JP2017510244A5 - - Google Patents

Download PDF

Info

Publication number
JP2017510244A5
JP2017510244A5 JP2016539051A JP2016539051A JP2017510244A5 JP 2017510244 A5 JP2017510244 A5 JP 2017510244A5 JP 2016539051 A JP2016539051 A JP 2016539051A JP 2016539051 A JP2016539051 A JP 2016539051A JP 2017510244 A5 JP2017510244 A5 JP 2017510244A5
Authority
JP
Japan
Prior art keywords
sequence
less
polynucleotide
item
polynucleotides
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Granted
Application number
JP2016539051A
Other languages
English (en)
Japanese (ja)
Other versions
JP2017510244A (ja
JP6435334B2 (ja
Filing date
Publication date
Application filed filed Critical
Priority claimed from PCT/US2014/069848 external-priority patent/WO2015089333A1/en
Publication of JP2017510244A publication Critical patent/JP2017510244A/ja
Publication of JP2017510244A5 publication Critical patent/JP2017510244A5/ja
Application granted granted Critical
Publication of JP6435334B2 publication Critical patent/JP6435334B2/ja
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

JP2016539051A 2013-12-11 2014-12-11 稀な配列変異体を検出するための組成物および方法 Active JP6435334B2 (ja)

Applications Claiming Priority (7)

Application Number Priority Date Filing Date Title
US201361914907P 2013-12-11 2013-12-11
US61/914,907 2013-12-11
US201461987414P 2014-05-01 2014-05-01
US61/987,414 2014-05-01
US201462010975P 2014-06-11 2014-06-11
US62/010,975 2014-06-11
PCT/US2014/069848 WO2015089333A1 (en) 2013-12-11 2014-12-11 Compositions and methods for detecting rare sequence variants

Publications (3)

Publication Number Publication Date
JP2017510244A JP2017510244A (ja) 2017-04-13
JP2017510244A5 true JP2017510244A5 (enExample) 2018-01-25
JP6435334B2 JP6435334B2 (ja) 2018-12-05

Family

ID=53371852

Family Applications (1)

Application Number Title Priority Date Filing Date
JP2016539051A Active JP6435334B2 (ja) 2013-12-11 2014-12-11 稀な配列変異体を検出するための組成物および方法

Country Status (12)

Country Link
US (4) US10767222B2 (enExample)
EP (2) EP3495506B1 (enExample)
JP (1) JP6435334B2 (enExample)
KR (3) KR102379877B1 (enExample)
CN (2) CN104946737B (enExample)
AU (3) AU2014362227B2 (enExample)
CA (1) CA2933343A1 (enExample)
ES (2) ES2960338T3 (enExample)
IL (3) IL300974A (enExample)
MX (1) MX376900B (enExample)
SG (2) SG11201604737VA (enExample)
WO (1) WO2015089333A1 (enExample)

