybridization, Northern hybridization, Southern hybridization, and quantitative RT-PCR.
- a known method for specifically detecting a specific gene such as an amplification technique, it can be used as a primer or a probe according to a conventional method.
- body fluid such as blood, serum, plasma, urine, etc. of the subject is collected according to the type of detection method used.
- total RNA prepared by the above-described method may be used, or various polynucleotides containing cDNA prepared based on the RNA may be used.
- the kit or device of the present invention is useful for diagnosing prostate cancer or detecting the presence or absence of morbidity.
- the detection of prostate cancer using the kit or device is performed on the kit or device using a specimen such as blood, serum, plasma, or urine from a subject suspected of having prostate cancer.
- the detection can be performed in vitro by detecting the expression level of the gene detected by the nucleic acid probe or primer contained therein.
- a base sequence represented by at least one of SEQ ID NOs: 1-135, 580-606 or a complementary sequence thereof in a sample of blood, serum, plasma, urine or the like of a subject suspected of having prostate cancer In addition, in some cases, the base sequence represented by one or more of SEQ ID NOS: 136 to 152 and 607 to 611 or a complementary sequence thereof, and in some cases, the base sequence represented by one or more of SEQ ID NOs: 153 to 187 or the complementary thereof.
- the expression level of a target miRNA marker measured by a polynucleotide comprising a sequence (including variants, fragments or derivatives thereof) is expressed in a healthy body such as blood, serum, plasma, urine or the like.
- a subject can be evaluated as having prostate cancer if there is a statistically significant difference compared to the amount.
- the method of the present invention can be combined with diagnostic imaging methods such as rectal examination, transrectal prostate ultrasonography, CT examination, MRI examination, and bone scintigraphy examination.
- diagnostic imaging methods such as rectal examination, transrectal prostate ultrasonography, CT examination, MRI examination, and bone scintigraphy examination.
- the method of the present invention can specifically detect prostate cancer and can be substantially distinguished from cancers other than prostate cancer.
- a method for detecting that a specimen using a kit or device of the present invention does not contain an expression product of a prostate cancer-derived gene or that an expression product of a prostate cancer-derived gene is contained in a subject A body fluid such as blood, serum, plasma, urine is collected, and the expression level of the target gene contained therein is determined according to one or a plurality of polynucleotides (mutants, fragments or derivatives) selected from the polynucleotide group of the present invention.
- the method for detecting prostate cancer of the present invention may also evaluate or diagnose the presence or absence of improvement of the disease or the degree of improvement when a therapeutic agent is administered to improve the disease in, for example, prostate cancer patients. it can.
- the method of the present invention includes, for example, the following steps (a), (b) and (c): (A) contacting a specimen from a subject with a polynucleotide in a kit or device of the present invention in vitro; (B) measuring the expression level of the target nucleic acid in the specimen using the polynucleotide as a nucleic acid probe or primer; (C) evaluating the presence or absence of prostate cancer (cells) in the subject based on the results of (b), Can be included.
- the present invention relates to miR-4443, miR-1908-5p, miR-4257, miR-3197, miR-3188, miR-4649-5p, miR-1343-3p, miR-6661-5p, miR -1343-5p, miR-642b-3p, miR-6741-5p, miR-4745-5p, miR-6826-5p, miR-3663-3p, miR-3131, miR-92a-2-5p, miR-4258 , MiR-4448, miR-6125, miR-6880-5p, miR-6132, miR-4467, miR-6749-5p, miR-2392, miR-1273g-3p, miR-4746-3p, miR-1914-3p MiR-7845-5p, miR-6726-5p, miR- 28-2-5p, miR-4651, miR-6765-3p, miR-3185, miR-4792, miR-6687-5p, miR-
- evaluation is not an evaluation by a doctor but an evaluation support based on a result of an in vitro examination.
- miR-4443 is hsa-miR-4443
- miR-1908-5p is hsa-miR-1908-5p
- miR-4257 is hsa-miR.
- miR-3197 is hsa-miR-3197
- miR-3188 is hsa-miR-3188
- miR-4649-5p is hsa-miR-4649-5p
- miR-1343-3p Is hsa-miR-1343-3p
- miR-6861-5p is hsa-miR-6861-5p
- miR-1343-5p is hsa-miR-1343-5p
- miR-642b-3p is hsa MiR-642b-3p
- miR-6741-5p is hsa-miR-67 1-5p
- miR-4745-5p is hsa-miR-4745-5p
- miR-6826-5p is hsa-miR-6826-5p
- miR-3663-3p is hsa-miR-3663- 3p
- miR-3131 is hsa-miR-3131
- MiR-687-5p is hsa-miR-6687-5p
- miR-5572 is hsa-miR-5572
- miR-3619-3p is hsa-miR-3619-3p
- miR-6780b-5p Is hsa-miR-6780b-5p
- miR-4707-5p is hsa-miR-4707-5p
- miR-8063 is hsa-miR-8063
- miR-4454 is hsa-miR-4454
- MiR-4525 is hsa-miR-4525
- miR-7975 is hsa-miR-7975
- miR-744-5p is hsa-miR-744-5p
- miR-3135b is hsa-miR-3135b
- MiR-4648 is hsa-miR-4648
- miR-7108-5p is hsa-miR-71 8-5p
- miR-6799-5p is hsa-miR-6799-5p
- miR-4695-5p is hsa-miR-4695-5p
- miR-3178 is hsa-miR-3178
- miR-5090 is hsa-miR-5090
- miR-3180 is hsa-miR-3180
- miR-1237-5p is hsa-miR-1237-5p
- miR-4758-5p is hsa-miR- 4758-5p
- miR-3184-5p is hsa-miR-3184-5p
- miR-4286 is hsa-miR-4286
- miR-6784-5p is hsa-miR-6784-5p
- miR-6768-5p is hsa-miR-6768-5p
- miR-678 -5p
- miR-6769a-5p is hsa-miR-6769a-5p
- miR-6889-5p is hsa-miR-6889-5p
- miR-4632-5p is hsa-miR-4632-5p
- MiR-4505 is hsa-miR-4505
- miR-3154 is hsa-miR-3154
- miR-3648 is hsa-miR-3648
- miR-4442 is hsa-miR-4442.
- MiR-3141 is hsa-miR-3141 and miR-711 -3p is hsa-miR-7113-3p
- miR-6819-5p is hsa-miR-6819-5p
- miR-3195 is hsa-miR-3195
- miR-1199-5p is hsa-miR -1199-5p
- miR-6638-5p is hsa-miR-6638-5p
- miR-4656 is hsa-miR-4656
- miR-6820-5p is hsa-miR-6820-5p
- MiR-204-3p is hsa-miR-204-3p
- miR-642a-3p is hsa-miR-642a-3p
- miR-762 is hsa-miR-762
- miR-1202 is hsa -MiR-1202
- miR-3162-5p is h
- miR-6777-5p is hsa-miR-6777-5p
- miR-6778-5p is hsa-miR-6778-5p
- miR-6787-5p is hsa-miR-6787 -5p
- miR-6789-5p is hsa-miR-6789-5p
- miR-6845-5p is hsa-miR-6845-5p
- miR-6893-5p is hsa-miR-6893 -5p.
- the nucleic acid is a polynucleotide shown in the following (a) to (e): (A) a polynucleotide comprising the nucleotide sequence represented by any one of SEQ ID NOs: 1-135, 580-606, or a nucleotide sequence in which u is t in the nucleotide sequence, a variant thereof, a derivative thereof, or 15 or more A fragment thereof containing a continuous base of (B) a polynucleotide comprising the base sequence represented by any of SEQ ID NOs: 1-135, 580-606, (C) a polynucleotide comprising a base sequence complementary to the base sequence represented by any of SEQ ID NOs: 1-135, 580-606, or the base sequence in which u is t in the base sequence, a variant thereof, A derivative thereof, or a fragment thereof comprising 15 or more consecutive bases, (D) a polynucleo
- the method of the present invention further comprises miR-615-5p, miR-486-3p, miR-1225-3p, miR-760, miR-187-5p, miR-1203, miR-7110-5p, miR-371a-5p. , MiR-939-5p, miR-575, miR-92b-5p, miR-887-3p, miR-920, miR-1915-5p, miR-1231, miR-663b, miR-1225-5p, miR-16
- a nucleic acid that can specifically bind to at least one polynucleotide selected from ⁇ 5p, miR-423-5p, miR-451a, miR-564 and miR-671-5p can be used.
- miR-615-5p is hsa-miR-615-5p
- miR-486-3p is hsa-miR-486-3p
- miR-1225-3p is hsa-miR-1225-3p.
- MiR-760 is hsa-miR-760
- miR-187-5p is hsa-miR-187-5p
- miR-1203 is hsa-miR-1203
- miR-7110-5p is hsa MiR-7110-5p
- miR-371a-5p is hsa-miR-371a-5p
- miR-939-5p is hsa-miR-939-5p
- miR-575 is hsa-miR-575
- MiR-92b-5p is hsa-miR-92b-5p
- miR-887-3p is hsa-mi -887-3p
- miR-920 is hsa-miR-920
- miR-1915-5p is hsa-miR-1915-5p
- miR-1231 is hsa-miR-1231
- miR-663b Is hsa-miR-663b
- the nucleic acid is a polynucleotide shown in the following (f) to (j): (F) a polynucleotide comprising the nucleotide sequence represented by any one of SEQ ID NOS: 136 to 152 and 607 to 611, or a nucleotide sequence in which u is t in the nucleotide sequence, a variant thereof, a derivative thereof, or 15 or more A fragment thereof containing a continuous base of (G) a polynucleotide comprising the base sequence represented by any of SEQ ID NOs: 136 to 152 and 607 to 611, (H) a polynucleotide comprising a base sequence complementary to the base sequence represented by any of SEQ ID NOS: 136 to 152 or 607 to 611, or the base sequence in which u is t in the base sequence, a variant thereof, A derivative thereof, or a fragment thereof comprising 15 or more consecutive bases, (I) a polynucleotide
- miR-4863-3p is hsa-miR-4763-3p
- miR-3656 is hsa-miR-3656
- miR-4488 is hsa-miR-4488
- miR-125a-3p Is hsa-miR-125a-3p
- miR-1469 is hsa-miR-1469
- miR-1228-5p is hsa-miR-1228-5p
- miR-6798-5p is hsa-miR-6798 -5p
- miR-1268b is hsa-miR-1268b
- miR-6732-5p is hsa-miR-6732-5p
- miR-1915-3p is hsa-miR-1915-3p
- miR -4433b-3p is hsa-miR-4433b-3p
- miR-1 07-5p is hsa-miR-1207-5
- the nucleic acid is a polynucleotide shown in the following (k) to (o): (K) a polynucleotide comprising the nucleotide sequence represented by any of SEQ ID NOs: 153 to 187, or a nucleotide sequence in which u is t in the nucleotide sequence, a variant thereof, a derivative thereof, or 15 or more consecutive bases Its fragments, including (L) a polynucleotide comprising the base sequence represented by any of SEQ ID NOs: 153 to 187, (M) a polynucleotide comprising a nucleotide sequence complementary to the nucleotide sequence represented by any of SEQ ID NOs: 153 to 187, or a nucleotide sequence in which u is t in the nucleotide sequence, a variant thereof, a derivative thereof, or Its fragments containing 15 or more consecutive bases, (N) a polynucleotide shown in the
- Specimens used in the method of the present invention include specimens prepared from a subject's biological tissue (preferably prostate tissue), body fluid such as blood, serum, plasma, urine, and the like. Specifically, an RNA-containing sample prepared from the tissue, a sample containing a polynucleotide further prepared therefrom, a body fluid such as blood, serum, plasma, urine, a part or all of a biological tissue of a subject, a biopsy, etc. Or a biological tissue extracted by surgery, etc., from which a specimen for measurement can be prepared.
- a subject's biological tissue preferably prostate tissue
- body fluid such as blood, serum, plasma, urine, and the like.
- a body fluid such as blood, serum, plasma, urine, a part or all of a biological tissue of a subject, a biopsy, etc.
- a biological tissue extracted by surgery, etc. from which a specimen for measurement can be prepared.
- a subject refers to mammals such as, but not limited to, humans, monkeys, mice, rats, and the like, preferably humans.
- the steps can be changed according to the type of specimen used as a measurement target.
- RNA When RNA is used as a measurement object, detection of prostate cancer (cells) is performed, for example, by the following steps (a), (b) and (c): (A) binding RNA prepared from a specimen of a subject or a complementary polynucleotide (cDNA) transcribed therefrom to a polynucleotide in the kit or device of the present invention; (B) Measure RNA derived from a sample bound to the polynucleotide or cDNA synthesized from the RNA by hybridization using the polynucleotide as a nucleic acid probe or by quantitative RT-PCR using the polynucleotide as a primer. Step to do, (C) a step of evaluating the presence or absence of prostate cancer (derived gene expression) based on the measurement result of (b) above; Can be included.
- steps (a), (b) and (c) (A) binding RNA prepared from a specimen of a subject or a complementary polynucleotide (cDNA
- hybridization methods for example, Northern blot method, Southern blot method, RT-PCR method, DNA chip analysis method, in situ hybridization method, Northern hybridization method, Southern hybridization method and the like can be used. .
- the presence or absence of each gene expression in RNA and the expression level thereof can be detected and measured by using the nucleic acid probe that can be used in the present invention.
- radioisotope nucleic acid probe complementary strand
- a signal derived from the formed DNA / RNA double-stranded label is detected with a radiation detector (BAS-1800II (Fuji Photo Film Co., Ltd.). ), Etc.) or a method of detecting and measuring with a fluorescence detector (STORM 865 (GE Healthcare) etc. can be exemplified).
- RNA and the expression level thereof can be detected and measured by using the above-described primers that can be used in the present invention.
- cDNA was prepared from RNA derived from the biological tissue of the subject according to a conventional method, and prepared from the detection polynucleotide of the present invention so that each target gene region could be amplified using this as a template.
- a method of detecting a double-stranded DNA obtained by hybridizing a pair of primers (consisting of a positive strand and a reverse strand that binds to the cDNA) with cDNA and performing PCR by a conventional method can be exemplified. .
- the above PCR is performed using a primer previously labeled with a radioisotope or a fluorescent substance, the PCR product is electrophoresed on an agarose gel, and then is detected with ethidium bromide or the like.
- a method of detecting by staining the double-stranded DNA and a method of detecting the double-stranded DNA produced by transferring it to a nylon membrane or the like according to a conventional method and hybridizing with a labeled nucleic acid probe can be included.
- RNA chip or DNA chip in which the nucleic acid probe (single strand or double strand) of the present invention is attached to a substrate (solid phase) is used.
- the region where the nucleic acid probe is attached is called a probe spot, and the region where the nucleic acid probe is not attached is called a blank spot.
- a gene group immobilized on a substrate generally has a name such as a nucleic acid chip, a nucleic acid array, or a microarray.
- a DNA or RNA array includes a DNA or RNA macroarray and a DNA or RNA microarray.
- the term “chip” includes all the arrays.
- 3D-Gene (registered trademark) Human miRNA Oligo chip Toray Industries, Inc.) can be used, but is not limited thereto.
- the measurement of the DNA chip is not limited.
- an image detector Teyphoon 9410 (GE Healthcare), 3D-Gene (registered trademark) scanner (Toray Industries, Inc.) or the like is used for the signal derived from the label of the nucleic acid probe)
- the method of detecting and measuring can be illustrated.
- stringent conditions refers to the extent to which a nucleic acid probe is larger than other sequences as described above (eg, average of background measurements + standard error of background measurements ⁇ 2 or more). In the measurement value) of the target sequence.
- Stringent conditions are determined by hybridization and subsequent washing conditions.
- the hybridization conditions are not limited, but for example, 30 to 60 ° C. and 1 to 24 hours in a solution containing SSC, surfactant, formamide, dextran sulfate, blocking agent and the like.
- 1 ⁇ SSC is an aqueous solution (pH 7.0) containing 150 mM sodium chloride and 15 mM sodium citrate, and the surfactant includes SDS (sodium dodecyl sulfate), Triton, or Tween.
- More preferable hybridization conditions include 3 to 10 ⁇ SSC and 0.1 to 1% SDS.
