WO2002059131A1 - Formulation of boronic acid compounds - Google Patents

Formulation of boronic acid compounds Download PDF

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Publication number
WO2002059131A1
WO2002059131A1 PCT/US2002/002086 US0202086W WO02059131A1 WO 2002059131 A1 WO2002059131 A1 WO 2002059131A1 US 0202086 W US0202086 W US 0202086W WO 02059131 A1 WO02059131 A1 WO 02059131A1
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Prior art keywords
boronic acid
compound
carbonyl
aryl
alkyl
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PCT/US2002/002086
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English (en)
French (fr)
Inventor
Louis Plamondon
Louis Grenier
Julian Adams
Shanker Lal Gupta
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Millennium Pharmaceuticals, Inc.
National Institutes Of Health, Dhhs
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Application filed by Millennium Pharmaceuticals, Inc., National Institutes Of Health, Dhhs filed Critical Millennium Pharmaceuticals, Inc.
Priority to JP2002559433A priority Critical patent/JP2004517932A/ja
Priority to CA002435124A priority patent/CA2435124A1/en
Priority to EP02718868A priority patent/EP1360189A1/en
Publication of WO2002059131A1 publication Critical patent/WO2002059131A1/en

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    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K5/00—Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
    • C07K5/04—Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
    • C07K5/08—Tripeptides
    • C07K5/0827—Tripeptides containing heteroatoms different from O, S, or N
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P29/00—Non-central analgesic, antipyretic or antiinflammatory agents, e.g. antirheumatic agents; Non-steroidal antiinflammatory drugs [NSAID]
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12—Antivirals
    • A61P31/14—Antivirals for RNA viruses
    • A61P31/18—Antivirals for RNA viruses for HIV
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00—Antineoplastic agents
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P37/00—Drugs for immunological or allergic disorders
    • A61P37/02—Immunomodulators
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P43/00—Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07F—ACYCLIC, CARBOCYCLIC OR HETEROCYCLIC COMPOUNDS CONTAINING ELEMENTS OTHER THAN CARBON, HYDROGEN, HALOGEN, OXYGEN, NITROGEN, SULFUR, SELENIUM OR TELLURIUM
    • C07F5/00—Compounds containing elements of Groups 3 or 13 of the Periodic Table
    • C07F5/02—Boron compounds
    • C07F5/025—Boronic and borinic acid compounds
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07F—ACYCLIC, CARBOCYCLIC OR HETEROCYCLIC COMPOUNDS CONTAINING ELEMENTS OTHER THAN CARBON, HYDROGEN, HALOGEN, OXYGEN, NITROGEN, SULFUR, SELENIUM OR TELLURIUM
    • C07F5/00—Compounds containing elements of Groups 3 or 13 of the Periodic Table
    • C07F5/02—Boron compounds
    • C07F5/04—Esters of boric acids
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K5/00—Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
    • C07K5/04—Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
    • C07K5/06—Dipeptides
    • C07K5/06191—Dipeptides containing heteroatoms different from O, S, or N
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K7/00—Peptides having 5 to 20 amino acids in a fully defined sequence; Derivatives thereof
    • C07K7/02—Linear peptides containing at least one abnormal peptide link
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00—Medicinal preparations containing peptides

Definitions

  • This invention relates to the formulation of pharmaceutical compounds. More particularly, the invention relates to stable, pharmaceutically acceptable compositions prepared from boronic acid compounds. The invention also relates to methods for preparing such compositions. Summary of the Related Art
  • peptide boronic ester and acid compounds useful as proteasome inhibitors describe peptide boronic ester and acid compounds useful as proteasome inhibitors.
  • the references also describe the use of boronic ester and acid compounds to reduce the rate of muscle protein degradation, to reduce the activity of NF- ⁇ B in a cell, to reduce the rate of degradation of p53 protein in a cell, to inhibit cyclin degradation in a cell, to inhibit the growth of a cancer cell, to inhibit antigen presentation in a cell, to inhibit NF- ⁇ B dependent cell adhesion, and to inhibit HIV replication.