Families Citing this family (115)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7968287B2 (en) 2004-10-08 2011-06-28 Medical Research Council Harvard University In vitro evolution in microfluidic systems
EP2364774A3 (en) 2006-01-11 2014-06-04 Raindance Technologies, Inc. Microfluidic Devices And Methods Of Use In The Formation And Control Of Nanoreactors
US9562837B2 (en) 2006-05-11 2017-02-07 Raindance Technologies, Inc. Systems for handling microfludic droplets
EP2021113A2 (en) 2006-05-11 2009-02-11 Raindance Technologies, Inc. Microfluidic devices
US8772046B2 (en) 2007-02-06 2014-07-08 Brandeis University Manipulation of fluids and reactions in microfluidic systems
WO2008130623A1 (en) 2007-04-19 2008-10-30 Brandeis University Manipulation of fluids, fluid components and reactions in microfluidic systems
EP4047367A1 (en) 2008-07-18 2022-08-24 Bio-Rad Laboratories, Inc. Method for detecting target analytes with droplet libraries
US12038438B2 (en) 2008-07-18 2024-07-16 Bio-Rad Laboratories, Inc. Enzyme quantification
EP3216874A1 (en) 2008-09-05 2017-09-13 TOMA Biosciences, Inc. Methods for stratifying and annotating cancer drug treatment options
WO2010111231A1 (en) 2009-03-23 2010-09-30 Raindance Technologies, Inc. Manipulation of microfluidic droplets
EP3392349A1 (en) 2010-02-12 2018-10-24 Raindance Technologies, Inc. Digital analyte analysis
US9399797B2 (en) 2010-02-12 2016-07-26 Raindance Technologies, Inc. Digital analyte analysis
US9309556B2 (en) 2010-09-24 2016-04-12 The Board Of Trustees Of The Leland Stanford Junior University Direct capture, amplification and sequencing of target DNA using immobilized primers
WO2012045012A2 (en) 2010-09-30 2012-04-05 Raindance Technologies, Inc. Sandwich assays in droplets
US9364803B2 (en) 2011-02-11 2016-06-14 Raindance Technologies, Inc. Methods for forming mixed droplets
EP3736281A1 (en) 2011-02-18 2020-11-11 Bio-Rad Laboratories, Inc. Compositions and methods for molecular labeling
EP3709018A1 (en) 2011-06-02 2020-09-16 Bio-Rad Laboratories, Inc. Microfluidic apparatus for identifying components of a chemical reaction
US8658430B2 (en) 2011-07-20 2014-02-25 Raindance Technologies, Inc. Manipulating droplet size
US10068054B2 (en) 2013-01-17 2018-09-04 Edico Genome, Corp. Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform
US9792405B2 (en) 2013-01-17 2017-10-17 Edico Genome, Corp. Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform
WO2014113736A1 (en) 2013-01-17 2014-07-24 Edico Genome Corp. Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform
US9679104B2 (en) 2013-01-17 2017-06-13 Edico Genome, Corp. Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform
US10691775B2 (en) 2013-01-17 2020-06-23 Edico Genome, Corp. Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform
US10847251B2 (en) 2013-01-17 2020-11-24 Illumina, Inc. Genomic infrastructure for on-site or cloud-based DNA and RNA processing and analysis
US11901041B2 (en) 2013-10-04 2024-02-13 Bio-Rad Laboratories, Inc. Digital analysis of nucleic acid modification
US10851414B2 (en) 2013-10-18 2020-12-01 Good Start Genetics, Inc. Methods for determining carrier status
US11859246B2 (en) 2013-12-11 2024-01-02 Accuragen Holdings Limited Methods and compositions for enrichment of amplification products
US10767222B2 (en) * 2013-12-11 2020-09-08 Accuragen Holdings Limited Compositions and methods for detecting rare sequence variants
US11286519B2 (en) 2013-12-11 2022-03-29 Accuragen Holdings Limited Methods and compositions for enrichment of amplification products
US9944977B2 (en) * 2013-12-12 2018-04-17 Raindance Technologies, Inc. Distinguishing rare variations in a nucleic acid sequence from a sample
DK3102722T3 (da) 2014-02-04 2020-11-16 Jumpcode Genomics Inc Genom fraktionering
EP3567122B1 (en) * 2014-06-06 2021-02-17 Cornell University Method for identification and enumeration of nucleic acid sequence, expression, copy, or dna methylation changes, using combined nuclease, ligase, polymerase, and sequencing reactions
US20160048608A1 (en) 2014-08-15 2016-02-18 Good Start Genetics, Inc. Systems and methods for genetic analysis
US10429399B2 (en) 2014-09-24 2019-10-01 Good Start Genetics, Inc. Process control for increased robustness of genetic assays
EP3201350B1 (en) * 2014-09-30 2020-12-02 Global Life Sciences Solutions USA LLC Method for nucleic acid analysis directly from an unpurified biological sample
HK1255431A1 (zh) 2015-03-23 2019-08-16 Edico Genome Corporation 用於基因组可视化的方法和系统
CA2995422A1 (en) * 2015-08-12 2017-02-16 The Chinese University Of Hong Kong Single-molecule sequencing of plasma dna
GB2541904B (en) 2015-09-02 2020-09-02 Oxford Nanopore Tech Ltd Method of identifying sequence variants using concatenation
WO2017044609A1 (en) 2015-09-08 2017-03-16 Cold Spring Harbor Laboratory Genetic copy number determination using high throughput multiplex sequencing of smashed nucleotides
CN114807323A (zh) * 2015-10-09 2022-07-29 安可济控股有限公司 用于富集扩增产物的方法及组合物
MX382526B (es) 2015-10-23 2025-03-13 Array Biopharma Inc Compuestos de 2-piridazin-3(2h)-ona 2-aril sustituidas y 2-heteroaril sustituidas como inhibidores de las tirosina quinasas fgfr
CN108699505A (zh) * 2015-12-03 2018-10-23 安可济控股有限公司 用于形成连接产物的方法和组合物
US20170270245A1 (en) 2016-01-11 2017-09-21 Edico Genome, Corp. Bioinformatics systems, apparatuses, and methods for performing secondary and/or tertiary processing
US10068183B1 (en) 2017-02-23 2018-09-04 Edico Genome, Corp. Bioinformatics systems, apparatuses, and methods executed on a quantum processing platform
WO2017136720A1 (en) * 2016-02-05 2017-08-10 Good Start Genetics, Inc. Variant detection of sequencing assays
CN109312400A (zh) 2016-03-25 2019-02-05 凯锐思公司 合成核酸掺入物
WO2017190067A1 (en) 2016-04-28 2017-11-02 Impact Genomics, Inc. Methods of assessing and monitoring tumor load
US10354747B1 (en) * 2016-05-06 2019-07-16 Verily Life Sciences Llc Deep learning analysis pipeline for next generation sequencing
CA3024630A1 (en) * 2016-05-16 2017-11-23 Accuragen Holdings Limited Method of improved sequencing by strand identification
WO2017209891A1 (en) 2016-05-31 2017-12-07 Quantapore, Inc. Two-color nanopore sequencing
EP3469093A4 (en) 2016-06-10 2019-12-25 Saunders, Ann M. METHOD FOR DETECTING STRUCTURAL VARIANTS IN NEURODEGENERATIVE DISEASES
US11441169B2 (en) 2016-06-17 2022-09-13 Ludwig Institute For Cancer Research Ltd Methods of small-RNA transcriptome sequencing and applications thereof
CN109689888B (zh) * 2016-06-23 2022-10-25 安可济控股有限公司 无细胞核酸标准品及其用途
EP3478856B1 (en) 2016-06-30 2021-01-27 Grail, Inc. Differential tagging of rna for preparation of a cell-free dna/rna sequencing library