- Washing conditions after hybridization include, for example, a solution containing 0.5 ⁇ SSC at 30 ° C. and 0.1% SDS, and 0.2 at 30 ° C. There may be mentioned conditions such as continuous washing with a solution containing x SSC and 0.1% SDS and a 0.05 x SSC solution at 30 ° C. It is desirable that the complementary strand maintain a hybridized state with the target positive strand even when washed under such conditions.
- a complementary strand a strand consisting of a base sequence that is completely complementary to the target positive strand base sequence, and at least 80%, preferably at least 85%, more preferably, the strand. Examples include strands consisting of a base sequence having at least 90% or at least 95% identity, such as at least 98% or at least 99%.
- a PCR buffer having a composition such as 10 mM Tris-HCL (pH 8.3), 50 mM KCL, 1 to 2 mM MgCl 2 is used.
- the treatment may be performed for 15 seconds to 1 minute at a Tm value calculated from the primer sequence +5 to 10 ° C.
- Tm value 2 ⁇ (number of adenine residues + number of thymine residues) + 4 ⁇ (number of guanine residues + number of cytosine residues).
- TaqMan registered trademark
- MicroRNA Assays Life Technologies
- LNA registered trademark
- MicroRNA PCR Exiqon
- Ncode registered trademark
- miRNA qRT-PCT kit A commercially available measurement kit specially devised to quantitatively measure miRNA, such as (Invitrogen) may be used.
- Calculation of gene expression level is not limited, but, for example, Statistical analysis of gene expression microarray data (Speed T., Chapman and HalliCensusChemistralis. Et al., Blackwell publishing) can be used in the present invention.
- a spot can be regarded as a detection spot.
- the average value of the measured value of the blank spot can be regarded as the background, and can be subtracted from the measured value of the probe spot to obtain the gene expression level.
- the missing value of the gene expression level is excluded from the analysis target, preferably replaced with the minimum value of the gene expression level in each DNA chip, or more preferably 0.1 from the logarithmic value of the minimum value of the gene expression level. Can be replaced with the subtracted value. Furthermore, in order to remove low-signal genes, 20% or more, preferably 50%, more preferably 80% or more of the number of measurement samples is 2 to the 6th power, preferably 2 to the 8th power, more preferably 2 to 10 Only genes having gene expression levels greater than or equal to the power can be selected for analysis. Examples of normalization of gene expression levels include, but are not limited to, global normalization and quantile normalization (Bolstad, B. M. et al., 2003, Bioinformatics, Vol. 19, p185-193).
- the present invention also measures the expression level of a target gene or gene in a specimen derived from a subject using the detection polynucleotide, kit, device (for example, chip) of the present invention, or a combination thereof, and prostate cancer.
- a discriminant discriminant function
- a discriminant is created using the gene expression level of a patient-derived specimen and a healthy specimen as a teacher sample, and it is determined or evaluated that the specimen contains and / or does not contain a prostate cancer-derived gene. Provide a method.
- the present invention further uses a detection polynucleotide, kit, device (eg, chip), or a combination thereof of the present invention, and the specimen contains a prostate cancer-derived gene / or a prostate cancer-derived gene.
- a first step of measuring in vitro the expression level of a target gene in a plurality of specimens that are known to be determined or evaluated as containing no target gene, and the target gene (target nucleic acid) obtained in the first step The second step of creating a discriminant using the measured value of the expression level of the teacher as a teacher sample, the third step of measuring the expression level of the target gene in the specimen derived from the subject in vitro as in the first step Step, substituting the measured value of the expression level of the target gene obtained in the third step into the discriminant obtained in the second step, and obtaining the result obtained from the discriminant.
- a fourth step of determining or evaluating that the specimen contains a prostate cancer-derived gene or / or does not contain a prostate cancer-derived gene, wherein the target gene is the polynucleotide The method is provided such that it can be detected by a polynucleotide for detection contained in a kit or a device (for example, a chip) and a variant or fragment thereof.
- a discriminant can be created using Fisher's discriminant analysis, nonlinear discriminant analysis based on Mahalanobis distance, neural network, Support Vector Machine (SVM), etc., but is not limited to these.
- Linear discriminant analysis is a method of discriminating group affiliation using Equation 1 as a discriminant when the boundary of grouping is a straight line or a hyperplane.
- x is an explanatory variable
- w is a coefficient of the explanatory variable
- w0 is a constant term.
- the value obtained by the discriminant is called a discriminant score, and the measured value of a newly given data set is substituted into the discriminant as an explanatory variable, and the grouping can be discriminated by the code of the discriminant score.
- Fisher's discriminant analysis which is a type of linear discriminant analysis, is a dimension reduction method for selecting dimensions suitable for class discrimination. Focusing on the variance of synthetic variables, the variance of data with the same label is minimized. By constructing, a synthetic variable having high discriminating power is constructed (Venables, W. N. et al., Modern Applied Statistics with S. Fourth edition. Springer., 2002). In Fisher's discriminant analysis, a projection direction w that maximizes Equation 2 is obtained.
- ⁇ is the average of inputs
- ng is the number of data belonging to class g
- ⁇ g is the average of inputs of data belonging to class g.
- the numerator and denominator are the inter-class variance and intra-class variance when the data is projected in the direction of the vector w, respectively, and the discriminant coefficient wi is obtained by maximizing this ratio.
- Recognition “, Kyoritsu Shuppan (2009), Richard O. et al., Pattern Classification Second Edition, Wiley-Interscience, 2000).
- the Mahalanobis distance is calculated by Equation 3 in consideration of data correlation, and can be used as a nonlinear discriminant analysis for discriminating a group having a close Mahalanobis distance from each group as a belonging group.
- ⁇ is the center vector of each group
- S ⁇ 1 is the inverse matrix of the variance-covariance matrix of that group.
- the center vector is calculated from the explanatory variable x, and an average vector or a median vector can be used.
- a boundary surface called a hyperplane is used to correctly classify the data set into a known grouping, with specific data items in the data set with a known grouping as explanatory variables and the grouping to be classified as an objective variable. And determine a discriminant for classifying data using the boundary surface.
- the discriminant can determine the grouping by substituting the measured value of the newly given data set into the discriminant as an explanatory variable. Further, the discrimination result at this time may be a group to be classified, may be a probability of being classified into a group to be classified, or may be a distance from a hyperplane.
- a method for dealing with a non-linear problem a method is known in which a feature vector is non-linearly transformed into a higher dimension and linear identification is performed in the space.
- An expression in which the inner product of two elements in a non-linearly mapped space is expressed only by the input in the original space is called a kernel.
- a kernel a linear kernel, RBF (Radial Basis Function) Kernel and Gaussian kernel.
- the optimal discriminant that is, the discriminant, can be constructed only by calculating the kernel while avoiding the calculation of the features in the mapped space while actually mapping in high dimensions by the kernel (for example, Hideki Aso et al. Frontier 6 of Statistical Science, “Statistics of Pattern Recognition and Learning: New Concepts and Methods,” Iwanami Shoten (2004), Nero Christianiani et al., SVM Introduction, Kyoritsu Publishing (2008)).
- C-support vector classification (C-SVC), a kind of SVM method, creates a hyperplane by learning with two explanatory variables to determine which group an unknown data set falls into (C. Cortes et al., 1995, Machine Learning, 20, p 273-297). *
- prostate cancer patients An example of calculating a C-SVC discriminant that can be used in the method of the present invention is shown below.
- prostate cancer patients As a standard for determining that the subject is a prostate cancer patient or a healthy body, for example, prostate tissue examination can be used.
- a data set (hereinafter referred to as “learning sample group”) composed of comprehensive gene expression levels of the two groups of serum-derived specimens is prepared, and there is a clear difference in gene expression levels between the two groups.
- the discriminant by C-SVC is determined with the gene as the explanatory variable and the grouping as the target variable (eg, -1 and +1).
- Equation 4 is an objective function to be optimized, where e is all input vectors, y is an objective variable, a is a Lagrange undetermined multiplier vector, Q is a positive definite matrix, and C is a parameter for adjusting the constraint condition.
- Equation 5 is the discriminant finally obtained, and the group to which it belongs can be determined by the sign of the value obtained by the discriminant.
- x is a support vector
- y is a label indicating group membership
- a is a corresponding coefficient
- b is a constant term
- K is a kernel function.
- Equation 6 the RBF kernel defined by Equation 6 can be used.
- x represents a support vector
- ⁇ represents a kernel parameter that adjusts the complexity of the hyperplane.
- the specimen derived from the subject contains and / or does not contain the expression of the target gene derived from prostate cancer, or the expression level thereof is compared with a control derived from a healthy subject.
- a neural network a k-neighbor method, a decision tree, a logistic regression analysis, or the like can be selected.
- the method of the present invention comprises, for example, the following steps (a), (b) and (c):
- (C) The expression level of the target gene in the specimen derived from the subject is measured using the detection polynucleotide, kit or device (for example, DNA chip) according to the present invention, and measured according to the discriminant created in (b).
- x in the formulas 1 to 3, 5 and 6 is an explanatory variable, and includes a value obtained by measuring a polynucleotide selected from the polynucleotides described in Section 2 above or a fragment thereof.
- the explanatory variable for discriminating between a prostate cancer patient and a healthy body according to the present invention is, for example, a gene expression level selected from any of (1) to (3) below.
- a prostate cancer patient or healthy subject measured by any one of DNAs containing 15 or more consecutive bases in the base sequence represented by any of SEQ ID NOs: 1-135, 580-606 or its complementary sequence Gene expression level in body serum.
- a prostate cancer patient or a healthy subject measured by any one of DNAs containing 15 or more consecutive bases in the base sequence represented by any one of SEQ ID NOS: 136 to 152 and 607 to 611 or its complementary sequence Gene expression level in body serum.
- a discriminant created from a learning specimen group is used to create a discriminant.
- the data set includes the comprehensive gene expression level of the prostate cancer patient group, which is the learning sample group, and the comprehensive gene expression level of the healthy body group.
- the P value of the Whitney U test or the P value of the Wilcoxon test the magnitude of the difference in the expression level of each gene between the two groups is determined.
- Bonferroni correction for example, by multiplying the P value obtained by the test by the number of test repetitions, that is, the number of genes used in the analysis, and comparing it with the desired significance level, the first type of error in the entire test is obtained. Probability of occurrence can be suppressed.
- the absolute value (fold change) of the median expression ratio of each gene expression level is calculated between the gene expression level of the prostate cancer patient group and the gene expression level of the healthy group instead of the test, and the discriminant formula
- the gene used for the explanatory variable may be selected.
- an ROC curve may be created using the gene expression levels of the prostate cancer patient group and the healthy body group, and a gene used as an explanatory variable of the discriminant may be selected based on the AUROC value.
- a discriminant that can be calculated by the above-described various methods is created using an arbitrary number of genes having a large difference in gene expression level obtained here.
- a method of constructing a discriminant that obtains the maximum discriminating accuracy for example, a method of constructing a discriminant with any combination of genes satisfying the significance level of the P value, or a gene used to create a discriminant, gene expression There is a method in which evaluation is repeated while increasing one by one in descending order of the amount of difference (Furey TS. Et al., 2000, Bioinformatics., Vol. 16, p906-14).
- the gene expression level of another independent prostate cancer patient or healthy body is substituted into the explanatory variable, and the discrimination result of the group to which the independent prostate cancer patient or healthy body belongs is calculated. That is, the diagnostic gene set capable of detecting more universal prostate cancer by evaluating the discriminant constructed using the found diagnostic gene set and the diagnostic gene set in an independent sample group, and Find ways to distinguish prostate cancer.
- the Split-sample method for evaluating the discriminating performance (generalization) of the discriminant is preferable to use the Split-sample method for evaluating the discriminating performance (generalization) of the discriminant. That is, the data set is divided into a learning sample group and a test sample group, the gene selection and the discriminant formula are made by statistical test in the learning sample group, and the test sample group is discriminated by the discriminant formula and the test sample group The accuracy, sensitivity, and specificity are calculated using the true group to which the belongs, and the discrimination performance is evaluated. On the other hand, without dividing the data set, the gene selection and discriminant formula are created by statistical test using all the samples, and the newly prepared sample is discriminated by the discriminant to improve accuracy, sensitivity, and specificity. It is also possible to calculate and evaluate the discrimination performance.
- the present invention relates to a detection or disease diagnosis polynucleotide useful for prostate cancer diagnosis and treatment, a prostate cancer detection method using the polynucleotide, and a prostate cancer detection kit and device containing the polynucleotide I will provide a.
- a detection or disease diagnosis polynucleotide useful for prostate cancer diagnosis and treatment a prostate cancer detection method using the polynucleotide
- a prostate cancer detection kit and device containing the polynucleotide I will provide a.
- a diagnostic gene showing accuracy exceeding the diagnostic method for prostate cancer using the existing tumor marker PSA and creation of a discriminant in the method of the present invention, for example, even if it was judged negative by PSA Regardless of whether or not the final expression of prostate cancer was revealed by close examination such as computed tomography using a contrast medium.
- one or more of the above polynucleotides based on the nucleotide sequence represented by any of SEQ ID NOs: 1-135, 580-606 as described above or a complementary sequence thereof, and optionally SEQ ID NO: 136 One or two or more of the above polynucleotides based on the nucleotide sequence represented by any one of -152 and 607-611 or a complementary sequence thereof, and, optionally, the nucleotide sequence represented by any one of SEQ ID NOs: 153-187
- any combination of one or two or more of the above-described polynucleotides based on their complementary sequences is used as a diagnostic gene set.
- a discriminant is constructed by using the expression level of the diagnostic gene set in a specimen derived from a class I prostate cancer patient and a specimen derived from a class II healthy subject.
- a discriminant is constructed by using the expression level of the diagnostic gene set in a specimen derived from a class I prostate cancer patient and a specimen derived from a class II healthy subject.
- RNA extraction reagent liquid sample was obtained from 300 ⁇ L of serum obtained from a total of 193 persons including 141 healthy males and 52 prostate cancer patients in total as the above-mentioned learning specimen group and test specimen group.
- RNA extraction reagent in kit Toray Industries, Inc.
- total RNA was obtained according to the protocol specified by the company.
- 3D-Gene (registered trademark) miRNA Labeling kit total RNA from 193 sera of 141 healthy men and 52 prostate cancer patients in combination with the learning sample group and the test sample group as samples
- MiRNA was fluorescently labeled based on the protocol (ver 2.20) defined by the company using Toray Industries, Inc.
- 3D-Gene (registered trademark) Human miRNA Oligo chip equipped with probes having sequences complementary to 2,555 miRNAs among miRNAs registered in miRBBase release 20 as oligo DNA chips ), Hybridization of miRNA in total RNA with the probe on the DNA chip and washing after hybridization were performed under stringent conditions based on the protocol established by the company.
- the DNA chip was scanned using a 3D-Gene (registered trademark) scanner (Toray Industries, Inc.), an image was acquired, and the fluorescence intensity was digitized with 3D-Gene (registered trademark) Extraction (Toray Industries, Inc.).
- the digitized fluorescence intensity is converted into a logarithmic value with a base of 2 to obtain the gene expression level, and the blank value is subtracted.
- the missing value is 0.1 from the logarithmic value of the minimum value of the gene expression level in each DNA chip. Replaced with the value obtained by subtracting.
- comprehensive miRNA gene expression levels were obtained for the sera of 52 prostate cancer patients and the sera of 141 healthy men.
- R language 3.0.2 R Development Core Team (2013).
- Reference Example 2 ⁇ Collecting samples of cancer other than prostate cancer> Serum was collected from 63 breast cancer patients with informed consent who had no cancer in other organs using Venoject II vacuum blood collection tube VP-AS109K60 (Terumo Corporation). A total of 35 cancer patients and 99 healthy men were used as a learning sample group. Similarly, serum was collected from 30 breast cancer patients with no informed consent obtained from other breast cancer patients using Venoject II vacuum blood collection tube VP-AS109K60 (Terumo Corporation).
- Reference Example 1 A test sample group was composed of 17 prostate cancer patients with no cancer in any organ other than the prostate gland and 51 healthy males. Subsequent operations were performed in the same manner as in Reference Example 1.
- Example 1 ⁇ Selection of genetic markers using specimens from the learning specimen group and evaluation method for prostate cancer discrimination performance of single genetic markers using specimens from the test specimen group>
- a genetic marker for discriminating prostate cancer from a healthy specimen was selected from the learning specimen group, and examination was performed on specimens in a test specimen group independent of the learning specimen group.