  • proteasome inhibitors including boronic acid compounds, are useful for treating infarcts such as occur during stroke or myocardial infarction.
  • alkylboronic acids are relatively difficult to obtain in analytically pure form.
  • Snyder et al J. Am. Chem. Soc. 80: 3611 (1958)
  • arylboronic acid compounds readily form cyclic trimeric anhydrides under dehydrating conditions.
  • alkylboronic acids and their boroxines are often air-sensitive.
  • Korcek et al, ⁇ . Chem. Soc, Perkin Trans. 2 242 (1972) teaches that butylboronic acid is readily oxidized by air to generate 1- butanol and boric acid.
  • the present invention provides stable, pharmaceutically acceptable compositions prepared from boronic acid compounds.
  • the invention also provides methods for preparing such compositions.
  • the invention provides the discovery that lyophilization of an aqueous mixture comprising a boronic acid compound and a compound having at least two hydroxyl groups produces a stable composition that readily releases the boronic acid compound upon dissolution in aqueous media.
  • the invention provides boronate ester compounds having formula (1):
  • P is hydrogen or an amino-group protecting moiety
  • R is hydrogen or alkyl
  • A is 0, 1, or 2;
  • R 1 , R 2 , and R 3 are independently hydrogen, alkyl, cycloalkyl, aryl, or -CH 2 - R 5 ;
  • R 5 in each instance, is one of aryl, aralkyl, alkaryl, cycloalkyl, heterocyclyl, heteroaryl, or -W-R 6 , where W is a chalcogen and R 6 is alkyl; where the ring portion of any of said aryl, aralkyl, alkaryl, cycloalkyl, heterocyclyl, or heteroaryl in R 1 , R 2 , R 3 or R 5 can be optionally substituted ; and Z 1 and Z 2 together form a moiety derived from a sugar, wherein the atom attached to boron in each case is an oxygen atom.
  • the invention provides a composition comprising a compound of formula (2):
  • P is hydrogen or an amino-group-protecting moiety
  • R is hydrogen or alkyl
  • R 1 , R 2 , and R 3 are independently hydrogen, alkyl, cycloalkyl, aryl, or -CH 2 -
  • R 5 in each instance, is one of aryl, aralkyl, alkaryl, cycloalkyl, heterocyclyl, heteroaryl, or -W-R 6 , where W is a chalcogen and R 6 is alkyl; where the ring portion of any of said aryl, aralkyl, alkaryl, cycloalkyl, heterocyclyl, or heteroaryl in R 1 , R 2 , R 3 or R 5 can be optionally substituted; and
  • Z 3 and Z 4 together form a moiety derived from a compound having at least two hydroxyl groups separated by at least two connecting atoms in a chain or ring, said chain or ring comprising carbon atoms and, optionally, a heteroatom or heteroatoms which can be N, S, or O; in a lyophilized powder.
  • the invention provides a method for formulating a boronic acid compound, the method comprising:
  • the invention provides a method for formulating a boronic acid compound, the method comprising:
  • the invention provides compositions prepared by the methods of the invention.
  • the invention provides boronic acid anhydride compounds useful in the methods of the invention.
  • the invention provides stable, pharmaceutically acceptable compositions prepared from boronic acid compounds and methods for preparing the compositions.
  • the invention also provides novel boronate ester compounds.
  • the invention further provides boronic acid anhydride compounds useful in the methods of the invention.
  • the patent and scientific literature referred to herein establishes knowledge that is available to those with skill in the art.
  • the issued patents, applications, and references that are cited herein are hereby incorporated by reference to the same extent as if each was specifically and individually indicated to be incorporated by reference. In the case of inconsistencies, the present disclosure will prevail.
  • formulation of the boronic acid compound refers to the preparation of a boronic acid compound in a form suitable for administration to a mammalian subject, preferably a human.
  • formulation of the boronic acid compound comprises addition of pharmaceutically acceptable excipients, diluents, or carriers.
  • formulation of the boronic acid compound comprises formation of a chemical derivative of the boronic acid compound, preferably formation of a boronate ester.