US10590451B2 (en) 2016-07-01 2020-03-17 Personal Genomics, Inc. Methods of constructing a circular template and detecting DNA molecules
WO2018015318A1 (en) 2016-07-18 2018-01-25 F. Hoffmann-La Roche Ag Method for generating single-stranded circular dna libraries for single molecule sequencing
WO2018031808A1 (en) * 2016-08-10 2018-02-15 Cirina, Inc. Methods of analyzing nucleic acid fragments
CN106282161B (zh) * 2016-08-12 2020-10-30 成都诺恩基因科技有限公司 特异捕获并重复复制低频率dna碱基变异的方法及应用
WO2018035170A1 (en) 2016-08-15 2018-02-22 Accuragen Holdings Limited Compositions and methods for detecting rare sequence variants
JP6810559B2 (ja) * 2016-09-09 2021-01-06 株式会社日立製作所 環状型一本鎖核酸、およびその調製方法と使用方法
EP4353830A3 (en) * 2016-09-15 2024-07-03 ArcherDX, LLC Methods of nucleic acid sample preparation for analysis of cell-free dna
US10704082B2 (en) 2016-09-15 2020-07-07 ArcherDX, Inc. Methods of nucleic acid sample preparation
EP3532635B1 (en) * 2016-10-31 2021-06-09 F. Hoffmann-La Roche AG Barcoded circular library construction for identification of chimeric products
CA3060018A1 (en) * 2017-04-17 2018-10-25 Thomas DUNWELL Methods, compositions, and kits for preparing nucleic acid libraries
EP3643787A4 (en) * 2017-06-20 2021-01-06 MGI Tech Co., Ltd. PCR PRIMER PAIR AND USE OF IT
EP3662480A4 (en) * 2017-08-04 2021-05-19 BillionToOne, Inc. MOLECULES ASSOCIATED WITH A TARGET FOR A CHARACTERIZATION ASSOCIATED WITH BIOLOGICAL TARGETS
SG11202001010UA (en) * 2017-08-07 2020-03-30 Univ Johns Hopkins Methods and materials for assessing and treating cancer
US10350307B2 (en) * 2017-09-18 2019-07-16 General Electric Company In vivo RNA or protein expression using double-stranded concatemeric DNA including phosphorothioated nucleotides
WO2019060722A2 (en) 2017-09-22 2019-03-28 X Gen Us Co. METHODS AND COMPOSITIONS FOR USE IN PREPARING POLYNUCLEOTIDES
JP7067896B2 (ja) * 2017-10-27 2022-05-16 シスメックス株式会社 品質評価方法、品質評価装置、プログラム、および記録媒体
WO2019086531A1 (en) * 2017-11-03 2019-05-09 F. Hoffmann-La Roche Ag Linear consensus sequencing
US11203782B2 (en) 2018-03-29 2021-12-21 Accuragen Holdings Limited Compositions and methods comprising asymmetric barcoding
WO2019191900A1 (en) 2018-04-03 2019-10-10 Burning Rock Biotech Compositions and methods for preparing nucleic acid libraries
CN113383083B (zh) 2018-04-27 2024-12-10 赛纳生物科技(北京)有限公司 用于制备多核苷酸的方法和组合物
CN112534063A (zh) 2018-05-22 2021-03-19 安序源有限公司 用于核酸测序的方法、系统和组合物
CN112601823A (zh) * 2018-06-12 2021-04-02 安可济控股有限公司 用于形成连接产物的方法和组合物
CN112654713A (zh) * 2018-07-05 2021-04-13 安可济控股有限公司 用于数字聚合酶链反应的组合物和方法
KR20210039406A (ko) * 2018-07-23 2021-04-09 더 차이니즈 유니버시티 오브 홍콩 세포-프리 dna 손상 분석 및 이의 임상적 적용
CN110872632A (zh) * 2018-08-30 2020-03-10 深圳华大生命科学研究院 咽颊炎链球菌的特异基因序列、其检测引物及其应用
EP3884065B1 (en) 2018-11-21 2024-08-14 Karius, Inc. Direct-to-library methods, systems, and compositions
WO2020131923A1 (en) * 2018-12-17 2020-06-25 uBiome, Inc. Automatic standardization pipeline for data analysis
CN113474337A (zh) 2018-12-19 2021-10-01 奥瑞生物药品公司 作为fgfr抑制剂用于治疗癌症的7-((3,5-二甲氧基苯基)氨基)喹喔啉衍生物
WO2020131627A1 (en) 2018-12-19 2020-06-25 Array Biopharma Inc. Substituted pyrazolo[1,5-a]pyridine compounds as inhibitors of fgfr tyrosine kinases
EP3927838A4 (en) * 2019-02-22 2022-11-16 AccuraGen Holdings Limited METHODS AND COMPOSITIONS FOR THE EARLY DETECTION OF CANCER
WO2020183280A1 (en) * 2019-03-14 2020-09-17 Genome Research Limited Method for sequencing a direct repeat
KR20220062302A (ko) * 2019-08-21 2022-05-16 라이프 테크놀로지스 코포레이션 시퀀싱을 위한 시스템 및 방법
WO2021046655A1 (en) * 2019-09-13 2021-03-18 University Health Network Detection of circulating tumor dna using double stranded hybrid capture
EP3798319A1 (en) 2019-09-30 2021-03-31 Diagenode S.A. An improved diagnostic and/or sequencing method and kit
EP3828283A1 (en) * 2019-11-28 2021-06-02 Diagenode S.A. An improved sequencing method and kit
CA3158739A1 (en) * 2019-11-19 2021-05-27 Xiao Bing Wang Method for identifying gene fusions by circle cdna amplification
WO2021125854A1 (ko) * 2019-12-20 2021-06-24 고려대학교 산학협력단 극소량의 희귀 단일 염기 변이체 검출용 프라이머 및 이를 이용하여 극소량의 희귀 단일 염기 변이체를 특이적이고 민감하게 검출하는 방법
US20230115945A1 (en) 2019-12-30 2023-04-13 Tyra Biosciences, Inc. Aminopyrimidine compounds
WO2021138391A1 (en) 2019-12-30 2021-07-08 Tyra Biosciences, Inc. Indazole compounds
CA3164884A1 (en) * 2020-01-17 2021-07-22 Meihua Gong Method for synchronously sequencing sense strand and antisense strand of dna
JP2023534882A (ja) * 2020-06-15 2023-08-14 ザ・ブロード・インスティテュート・インコーポレイテッド キメラアンプリコンアレイ配列決定
WO2022018055A1 (en) * 2020-07-20 2022-01-27 Westfälische Wilhelms-Universität Münster Circulation method to sequence immune repertoires of individual cells
EP4208470A4 (en) * 2020-10-22 2024-10-30 Singular Genomics Systems, Inc. NUCLEIC ACID CIRCULARIZATION AND AMPLIFICATION ON A SURFACE
WO2022147246A1 (en) 2020-12-30 2022-07-07 Tyra Biosciences, Inc. Indazole compounds as kinase inhibitors
US20230187023A1 (en) * 2021-02-03 2023-06-15 Tohoku University Genetic information analysis system and genetic information analysis method
EP4047100A1 (en) * 2021-02-18 2022-08-24 Miltenyi Biotec B.V. & Co. KG Ngs targeted dna panel using multiplex selective rca
WO2022182972A1 (en) 2021-02-26 2022-09-01 Tyra Biosciences, Inc. Aminopyrimidine compounds and methods of their use
TW202305130A (zh) * 2021-03-26 2023-02-01 美商旗艦先鋒創新有限責任(Vii)公司 原核系統中環狀多核糖核苷酸之產生
EP4314277A1 (en) * 2021-03-26 2024-02-07 Flagship Pioneering Innovations VII, LLC Compositions and methods for producing circular polyribonucleotides
WO2022204464A1 (en) * 2021-03-26 2022-09-29 Flagship Pioneering Innovations Vii, Llc Production of circular polyribonucleotides in a eukaryotic system
EP4314325A4 (en) * 2021-03-31 2025-03-05 Jumpcode Genomics, Inc. Methods for targeted nucleic acid sequencing
CN113549674B (zh) * 2021-04-22 2023-11-03 福建和瑞基因科技有限公司 一种检测样本中目标序列整合和突变的方法及其引物的设计方法和试剂盒
CN118318049A (zh) 2021-09-28 2024-07-09 安序源有限公司 用于处理核酸样品的方法以及核酸样品的组合物
CN118715566A (zh) 2022-03-08 2024-09-27 因美纳有限公司 多通道软件加速基因组读段映射引擎
WO2024006883A1 (en) 2022-06-29 2024-01-04 Tyra Biosciences, Inc. Polymorphic compounds and uses thereof
AU2023300362A1 (en) 2022-06-29 2025-01-09 Tyra Biosciences, Inc. Indazole compounds
US20240068010A1 (en) * 2022-08-31 2024-02-29 Genomill Health Oy Highly sensitive methods for accurate parallel quantification of variant nucleic acids
WO2024138112A1 (en) 2022-12-22 2024-06-27 Tyra Biosciences, Inc. Indazole compounds
TW202535368A (zh) 2023-12-15 2025-09-16 美商泰拉生物科學公司 吲唑化合物
WO2025132779A2 (en) 2023-12-22 2025-06-26 F. Hoffmann-La Roche Ag Methods and compositions for nucleic acid library and template preparation for duplexed sequencing by expansion
WO2025222097A1 (en) 2024-04-19 2025-10-23 Tyra Biosciences, Inc. Indazole-based protac degraders and their anticancer activity