- the miRNA expression levels of the learning sample group and the test sample group obtained in Reference Example 1 above were combined and normalized by quantile normalization.
- a diagnostic gene was selected using a group of learning samples.
- 50% or more of the genes of 2 6 or more genes Only genes with expression levels were selected.
- Bonferroni correction is performed on the P value obtained by the two-sided t-test assuming equal variance for each gene expression level, Genes satisfying p ⁇ 0.01 were obtained as genetic markers used as explanatory variables in the discriminant equation, and are listed in Table 3.
- a discriminant for discriminating the presence or absence of prostate cancer was created by Fisher's discriminant analysis. That is, among the 152 genes selected in the learning sample group, a polynucleotide consisting of a base sequence represented by any one of SEQ ID NOs: 1 to 135 newly found is input to Equation 2 to discriminate Table 4 shows the calculated accuracy, sensitivity, and specificity. Table 5 shows the discriminant coefficients and constant terms.
- the accuracy, sensitivity, and specificity of the test sample group were calculated, and the discriminating performance of the selected polynucleotide was verified with an independent sample (Table 4).
- the learning sample group has a prostate that is compared with the healthy body group. The results showing that the measured gene expression level of the cancer patient group was significantly low (see FIG. 2 left) could also be reproduced in the test sample group (see FIG. 2 right).
- the measurement result of the gene expression level of the prostate cancer patient group is significantly lower ( ⁇ ) or higher (+) than the healthy body group, These results were verified in the test sample group.
- the target number of prostate cancer detection was calculated using a threshold value (6.84) for discriminating both groups set in the learning sample group. Examples were 44 true negatives, 3 false positives, and 2 false negatives. From these values, an accuracy of 92.2%, sensitivity of 88.2%, and specificity of 93.6% were obtained.
- the detection performance of all the polynucleotides shown in SEQ ID NOs: 1-152 was calculated and listed in Table 4.
- Non-Patent Document 3 reports that the general sensitivity of the existing prostate cancer marker PSA is 20.5%. That is, in the test sample group, for example, SEQ ID NOs: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 103, 104, 105,
- Example 2 ⁇ Evaluation method of prostate cancer discrimination performance by combination of multiple genetic markers using test specimen group specimen> In this example, a method for evaluating prostate cancer discrimination performance by combining the genetic markers selected in Example 1 was examined.
- a newly constructed polynucleotide comprising the base sequence represented by SEQ ID NOs: 1-135 Fisher's discriminant analysis was performed on 11,340 combinations of two combinations including at least one expression level measurement value of any nucleotide, and a discriminant for determining the presence or absence of prostate cancer was constructed.
- the discriminant created above the accuracy, sensitivity, and specificity in the test sample group were calculated, and the discriminating performance of the selected polynucleotide was verified with an independent sample.
- a learning sample group Shows a scatter plot that significantly separates the measured gene expression levels from the healthy group and the prostate cancer patient group (see FIG. 3 left), and this result can also be reproduced in the test sample group (see FIG. 3 right).
- the expression level measurement value of any of the polynucleotides consisting of the nucleotide sequences represented by SEQ ID NOs: 1-135 newly found among the polynucleotides consisting of the nucleotide sequences represented by SEQ ID NOs: 1-152
- a scatter plot that significantly separates the gene expression measurement values of the healthy body group and the prostate cancer patient group can be obtained. I was able to verify.
- the expression level of any of the polynucleotides consisting of the nucleotide sequences represented by SEQ ID NOs: 1-135 newly found
- the detection performance was calculated for all two combinations (11,340) including at least one measurement value.
- 151 combinations including the measured expression level of the polynucleotide consisting of the base sequence represented by SEQ ID NO: 1 and the detection performance thereof are shown in Table 6.
- the measured expression level of a polynucleotide comprising the base sequences represented by SEQ ID NO: 1 and SEQ ID NO: 2, SEQ ID NO: 1 and SEQ ID NO: 3, SEQ ID NO: 1 and SEQ ID NO: 4, and SEQ ID NO: 1 and SEQ ID NO: 5
- the sensitivity was 94.1%, 88.2%, 88.2%, and 94.1% in the test sample group, respectively (Table 6).
- polynucleotides represented by the nucleotide sequences 1-152 shown in Table 3 obtained in Example 1 were used at least once. That is, the polynucleotide consisting of the base sequence represented by SEQ ID NOs: 1-152 has at least the expression level measurement value of any of the newly found polynucleotides consisting of the base sequence represented by SEQ ID NOs: 1-135. Two combinations including one or more were proved to have the ability to detect prostate cancer with a sensitivity higher than PSA.
- the measured expression level of the polynucleotide comprising the nucleotide sequence represented by SEQ ID NOs: 1-152 is 3, 4, 5, 6, 7, 8, 9, 10, or Even if more than that number is combined, a marker for detecting prostate cancer can be obtained with excellent sensitivity.
- the polynucleotides consisting of the base sequences represented by SEQ ID NOs: 1 to 135 newly found in Example 1 are ranked in descending order of the P value indicating statistical significance, and the higher polynucleotide (miRNA) ), Prostate cancer detection sensitivity was evaluated using a combination of one to a plurality of polynucleotides added one by one.
- the order of the combination of polynucleotides (miRNA) in this evaluation is the order that goes back from the sequence number 135 shown in Table 3 to 134 and 133 in the sequence number.
- the sensitivity in the test sample group was 29.4% for one polynucleotide, 47.1% for 2 polynucleotides, 76.5% for 3 polynucleotides, and 82 for 5 polynucleotides.
- the combination of a plurality of miRNAs is not limited to the case of adding in the order of statistical significance as described above, and any combination of a plurality of polynucleotides (miRNAs) can be used for detection of prostate cancer. it can.
- Example 3 Selection of genetic markers when all samples are used and evaluation method of prostate cancer discrimination performance of the captured genetic markers>
- the learning sample group and the test sample group used in Examples 1 and 2 were integrated, and all the samples were used to select gene markers and evaluate their prostate cancer discrimination performance.
- the miRNA expression levels for the serum of 52 prostate cancer patients and the serum of 141 healthy males obtained in Reference Example 1 above were normalized by quantile normalization.
- genes having a gene expression level of 2 6 or more in 50% or more of specimens in either the prostate cancer patient group or the healthy body group should be selected. Selected.
- Bonferroni correction was performed on the P value obtained by the two-sided t-test assuming equal variance for each gene expression level, A gene satisfying p ⁇ 0.01 was selected as a gene marker to be used as an explanatory variable of the discriminant and listed in Table 7.
- hsa-miR-4663-3p hsa-miR-3656, hsa-miR-4488, hsa-miR-125a-3p, hsa-miR-1469, hsa- miR-1228-5p, hsa-miR-6798-5p, hsa-miR-1268b, hsa-miR-6732-5p, hsa-miR-1915-3p, hsa-miR-4433b-3p, hsa-miR-1207- 5p, hsa-miR-4433-3p, hsa-miR-6879-5p, hsa-miR-4417, hsa-miR-30c-1-3p, hsa-miR-4638-5p, hsa-miR-6088, hsa- miR-4270
- the measured values of the prostate cancer patient group are significantly lower ( ⁇ ) or higher than those of the healthy body group in the polynucleotides shown in the nucleotide sequences of SEQ ID NOs: 153-187 (+) Results (Table 7) were obtained and these results could be verified in the test sample group. Therefore, by using the measured expression levels of the genes described in Table 7 alone or in combination with the measured expression levels of the genes described in Table 3, the samples newly obtained by the methods described in Examples 1 and 2 were obtained. Can be determined.
- Example 4 ⁇ Evaluation method of prostate cancer-specific discrimination performance by a combination of multiple genetic markers using test sample group samples>
- the learning sample group obtained in Reference Example 2 was used, and the serum in the control group consisting of a prostate cancer patient and a healthy body and a breast cancer patient was obtained in the same manner as in Example 1.
- miRNA gene expression levels were compared and diagnostic genes with statistical significance were selected.
- the newly selected polynucleotide comprising the nucleotide sequence represented by SEQ ID NOs: 580 to 611 is further combined with the gene marker selected in Example 1 to evaluate prostate cancer-specific discrimination performance. The method was examined.
- the miRNA expression levels of the learning sample group and the test sample group obtained in Reference Example 2 above were combined and normalized by quantile normalization.
- Fisher's discriminant analysis is performed on 1 to 4 combinations including at least one expression level measurement value of any of the polynucleotides consisting of the nucleotide sequences represented by SEQ ID NOs: 1 to 187 and 580 to 611, A discriminant was constructed to determine the presence or absence of prostate cancer.
- the prostate cancer patient group as the positive sample group and the healthy body group and the breast cancer patient group as the negative sample group
- the accuracy / Sensitivity and specificity were calculated, and the discrimination performance of the selected polynucleotide was verified with an independent sample.
- polynucleotides consisting of the base sequence represented by the above SEQ ID NOs (SEQ ID NOS: 1 to 187 and 580 to 611 corresponding to the miRNA markers in Table 1) or their complementary sequences are subject to the presence or absence of prostate cancer. In addition to providing relatively high accuracy, sensitivity, and specificity in discrimination, prostate cancer could be specifically distinguished from other cancers.
- polynucleotide that can specifically bind to the target marker include, for example, SEQ ID NOs: 1, 3, 4, 5, 6, 7, 9, 10, 12, 14, 15, 16, 17, 18, 20, 24, 29.
- the number of combinations of the above-mentioned cancer species-specific polynucleotides is 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, or more.
- the discrimination accuracy was 85% or more in the combination of 4 or more.
- Table 8-1 shows the discrimination accuracy when measured using a polynucleotide comprising the base sequence represented by SEQ ID NO: 1 or its complementary sequence.
- 94.4% in the learning sample group and accuracy in the test sample group is 91. 8%.
- the test sample group has a maximum of 96.4% The highest accuracy in the sample group was 90.8%.
- Table 8-2 shows the discrimination accuracy when measured using a polynucleotide consisting of the base sequence represented by SEQ ID NO: 12 or its complementary sequence.
- the learning sample group When measured using one combination comprising at least one polynucleotide comprising the nucleotide sequence represented by SEQ ID NO: 12 or a complementary sequence thereof, the learning sample group has an accuracy of 65.5% and the test sample group has an accuracy of 56. 1%.
- a maximum of 94.9% in the learning sample group is tested. The highest accuracy was 91.8% in the sample group.
- a maximum of 98.0% in the test sample group is tested.
- the highest accuracy in the sample group was 93.9%.
- a maximum of 98.5% in the test sample group is tested.
- the sample group showed a maximum accuracy of 94.9%.
- Table 8-3 shows the discrimination accuracy when measured using a polynucleotide consisting of the base sequence represented by SEQ ID NO: 16 or its complementary sequence.
- the learning sample group has an accuracy of 71.6% and the test sample group has an accuracy of 74. 5%.
- a maximum of 95.4% in the test sample group is tested. The highest accuracy in the sample group was 93.9%.
- test sample group when measurement is performed using three combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 16 or a complementary sequence thereof, a maximum of 97.5% in the test sample group is tested. The sample group showed a maximum accuracy of 94.9%. In addition, for example, when measurement is performed using four combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 16 or a complementary sequence thereof, the test sample group has a maximum of 98.0% The sample group showed a maximum accuracy of 88.8%.
- the discrimination accuracy when measured using a polynucleotide comprising the base sequence represented by SEQ ID NO: 37 or its complementary sequence is shown in Table 8-4.
- the learning sample group has 73.6% accuracy and the test sample group has accuracy 72. 4%.
- a maximum of 95.9% in the test sample group is tested. The sample group showed a maximum accuracy of 92.9%.
- the maximum of 97.0% in the test sample group is tested.
- the sample group showed a maximum accuracy of 92.9%.
- a maximum of 97.0% in the test sample group is tested. The sample group showed the highest accuracy of 89.8%.
- the discrimination accuracy when measured using a polynucleotide consisting of the base sequence represented by SEQ ID NO: 42 or its complementary sequence is shown in Table 8-5.
- the learning sample group has 57.4% accuracy and the test sample group has an accuracy of 59. 2%.
- a maximum of 95.4% in the test sample group is tested. The highest accuracy in the sample group was 93.9%.
- a maximum of 97.5% in the test sample group is tested.
- the sample group showed a maximum accuracy of 95.9%.
- a maximum of 96.9% in the test sample group is tested.
- the sample group showed a maximum accuracy of 94.9%.
- the discrimination accuracy when measured using a polynucleotide comprising the base sequence represented by SEQ ID NO: 63 or its complementary sequence is shown in Table 8-6.
- the learning sample group has 72.6% accuracy and the test sample group has accuracy 73. 5%.
- a maximum of 94.9% in the test sample group is tested. The sample group showed a maximum accuracy of 92.9%.
- a maximum of 95.9% in the test sample group is tested.
- the sample group showed a maximum accuracy of 95.9%.
- a maximum of 94.4% in the learning sample group is tested. The sample group showed the highest accuracy of 89.8%.
- the discrimination accuracy when measured using a polynucleotide comprising the base sequence represented by SEQ ID NO: 119 or its complementary sequence is shown in Table 8-7.
- Table 8-7 When measured using one combination including at least one polynucleotide comprising the nucleotide sequence represented by SEQ ID NO: 119 or a complementary sequence thereof, 46.9% in the learning sample group and 48. precision in the test sample group. 0% was indicated.
- a maximum of 94.9% in the test sample group is tested. The highest accuracy was 91.8% in the sample group.
- test sample group when the measurement is performed using three combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 119 or a complementary sequence thereof, a maximum of 97.4% in the test sample group is tested. The highest accuracy was 91.8% in the sample group.
- test sample group when measurement is performed using four combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 119 or a complementary sequence thereof, the test sample group has a maximum of 96.4% The sample group showed the highest accuracy of 89.8%.
- the discrimination accuracy when measured using a polynucleotide comprising the base sequence represented by SEQ ID NO: 126 or its complementary sequence is shown in Table 8-8.
- the learning sample group has 66.0% and the test sample group has an accuracy of 53. 1%.
- a maximum of 94.4% in the test sample group is tested. The highest accuracy was 91.8% in the sample group.
- the discrimination accuracy when measured using a polynucleotide comprising the base sequence represented by SEQ ID NO: 139 or its complementary sequence is shown in Table 8-9.
- the learning sample group has an accuracy of 43.7% and the test sample group has an accuracy of 40. 8%.
- a maximum of 94.4% in the test sample group is tested. The sample group showed a maximum accuracy of 92.9%.
- a maximum of 96.4% in the test sample group is tested.
- the sample group showed a maximum accuracy of 94.9%.
- a maximum of 92.4% in the test sample group is tested. The highest accuracy was 91.8% in the sample group.
- the discrimination accuracy when measured using a polynucleotide comprising the base sequence represented by SEQ ID NO: 173 or its complementary sequence is shown in Table 8-10.
- the learning sample group has an accuracy of 43.7% and the test sample group has an accuracy of 55. 1%.
- a maximum of 94.9% in the learning sample group is tested. The highest accuracy was 91.8% in the sample group.
- the maximum of 97.0% in the test sample group is tested. The highest accuracy was 91.8% in the sample group.
- a maximum of 92.4% in the test sample group is tested. The sample group showed a maximum accuracy of 95.9%.
- the discrimination accuracy when measured using a polynucleotide consisting of the base sequence represented by SEQ ID NO: 178 or its complementary sequence is shown in Table 8-11.
- Table 8-11 When measured using one combination comprising at least one polynucleotide comprising the nucleotide sequence represented by SEQ ID NO: 178 or its complementary sequence, 68.0% in the learning sample group and the highest accuracy in the test sample group 72.4%.
- a maximum of 94.4% in the learning sample group is tested. The highest accuracy was 91.8% in the sample group.
- a maximum of 96.4% in the test sample group is tested.
- the sample group showed a maximum accuracy of 94.9%.
- a maximum of 96.4% in the test sample group is tested. The highest accuracy in the sample group was 93.9%.
- the discrimination accuracy when measured using a polynucleotide comprising the base sequence represented by SEQ ID NO: 599 or its complementary sequence is shown in Table 8-12.