  • formulation refers to any form commonly used for pharmaceutical administration, including solids, liquids, suspensions, creams, and gels.
  • the formulation is preferably a lyophilized powder.
  • lyophilized powder refers to any solid material obtained by lyophilization of an aqueous mixture.
  • stable formulation any formulation having sufficient stability to have utility as a pharmaceutical agent.
  • the formulation has sufficient stability to allow storage at a convenient temperature, preferably between 0 °C and 40 °C, for a reasonable period of time, preferably longer than one month, more preferably longer than three months, even more preferably longer than six months, and most preferably longer than one year.
  • boronic acid refers to any chemical compound comprising a -B(OH) 2 moiety. Snyder et al, J. Am. Chem. Soc. 80: 3611 (1958), teaches that arylboronic acid compounds readily form oligomeric anhydrides by dehydration of the boronic acid moiety.
  • boronic acid is expressly intended to encompass free boronic acids, oligomeric anhydrides, including, but not limited to, dimers, trimers, and tetramers, and mixtures thereof.
  • compound having at least two hydroxyl groups refers to any compound having two or more hydroxyl groups.
  • the two hydroxyl groups are preferably separated by at least two connecting atoms, preferably from about 2 to about 5 connecting atoms, more preferably 2 or 3 connecting atoms.
  • the connecting atoms may be in a chain or a ring, the chain or ring comprising carbon atoms and, optionally, a heteroatom or heteroatoms which can be N, S, or O.
  • the term "dihydroxy compound” may be used to refer to a compound having at least two hydroxyl groups, as defined above.
  • the term "dihydroxy compound” is not intended to be limited to compounds having only two hydroxyl groups.
  • amino-group protecting moiety refers to any group used to derivatize an amino group, especially an N-terminal amino group of a peptide or amino acid. Such groups include, without limitation, alkyl, acyl, alkoxycarbonyl, aminocarbonyl, and sulfonyl moieties. However, the term “amino-group protecting moiety” is not intended to be limited to those particular protecting groups that are commonly employed in organic synthesis, nor is it intended to be limited to groups that are readily cleavable.
  • chalcogen refers to the elements oxygen or sulfur.
  • alkyl refers to straight and branched chain aliphatic groups having from 1 to 12 carbon atoms, preferably 1-8 carbon atoms, more preferably 1-6 carbon atoms, and still more preferably 1-4 carbon atoms, which may be optionally substituted with one, two or three substituents. Unless otherwise explicitly stated, the term “alkyl” is meant to include saturated, unsaturated, and partially unsaturated aliphatic groups. When unsaturated groups are particularly intended, the terms “alkenyl” or “alkynyl” will be used. When only saturated groups are intended, the term “saturated alkyl” will be used.
  • Preferred saturated alkyl groups include, without limitation, methyl, ethyl, propyl, isopropyl, butyl, isobutyl, sec-butyl, tert-butyl, pentyl, and hexyl.
  • cycloalkyl as employed herein includes saturated and partially unsaturated cyclic hydrocarbon groups having 3 to 12 carbons, preferably 3 to 8 carbons, and more preferably 3 to 6 carbons, wherein the cycloalkyl group additionally may be optionally substituted.
  • Preferred cycloalkyl groups include, without limitation, cyclopropyl, cyclobutyl, cyclopentyl, cyclopentenyl, cyclohexyl, cyclohexenyl, cycloheptyl, and cyclooctyl.
  • aryl is a C 6 -C 14 aromatic moiety comprising one to three aromatic rings, which may be optionally substituted.
  • the aryl group is a C 6 -C 10 aryl group.
  • Preferred aryl groups include, without limitation, phenyl, naphthyl, anthracenyl, and fluorenyl.
  • An “aralkyl” or “arylalkyl” group comprises an aryl group covalently linked to an alkyl group, either of which may independently be optionally substituted or unsubstituted.
  • the aralkyl group is (C.-C 6 )alk(C 6 -C 10 )aryl, including, without limitation, benzyl, phenethyl, and naphthylmethyl.