Family Cites Families (167)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5310652A (en) 1986-08-22 1994-05-10 Hoffman-La Roche Inc. Reverse transcription with thermostable DNA polymerase-high temperature reverse transcription
US5322770A (en) 1989-12-22 1994-06-21 Hoffman-Laroche Inc. Reverse transcription with thermostable DNA polymerases - high temperature reverse transcription
US5130238A (en) 1988-06-24 1992-07-14 Cangene Corporation Enhanced nucleic acid amplification process
US5234809A (en) 1989-03-23 1993-08-10 Akzo N.V. Process for isolating nucleic acid
US5527676A (en) 1989-03-29 1996-06-18 The Johns Hopkins University Detection of loss of the wild-type P53 gene and kits therefor
US6677312B1 (en) 1989-03-29 2004-01-13 The Johns Hopkins University Methods for restoring wild-type p53 gene function
US6800617B1 (en) 1989-03-29 2004-10-05 The Johns Hopkins University Methods for restoring wild-type p53 gene function
US5362623A (en) 1991-06-14 1994-11-08 The John Hopkins University Sequence specific DNA binding by p53
EP0390323B2 (en) 1989-03-29 2012-08-08 Johns Hopkins University Detection of loss of the wild-type p53 gene
ES2091225T3 (es) 1989-07-11 1996-11-01 Gen Probe Inc Metodos para la amplificacion de las secuencias de acidos nucleicos.
CA2020958C (en) 1989-07-11 2005-01-11 Daniel L. Kacian Nucleic acid sequence amplification methods
US5494810A (en) 1990-05-03 1996-02-27 Cornell Research Foundation, Inc. Thermostable ligase-mediated DNA amplifications system for the detection of genetic disease
US5527670A (en) 1990-09-12 1996-06-18 Scientific Generics Limited Electrochemical denaturation of double-stranded nucleic acid
WO1992013103A1 (en) 1991-01-16 1992-08-06 The Johns Hopkins University Inherited and somatic mutations of apc gene in colorectal cancer of humans
US5352775A (en) 1991-01-16 1994-10-04 The Johns Hopkins Univ. APC gene and nucleic acid probes derived therefrom
US5455166A (en) 1991-01-31 1995-10-03 Becton, Dickinson And Company Strand displacement amplification
US5330892A (en) 1991-03-13 1994-07-19 The Johns Hopkins University MCC gene (mutated in colorectal cancer) used for diagnosis of cancer in humans
US5270184A (en) 1991-11-19 1993-12-14 Becton, Dickinson And Company Nucleic acid target generation
US5591826A (en) 1993-05-05 1997-01-07 The Johns Hopkins University Human MSH2 protein
US7326778B1 (en) 1993-05-05 2008-02-05 The John Hopkins University Mutator gene and hereditary non-polyposis colorectal cancer
US5492808A (en) 1993-05-05 1996-02-20 The Johns Hopkins University Means for detecting familial colon cancer (FCC)
WO1994029484A1 (en) 1993-06-09 1994-12-22 Gamera Bioscience Corporation Magnetic cycle reaction
WO1995013375A1 (en) 1993-11-10 1995-05-18 The Johns Hopkins University Tumor suppressor waf1
CA2177252A1 (en) 1993-12-02 1995-06-08 Albert De La Chapelle Human mutator gene hmsh2 and hereditary non polyposis colorectal cancer
US6482606B1 (en) 1994-01-27 2002-11-19 Human Genome Sciences, Inc. Human DNA mismatch repair polynucleotides
EP0749496A4 (en) 1994-01-27 1999-03-03 Human Genome Sciences Inc HUMAN DNA MALFUNCTION REPAIR PROTEINS
US6380369B1 (en) 1994-01-27 2002-04-30 Human Genome Sciences, Inc. Human DNA mismatch repair proteins
WO1995025177A1 (en) 1994-03-15 1995-09-21 Scientific Generics Limited Electrochemical denaturation of double-stranded nucleic acid
US5648211A (en) 1994-04-18 1997-07-15 Becton, Dickinson And Company Strand displacement amplification using thermophilic enzymes
US5942391A (en) 1994-06-22 1999-08-24 Mount Sinai School Of Medicine Nucleic acid amplification method: ramification-extension amplification method (RAM)
US6593086B2 (en) 1996-05-20 2003-07-15 Mount Sinai School Of Medicine Of New York University Nucleic acid amplification methods
US5705628A (en) 1994-09-20 1998-01-06 Whitehead Institute For Biomedical Research DNA purification and isolation using magnetic particles
US5648245A (en) 1995-05-09 1997-07-15 Carnegie Institution Of Washington Method for constructing an oligonucleotide concatamer library by rolling circle replication
US5710029A (en) 1995-06-07 1998-01-20 Gen-Probe Incorporated Methods for determining pre-amplification levels of a nucleic acid target sequence from post-amplification levels of product
US5705365A (en) 1995-06-07 1998-01-06 Gen-Probe Incorporated Kits for determining pre-amplification levels of a nucleic acid target sequence from post-amplification levels of product
AU714486B2 (en) 1995-11-21 2000-01-06 Yale University Unimolecular segment amplification and detection
US5854033A (en) 1995-11-21 1998-12-29 Yale University Rolling circle replication reporter systems
US6511805B1 (en) 1996-03-15 2003-01-28 The Penn State Research Foundation Methods for detecting papillomavirus DNA in blood plasma and serum
WO1997034015A1 (en) 1996-03-15 1997-09-18 The Penn State Research Foundation Detection of extracellular tumor-associated nucleic acid in blood plasma or serum using nucleic acid amplification assays
US8048629B2 (en) 1996-03-15 2011-11-01 The Penn State Research Foundation Detection of extracellular tumor-associated nucleic acid in blood plasma or serum