- Table 8-12 When measured using one combination comprising at least one polynucleotide consisting of the nucleotide sequence represented by SEQ ID NO: 599 or its complementary sequence, 61.4% in the learning sample group and the highest accuracy in the test sample group It was 65.3%.
- a maximum of 94.4% in the learning sample group is tested. The highest accuracy was 91.8% in the sample group.
- the test sample group when measured using three combinations including at least one polynucleotide consisting of the nucleotide sequence represented by SEQ ID NO: 599 or its complementary sequence, the test sample group is 97.5% at maximum The sample group showed a maximum accuracy of 92.9%.
- a maximum of 96.4% is tested in the learning sample group. The sample group showed a maximum accuracy of 94.9%.
- the discrimination accuracy when measured using a polynucleotide comprising the base sequence represented by SEQ ID NO: 609 or its complementary sequence is shown in Table 8-13.
- Table 8-13 When measured using one combination including at least one polynucleotide comprising the nucleotide sequence represented by SEQ ID NO: 609 or a complementary sequence thereof, 59.7% in the learning sample group and 65. precision in the test sample group. 3%.
- a maximum of 95.4% in the test sample group is tested. The highest accuracy was 91.8% in the sample group.
- the maximum of 96.4% in the test sample group is tested. The highest accuracy was 91.8% in the sample group.
- a maximum of 96.4% in the test sample group is tested. The sample group showed a maximum accuracy of 88.8%.
- the discrimination accuracy when measured using a polynucleotide comprising the base sequence represented by SEQ ID NO: 611 or its complementary sequence is shown in Table 8-14.
- Table 8-14 When measured using one combination comprising at least one polynucleotide comprising the nucleotide sequence represented by SEQ ID NO: 611 or its complementary sequence, 55.8% in the learning sample group and 62. Accuracy in the test sample group. 2%.
- the maximum of 94.9% in the learning sample group is tested. The highest accuracy in the sample group was 91.8%.
- prostate cancer can be detected more sensitively than existing tumor markers, so early judgment of surgical resection of cancerous part can be made. As a result, the 5-year survival rate can be improved and the recurrence rate can be lowered.
- prostate cancer can be effectively detected by a simple and inexpensive method, early detection, diagnosis and treatment of prostate cancer are possible. Further, according to the method of the present invention, prostate cancer can be detected in a minimally invasive manner using patient blood, so that prostate cancer can be detected easily and quickly. All publications, patents and patent applications cited herein are incorporated herein by reference in their entirety.
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Abstract
Description
すなわち、本発明は、以下の特徴を有する。
(1)前立腺がんマーカーである、miR-4443、miR-1908-5p、miR-4257、miR-3197、miR-3188、miR-4649-5p、miR-1343-3p、miR-6861-5p、miR-1343-5p、miR-642b-3p、miR-6741-5p、miR-4745-5p、miR-6826-5p、miR-3663-3p、miR-3131、miR-92a-2-5p、miR-4258、miR-4448、miR-6125、miR-6880-5p、miR-6132、miR-4467、miR-6749-5p、miR-2392、miR-1273g-3p、miR-4746-3p、miR-1914-3p、miR-7845-5p、miR-6726-5p、miR-128-2-5p、miR-4651、miR-6765-3p、miR-3185、miR-4792、miR-6887-5p、miR-5572、miR-3619-3p、miR-6780b-5p、miR-4707-5p、miR-8063、miR-4454、miR-4525、miR-7975、miR-744-5p、miR-3135b、miR-4648、miR-6816-5p、miR-4741、miR-7150、miR-6791-5p、miR-1247-3p、miR-7977、miR-4497、miR-6090、miR-6781-5p、miR-6870-5p、miR-6729-5p、miR-4530、miR-7847-3p、miR-6825-5p、miR-4674、miR-3917、miR-4707-3p、miR-6885-5p、miR-6722-3p、miR-4516、miR-6757-5p、miR-6840-3p、miR-5195-3p、miR-6756-5p、miR-6800-5p、miR-6727-5p、miR-6126、miR-6872-3p、miR-4446-3p、miR-1268a、miR-1908-3p、miR-3679-5p、miR-4534、miR-4675、miR-7108-5p、miR-6799-5p、miR-4695-5p、miR-3178、miR-5090、miR-3180、miR-1237-5p、miR-4758-5p、miR-3184-5p、miR-4286、miR-6784-5p、miR-6768-5p、miR-6785-5p、miR-4706、miR-711、miR-1260a、miR-6746-5p、miR-6089、miR-6821-5p、miR-4667-5p、miR-8069、miR-4726-5p、miR-6124、miR-4532、miR-4486、miR-4728-5p、miR-4508、miR-128-1-5p、miR-4513、miR-6795-5p、miR-4689、miR-6763-5p、miR-8072、miR-6765-5p、miR-4419b、miR-7641、miR-3928-3p、miR-1227-5p、miR-4492、miR-296-3p、miR-6769a-5p、miR-6889-5p、miR-4632-5p、miR-4505、miR-3154、miR-3648、miR-4442、miR-3141、miR-7113-3p、miR-6819-5p、miR-3195、miR-1199-5p、miR-6738-5p、miR-4656、miR-6820-5p、miR-204-3p、miR-642a-3p、miR-762、miR-1202、miR-3162-5p、miR-3196、miR-3622a-5p、miR-3665、miR-3940-5p、miR-4294、miR-4466、miR-4476、miR-4723-5p、miR-4725-3p、miR-4730、miR-4739、miR-4787-5p、miR-5787、miR-6085、miR-6717-5p、miR-6724-5p、miR-6777-5p、miR-6778-5p、miR-6787-5p、miR-6789-5p、miR-6845-5p及びmiR-6893-5pからなる群から選択される少なくとも1つ以上のポリヌクレオチドと特異的に結合可能な核酸を含む、前立腺がんの検出用キット。
(a)配列番号1~135、580~606のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(b)配列番号1~135、580~606のいずれかで表される塩基配列を含むポリヌクレオチド、
(c)配列番号1~135、580~606のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(d)配列番号1~135、580~606のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列を含むポリヌクレオチド、及び
(e)前記(a)~(d)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択されるポリヌクレオチドである、(1)又は(2)に記載のキット。
(f)配列番号136~152、607~611のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(g)配列番号136~152、607~611のいずれかで表される塩基配列を含むポリヌクレオチド、
(h)配列番号136~152、607~611のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(i)配列番号136~152、607~611のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列を含むポリヌクレオチド、及び
(j)前記(f)~(i)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択されるポリヌクレオチドである、(4)又は(5)に記載のキット。
(k)配列番号153~187のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(l)配列番号153~187のいずれかで表される塩基配列を含むポリヌクレオチド、
(m)配列番号153~187のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(n)配列番号153~187のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列を含むポリヌクレオチド、及び
(o)前記(k)~(n)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択されるポリヌクレオチドである、(7)又は(8)に記載のキット。
(a)配列番号1~135、580~606のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(b)配列番号1~135、580~606のいずれかで表される塩基配列を含むポリヌクレオチド、
(c)配列番号1~135、580~606のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(d)配列番号1~135、580~606のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列を含むポリヌクレオチド、及び
(e)前記(a)~(d)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択されるポリヌクレオチドである、(11)又は(12)に記載のデバイス。
(f)配列番号136~152、607~611のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(g)配列番号136~152、607~611のいずれかで表される塩基配列を含むポリヌクレオチド、
(h)配列番号136~152、607~611のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(i)配列番号136~152、607~611のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列を含むポリヌクレオチド、及び
(j)前記(f)~(i)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択されるポリヌクレオチドである、(14)又は(15)に記載のデバイス。
(k)配列番号153~187のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(l)配列番号153~187のいずれかで表される塩基配列を含むポリヌクレオチド、
(m)配列番号153~187のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(n)配列番号153~187のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列を含むポリヌクレオチド、及び
(o)前記(k)~(n)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択されるポリヌクレオチドである、(17)又は(18)に記載のデバイス。
本明細書中で使用する用語は、以下の定義を有する。
例えば、低侵襲的に採取できる患者の血液、血清及び又は血漿中の数個のmiRNA測定値を指標とし、容易に患者が前立腺がんであるか否かを検出することができる。
本発明の上記定義の前立腺がん検出用の核酸プローブ又はプライマーを使用して、前立腺がん又は前立腺がん細胞の存在及び/又は不存在を検出するための、前立腺がんマーカーとしての主要な標的核酸には、hsa-miR-4443、hsa-miR-1908-5p、hsa-miR-4257、hsa-miR-3197、hsa-miR-3188、hsa-miR-4649-5p、hsa-miR-1343-3p、hsa-miR-6861-5p、hsa-miR-1343-5p、hsa-miR-642b-3p、hsa-miR-6741-5p、hsa-miR-4745-5p、hsa-miR-6826-5p、hsa-miR-3663-3p、hsa-miR-3131、hsa-miR-92a-2-5p、hsa-miR-4258、hsa-miR-4448、hsa-miR-6125、hsa-miR-6880-5p、hsa-miR-6132、hsa-miR-4467、hsa-miR-6749-5p、hsa-miR-2392、hsa-miR-1273g-3p、hsa-miR-4746-3p、hsa-miR-1914-3p、hsa-miR-7845-5p、hsa-miR-6726-5p、hsa-miR-128-2-5p、hsa-miR-4651、hsa-miR-6765-3p、hsa-miR-3185、hsa-miR-4792、hsa-miR-6887-5p、hsa-miR-5572、hsa-miR-3619-3p、hsa-miR-6780b-5p、hsa-miR-4707-5p、hsa-miR-8063、hsa-miR-4454、hsa-miR-4525、hsa-miR-7975、hsa-miR-744-5p、hsa-miR-3135b、hsa-miR-4648、hsa-miR-6816-5p、hsa-miR-4741、hsa-miR-7150、hsa-miR-6791-5p、hsa-miR-1247-3p、hsa-miR-7977、hsa-miR-4497、hsa-miR-6090、hsa-miR-6781-5p、hsa-miR-6870-5p、hsa-miR-6729-5p、hsa-miR-4530、hsa-miR-7847-3p、hsa-miR-6825-5p、hsa-miR-4674、hsa-miR-3917、hsa-miR-4707-3p、hsa-miR-6885-5p、hsa-miR-6722-3p、hsa-miR-4516、hsa-miR-6757-5p、hsa-miR-6840-3p、hsa-miR-5195-3p、hsa-miR-6756-5p、hsa-miR-6800-5p、hsa-miR-6727-5p、hsa-miR-6126、hsa-miR-6872-3p、hsa-miR-4446-3p、hsa-miR-1268a、hsa-miR-1908-3p、hsa-miR-3679-5p、hsa-miR-4534、hsa-miR-4675、hsa-miR-7108-5p、hsa-miR-6799-5p、hsa-miR-4695-5p、hsa-miR-3178、hsa-miR-5090、hsa-miR-3180、hsa-miR-1237-5p、hsa-miR-4758-5p、hsa-miR-3184-5p、hsa-miR-4286、hsa-miR-6784-5p、hsa-miR-6768-5p、hsa-miR-6785-5p、hsa-miR-4706、hsa-miR-711、hsa-miR-1260a、hsa-miR-6746-5p、hsa-miR-6089、hsa-miR-6821-5p、hsa-miR-4667-5p、hsa-miR-8069、hsa-miR-4726-5p、hsa-miR-6124、hsa-miR-4532、hsa-miR-4486、hsa-miR-4728-5p、hsa-miR-4508、hsa-miR-128-1-5p、hsa-miR-4513、hsa-miR-6795-5p、hsa-miR-4689、hsa-miR-6763-5p、hsa-miR-8072、hsa-miR-6765-5p、hsa-miR-4419b、hsa-miR-7641、hsa-miR-3928-3p、hsa-miR-1227-5p、hsa-miR-4492、hsa-miR-296-3p、hsa-miR-6769a-5p、hsa-miR-6889-5p、hsa-miR-4632-5p、hsa-miR-4505、hsa-miR-3154、hsa-miR-3648、hsa-miR-4442、hsa-miR-3141、hsa-miR-7113-3p、hsa-miR-6819-5p、hsa-miR-3195、hsa-miR-1199-5p、hsa-miR-6738-5p、hsa-miR-4656、hsa-miR-6820-5p、hsa-miR-204-3p、hsa-miR-642a-3p、hsa-miR-762、hsa-miR-1202、hsa-miR-3162-5p、hsa-miR-3196、hsa-miR-3622a-5p、hsa-miR-3665、hsa-miR-3940-5p、hsa-miR-4294、hsa-miR-4466、hsa-miR-4476、hsa-miR-4723-5p、hsa-miR-4725-3p、hsa-miR-4730、hsa-miR-4739、hsa-miR-4787-5p、hsa-miR-5787、hsa-miR-6085、hsa-miR-6717-5p、hsa-miR-6724-5p、hsa-miR-6777-5p、hsa-miR-6778-5p、hsa-miR-6787-5p、hsa-miR-6789-5p、hsa-miR-6845-5p及びhsa-miR-6893-5pからなる群から選択される少なくとも1つ以上のmiRNAが含まれる。さらにこれらのmiRNAと組み合わせることができる他の前立腺がんマーカー、すなわち、hsa-miR-615-5p、hsa-miR-486-3p、hsa-miR-1225-3p、hsa-miR-760、hsa-miR-187-5p、hsa-miR-1203、hsa-miR-7110-5p、hsa-miR-371a-5p、hsa-miR-939-5p、hsa-miR-575、hsa-miR-92b-5p、hsa-miR-887-3p、hsa-miR-920、hsa-miR-1915-5p、hsa-miR-1231、hsa-miR-663b、hsa-miR-1225-5p、hsa-miR-16-5p、hsa-miR-423-5p、hsa-miR-451a、hsa-miR-564及びhsa-miR-671-5pからなる群から選択される少なくとも1つ以上のmiRNAも標的核酸として好ましく用いることができる。さらにこれらのmiRNAと組み合わせることができる他の前立腺がんマーカー、すなわち、hsa-miR-4763-3p、hsa-miR-3656、hsa-miR-4488、hsa-miR-125a-3p、hsa-miR-1469、hsa-miR-1228-5p、hsa-miR-6798-5p、hsa-miR-1268b、hsa-miR-6732-5p、hsa-miR-1915-3p、hsa-miR-4433b-3p、hsa-miR-1207-5p、hsa-miR-4433-3p、hsa-miR-6879-5p、hsa-miR-4417、hsa-miR-30c-1-3p、hsa-miR-4638-5p、hsa-miR-6088、hsa-miR-4270、hsa-miR-6782-5p、hsa-miR-665、hsa-miR-486-5p、hsa-miR-4655-5p、hsa-miR-1275、hsa-miR-6806-5p、hsa-miR-614、hsa-miR-3937、hsa-miR-6752-5p、hsa-miR-6771-5p、hsa-miR-4450、hsa-miR-211-3p、hsa-miR-663a、hsa-miR-6842-5p、hsa-miR-7114-5p及びhsa-miR-6779-5pからなる群から選択される少なくとも1つ以上のmiRNAも標的核酸として好ましく用いることができる。