  • An "alkaryl” or “alkylaryl” group is an aryl group having one or more alkyl substituents. Examples of alkaryl groups include, without limitation, tolyl, xylyl, mesityl, ethylphenyl, tert-butylphenyl, and methylnaphthyl.
  • heterocycle refers to any stable ring structure having from about 3 to about 8 atoms, wherein one or more atoms are selected from the group consisting of N, O, and S.
  • the nitrogen and sulfur heteroatoms of the heterocyclic moiety may be optionally oxidized, and the nitrogen atoms may be optionally quaternized.
  • the heterocyclic ring can be attached to its pendant group at any heteroatom or carbon atom that results in a stable formula.
  • stable compound or “stable formula” is meant to refer to a compound that is sufficiently robust to survive isolation to a useful degree of purity from a reaction mixture and formulation into an efficacious therapeutic agent.
  • the heterocyclic group may be optionally substituted on carbon at one or more positions with any of the substituents recited above.
  • the heterocyclic group may also independently be substituted on nitrogen with alkyl, aryl, aralkyl, alkylcarbonyl, alkylsulfonyl, arylcarbonyl, arylsulfonyl, alkoxycarbonyl, aralkoxycarbonyl, oxo, or hydroxy, or on sulfur with oxo or lower alkyl.
  • Preferred heterocyclic groups include, without limitation, epoxy, aziridinyl, tetrahydrofuranyl, pyrrolidinyl, piperidinyl, piperazinyl, thiazolidinyl, oxazolidinyl, oxazolidinonyl, and morpholinyl.
  • the heterocyclic group may also be fused to an aryl, heteroaryl, or heterocyclic group. Examples of such fused heterocyles include, without limitation, tetrahydroquinoline and dihydrobenzofuran.
  • heteroaryl and “aromatic heterocyle” refer to groups having 5 to 14 ring atoms, preferably 5, 6, 9, or 10 ring atoms; having 6, 10, or 14 ⁇ electrons shared in a cyclic array; and having, in addition to carbon atoms, from one to about four, preferably from one to about three, heteroatoms selected from the group consisting of N, O, and S.
  • the heteroaryl group may be optionally substituted on carbon at one or more positions with any of the substituents recited above.
  • Preferred heteroaryl groups include, without limitation, thienyl, benzothienyl, furyl, benzofuryl, dibenzofuryl, pyrrolyl, imidazolyl, pyrazolyl, pyridyl, pyrazinyl, pyrimidinyl, indolyl, quinolyl, isoquinolyl, quinoxalinyl, tetrazolyl, oxazolyl, thiazolyl, and isoxazolyl.
  • a "substituted" alkyl, cycloalkyl, aryl, heterocyclyl, or heteroaryl group is one having from one and to about four, preferably from one to about three, more preferably one or two, non-hydrogen substituents.
  • Suitable substituents include, without limitation, halo, hydroxy, oxo, nitro, haloalkyl, alkyl, alkaryl, aryl, aralkyl, alkoxy, aryloxy, amino, acylamino, alkylcarbamoyl, arylcarbamoyl, aminoalkyl, alkoxycarbonyl, carboxy, hydroxyalkyl, alkanesulfonyl, arenesulfonyl, alkanesulfonamido, arenesulfonamido, aralkylsulfonamido, alkylcarbonyl, acyloxy, cyano, and ureido groups.
  • the substituents are independently selected from the group consisting of C.-C. alkyl,C 3 -C 8 cycloalkyl, (C 1 -C 6 )alkyl(C 3 -C 3 ) cycloalkyl, C 2 -C 8 alkenyl, C 2 -C 8 alkynyl, cyano, amino, C.-C 6 alkylamino, di(C.-C 6 )alkylamino, benzylamino, dibenzylamino, nitro, carboxy, carbo(C 1 -C 6 )alkoxy, trifluoromethyl, halogen, C. ⁇ C 6 alkoxy, C 6 -C 10 aryl, (C 6 -C 10 )aryl(C.-C 6 )alkyl, (C 6 -C 10 )aryl(C C 6 )alkoxy, hydroxy, C C 6 alkylthio, C--C.