PT938320E (pt) 1996-03-26 2010-09-22 Michael S Kopreski Método que permite a utilização de arn extracelular extraído de plasma ou de soro para detectar, monitorizar ou avaliar o cancro
US5939291A (en) 1996-06-14 1999-08-17 Sarnoff Corporation Microfluidic method for nucleic acid amplification
GB9620209D0 (en) 1996-09-27 1996-11-13 Cemu Bioteknik Ab Method of sequencing DNA
EP1591541B1 (en) 1997-04-01 2012-02-15 Illumina Cambridge Limited Method of nucleic acid sequencing
GB9706654D0 (en) 1997-04-02 1997-05-21 Scient Generics Ltd Disassociation of interacting molecules
AU735293B2 (en) 1997-04-04 2001-07-05 Innogenetics N.V. Isothermal polymerase chain reaction by cycling the concentration of divalent metal ions
WO1999053102A1 (en) 1998-04-16 1999-10-21 Packard Bioscience Company Analysis of polynucleotide sequence
DE1020534T1 (de) 1998-11-09 2001-03-01 Eiken Kagaku K.K., Tokio/Tokyo Verfahren zur synthetisieren von nukleinsäure
GB9903906D0 (en) 1999-02-19 1999-04-14 Microbiological Res Authority Method and apparatus for nucleic acid strand separation
WO2000055369A1 (en) 1999-03-17 2000-09-21 The Board Of Trustees Of The Leland Stanford Junior University Mismatch repair detection
EP1169438A1 (en) * 1999-04-12 2002-01-09 Genentech, Inc. Pcr-based cloning method
US20060275782A1 (en) 1999-04-20 2006-12-07 Illumina, Inc. Detection of nucleic acid reactions on bead arrays
US7056661B2 (en) 1999-05-19 2006-06-06 Cornell Research Foundation, Inc. Method for sequencing nucleic acid molecules
AU7364700A (en) 1999-09-08 2001-04-10 University Of Victoria Innovation And Development Corporation Use of psychrotrophic bacterium in biotechnology applications
AU783873B2 (en) 1999-09-13 2005-12-15 Nugen Technologies, Inc. Methods and compositions for linear isothermal amplification of polynucleotide sequences
EP1218543A2 (en) 1999-09-29 2002-07-03 Solexa Ltd. Polynucleotide sequencing
JP2003515149A (ja) * 1999-11-26 2003-04-22 キュラジェン コーポレイション 核酸プローブアレイ
US6653079B2 (en) 2000-03-13 2003-11-25 Freshgene, Inc. Methods for detection of differences in nucleic acids
US6917726B2 (en) 2001-09-27 2005-07-12 Cornell Research Foundation, Inc. Zero-mode clad waveguides for performing spectroscopy with confined effective observation volumes
US6626906B1 (en) 2000-10-23 2003-09-30 Sdgi Holdings, Inc. Multi-planar adjustable connector
US7001724B1 (en) 2000-11-28 2006-02-21 Applera Corporation Compositions, methods, and kits for isolating nucleic acids using surfactants and proteases
CA2439477C (en) 2001-02-27 2014-04-15 Virco Bvba Circular probe amplification (cpa) using energy-transfer primers
NZ523167A (en) 2001-03-09 2006-08-31 Nugen Technologies Inc Methods, compositions and kits for amplifying RNA sequences of interest which employ an RNA/DNA composite primer
US7122715B2 (en) 2001-09-20 2006-10-17 Monsanto Technology Llc In vitro method to create circular molecules for use in transformation
US6977148B2 (en) 2001-10-15 2005-12-20 Qiagen Gmbh Multiple displacement amplification
US20110151438A9 (en) 2001-11-19 2011-06-23 Affymetrix, Inc. Methods of Analysis of Methylation
US7553619B2 (en) 2002-02-08 2009-06-30 Qiagen Gmbh Detection method using dissociated rolling circle amplification
US6815167B2 (en) 2002-04-25 2004-11-09 Geneohm Sciences Amplification of DNA to produce single-stranded product of defined sequence and length
CA2498764C (en) 2002-09-20 2015-11-10 New England Biolabs, Inc. Helicase dependent amplification of nucleic acids
JP2006519977A (ja) 2002-11-11 2006-08-31 アフィメトリックス インコーポレイテッド Dnaコピー数変化を同定するための方法
JP2006516410A (ja) 2003-02-03 2006-07-06 ジーイー・ヘルスケア・バイオサイエンス・コーポレイション 発現プロファイリングのためのcDNA増幅
US20080021205A1 (en) 2003-12-11 2008-01-24 Helen Blau Methods and Compositions for Use in Preparing Hairpin Rnas
ES2949821T3 (es) 2004-01-07 2023-10-03 Illumina Cambridge Ltd Matrices moleculares
AU2005216549A1 (en) 2004-02-27 2005-09-09 President And Fellows Of Harvard College Polony fluorescent in situ sequencing beads
US20100075384A1 (en) 2004-03-25 2010-03-25 New England Biolabs, Inc. Helicase-dependent amplification of circular nucleic acids
WO2005113824A2 (en) 2004-05-14 2005-12-01 Zhenghe Wang Protein tyrosine phosphatase mutations in cancers
US7170050B2 (en) 2004-09-17 2007-01-30 Pacific Biosciences Of California, Inc. Apparatus and methods for optical analysis of molecules
JP5068175B2 (ja) 2005-01-04 2012-11-07 日立化成工業株式会社 プライマー生成ローリングサークル型増幅
EP2272984B1 (en) 2005-02-01 2012-06-20 John Wayne Cancer Institute Use of ID4 for diagnosis and treatment of cancer
EP1866434B1 (en) 2005-02-19 2013-06-05 Avacta Group plc Isothermal nucleic acid amplification
ES2313143T3 (es) 2005-04-06 2009-03-01 Maurice Stroun Metodo para el diagnostico de cancer mediante la deteccion de adn y arn circulantes.
US9139849B2 (en) 2005-04-08 2015-09-22 The United States of America as Represented by the Government of the Department of Health and Human Services Rapid generation of long synthetic centromeric tandem repeats for mammalian artificial chromosome formation