本発明においては、上記の前立腺がんマーカーとしての標的核酸に特異的に結合可能な核酸を、前立腺がんを検出又は診断するための核酸、例えば核酸プローブ又はプライマーとして用いることができる。
(b)配列番号1~135、580~606のいずれかで表される塩基配列を含むポリヌクレオチド、
(c)配列番号1~135、580~606のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(d)配列番号1~135、580~606のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、に相補的な塩基配列を含むポリヌクレオチド、並びに、
(e)前記(a)~(d)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド。
(g)配列番号136~152、607~611のいずれかで表される塩基配列を含むポリヌクレオチド、
(h)配列番号136~152、607~611のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(i)配列番号136~152、607~611のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、に相補的な塩基配列を含むポリヌクレオチド、並びに、
(j)前記(f)~(i)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド。
(l)配列番号153~187のいずれかで表される塩基配列を含むポリヌクレオチド、
(m)配列番号153~187のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(n)配列番号153~187のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、に相補的な塩基配列を含むポリヌクレオチド、並びに、
(o)前記(k)~(n)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド。
本発明はまた、前立腺がんマーカーである標的核酸を測定するための、本発明において核酸プローブ又はプライマーとして使用可能なポリヌクレオチド(これには、変異体、断片、又は誘導体を含みうる。;以下、検出用ポリヌクレオチドと称することがある。)の1つ又は複数を含む前立腺がん検出用のキット又はデバイスを提供する。
miR-4443、miR-1908-5p、miR-4257、miR-3197、miR-3188、miR-4649-5p、miR-1343-3p、miR-6861-5p、miR-1343-5p、miR-642b-3p、miR-6741-5p、miR-4745-5p、miR-6826-5p、miR-3663-3p、miR-3131、miR-92a-2-5p、miR-4258、miR-4448、miR-6125、miR-6880-5p、miR-6132、miR-4467、miR-6749-5p、miR-2392、miR-1273g-3p、miR-4746-3p、miR-1914-3p、miR-7845-5p、miR-6726-5p、miR-128-2-5p、miR-4651、miR-6765-3p、miR-3185、miR-4792、miR-6887-5p、miR-5572、miR-3619-3p、miR-6780b-5p、miR-4707-5p、miR-8063、miR-4454、miR-4525、miR-7975、miR-744-5p、miR-3135b、miR-4648、miR-6816-5p、miR-4741、miR-7150、miR-6791-5p、miR-1247-3p、miR-7977、miR-4497、miR-6090、miR-6781-5p、miR-6870-5p、miR-6729-5p、miR-4530、miR-7847-3p、miR-6825-5p、miR-4674、miR-3917、miR-4707-3p、miR-6885-5p、miR-6722-3p、miR-4516、miR-6757-5p、miR-6840-3p、miR-5195-3p、miR-6756-5p、miR-6800-5p、miR-6727-5p、miR-6126、miR-6872-3p、miR-4446-3p、miR-1268a、miR-1908-3p、miR-3679-5p、miR-4534、miR-4675、miR-7108-5p、miR-6799-5p、miR-4695-5p、miR-3178、miR-5090、miR-3180、miR-1237-5p、miR-4758-5p、miR-3184-5p、miR-4286、miR-6784-5p、miR-6768-5p、miR-6785-5p、miR-4706、miR-711、miR-1260a、miR-6746-5p、miR-6089、miR-6821-5p、miR-4667-5p、miR-8069、miR-4726-5p、miR-6124、miR-4532、miR-4486、miR-4728-5p、miR-4508、miR-128-1-5p、miR-4513、miR-6795-5p、miR-4689、miR-6763-5p、miR-8072、miR-6765-5p、miR-4419b、miR-7641、miR-3928-3p、miR-1227-5p、miR-4492、miR-296-3p、miR-6769a-5p、miR-6889-5p、miR-4632-5p、miR-4505、miR-3154、miR-3648、miR-4442、miR-3141、miR-7113-3p、miR-6819-5p、miR-3195、miR-1199-5p、miR-6738-5p、miR-4656、miR-6820-5p、miR-204-3p、miR-642a-3p、miR-762、miR-1202、miR-3162-5p、miR-3196、miR-3622a-5p、miR-3665、miR-3940-5p、miR-4294、miR-4466、miR-4476、miR-4723-5p、miR-4725-3p、miR-4730、miR-4739、miR-4787-5p、miR-5787、miR-6085、miR-6717-5p、miR-6724-5p、miR-6777-5p、miR-6778-5p、miR-6787-5p、miR-6789-5p、miR-6845-5p及びmiR-6893-5p。
(1)配列番号1~135、580~606のいずれかで表される塩基配列においてuがtである塩基配列又はその相補的配列において、15以上の連続した塩基を含むポリヌクレオチド。
(2)配列番号136~152、607~611のいずれかで表される塩基配列においてuがtである塩基配列又はその相補的配列において、15以上の連続した塩基を含むポリヌクレオチド。
(3)配列番号153~187のいずれかで表される塩基配列においてuがtである塩基配列又はその相補的配列において、15以上の連続した塩基を含むポリヌクレオチド。
(2)配列番号1、12、63、599(マーカー:hsa-miR-4443、hsa-miR-4745-5p、hsa-miR-4707-3p、hsa-miR-6717-5p)の組み合わせ
(3)配列番号1、141、173、599(マーカー:hsa-miR-4443、hsa-miR-1203、hsa-miR-665、hsa-miR-6717-5p)の組み合わせ
(4)配列番号1、16、139、178(マーカー:hsa-miR-4443、hsa-miR-92a-2-5p、hsa-miR-760、hsa-miR-614)の組み合わせ
(5)配列番号1、63、173、599(マーカー:hsa-miR-4443、hsa-miR-4707-3p、hsa-miR-665、hsa-miR-6717-5p)の組み合わせ
(2)配列番号12、16、135、156(マーカー:hsa-miR-4745-5p、hsa-miR-92a-2-5p、hsa-miR-6820-5p、hsa-miR-125a-3p)の組み合わせ
(3)配列番号12、16、169、178(マーカー:hsa-miR-4745-5p、hsa-miR-92a-2-5p、hsa-miR-4638-5p、hsa-miR-614)の組み合わせ
(4)配列番号12、16、139、601(マーカー:hsa-miR-4745-5p、hsa-miR-92a-2-5p、hsa-miR-760、hsa-miR-6777-5p)の組み合わせ
(5)配列番号12、16、42、607(マーカー:hsa-miR-4745-5p、hsa-miR-92a-2-5p、hsa-miR-4525、hsa-miR-16-5p)の組み合わせ
(2)配列番号12、16、37、178(マーカー:hsa-miR-4745-5p、hsa-miR-92a-2-5p、hsa-miR-3619-3p、hsa-miR-614)の組み合わせ
(3)配列番号12、16、37、599(マーカー:hsa-miR-4745-5p、hsa-miR-92a-2-5p、hsa-miR-3619-3p、hsa-miR-6717-5p)の組み合わせ
(4)配列番号12、16、37、97(マーカー:hsa-miR-4745-5p、hsa-miR-92a-2-5p、hsa-miR-3619-3p、hsa-miR-6746-5p)の組み合わせ
(5)配列番号12、14、16、599(マーカー:hsa-miR-4745-5p、hsa-miR-3663-3p、hsa-miR-92a-2-5p、hsa-miR-6717-5p)の組み合わせ
(2)配列番号37、42、63、178(マーカー:hsa-miR-3619-3p、hsa-miR-4525、hsa-miR-4707-3p、hsa-miR-614)の組み合わせ
(3)配列番号37、42、63、599(マーカー:hsa-miR-3619-3p、hsa-miR-4525、hsa-miR-4707-3p、hsa-miR-6717-5p)の組み合わせ
(4)配列番号37、42、63、139(マーカー:hsa-miR-3619-3p、hsa-miR-4525、hsa-miR-4707-3p、hsa-miR-760)の組み合わせ
(5)配列番号12、16、37、603(マーカー:hsa-miR-4745-5p、hsa-miR-92a-2-5p、hsa-miR-3619-3p、hsa-miR-6787-5p)の組み合わせ
(2)配列番号42、63、609、611(マーカー:hsa-miR-4525、hsa-miR-4707-3p、hsa-miR-451a、hsa-miR-671-5p)の組み合わせ
(3)配列番号42、63、173、599(マーカー:hsa-miR-4525、hsa-miR-4707-3p、hsa-miR-665、hsa-miR-6717-5p)の組み合わせ
(4)配列番号12、16、42、609(マーカー:hsa-miR-4745-5p、hsa-miR-92a-2-5p、hsa-miR-4525、hsa-miR-451a)の組み合わせ
(5)配列番号42、63、91、609(マーカー:hsa-miR-4525、hsa-miR-4707-3p、hsa-miR-6784-5p、hsa-miR-451a)の組み合わせ
(2)配列番号42、63、599、609(マーカー:hsa-miR-4525、hsa-miR-4707-3p、hsa-miR-6717-5p、hsa-miR-451a)の組み合わせ
(3)配列番号42、63、583、609(マーカー:hsa-miR-4525、hsa-miR-4707-3p、hsa-miR-1202、hsa-miR-451a)の組み合わせ
(4)配列番号37、42、63、611(マーカー:hsa-miR-3619-3p、hsa-miR-4525、hsa-miR-4707-3p、hsa-miR-671-5p)の組み合わせ
(5)配列番号12、63、70、599(マーカー:hsa-miR-4745-5p、hsa-miR-4707-3p、hsa-miR-6756-5p、hsa-miR-6717-5p)の組み合わせ
(2)配列番号37、63、119、584(マーカー:hsa-miR-3619-3p、hsa-miR-4707-3p、hsa-miR-4492、hsa-miR-3162-5p)の組み合わせ
(3)配列番号63、119、173、178(マーカー:hsa-miR-4707-3p、hsa-miR-4492、hsa-miR-665、hsa-miR-614)の組み合わせ
(4)配列番号63、119、158、173(マーカー:hsa-miR-4707-3p、hsa-miR-4492、hsa-miR-1228-5p、hsa-miR-665)の組み合わせ
(5)配列番号63、119、173、605(マーカー:hsa-miR-4707-3p、hsa-miR-4492、hsa-miR-665、hsa-miR-6845-5p)の組み合わせ
(2)配列番号16、42、126、599(マーカー:hsa-miR-92a-2-5p、hsa-miR-4525、hsa-miR-3648、hsa-miR-6717-5p)の組み合わせ
(3)配列番号16、126、139、601(マーカー:hsa-miR-92a-2-5p、hsa-miR-3648、hsa-miR-760、hsa-miR-6777-5p)の組み合わせ
(4)配列番号16、126、593、599(マーカー:hsa-miR-92a-2-5p、hsa-miR-3648、hsa-miR-4725-3p、hsa-miR-6717-5p)の組み合わせ
(5)配列番号15、16、126、599(マーカー:hsa-miR-3131、hsa-miR-92a-2-5p、hsa-miR-3648、hsa-miR-6717-5p)の組み合わせ
(2)配列番号63、139、173、178(マーカー:hsa-miR-4707-3p、hsa-miR-760、hsa-miR-665、hsa-miR-614)の組み合わせ
(3)配列番号16、63、139、601(マーカー:hsa-miR-92a-2-5p、hsa-miR-4707-3p、hsa-miR-760、hsa-miR-6777-5p)の組み合わせ
(4)配列番号37、63、139、600(マーカー:hsa-miR-3619-3p、hsa-miR-4707-3p、hsa-miR-760、hsa-miR-6724-5p)の組み合わせ
(5)配列番号16、139、178、586(マーカー:hsa-miR-92a-2-5p、hsa-miR-760、hsa-miR-614、hsa-miR-3622a-5p)の組み合わせ
(2)配列番号63、119、173、581(マーカー:hsa-miR-4707-3p、hsa-miR-4492、hsa-miR-665、hsa-miR-642a-3p)の組み合わせ
(3)配列番号63、173、582、599(マーカー:hsa-miR-4707-3p、hsa-miR-665、hsa-miR-762、hsa-miR-6717-5p)の組み合わせ
(4)配列番号63、136、173、599(マーカー:hsa-miR-4707-3p、hsa-miR-615-5p、hsa-miR-665、hsa-miR-6717-5p)の組み合わせ
(5)配列番号29、63、173、178(マーカー:hsa-miR-6726-5p、hsa-miR-4707-3p、hsa-miR-665、hsa-miR-614)の組み合わせ
(2)配列番号16、37、139、178(マーカー:hsa-miR-92a-2-5p、hsa-miR-3619-3p、hsa-miR-760、hsa-miR-614)の組み合わせ
(3)配列番号1、12、16、178(マーカー:hsa-miR-4443、hsa-miR-4745-5p、hsa-miR-92a-2-5p、hsa-miR-614)の組み合わせ
(4)配列番号1、63、173、178(マーカー:hsa-miR-4443、hsa-miR-4707-3p、hsa-miR-665、hsa-miR-614)の組み合わせ
(5)配列番号16、139、178、597(マーカー:hsa-miR-92a-2-5p、hsa-miR-760、hsa-miR-614、hsa-miR-5787)の組み合わせ
(2)配列番号42、58、63、599(マーカー:hsa-miR-4525、hsa-miR-4530、hsa-miR-4707-3p、hsa-miR-6717-5p)の組み合わせ
(3)配列番号1、12、16、599(マーカー:hsa-miR-4443、hsa-miR-4745-5p、hsa-miR-92a-2-5p、hsa-miR-6717-5p)の組み合わせ
(4)配列番号63、119、173、599(マーカー:hsa-miR-4707-3p、hsa-miR-4492、hsa-miR-665、hsa-miR-6717-5p)の組み合わせ
(5)配列番号16、18、139、599(マーカー:hsa-miR-92a-2-5p、hsa-miR-4448、hsa-miR-760、hsa-miR-6717-5p)の組み合わせ
(2)配列番号42、63、592、609(マーカー:hsa-miR-4525、hsa-miR-4707-3p、hsa-miR-4723-5p、hsa-miR-451a)の組み合わせ
(3)配列番号18、42、581、609(マーカー:hsa-miR-4448、hsa-miR-4525、hsa-miR-642a-3p、hsa-miR-451a)の組み合わせ
(4)配列番号12、16、599、609(マーカー:hsa-miR-4745-5p、hsa-miR-92a-2-5p、hsa-miR-6717-5p、hsa-miR-451a)の組み合わせ
(5)配列番号16、126、599、609(マーカー:hsa-miR-92a-2-5p、hsa-miR-3648、hsa-miR-6717-5p、hsa-miR-451a)の組み合わせ
(2)配列番号1、63、139、611(マーカー:hsa-miR-4443、hsa-miR-4707-3p、hsa-miR-760、hsa-miR-671-5p)の組み合わせ
(3)配列番号63、158、173、611(マーカー:hsa-miR-4707-3p、hsa-miR-1228-5p、hsa-miR-665、hsa-miR-671-5p)の組み合わせ
(4)配列番号16、37、139、611(マーカー:hsa-miR-92a-2-5p、hsa-miR-3619-3p、hsa-miR-760、hsa-miR-671-5p)の組み合わせ
(5)配列番号16、37、595、611(マーカー:hsa-miR-92a-2-5p、hsa-miR-3619-3p、hsa-miR-4739、hsa-miR-671-5p)の組み合わせ