  • halogen or halo as employed herein refers to chlorine, bromine, fluorine, or iodine.
  • oxo refers to an oxygen atom, which forms a carbonyl when attached to carbon, an N-oxide when attached to nitrogen, and a sulfoxide or sulfone when attached to sulfur.
  • acyl refers to an alkylcarbonyl or arylcarbonyl substituent.
  • acylamino refers to an amide group attached at the nitrogen atom.
  • carbamoyl refers to an amide group attached at the carbonyl carbon atom.
  • the nitrogen atom of an acylamino or carbamoyl substituent may be additionally substituted.
  • sulfonamido refers to a sulfonamide substituent attached by either the sulfur or the nitrogen atom.
  • amino is meant to include NH 2 , alkylamino, arylamino, and cyclic amino groups.
  • ureido refers to a substituted or unsubstituted urea moiety.
  • the invention provides boronate ester compounds having formula (1): wherein
  • P is hydrogen or an amino-group protecting moiety
  • R is hydrogen or alkyl
  • A is 0, 1, or 2;
  • R 1 , R 2 , and R 3 are independently hydrogen, alkyl, cycloalkyl, aryl, or -CH 2 -
  • R 5 in each instance, is one of aryl, aralkyl, alkaryl, cycloalkyl, heterocyclyl, heteroaryl, or -W-R 6 , where W is a chalcogen and R 6 is alkyl; where the ring portion of any of said aryl, aralkyl, alkaryl, cycloalkyl, heterocyclyl, or heteroaryl in R 1 , R 2 , R 3 or R 5 can be optionally substituted; and
  • Z 1 and Z 2 together form a moiety derived from a sugar, wherein the atom attached to boron in each case is an oxygen atom.
  • the term "moiety derived from a sugar” refers to a moiety formed by removing the hydrogen atoms from two hydroxyl groups of any sugar moiety.
  • the moiety derived from a sugar may be attached to boron by any two of the hydroxyl groups of the sugar.
  • the boronate ester forms a 5-, 6-, 7-, 8-, or 9-membered ring. In some preferred embodiments, the boronate ester forms a 5- or 6-membered ring.
  • the sugar is preferably a monosaccharide or disaccharide.
  • suitable sugars include, glucose, sucrose, fructose, trehalose, mannitol, and sorbitol.
  • the sugar is a reduced sugar, more preferably mannitol or sorbitol.
  • Z 1 and Z 2 together form a moiety of formula C 6 H 12 0 6 , wherein the oxygen atoms of the two deprotonated hydroxyl groups form covalent attachments with boron to form a boronate ester compound.
  • the mannitol or sorbitol boronate ester compound has one of the following structures:
  • the mannitol or sorbitol boronate ester forms a symmetrical 5-membered ring having the following structure:
  • the mannitol or sorbitol is of the D-configuration, although the L-configuration may also be used.
  • Z 1 and Z 2 together form a moiety derived from D-mannitol.
  • the boronate ester compound preferably has one of the following structures:
  • the boronate ester compound has the following structure:
  • the P moiety of the compound of formula (1) is preferably hydrogen or one of R -C(O)-, R -S(O) -, R 7 -NH-C(0)-, or R -O-C(O)-, where R 7 is one of alkyl, aryl, alkaryl, or aralkyl, any of which can be optionally substituted, or when Y is R -C(O)- or R 7 -S(0) 2 - R 7 can also be an optionally substituted 5- to 10- membered saturated, partially unsaturated, or aromatic heterocycle.
  • P is one of R 7 -C(0)- or R 7 -S(0) 2 -, and R 7 is an optionally substituted 5- to 10-membered saturated, partially unsaturated, or aromatic heterocycle.
  • R 7 is an aromatic heterocycle, more preferably pyrazinyl, pyridyl, quinolyl, or quinoxalinyl, or a saturated heterocycle, preferably morpholinyl.
  • P is (2- pyrazine)carbonyl or (2-pyrazine)sulfonyl.