WO2006110855A2 (en) * 2005-04-12 2006-10-19 454 Life Sciences Corporation Methods for determining sequence variants using ultra-deep sequencing
US20060228721A1 (en) * 2005-04-12 2006-10-12 Leamon John H Methods for determining sequence variants using ultra-deep sequencing
DK2620510T4 (da) 2005-06-15 2020-03-30 Complete Genomics Inc Enkeltmolekyle-arrays til genetisk og kemisk analyse
EP1922420B1 (en) 2005-08-19 2010-01-20 Bioventures, Inc. METHOD AND SUBSTANCES FOR ISOLATING miRNAs
CA2631248C (en) 2005-11-28 2016-01-12 Pacific Biosciences Of California, Inc. Uniform surfaces for hybrid material substrates and methods for making and using same
WO2007087312A2 (en) 2006-01-23 2007-08-02 Population Genetics Technologies Ltd. Molecular counting
WO2007092538A2 (en) 2006-02-07 2007-08-16 President And Fellows Of Harvard College Methods for making nucleotide probes for sequencing and synthesis
CN101432439B (zh) * 2006-02-24 2013-07-24 考利达基因组股份有限公司 Dna阵列上的高通量基因组测序
WO2007117832A2 (en) 2006-03-12 2007-10-18 Applera Corporation Methods of detecting target nucleic acids
EP2677039B8 (en) 2006-05-10 2022-10-05 DxTerity Diagnostics Incorporated Detection of nucleic acid targets using chemically reactive oligonucleotide probes
US8768629B2 (en) 2009-02-11 2014-07-01 Caris Mpi, Inc. Molecular profiling of tumors
EP2029777B1 (en) * 2006-05-31 2017-03-08 Sequenom, Inc. Methods and compositions for the extraction of nucleic acid from a sample
WO2008070352A2 (en) 2006-10-27 2008-06-12 Complete Genomics, Inc. Efficient arrays of amplified polynucleotides
AU2007203390B2 (en) 2007-04-26 2012-10-04 Yew Jin Fong Improved lace fastener
FR2924440B1 (fr) 2007-12-04 2015-01-09 Pf Medicament Nouveau procede de generation et de criblage d'une banque d'anticorps
PT3301446T (pt) * 2009-02-11 2020-07-14 Caris Mpi Inc Perfilagem molecular de tumores
JP2012517813A (ja) 2009-02-16 2012-08-09 エピセンター テクノロジーズ コーポレイション 1本鎖dnaの鋳型非依存性ライゲーション
WO2010117817A2 (en) 2009-03-30 2010-10-14 Life Technologies Corporation Methods for generating target specific probes for solution based capture
CN104404134B (zh) 2009-04-03 2017-05-10 莱弗斯基因股份有限公司 多重核酸检测方法和系统
WO2010120803A2 (en) * 2009-04-13 2010-10-21 Somagenics Inc. Methods and compositions for detection of small rnas
GB0910302D0 (en) 2009-06-15 2009-07-29 Lumora Ltd Nucleic acid amplification
US20110237444A1 (en) 2009-11-20 2011-09-29 Life Technologies Corporation Methods of mapping genomic methylation patterns
US9315857B2 (en) * 2009-12-15 2016-04-19 Cellular Research, Inc. Digital counting of individual molecules by stochastic attachment of diverse label-tags
US8835358B2 (en) 2009-12-15 2014-09-16 Cellular Research, Inc. Digital counting of individual molecules by stochastic attachment of diverse labels
US8801578B2 (en) 2009-12-21 2014-08-12 Core Industries, Llc Instructional displays and methods for exercise machine
RU2518090C2 (ru) * 2009-12-22 2014-06-10 Дзе Проктер Энд Гэмбл Компани Жидкий состав для чистки и/или глубокой очистки
US8889350B2 (en) 2010-03-26 2014-11-18 Swift Biosciences, Inc. Methods and compositions for isolating polynucleotides
CN101935697B (zh) * 2010-04-16 2015-11-25 中生方政生物技术有限公司 用于核酸序列检测的方法和试剂盒
WO2011161549A2 (en) * 2010-06-24 2011-12-29 Population Genetics Technologies Ltd. Methods and compositions for polynucleotide library production, immortalization and region of interest extraction
WO2012006291A2 (en) 2010-07-06 2012-01-12 Life Technologies Corporation Systems and methods to detect copy number variation
CN102971434B (zh) 2010-08-11 2014-04-09 中国科学院心理研究所 一种甲基化dna的高通量测序方法及其应用
EP2426217A1 (en) 2010-09-03 2012-03-07 Centre National de la Recherche Scientifique (CNRS) Analytical methods for cell free nucleic acids and applications
CN101985654A (zh) * 2010-10-21 2011-03-16 徐州医学院 检测多样本多位点snp的检测方法
US9260753B2 (en) * 2011-03-24 2016-02-16 President And Fellows Of Harvard College Single cell nucleic acid detection and analysis
EP3907297A1 (en) 2011-04-15 2021-11-10 The Johns Hopkins University Safe sequencing system
US9670527B2 (en) 2011-06-29 2017-06-06 The Johns Hopkins University Enrichment of nucleic acids by complimentary capture
JP2013051956A (ja) 2011-08-05 2013-03-21 Toshiba Corp 核酸解析法
WO2013035875A1 (ja) 2011-09-08 2013-03-14 独立行政法人理化学研究所 プライマーセット及びそれを用いた標的核酸配列の増幅方法並びに変異核酸の検出方法
WO2013056178A2 (en) 2011-10-14 2013-04-18 Foundation Medicine, Inc. Novel estrogen receptor mutations and uses thereof
WO2013059740A1 (en) 2011-10-21 2013-04-25 Foundation Medicine, Inc. Novel alk and ntrk1 fusion molecules and uses thereof
WO2013074632A1 (en) 2011-11-14 2013-05-23 Rose Floyd D Mismatch nucleotide purification and identification
US20130217023A1 (en) * 2012-02-22 2013-08-22 454 Life Sciences Corporation System And Method For Generation And Use Of Compact Clonally Amplified Products
HUE051845T2 (hu) 2012-03-20 2021-03-29 Univ Washington Through Its Center For Commercialization Módszerek a tömegesen párhuzamos DNS-szekvenálás hibaarányának csökkentésére duplex konszenzus szekvenálással
US8209130B1 (en) 2012-04-04 2012-06-26 Good Start Genetics, Inc. Sequence assembly