本発明はさらに、上記3で説明した本発明のキット又はデバイス(本発明で使用可能な上記の核酸を含む。)を用いて、検体中の、以下の群から選択される、miR-4443、miR-1908-5p、miR-4257、miR-3197、miR-3188、miR-4649-5p、miR-1343-3p、miR-6861-5p、miR-1343-5p、miR-642b-3p、miR-6741-5p、miR-4745-5p、miR-6826-5p、miR-3663-3p、miR-3131、miR-92a-2-5p、miR-4258、miR-4448、miR-6125、miR-6880-5p、miR-6132、miR-4467、miR-6749-5p、miR-2392、miR-1273g-3p、miR-4746-3p、miR-1914-3p、miR-7845-5p、miR-6726-5p、miR-128-2-5p、miR-4651、miR-6765-3p、miR-3185、miR-4792、miR-6887-5p、miR-5572、miR-3619-3p、miR-6780b-5p、miR-4707-5p、miR-8063、miR-4454、miR-4525、miR-7975、miR-744-5p、miR-3135b、miR-4648、miR-6816-5p、miR-4741、miR-7150、miR-6791-5p、miR-1247-3p、miR-7977、miR-4497、miR-6090、miR-6781-5p、miR-6870-5p、miR-6729-5p、miR-4530、miR-7847-3p、miR-6825-5p、miR-4674、miR-3917、miR-4707-3p、miR-6885-5p、miR-6722-3p、miR-4516、miR-6757-5p、miR-6840-3p、miR-5195-3p、miR-6756-5p、miR-6800-5p、miR-6727-5p、miR-6126、miR-6872-3p、miR-4446-3p、miR-1268a、miR-1908-3p、miR-3679-5p、miR-4534、miR-4675、miR-7108-5p、miR-6799-5p、miR-4695-5p、miR-3178、miR-5090、miR-3180、miR-1237-5p、miR-4758-5p、miR-3184-5p、miR-4286、miR-6784-5p、miR-6768-5p、miR-6785-5p、miR-4706、miR-711、miR-1260a、miR-6746-5p、miR-6089、miR-6821-5p、miR-4667-5p、miR-8069、miR-4726-5p、miR-6124、miR-4532、miR-4486、miR-4728-5p、miR-4508、miR-128-1-5p、miR-4513、miR-6795-5p、miR-4689、miR-6763-5p、miR-8072、miR-6765-5p、miR-4419b、miR-7641、miR-3928-3p、miR-1227-5p、miR-4492、miR-296-3p、miR-6769a-5p、miR-6889-5p、miR-4632-5p、miR-4505、miR-3154、miR-3648、miR-4442、miR-3141、miR-7113-3p、miR-6819-5p、miR-3195、miR-1199-5p、miR-6738-5p、miR-4656、miR-6820-5p、miR-204-3p、miR-642a-3p、miR-762、miR-1202、miR-3162-5p、miR-3196、miR-3622a-5p、miR-3665、miR-3940-5p、miR-4294、miR-4466、miR-4476、miR-4723-5p、miR-4725-3p、miR-4730、miR-4739、miR-4787-5p、miR-5787、miR-6085、miR-6717-5p、miR-6724-5p、miR-6777-5p、miR-6778-5p、miR-6787-5p、miR-6789-5p、miR-6845-5p及びmiR-6893-5pで表される前立腺がん由来の遺伝子の発現量、並びに場合により、以下の群から選択される、miR-615-5p、miR-486-3p、miR-1225-3p、miR-760、miR-187-5p、miR-1203、miR-7110-5p、miR-371a-5p、miR-939-5p、miR-575、miR-92b-5p、miR-887-3p、miR-920、miR-1915-5p、miR-1231、miR-663b、miR-1225-5p、miR-16-5p、miR-423-5p、miR-451a、miR-564及びmiR-671-5pで表される前立腺がん由来の遺伝子の発現量、並びに場合により、以下の群から選択される、miR-4763-3p、miR-3656、miR-4488、miR-125a-3p、miR-1469、miR-1228-5p、miR-6798-5p、miR-1268b、miR-6732-5p、miR-1915-3p、miR-4433b-3p、miR-1207-5p、miR-4433-3p、miR-6879-5p、miR-4417、miR-30c-1-3p、miR-4638-5p、miR-6088、miR-4270、miR-6782-5p、miR-665、miR-486-5p、miR-4655-5p、miR-1275、miR-6806-5p、miR-614、miR-3937、miR-6752-5p、miR-6771-5p、miR-4450、miR-211-3p、miR-663a、miR-6842-5p、miR-7114-5p及びmiR-6779-5pで表される前立腺がん由来の遺伝子の発現量、の1つ以上で表される前立腺がん由来の遺伝子の発現量、をin vitroで測定し、さらに、前立腺がんの罹患が疑われる被験体と、健常体(非前立腺がん患者を含む)とから採取した血液、血清、血漿等の検体について、検体中の上記遺伝子の発現量と、健常体の対照発現量とを用いて、たとえば両発現量を比較して、当該検体中の標的核酸の発現量に統計学的に有意に差がある場合、被験体が、前立腺がんに罹患していると評価することを含む、前立腺がんの検出方法を提供する。
(a)被験体由来の検体を、in vitroで、本発明のキット又はデバイス中のポリヌクレオチドと接触させるステップ、
(b)検体中の標的核酸の発現量を、上記ポリヌクレオチドを核酸プローブ又はプライマーとして用いて測定するステップ、
(c)(b)の結果をもとに、当該被験体中の前立腺がん(細胞)の存在又は不存在を評価するステップ、
を含むことができる。
(a)配列番号1~135、580~606のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(b)配列番号1~135、580~606のいずれかで表される塩基配列を含むポリヌクレオチド、
(c)配列番号1~135、580~606のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(d)配列番号1~135、580~606のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、に相補的な塩基配列を含むポリヌクレオチド、及び
(e)前記(a)~(d)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択される。
(f)配列番号136~152、607~611のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(g)配列番号136~152、607~611のいずれかで表される塩基配列を含むポリヌクレオチド、
(h)配列番号136~152、607~611のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(i)配列番号136~152、607~611のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、に相補的な塩基配列を含むポリヌクレオチド、及び
(j)前記(f)~(i)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択される。
(k)配列番号153~187のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(l)配列番号153~187のいずれかで表される塩基配列を含むポリヌクレオチド、
(m)配列番号153~187のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(n)配列番号153~187のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、に相補的な塩基配列を含むポリヌクレオチド、及び
(o)前記(k)~(n)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択されるポリヌクレオチドである。
(a)被験体の検体から調製されたRNA又はそれから転写された相補的ポリヌクレオチド(cDNA)を、本発明のキット又はデバイス中のポリヌクレオチドと結合させるステップ、
(b)当該ポリヌクレオチドに結合した検体由来のRNA又は当該RNAから合成されたcDNAを、上記ポリヌクレオチドを核酸プローブとして用いるハイブリダイゼーションによって、あるいは、上記ポリヌクレオチドをプライマーとして用いる定量RT-PCRによって測定するステップ、
(c)上記(b)の測定結果に基づいて、前立腺がん(由来の遺伝子の発現)の存在又は不存在を評価するステップ、
を含むことができる。
また、定量RT-PCR法を用いる場合には、TaqMan(登録商標) MicroRNA Assays(Life Technologies社):LNA(登録商標)-based MicroRNA PCR(Exiqon社):Ncode(登録商標) miRNA qRT-PCT キット(invitrogen社)などの、miRNAを定量的に測定するために特別に工夫された市販の測定用キットを用いてもよい。
(a)前立腺がん患者由来の前立腺がん由来遺伝子を含む組織及び/又は健常体由来の前立腺がん由来遺伝子を含まない組織であることが既に知られている検体中の標的遺伝子の発現量を、本発明による検出用ポリヌクレオチド、キット又はデバイス(例えばDNAチップ)を用いて測定するステップ、
(b)(a)で測定された発現量の測定値から、上記の式1~3、5及び6の判別式を作成するステップ、
(c)被験体由来の検体中の当該標的遺伝子の発現量を、本発明による検出用ポリヌクレオチド、キット又はデバイス(例えばDNAチップ)を用いて測定し、(b)で作成した判別式に測定値を代入して、得られた結果に基づいて検体が前立腺がん由来の標的遺伝子を含むこと及び/又は含まないことを決定又は評価するステップ、あるいはその発現量を健常体由来の対照と比較し評価するステップ、
を含むことができる。ここで、式1~3、5及び6の式中のxは説明変数であり、上記2節に記載したポリヌクレオチド類から選択されるポリヌクレオチド又はその断片を測定することによって得られる値を含み、具体的には本発明の前立腺がん患者と健常体を判別するための説明変数は、例えば下記の(1)~(3)のいずれかより選択される遺伝子発現量である。
(2)配列番号136~152、607~611のいずれかで表される塩基配列又はその相補的配列において、15以上の連続した塩基を含むDNAのいずれかによって測定される前立腺がん患者もしくは健常体の血清における遺伝子発現量。
(3)配列番号153~187のいずれかで表される塩基配列又はその相補的配列において、15以上の連続した塩基を含むDNAのいずれかによって測定される前立腺がん患者もしくは健常体の血清における遺伝子発現量。
<前立腺がん患者と健常体の検体の採取>
インフォームドコンセントを得た健常体男性94人と前立腺以外の臓器にがんが認められていない前立腺がん患者35人(ステージIIが30例、ステージIIIが1例、ステージIVが4例)(表2-1)からベノジェクトII真空採血管VP-AS109K60(テルモ株式会社)を用いてそれぞれ血清を採取し、学習検体群とした。同様に、インフォームドコンセントを得た健常体男性47人と前立腺以外の臓器にがんが認められていない前立腺がん患者17人(ステージIIが15例、ステージIIIが2例)(表2-2)からベノジェクトII真空採血管VP-AS109K60(テルモ株式会社)を用いてそれぞれ血清を採取し、テスト検体群とした。
検体として上記学習検体群、テスト検体群合わせて健常体男性141人と前立腺がん患者52人の合計193人からそれぞれ得られた血清300μLから、3D-Gene(登録商標)RNA extraction reagent from liquid sample kit(東レ株式会社)中のRNA抽出用試薬を用いて、同社の定めるプロトコールに従ってtotal RNAを得た。
検体として上記学習検体群、テスト検体群合わせて健常体男性141人と前立腺がん患者52人の合計193人の血清から得たtotal RNAに対して、3D-Gene(登録商標)miRNA Labeling kit(東レ株式会社)を用いて同社が定めるプロトコール(ver2.20)に基づいてmiRNAを蛍光標識した。オリゴDNAチップとして、miRBase release 20に登録されているmiRNAの中で、2、555種のmiRNAと相補的な配列を有するプローブを搭載した3D-Gene(登録商標)Human miRNA Oligo chip(東レ株式会社)を用い、同社が定めるプロトコールに基づいてストリンジェントな条件で、total RNA中のmiRNAとDNAチップ上のプローブとのハイブリダイゼーション及びハイブリダイゼーション後の洗浄を行った。DNAチップを3D-Gene(登録商標)スキャナー(東レ株式会社)を用いてスキャンし、画像を取得して3D-Gene(登録商標)Extraction(東レ株式会社)にて蛍光強度を数値化した。数値化された蛍光強度を、底が2の対数値に変換して遺伝子発現量とし、ブランク値の減算を行い、欠損値は各DNAチップにおける遺伝子発現量の最小値の対数値から0.1を減算した値で置換した。その結果、前立腺がん患者52人の血清及び健常体男性141人の血清に対する、網羅的なmiRNAの遺伝子発現量を得た。数値化されたmiRNAの遺伝子発現量を用いた計算及び統計解析は、R言語3.0.2(R Development Core Team (2013). R: A language and environment for statistical computing. R Foundation for Statistical Computing、 URL http://www.R-project.org/)及びMASSパッケージ7.3-30(Venables、 W. N. & Ripley、 B. D. (2002) Modern Applied Statistics with S. Fourth Edition. Springer、New York. ISBN 0-387-95457-0)を用いて実施した。
<前立腺がん以外のがんの検体の採取>
インフォームドコンセントを得た他の臓器にがんが認められていない乳がん患者63人からベノジェクトII真空採血管VP-AS109K60(テルモ株式会社)を用いてそれぞれ血清を採取し、参考例1の前立腺がん患者35人と健常体男性99人と合わせて学習検体群とした。同様に、インフォームドコンセントを得た他の臓器にがんが認められていない乳がん患者30人からベノジェクトII真空採血管VP-AS109K60(テルモ株式会社)を用いてそれぞれ血清を採取し、参考例1の前立腺以外の臓器にがんが認められていない前立腺がん患者17人、健常体男性51人と合わせてテスト検体群とした。以降の操作は参考例1と同様に行った。
<学習検体群の検体を用いた遺伝子マーカーの選定とテスト検体群の検体を用いた単独の遺伝子マーカーの前立腺がん判別性能の評価方法>
本実施例では、学習検体群から前立腺がんを健常体と判別するための遺伝子マーカーを選定し、学習検体群とは独立したテスト検体群の検体において検討した。
<テスト検体群検体を用いた複数の遺伝子マーカーの組み合わせによる前立腺がん判別性能の評価方法>
本実施例では、実施例1で選定された遺伝子マーカーを組み合わせて前立腺がん判別性能を評価する方法を検討した。
<全検体を用いた場合の遺伝子マーカーの選定と獲られた遺伝子マーカーの前立腺がん判別性能の評価方法>
本実施例では、上記実施例1及び2で用いた学習検体群及びテスト検体群の検体を統合し全検体を用いて、遺伝子マーカーの選定及びその前立腺がん判別性能評価を行った。
<テスト検体群検体を用いた複数の遺伝子マーカーの組み合わせによる前立腺がん特異的な判別性能の評価方法>
本実施例では、参考例2で得た学習検体群を用い、実施例1に記載の方法と同様の方法で、前立腺がん患者と、健常体及び乳がん患者からなる対照群との血清中のmiRNAの遺伝子発現量の比較を行い、統計的有意性がある診断用遺伝子を選択した。その結果、新たに選択された、配列番号580~611で表される塩基配列からなるポリヌクレオチドを、実施例1で選定された遺伝子マーカーに更に組み合わせて前立腺がん特異的な判別性能を評価する方法を検討した。
本明細書で引用した全ての刊行物、特許及び特許出願をそのまま参考として本明細書に組み入れるものとする。
Claims (25)
- 前立腺がんマーカーである、miR-4443、miR-1908-5p、miR-4257、miR-3197、miR-3188、miR-4649-5p、miR-1343-3p、miR-6861-5p、miR-1343-5p、miR-642b-3p、miR-6741-5p、miR-4745-5p、miR-6826-5p、miR-3663-3p、miR-3131、miR-92a-2-5p、miR-4258、miR-4448、miR-6125、miR-6880-5p、miR-6132、miR-4467、miR-6749-5p、miR-2392、miR-1273g-3p、miR-4746-3p、miR-1914-3p、miR-7845-5p、miR-6726-5p、miR-128-2-5p、miR-4651、miR-6765-3p、miR-3185、miR-4792、miR-6887-5p、miR-5572、miR-3619-3p、miR-6780b-5p、miR-4707-5p、miR-8063、miR-4454、miR-4525、miR-7975、miR-744-5p、miR-3135b、miR-4648、miR-6816-5p、miR-4741、miR-7150、miR-6791-5p、miR-1247-3p、miR-7977、miR-4497、miR-6090、miR-6781-5p、miR-6870-5p、miR-6729-5p、miR-4530、miR-7847-3p、miR-6825-5p、miR-4674、miR-3917、miR-4707-3p、miR-6885-5p、miR-6722-3p、miR-4516、miR-6757-5p、miR-6840-3p、miR-5195-3p、miR-6756-5p、miR-6800-5p、miR-6727-5p、miR-6126、miR-6872-3p、miR-4446-3p、miR-1268a、miR-1908-3p、miR-3679-5p、miR-4534、miR-4675、miR-7108-5p、miR-6799-5p、miR-4695-5p、miR-3178、miR-5090、miR-3180、miR-1237-5p、miR-4758-5p、miR-3184-5p、miR-4286、miR-6784-5p、miR-6768-5p、miR-6785-5p、miR-4706、miR-711、miR-1260a、miR-6746-5p、miR-6089、miR-6821-5p、miR-4667-5p、miR-8069、miR-4726-5p、miR-6124、miR-4532、miR-4486、miR-4728-5p、miR-4508、miR-128-1-5p、miR-4513、miR-6795-5p、miR-4689、miR-6763-5p、miR-8072、miR-6765-5p、miR-4419b、miR-7641、miR-3928-3p、miR-1227-5p、miR-4492、miR-296-3p、miR-6769a-5p、miR-6889-5p、miR-4632-5p、miR-4505、miR-3154、miR-3648、miR-4442、miR-3141、miR-7113-3p、miR-6819-5p、miR-3195、miR-1199-5p、miR-6738-5p、miR-4656、miR-6820-5p、miR-204-3p、miR-642a-3p、miR-762、miR-1202、miR-3162-5p、miR-3196、miR-3622a-5p、miR-3665、miR-3940-5p、miR-4294、miR-4466、miR-4476、miR-4723-5p、miR-4725-3p、miR-4730、miR-4739、miR-4787-5p、miR-5787、miR-6085、miR-6717-5p、miR-6724-5p、miR-6777-5p、miR-6778-5p、miR-6787-5p、miR-6789-5p、miR-6845-5p及びmiR-6893-5pからなる群から選択される少なくとも1つ以上のポリヌクレオチドと特異的に結合可能な核酸を含む、前立腺がんの検出用キット。