  • R is hydrogen. In some other preferred embodiments, R is alkyl, preferably -C. alkyl, more preferably C.-C 4 alkyl, and most preferably methyl or ethyl.
  • the variable A in formula (1) can be 0, 1, or 2. Thus, when A is zero, the residue within the brackets is not present and the boronate ester compound is a dipeptide. Similarly, where A is 1, the residue within the brackets is present and the compound is a tripeptide. Where A is 2, the compound is a tetrapeptide. In certain particularly preferred embodiments, A is zero.
  • peptide for purposes of the invention, the terms “peptide”, “dipeptide”, and “tripeptide” are intended to encompass compounds comprising natural amino acid residues, unnatural amino acid residues, or a combination of natural and unnatural amino acid residues. It will be apparent from formulae (l)-(3), that the terms “peptide”, “dipeptide”, and “tripeptide” are used herein to refer to compounds in which the carboxylic acid functionality of the C-terminal amino acid residue is replaced by a boronic acid or boronate ester functionality.
  • R 1 , R 2 , and R 3 in formula (1) are each independently one of hydrogen, C C 8 alkyl, C 3 -C 10 cycloalkyl, or C 6 -C 10 aryl, or -CH 2 -R 5 , wherein each of R 1 , R 2 , R 3 , and R 5 may be optionally substituted. More preferably, R 1 , R 2 , and R 3 are each independently one of C.-C 4 alkyl or -CH 2 -R 5 , and R 5 is one of cycloalkyl, aryl, heterocyclyl, heteroaryl, or -W-R 6 where W is chalcogen and R 6 is alkyl.
  • R 5 is one of C 6 -C 10 aryl, (C 6 -C 10 )ar(C 1 -C 6 )alkyl, (C 1 -C 6 )alk(C 6 -C 10 )aryl, C 3 -C 10 cycloalkyl, C.-C 8 alkoxy, or C.-C 8 alkylthio or a 5- to 10-membered heteroaryl ring.
  • the compound of formula (1) is one of: D-Mannitol lV-(2-pyrazine)carbonyl-L-phenylalanine-L-leucine boronate;
  • the compound of formula (1) is D-Mannitol N-(2-pyrazine)carbonyl-L-phenylalanine-L-leucine boronate, preferably having the following structure:
  • the invention provides a composition comprising a compound of formula (2): wherein
  • P is hydrogen or an amino-group-protecting moiety
  • R is hydrogen or alkyl
  • A is 0, 1, or 2;
  • R 1 , R 2 , and R 3 are independently hydrogen, alkyl, cycloalkyl, aryl, or -CH 2 -
  • R 5 in each instance, is one of aryl, aralkyl, alkaryl, cycloalkyl, heterocyclyl, heteroaryl, or -W-R 6 , where W is a chalcogen and R 6 is alkyl; where the ring portion of any of said aryl, aralkyl, alkaryl, cycloalkyl, heterocyclyl, or heteroaryl in R 1 , R 2 , R 3 or R 5 can be optionally substituted; and
  • Z 3 and Z 4 together form a moiety derived from a compound having at least two hydroxyl groups separated by at least two connecting atoms in a chain or ring, said chain or ring comprising carbon atoms and, optionally, a heteroatom or heteroatoms which can be N, S, or O, wherein the atom attached to boron in each case is an oxygen atom; in a lyophilized powder.
  • Preferred values for the variables P, R, A, R 1 , R 2 , R 3 , R 5 , and R 6 according to this aspect of the invention are as described above for the first aspect.
  • the term "moiety derived from a compound having at least two hydroxyl groups" according to this aspect of the invention is used analogously to the term "moiety derived from a sugar” described above, and thus refers to a moiety formed by removing the hydrogen atoms from two hydroxyl groups of a compound having at least two hydroxyl groups.
  • the moiety derived from a compound having at least two hydroxyl groups may be attached to boron by the oxygen atoms of any two of its hydroxyl groups.
  • the boron atom, the oxygen atoms attached to boron, and the atoms connecting the two oxygen atoms together form a 5- or 6-membered ring.