AU2013267609C1 (en) 2012-05-31 2019-01-03 Board Of Regents, The University Of Texas System Method for accurate sequencing of DNA
US10538807B2 (en) 2012-06-01 2020-01-21 Fred Hutchinson Cancer Research Center Compositions and methods for detecting rare nucleic acid molecule mutations
JP2015521472A (ja) 2012-06-14 2015-07-30 フレッド ハチンソン キャンサー リサーチ センター 核酸分子における高感度変異検出のための組成物および方法
US9540687B2 (en) 2012-07-11 2017-01-10 Berry Genomics Co., Ltd. DNA fragment detection method, DNA fragment detection kit and the use thereof
US9092401B2 (en) 2012-10-31 2015-07-28 Counsyl, Inc. System and methods for detecting genetic variation
EP3243937A1 (en) 2012-07-17 2017-11-15 Counsyl, Inc. System and methods for detecting genetic variation
EP2877594B1 (en) 2012-07-20 2019-12-04 Verinata Health, Inc. Detecting and classifying copy number variation in a fetal genome
US20140066317A1 (en) 2012-09-04 2014-03-06 Guardant Health, Inc. Systems and methods to detect rare mutations and copy number variation
US20160040229A1 (en) 2013-08-16 2016-02-11 Guardant Health, Inc. Systems and methods to detect rare mutations and copy number variation
AU2013337915A1 (en) 2012-10-31 2015-05-21 Becton, Dickinson And Company Selective amplification and real-time PCR detection of rare mutations
CA3150658A1 (en) 2013-01-18 2014-07-24 Foundation Medicine, Inc. Methods of treating cholangiocarcinoma
ES2900102T3 (es) 2013-02-20 2022-03-15 Univ Emory Composiciones para la secuenciación de ácidos nucleicos en mezclas
US10081825B2 (en) 2013-03-15 2018-09-25 Aegea Biotechnologies, Inc. Methods for amplification of nucleic acids utilizing a circularized template prepared from a target nucleic acid
CA3156663A1 (en) 2013-03-15 2014-09-18 Verinata Health, Inc. Generating cell-free dna libraries directly from blood
ES2831148T3 (es) 2013-03-15 2021-06-07 Univ Leland Stanford Junior Identificación y uso de marcadores tumorales de ácido nucleico circulante
US9290800B2 (en) 2013-03-15 2016-03-22 Pacific Biosciences Of California, Inc. Targeted rolling circle amplification
US20150033372A1 (en) 2013-05-01 2015-01-29 Kymab Limited Human VpreB & Chimaeric Surrogate Light Chains in Transgenic Non-Human Vertebrates
US9217167B2 (en) 2013-07-26 2015-12-22 General Electric Company Ligase-assisted nucleic acid circularization and amplification
US9644232B2 (en) 2013-07-26 2017-05-09 General Electric Company Method and device for collection and amplification of circulating nucleic acids
WO2015048535A1 (en) 2013-09-27 2015-04-02 Natera, Inc. Prenatal diagnostic resting standards
US10941397B2 (en) 2013-10-17 2021-03-09 Takara Bio Usa, Inc. Methods for adding adapters to nucleic acids and compositions for practicing the same
GB2535382A (en) 2013-11-07 2016-08-17 Univ Leland Stanford Junior Cell-free nucleic acids for the analysis of the human microbiome and components thereof
GB201321123D0 (en) 2013-11-29 2014-01-15 Linea Ab Q Amplification of circular molecules
US10767222B2 (en) * 2013-12-11 2020-09-08 Accuragen Holdings Limited Compositions and methods for detecting rare sequence variants
US11286519B2 (en) 2013-12-11 2022-03-29 Accuragen Holdings Limited Methods and compositions for enrichment of amplification products
US11859246B2 (en) 2013-12-11 2024-01-02 Accuragen Holdings Limited Methods and compositions for enrichment of amplification products
ES2784450T3 (es) 2013-12-28 2020-09-25 Guardant Health Inc Métodos y sistemas para detectar variantes genéticas
CN104745679B (zh) 2013-12-31 2018-06-15 杭州贝瑞和康基因诊断技术有限公司 一种无创检测egfr基因突变的方法及试剂盒
HUE058149T2 (hu) 2014-01-31 2022-07-28 Swift Biosciences Inc Javított eljárások DNS-szubsztrátok feldolgozására
EP3567122B1 (en) 2014-06-06 2021-02-17 Cornell University Method for identification and enumeration of nucleic acid sequence, expression, copy, or dna methylation changes, using combined nuclease, ligase, polymerase, and sequencing reactions
CN106715693A (zh) 2014-06-13 2017-05-24 伊卢米纳剑桥有限公司 用于制备序列文库的方法和组合物
WO2016011280A1 (en) 2014-07-16 2016-01-21 Tangen Biosciences, Inc. Isothermal methods for amplifying nucleic acid samples
EP3201350B1 (en) 2014-09-30 2020-12-02 Global Life Sciences Solutions USA LLC Method for nucleic acid analysis directly from an unpurified biological sample
US10844428B2 (en) 2015-04-28 2020-11-24 Illumina, Inc. Error suppression in sequenced DNA fragments using redundant reads with unique molecular indices (UMIS)
CN114807323A (zh) * 2015-10-09 2022-07-29 安可济控股有限公司 用于富集扩增产物的方法及组合物
CN108699505A (zh) 2015-12-03 2018-10-23 安可济控股有限公司 用于形成连接产物的方法和组合物
CA3024630A1 (en) 2016-05-16 2017-11-23 Accuragen Holdings Limited Method of improved sequencing by strand identification
US10370701B2 (en) 2016-06-17 2019-08-06 Pacific Biosciences Of California, Inc. Methods and compositions for generating asymmetrically-tagged nucleic acid fragments
CN109689888B (zh) 2016-06-23 2022-10-25 安可济控股有限公司 无细胞核酸标准品及其用途
WO2018035170A1 (en) * 2016-08-15 2018-02-22 Accuragen Holdings Limited Compositions and methods for detecting rare sequence variants
US11203782B2 (en) 2018-03-29 2021-12-21 Accuragen Holdings Limited Compositions and methods comprising asymmetric barcoding