- miR-4443がhsa-miR-4443であり、miR-1908-5pがhsa-miR-1908-5pであり、miR-4257がhsa-miR-4257であり、miR-3197がhsa-miR-3197であり、miR-3188がhsa-miR-3188であり、miR-4649-5pがhsa-miR-4649-5pであり、miR-1343-3pがhsa-miR-1343-3pであり、miR-6861-5pがhsa-miR-6861-5pであり、miR-1343-5pがhsa-miR-1343-5pであり、miR-642b-3pがhsa-miR-642b-3pであり、miR-6741-5pがhsa-miR-6741-5pであり、miR-4745-5pがhsa-miR-4745-5pであり、miR-6826-5pがhsa-miR-6826-5pであり、miR-3663-3pがhsa-miR-3663-3pであり、miR-3131がhsa-miR-3131であり、miR-92a-2-5pがhsa-miR-92a-2-5pであり、miR-4258がhsa-miR-4258であり、miR-4448がhsa-miR-4448であり、miR-6125がhsa-miR-6125であり、miR-6880-5pがhsa-miR-6880-5pであり、miR-6132がhsa-miR-6132であり、miR-4467がhsa-miR-4467であり、miR-6749-5pがhsa-miR-6749-5pであり、miR-2392がhsa-miR-2392であり、miR-1273g-3pがhsa-miR-1273g-3pであり、miR-4746-3pがhsa-miR-4746-3pであり、miR-1914-3pがhsa-miR-1914-3pであり、miR-7845-5pがhsa-miR-7845-5pであり、miR-6726-5pがhsa-miR-6726-5pであり、miR-128-2-5pがhsa-miR-128-2-5pであり、miR-4651がhsa-miR-4651であり、miR-6765-3pがhsa-miR-6765-3pであり、miR-3185がhsa-miR-3185であり、miR-4792がhsa-miR-4792であり、miR-6887-5pがhsa-miR-6887-5pであり、miR-5572がhsa-miR-5572であり、miR-3619-3pがhsa-miR-3619-3pであり、miR-6780b-5pがhsa-miR-6780b-5pであり、miR-4707-5pがhsa-miR-4707-5pであり、miR-8063がhsa-miR-8063であり、miR-4454がhsa-miR-4454であり、miR-4525がhsa-miR-4525であり、miR-7975がhsa-miR-7975であり、miR-744-5pがhsa-miR-744-5pであり、miR-3135bがhsa-miR-3135bであり、miR-4648がhsa-miR-4648であり、miR-6816-5pがhsa-miR-6816-5pであり、miR-4741がhsa-miR-4741であり、miR-7150がhsa-miR-7150であり、miR-6791-5pがhsa-miR-6791-5pであり、miR-1247-3pがhsa-miR-1247-3pであり、miR-7977がhsa-miR-7977であり、miR-4497がhsa-miR-4497であり、miR-6090がhsa-miR-6090であり、miR-6781-5pがhsa-miR-6781-5pであり、miR-6870-5pがhsa-miR-6870-5pであり、miR-6729-5pがhsa-miR-6729-5pであり、miR-4530がhsa-miR-4530であり、miR-7847-3pがhsa-miR-7847-3pであり、miR-6825-5pがhsa-miR-6825-5pであり、miR-4674がhsa-miR-4674であり、miR-3917がhsa-miR-3917であり、miR-4707-3pがhsa-miR-4707-3pであり、miR-6885-5pがhsa-miR-6885-5pであり、miR-6722-3pがhsa-miR-6722-3pであり、miR-4516がhsa-miR-4516であり、miR-6757-5pがhsa-miR-6757-5pであり、miR-6840-3pがhsa-miR-6840-3pであり、miR-5195-3pがhsa-miR-5195-3pであり、miR-6756-5pがhsa-miR-6756-5pであり、miR-6800-5pがhsa-miR-6800-5pであり、miR-6727-5pがhsa-miR-6727-5pであり、miR-6126がhsa-miR-6126であり、miR-6872-3pがhsa-miR-6872-3pであり、miR-4446-3pがhsa-miR-4446-3pであり、miR-1268aがhsa-miR-1268aであり、miR-1908-3pがhsa-miR-1908-3pであり、miR-3679-5pがhsa-miR-3679-5pであり、miR-4534がhsa-miR-4534であり、miR-4675がhsa-miR-4675であり、miR-7108-5pがhsa-miR-7108-5pであり、miR-6799-5pがhsa-miR-6799-5pであり、miR-4695-5pがhsa-miR-4695-5pであり、miR-3178がhsa-miR-3178であり、miR-5090がhsa-miR-5090であり、miR-3180がhsa-miR-3180であり、miR-1237-5pがhsa-miR-1237-5pであり、miR-4758-5pがhsa-miR-4758-5pであり、miR-3184-5pがhsa-miR-3184-5pであり、miR-4286がhsa-miR-4286であり、miR-6784-5pがhsa-miR-6784-5pであり、miR-6768-5pがhsa-miR-6768-5pであり、miR-6785-5pがhsa-miR-6785-5pであり、miR-4706がhsa-miR-4706であり、miR-711がhsa-miR-711であり、miR-1260aがhsa-miR-1260aであり、miR-6746-5pがhsa-miR-6746-5pであり、miR-6089がhsa-miR-6089であり、miR-6821-5pがhsa-miR-6821-5pであり、miR-4667-5pがhsa-miR-4667-5pであり、miR-8069がhsa-miR-8069であり、miR-4726-5pがhsa-miR-4726-5pであり、miR-6124がhsa-miR-6124であり、miR-4532がhsa-miR-4532であり、miR-4486がhsa-miR-4486であり、miR-4728-5pがhsa-miR-4728-5pであり、miR-4508がhsa-miR-4508であり、miR-128-1-5pがhsa-miR-128-1-5pであり、miR-4513がhsa-miR-4513であり、miR-6795-5pがhsa-miR-6795-5pであり、miR-4689がhsa-miR-4689であり、miR-6763-5pがhsa-miR-6763-5pであり、miR-8072がhsa-miR-8072であり、miR-6765-5pがhsa-miR-6765-5pであり、miR-4419bがhsa-miR-4419bであり、miR-7641がhsa-miR-7641であり、miR-3928-3pがhsa-miR-3928-3pであり、miR-1227-5pがhsa-miR-1227-5pであり、miR-4492がhsa-miR-4492であり、miR-296-3pがhsa-miR-296-3pであり、miR-6769a-5pがhsa-miR-6769a-5pであり、miR-6889-5pがhsa-miR-6889-5pであり、miR-4632-5pがhsa-miR-4632-5pであり、miR-4505がhsa-miR-4505であり、miR-3154がhsa-miR-3154であり、miR-3648がhsa-miR-3648であり、miR-4442がhsa-miR-4442であり、miR-3141がhsa-miR-3141であり、miR-7113-3pがhsa-miR-7113-3pであり、miR-6819-5pがhsa-miR-6819-5pであり、miR-3195がhsa-miR-3195であり、miR-1199-5pがhsa-miR-1199-5pであり、miR-6738-5pがhsa-miR-6738-5pであり、miR-4656がhsa-miR-4656であり、miR-6820-5pがhsa-miR-6820-5pであり、miR-204-3pがhsa-miR-204-3pであり、miR-642a-3pがhsa-miR-642a-3pであり、miR-762がhsa-miR-762であり、miR-1202がhsa-miR-1202であり、miR-3162-5pがhsa-miR-3162-5pであり、miR-3196がhsa-miR-3196であり、miR-3622a-5pがhsa-miR-3622a-5pであり、miR-3665がhsa-miR-3665であり、miR-3940-5pがhsa-miR-3940-5pであり、miR-4294がhsa-miR-4294であり、miR-4466がhsa-miR-4466であり、miR-4476がhsa-miR-4476であり、miR-4723-5pがhsa-miR-4723-5pであり、miR-4725-3pがhsa-miR-4725-3pであり、miR-4730がhsa-miR-4730であり、miR-4739がhsa-miR-4739であり、miR-4787-5pがhsa-miR-4787-5pであり、miR-5787がhsa-miR-5787であり、miR-6085がhsa-miR-6085であり、miR-6717-5pがhsa-miR-6717-5pであり、miR-6724-5pがhsa-miR-6724-5pであり、miR-6777-5pがhsa-miR-6777-5pであり、miR-6778-5pがhsa-miR-6778-5pであり、miR-6787-5pがhsa-miR-6787-5pであり、miR-6789-5pがhsa-miR-6789-5pであり、miR-6845-5pがhsa-miR-6845-5pであり、及び、miR-6893-5pがhsa-miR-6893-5pである、請求項1に記載のキット。
- 前記核酸が、下記の(a)~(e)に示すポリヌクレオチド:
(a)配列番号1~135、580~606のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(b)配列番号1~135、580~606のいずれかで表される塩基配列を含むポリヌクレオチド、
(c)配列番号1~135、580~606のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(d)配列番号1~135、580~606のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列を含むポリヌクレオチド、及び
(e)前記(a)~(d)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択されるポリヌクレオチドである、請求項1又は2に記載のキット。 - 前記キットが、別の前立腺がんマーカーである、miR-615-5p、miR-486-3p、miR-1225-3p、miR-760、miR-187-5p、miR-1203、miR-7110-5p、miR-371a-5p、miR-939-5p、miR-575、miR-92b-5p、miR-887-3p、miR-920、miR-1915-5p、miR-1231、miR-663b、miR-1225-5p、miR-16-5p、miR-423-5p、miR-451a、miR-564及びmiR-671-5pからなる群から選択される少なくとも1つ以上のポリヌクレオチドと特異的に結合可能な核酸をさらに含む、請求項1~3のいずれかに記載のキット。
- miR-615-5pがhsa-miR-615-5pであり、miR-486-3pがhsa-miR-486-3pであり、miR-1225-3pがhsa-miR-1225-3pであり、miR-760がhsa-miR-760であり、miR-187-5pがhsa-miR-187-5pであり、miR-1203がhsa-miR-1203であり、miR-7110-5pがhsa-miR-7110-5pであり、miR-371a-5pがhsa-miR-371a-5pであり、miR-939-5pがhsa-miR-939-5pであり、miR-575がhsa-miR-575であり、miR-92b-5pがhsa-miR-92b-5pであり、miR-887-3pがhsa-miR-887-3pであり、miR-920がhsa-miR-920であり、miR-1915-5pがhsa-miR-1915-5pであり、miR-1231がhsa-miR-1231であり、miR-663bがhsa-miR-663bであり、miR-1225-5pがhsa-miR-1225-5pであり、miR-16-5pがhsa-miR-16-5pであり、miR-423-5pがhsa-miR-423-5pであり、miR-451aがhsa-miR-451aであり、miR-564がhsa-miR-564であり、及び、miR-671-5pがhsa-miR-671-5pである、請求項4に記載のキット。
- 前記核酸が、下記の(f)~(j)に示すポリヌクレオチド:
(f)配列番号136~152、607~611のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(g)配列番号136~152、607~611のいずれかで表される塩基配列を含むポリヌクレオチド、
(h)配列番号136~152、607~611のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(i)配列番号136~152、607~611のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列を含むポリヌクレオチド、及び
(j)前記(f)~(i)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択されるポリヌクレオチドである、請求項4又は5に記載のキット。 - 前記キットが、別の前立腺がんマーカーである、miR-4763-3p、miR-3656、miR-4488、miR-125a-3p、miR-1469、miR-1228-5p、miR-6798-5p、miR-1268b、miR-6732-5p、miR-1915-3p、miR-4433b-3p、miR-1207-5p、miR-4433-3p、miR-6879-5p、miR-4417、miR-30c-1-3p、miR-4638-5p、miR-6088、miR-4270、miR-6782-5p、miR-665、miR-486-5p、miR-4655-5p、miR-1275、miR-6806-5p、miR-614、miR-3937、miR-6752-5p、miR-6771-5p、miR-4450、miR-211-3p、miR-663a、miR-6842-5p、miR-7114-5p及びmiR-6779-5pからなる群から選択される少なくとも1つ以上のポリヌクレオチドと特異的に結合可能な核酸をさらに含む、請求項1~6のいずれかに記載のキット。
- miR-4763-3pがhsa-miR-4763-3pであり、miR-3656がhsa-miR-3656であり、miR-4488がhsa-miR-4488であり、miR-125a-3pがhsa-miR-125a-3pであり、miR-1469がhsa-miR-1469であり、miR-1228-5pがhsa-miR-1228-5pであり、miR-6798-5pがhsa-miR-6798-5pであり、miR-1268bがhsa-miR-1268bであり、miR-6732-5pがhsa-miR-6732-5pであり、miR-1915-3pがhsa-miR-1915-3pであり、miR-4433b-3pがhsa-miR-4433b-3pであり、miR-1207-5pがhsa-miR-1207-5pであり、miR-4433-3pがhsa-miR-4433-3pであり、miR-6879-5pがhsa-miR-6879-5pであり、miR-4417がhsa-miR-4417であり、miR-30c-1-3pがhsa-miR-30c-1-3pであり、miR-4638-5pがhsa-miR-4638-5pであり、miR-6088がhsa-miR-6088であり、miR-4270がhsa-miR-4270であり、miR-6782-5pがhsa-miR-6782-5pであり、miR-665がhsa-miR-665であり、miR-486-5pがhsa-miR-486-5pであり、miR-4655-5pがhsa-miR-4655-5pであり、miR-1275がhsa-miR-1275であり、miR-6806-5pがhsa-miR-6806-5pであり、miR-614がhsa-miR-614であり、miR-3937がhsa-miR-3937であり、miR-6752-5pがhsa-miR-6752-5pであり、miR-6771-5pがhsa-miR-6771-5pであり、miR-4450がhsa-miR-4450であり、miR-211-3pがhsa-miR-211-3pであり、miR-663aがhsa-miR-663aであり、miR-6842-5pがhsa-miR-6842-5pであり、miR-7114-5pがhsa-miR-7114-5pであり、及び、miR-6779-5pがhsa-miR-6779-5pである、請求項7に記載のキット。
- 前記核酸が、下記の(k)~(o)に示すポリヌクレオチド:
(k)配列番号153~187のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(l)配列番号153~187のいずれかで表される塩基配列を含むポリヌクレオチド、
(m)配列番号153~187のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(n)配列番号153~187のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列を含むポリヌクレオチド、及び
(o)前記(k)~(n)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択されるポリヌクレオチドである、請求項7又は8に記載のキット。 - 前記キットが、請求項1又は2に記載のすべての前立腺がんマーカーから選択される少なくとも2つ以上のポリヌクレオチドのそれぞれと特異的に結合可能な少なくとも2つ以上の核酸を含む、請求項1~9のいずれかに記載のキット。
- 前立腺がんマーカーである、miR-4443、miR-1908-5p、miR-4257、miR-3197、miR-3188、miR-4649-5p、miR-1343-3p、miR-6861-5p、miR-1343-5p、miR-642b-3p、miR-6741-5p、miR-4745-5p、miR-6826-5p、miR-3663-3p、miR-3131、miR-92a-2-5p、miR-4258、miR-4448、miR-6125、miR-6880-5p、miR-6132、miR-4467、miR-6749-5p、miR-2392、miR-1273g-3p、miR-4746-3p、miR-1914-3p、miR-7845-5p、miR-6726-5p、miR-128-2-5p、miR-4651、miR-6765-3p、miR-3185、miR-4792、miR-6887-5p、miR-5572、miR-3619-3p、miR-6780b-5p、miR-4707-5p、miR-8063、miR-4454、miR-4525、miR-7975、miR-744-5p、miR-3135b、miR-4648、miR-6816-5p、miR-4741、miR-7150、miR-6791-5p、miR-1247-3p、miR-7977、miR-4497、miR-6090、miR-6781-5p、miR-6870-5p、miR-6729-5p、miR-4530、miR-7847-3p、miR-6825-5p、miR-4674、miR-3917、miR-4707-3p、miR-6885-5p、miR-6722-3p、miR-4516、miR-6757-5p、miR-6840-3p、miR-5195-3p、miR-6756-5p、miR-6800-5p、miR-6727-5p、miR-6126、miR-6872-3p、miR-4446-3p、miR-1268a、miR-1908-3p、miR-3679-5p、miR-4534、miR-4675、miR-7108-5p、miR-6799-5p、miR-4695-5p、miR-3178、miR-5090、miR-3180、miR-1237-5p、miR-4758-5p、miR-3184-5p、miR-4286、miR-6784-5p、miR-6768-5p、miR-6785-5p、miR-4706、miR-711、miR-1260a、miR-6746-5p、miR-6089、miR-6821-5p、miR-4667-5p、miR-8069、miR-4726-5p、miR-6124、miR-4532、miR-4486、miR-4728-5p、miR-4508、miR-128-1-5p、miR-4513、miR-6795-5p、miR-4689、miR-6763-5p、miR-8072、miR-6765-5p、miR-4419b、miR-7641、miR-3928-3p、miR-1227-5p、miR-4492、miR-296-3p、miR-6769a-5p、miR-6889-5p、miR-4632-5p、miR-4505、miR-3154、miR-3648、miR-4442、miR-3141、miR-7113-3p、miR-6819-5p、miR-3195、miR-1199-5p、miR-6738-5p、miR-4656、miR-6820-5p、miR-204-3p、miR-642a-3p、miR-762、miR-1202、miR-3162-5p、miR-3196、miR-3622a-5p、miR-3665、miR-3940-5p、miR-4294、miR-4466、miR-4476、miR-4723-5p、miR-4725-3p、miR-4730、miR-4739、miR-4787-5p、miR-5787、miR-6085、miR-6717-5p、miR-6724-5p、miR-6777-5p、miR-6778-5p、miR-6787-5p、miR-6789-5p、miR-6845-5p及びmiR-6893-5pから選択される少なくとも1つ以上のポリヌクレオチドと特異的に結合可能な核酸を含む、前立腺がんの検出用デバイス。