Similar Documents

Publication Publication Date Title
JP2017510244A5 (enExample)
US20240229105A1 (en) Attenuators
US11293048B2 (en) Attenuators
JP2019196400A5 (enExample)
US20200354773A1 (en) High multiplex pcr with molecular barcoding
JP6525473B2 (ja) 複製物配列決定リードを同定するための組成物および方法
JP2018524993A5 (enExample)
JP2017526353A (ja) 標的化されたシークエンシングからのデジタル測定値
JP7539770B2 (ja) ゲノム再編成検出のための配列決定方法
CN107075566B (zh) 用于制备核酸的等温方法及相关组合物
JP2016521548A5 (enExample)
JP2012514451A5 (enExample)
WO2013021841A1 (ja) 核酸解析法
JP2015500012A (ja) 組成物中のrnaを特徴づける方法およびキット
US10801056B2 (en) Kit and method for detection of microRNA
JP7134186B2 (ja) Rnaおよびdnaからの核酸ライブラリーの作製
JP2018507706A (ja) Pcr方法
EP4010493B1 (en) Methods for the multiplexed isothermal amplification of nucleic acid sequences
JP6837073B2 (ja) プライマー伸長中のプライマー−プライマー相互作用の排除
CN107109478B (zh) 获得配对末端测序信息的方法
EP4092136B1 (en) Capture probes and uses thereof
JP2014516545A5 (enExample)
CN110846395A (zh) 一种检测肺动脉高压病的kcnk3基因探针组及其应用
WO2025109116A1 (en) Method for the generation of a cdna library from an rna sample
JP2025003961A (ja) マウス腫瘍モデルにおける免疫応答を評価するための方法および組成物