- miR-4443がhsa-miR-4443であり、miR-1908-5pがhsa-miR-1908-5pであり、miR-4257がhsa-miR-4257であり、miR-3197がhsa-miR-3197であり、miR-3188がhsa-miR-3188であり、miR-4649-5pがhsa-miR-4649-5pであり、miR-1343-3pがhsa-miR-1343-3pであり、miR-6861-5pがhsa-miR-6861-5pであり、miR-1343-5pがhsa-miR-1343-5pであり、miR-642b-3pがhsa-miR-642b-3pであり、miR-6741-5pがhsa-miR-6741-5pであり、miR-4745-5pがhsa-miR-4745-5pであり、miR-6826-5pがhsa-miR-6826-5pであり、miR-3663-3pがhsa-miR-3663-3pであり、miR-3131がhsa-miR-3131であり、miR-92a-2-5pがhsa-miR-92a-2-5pであり、miR-4258がhsa-miR-4258であり、miR-4448がhsa-miR-4448であり、miR-6125がhsa-miR-6125であり、miR-6880-5pがhsa-miR-6880-5pであり、miR-6132がhsa-miR-6132であり、miR-4467がhsa-miR-4467であり、miR-6749-5pがhsa-miR-6749-5pであり、miR-2392がhsa-miR-2392であり、miR-1273g-3pがhsa-miR-1273g-3pであり、miR-4746-3pがhsa-miR-4746-3pであり、miR-1914-3pがhsa-miR-1914-3pであり、miR-7845-5pがhsa-miR-7845-5pであり、miR-6726-5pがhsa-miR-6726-5pであり、miR-128-2-5pがhsa-miR-128-2-5pであり、miR-4651がhsa-miR-4651であり、miR-6765-3pがhsa-miR-6765-3pであり、miR-3185がhsa-miR-3185であり、miR-4792がhsa-miR-4792であり、miR-6887-5pがhsa-miR-6887-5pであり、miR-5572がhsa-miR-5572であり、miR-3619-3pがhsa-miR-3619-3pであり、miR-6780b-5pがhsa-miR-6780b-5pであり、miR-4707-5pがhsa-miR-4707-5pであり、miR-8063がhsa-miR-8063であり、miR-4454がhsa-miR-4454であり、miR-4525がhsa-miR-4525であり、miR-7975がhsa-miR-7975であり、miR-744-5pがhsa-miR-744-5pであり、miR-3135bがhsa-miR-3135bであり、miR-4648がhsa-miR-4648であり、miR-6816-5pがhsa-miR-6816-5pであり、miR-4741がhsa-miR-4741であり、miR-7150がhsa-miR-7150であり、miR-6791-5pがhsa-miR-6791-5pであり、miR-1247-3pがhsa-miR-1247-3pであり、miR-7977がhsa-miR-7977であり、miR-4497がhsa-miR-4497であり、miR-6090がhsa-miR-6090であり、miR-6781-5pがhsa-miR-6781-5pであり、miR-6870-5pがhsa-miR-6870-5pであり、miR-6729-5pがhsa-miR-6729-5pであり、miR-4530がhsa-miR-4530であり、miR-7847-3pがhsa-miR-7847-3pであり、miR-6825-5pがhsa-miR-6825-5pであり、miR-4674がhsa-miR-4674であり、miR-3917がhsa-miR-3917であり、miR-4707-3pがhsa-miR-4707-3pであり、miR-6885-5pがhsa-miR-6885-5pであり、miR-6722-3pがhsa-miR-6722-3pであり、miR-4516がhsa-miR-4516であり、miR-6757-5pがhsa-miR-6757-5pであり、miR-6840-3pがhsa-miR-6840-3pであり、miR-5195-3pがhsa-miR-5195-3pであり、miR-6756-5pがhsa-miR-6756-5pであり、miR-6800-5pがhsa-miR-6800-5pであり、miR-6727-5pがhsa-miR-6727-5pであり、miR-6126がhsa-miR-6126であり、miR-6872-3pがhsa-miR-6872-3pであり、miR-4446-3pがhsa-miR-4446-3pであり、miR-1268aがhsa-miR-1268aであり、miR-1908-3pがhsa-miR-1908-3pであり、miR-3679-5pがhsa-miR-3679-5pであり、miR-4534がhsa-miR-4534であり、miR-4675がhsa-miR-4675であり、miR-7108-5pがhsa-miR-7108-5pであり、miR-6799-5pがhsa-miR-6799-5pであり、miR-4695-5pがhsa-miR-4695-5pであり、miR-3178がhsa-miR-3178であり、miR-5090がhsa-miR-5090であり、miR-3180がhsa-miR-3180であり、miR-1237-5pがhsa-miR-1237-5pであり、miR-4758-5pがhsa-miR-4758-5pであり、miR-3184-5pがhsa-miR-3184-5pであり、miR-4286がhsa-miR-4286であり、miR-6784-5pがhsa-miR-6784-5pであり、miR-6768-5pがhsa-miR-6768-5pであり、miR-6785-5pがhsa-miR-6785-5pであり、miR-4706がhsa-miR-4706であり、miR-711がhsa-miR-711であり、miR-1260aがhsa-miR-1260aであり、miR-6746-5pがhsa-miR-6746-5pであり、miR-6089がhsa-miR-6089であり、miR-6821-5pがhsa-miR-6821-5pであり、miR-4667-5pがhsa-miR-4667-5pであり、miR-8069がhsa-miR-8069であり、miR-4726-5pがhsa-miR-4726-5pであり、miR-6124がhsa-miR-6124であり、miR-4532がhsa-miR-4532であり、miR-4486がhsa-miR-4486であり、miR-4728-5pがhsa-miR-4728-5pであり、miR-4508がhsa-miR-4508であり、miR-128-1-5pがhsa-miR-128-1-5pであり、miR-4513がhsa-miR-4513であり、miR-6795-5pがhsa-miR-6795-5pであり、miR-4689がhsa-miR-4689であり、miR-6763-5pがhsa-miR-6763-5pであり、miR-8072がhsa-miR-8072であり、miR-6765-5pがhsa-miR-6765-5pであり、miR-4419bがhsa-miR-4419bであり、miR-7641がhsa-miR-7641であり、miR-3928-3pがhsa-miR-3928-3pであり、miR-1227-5pがhsa-miR-1227-5pであり、miR-4492がhsa-miR-4492であり、miR-296-3pがhsa-miR-296-3pであり、miR-6769a-5pがhsa-miR-6769a-5pであり、miR-6889-5pがhsa-miR-6889-5pであり、miR-4632-5pがhsa-miR-4632-5pであり、miR-4505がhsa-miR-4505であり、miR-3154がhsa-miR-3154であり、miR-3648がhsa-miR-3648であり、miR-4442がhsa-miR-4442であり、miR-3141がhsa-miR-3141であり、miR-7113-3pがhsa-miR-7113-3pであり、miR-6819-5pがhsa-miR-6819-5pであり、miR-3195がhsa-miR-3195であり、miR-1199-5pがhsa-miR-1199-5pであり、miR-6738-5pがhsa-miR-6738-5pであり、miR-4656がhsa-miR-4656であり、miR-6820-5pがhsa-miR-6820-5pであり、miR-204-3pがhsa-miR-204-3pであり、miR-642a-3pがhsa-miR-642a-3pであり、miR-762がhsa-miR-762であり、miR-1202がhsa-miR-1202であり、miR-3162-5pがhsa-miR-3162-5pであり、miR-3196がhsa-miR-3196であり、miR-3622a-5pがhsa-miR-3622a-5pであり、miR-3665がhsa-miR-3665であり、miR-3940-5pがhsa-miR-3940-5pであり、miR-4294がhsa-miR-4294であり、miR-4466がhsa-miR-4466であり、miR-4476がhsa-miR-4476であり、miR-4723-5pがhsa-miR-4723-5pであり、miR-4725-3pがhsa-miR-4725-3pであり、miR-4730がhsa-miR-4730であり、miR-4739がhsa-miR-4739であり、miR-4787-5pがhsa-miR-4787-5pであり、miR-5787がhsa-miR-5787であり、miR-6085がhsa-miR-6085であり、miR-6717-5pがhsa-miR-6717-5pであり、miR-6724-5pがhsa-miR-6724-5pであり、miR-6777-5pがhsa-miR-6777-5pであり、miR-6778-5pがhsa-miR-6778-5pであり、miR-6787-5pがhsa-miR-6787-5pであり、miR-6789-5pがhsa-miR-6789-5pであり、miR-6845-5pがhsa-miR-6845-5pであり、及び、miR-6893-5pがhsa-miR-6893-5pである、請求項11に記載のデバイス。
- 前記核酸が、下記の(a)~(e)に示すポリヌクレオチド:
(a)配列番号1~135、580~606のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(b)配列番号1~135、580~606のいずれかで表される塩基配列を含むポリヌクレオチド、
(c)配列番号1~135、580~606のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(d)配列番号1~135、580~606のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列を含むポリヌクレオチド、及び
(e)前記(a)~(d)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択されるポリヌクレオチドである、請求項11又は12に記載のデバイス。 - 前記デバイスが、別の前立腺がんマーカーである、miR-615-5p、miR-486-3p、miR-1225-3p、miR-760、miR-187-5p、miR-1203、miR-7110-5p、miR-371a-5p、miR-939-5p、miR-575、miR-92b-5p、miR-887-3p、miR-920、miR-1915-5p、miR-1231、miR-663b、miR-1225-5p、miR-16-5p、miR-423-5p、miR-451a、miR-564及びmiR-671-5pからなる群から選択される少なくとも1つ以上のポリヌクレオチドと特異的に結合可能な核酸をさらに含む、請求項11~13のいずれかに記載のデバイス。
- miR-615-5pがhsa-miR-615-5pであり、miR-486-3pがhsa-miR-486-3pであり、miR-1225-3pがhsa-miR-1225-3pであり、miR-760がhsa-miR-760であり、miR-187-5pがhsa-miR-187-5pであり、miR-1203がhsa-miR-1203であり、miR-7110-5pがhsa-miR-7110-5pであり、miR-371a-5pがhsa-miR-371a-5pであり、miR-939-5pがhsa-miR-939-5pであり、miR-575がhsa-miR-575であり、miR-92b-5pがhsa-miR-92b-5pであり、miR-887-3pがhsa-miR-887-3pであり、miR-920がhsa-miR-920であり、miR-1915-5pがhsa-miR-1915-5pであり、miR-1231がhsa-miR-1231であり、miR-663bがhsa-miR-663bであり、miR-1225-5pがhsa-miR-1225-5pであり、miR-16-5pがhsa-miR-16-5pであり、miR-423-5pがhsa-miR-423-5pであり、miR-451aがhsa-miR-451aであり、miR-564がhsa-miR-564であり、及び、miR-671-5pがhsa-miR-671-5pである、請求項14に記載のデバイス。
- 前記核酸が、下記の(f)~(j)に示すポリヌクレオチド:
(f)配列番号136~152、607~611のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(g)配列番号136~152、607~611のいずれかで表される塩基配列を含むポリヌクレオチド、
(h)配列番号136~152、607~611のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(i)配列番号136~152、607~611のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列を含むポリヌクレオチド、及び
(j)前記(f)~(i)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択されるポリヌクレオチドである、請求項14又は15に記載のデバイス。 - 前記デバイスが、別の前立腺がんマーカーである、miR-4763-3p、miR-3656、miR-4488、miR-125a-3p、miR-1469、miR-1228-5p、miR-6798-5p、miR-1268b、miR-6732-5p、miR-1915-3p、miR-4433b-3p、miR-1207-5p、miR-4433-3p、miR-6879-5p、miR-4417、miR-30c-1-3p、miR-4638-5p、miR-6088、miR-4270、miR-6782-5p、miR-665、miR-486-5p、miR-4655-5p、miR-1275、miR-6806-5p、miR-614、miR-3937、miR-6752-5p、miR-6771-5p、miR-4450、miR-211-3p、miR-663a、miR-6842-5p、miR-7114-5p及びmiR-6779-5pからなる群から選択される少なくとも1つ以上のポリヌクレオチドと特異的に結合可能な核酸をさらに含む、請求項11~16のいずれかに記載のデバイス。
- miR-4763-3pがhsa-miR-4763-3pであり、miR-3656がhsa-miR-3656であり、miR-4488がhsa-miR-4488であり、miR-125a-3pがhsa-miR-125a-3pであり、miR-1469がhsa-miR-1469であり、miR-1228-5pがhsa-miR-1228-5pであり、miR-6798-5pがhsa-miR-6798-5pであり、miR-1268bがhsa-miR-1268bであり、miR-6732-5pがhsa-miR-6732-5pであり、miR-1915-3pがhsa-miR-1915-3pであり、miR-4433b-3pがhsa-miR-4433b-3pであり、miR-1207-5pがhsa-miR-1207-5pであり、miR-4433-3pがhsa-miR-4433-3pであり、miR-6879-5pがhsa-miR-6879-5pであり、miR-4417がhsa-miR-4417であり、miR-30c-1-3pがhsa-miR-30c-1-3pであり、miR-4638-5pがhsa-miR-4638-5pであり、miR-6088がhsa-miR-6088であり、miR-4270がhsa-miR-4270であり、miR-6782-5pがhsa-miR-6782-5pであり、miR-665がhsa-miR-665であり、miR-486-5pがhsa-miR-486-5pであり、miR-4655-5pがhsa-miR-4655-5pであり、miR-1275がhsa-miR-1275であり、miR-6806-5pがhsa-miR-6806-5pであり、miR-614がhsa-miR-614であり、miR-3937がhsa-miR-3937であり、miR-6752-5pがhsa-miR-6752-5pであり、miR-6771-5pがhsa-miR-6771-5pであり、miR-4450がhsa-miR-4450であり、miR-211-3pがhsa-miR-211-3pであり、miR-663aがhsa-miR-663aであり、miR-6842-5pがhsa-miR-6842-5pであり、miR-7114-5pがhsa-miR-7114-5pであり、及び、miR-6779-5pがhsa-miR-6779-5pである、請求項17に記載のデバイス。
- 前記核酸が、下記の(k)~(o)に示すポリヌクレオチド:
(k)配列番号153~187のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(l)配列番号153~187のいずれかで表される塩基配列を含むポリヌクレオチド、
(m)配列番号153~187のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(n)配列番号153~187のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列を含むポリヌクレオチド、及び
(o)前記(k)~(n)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択されるポリヌクレオチドである、請求項17又は18に記載のデバイス。 - 前記デバイスが、ハイブリダイゼーション技術による測定のためのデバイスである、請求項11~19のいずれかに記載のデバイス。
- 前記ハイブリダイゼーション技術が、核酸アレイ技術である、請求項20に記載のデバイス。
- 前記デバイスが、請求項11又は12に記載のすべての前立腺がんマーカーから選択される少なくとも2つ以上のポリヌクレオチドのそれぞれと特異的に結合可能な少なくとも2つ以上の核酸を含む、請求項11~21のいずれかに記載のデバイス。
- 請求項1~10のいずれか1項に記載のキット又は11~22のいずれか1項に記載のデバイスを用いて、被験体の検体における標的核酸の発現量を測定し、該測定された発現量と、同様に測定された健常体の対照発現量とを用いて、被験体が前立腺がんに罹患していること、又は前立腺がんに罹患していないことをin vitroで評価することを含む、前立腺がんの検出方法。
- 前記被験体が、ヒトである、請求項23に記載の方法。
- 前記検体が、血液、血清又は血漿である、請求項23又は24に記載の方法。
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CN201580030849.6A CN106459963B (zh) | 2014-06-12 | 2015-06-12 | 前列腺癌的检测试剂盒或装置以及检测方法 |
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