  • suitable compounds having at least two hydroxyl groups include, without limitation, pinanediol, pinacol, perfluoropinacol, ethylene glycol, diethylene glycol, catechol, 1,2-cyclohexanediol, 1,3-propanediol, 2,3-butanediol, 1,2- butanediol, 1,4-butanediol, glycerol, and diethanolamine.
  • the dihydroxy compound is preferably pharmaceutically acceptable and is preferably miscible or soluble in water or an alcoholic solvent.
  • the dihydroxy compound is a sugar, as described above, preferably a monosaccharide or disaccharide, more preferably a reduced sugar, and most preferably sorbitol or mannitol.
  • the dihydroxy compound is mannitol, most preferably D-mannitol.
  • the composition according to this aspect of the invention is in the form of a lyophilized powder. In some preferred embodiments, the composition also comprises the free dihydroxy compound.
  • the dihydroxy compound and the compound of formula (1) are present in the mixture in a molar ratio ranging from about 0.5:1 to about 100:1, more preferably from about 5:1 to about 100:1.
  • the dihydroxy compound and the compound of formula (1) are present in a ratio ranging from about 10:1 to about 100:1, from about 20:1 to about 100:1, or from about 40:1 to about 100:1.
  • the composition further comprises one or more other pharmaceutically acceptable excipients, carriers, diluents fillers, salts, buffers, stabilizers, solubilizers, and other materials well known in the art.
  • pharmaceutically acceptable formulations containing these materials is described in, e.g., Remington: The Science and Practice of Pharmacy, 20th Ed., ed. A. Gennaro, Lippincott Williams & Wilkins, 2000.
  • the compounds and compositions according to the first and second aspects of the invention may be prepared by the methods described herein, or by any method suitable to produce the compound or composition.
  • the boronate esters of formula (1) can be prepared from the corresponding boronic acids by lyophilization in the presence of mannitol or sorbitol, as described herein, or, alternatively, can be prepared from another boronate ester by transesterification.
  • the boronate esters of formula (1) can be prepared by incorporation of the sugar moiety at an earlier stage in the synthesis.
  • the invention provides a method for formulating a boronic acid compound, the method comprising:
  • the aqueous mixture comprises one or more co-solvents in addition to water.
  • the co-solvent is miscible with water.
  • the co-solvent is an alcohol, including, without limitation, ethanol and tert-butanol.
  • the composition of the solvent mixture may range from about 5% to about 95% v/v alcohol.
  • the aqueous solvent mixture comprises from about 30% to about 50% alcohol, preferably from about 35% to about 45% alcohol.
  • the aqueous solvent mixture comprises about 40% fert-butanol.
  • the aqueous solvent mixture comprises from about 1% to about 15% alcohol, preferably from about 5% to about 10% alcohol. In certain preferred embodiments, the aqueous solvent mixture comprises from about 5% to about 10% ethanol.
  • the compound having at least two hydroxyl groups and the boronic acid compound are present in the mixture in a molar ratio ranging from about 1:1 to about 100:1. In various embodiments, the molar ratio of dihydroxy compound to boronic acid compound is about 10:1, 20:1, 30:1, 40:1, 50:1, 60:1, 70:1, 80:1, 90: 1, or 100:1. Other ratios are also possible. These ratios are approximate, and may vary somewhat for weighing ease.
  • the aqueous mixture contained dihydroxy compound and boronic acid compound in a 10:1 w/w ratio, which corresponds to a 21:1 molar ratio.
  • the aqueous mixture can be prepared by any order of addition.
  • the dihydroxy compound is added to an aqueous mixture comprising a boronic acid compound.
  • the boronic acid compound is added to an aqueous mixture comprising a dihydroxy compound.
  • the boronic acid compound and dihydroxy compound can be added at the same time, or nearly at the same time.
  • the mixture further comprises one or more pharmaceutically acceptable excipients, carriers, diluents fillers, salts, buffers, stabilizers, solubilizers, and other materials well known in the art.
  • pharmaceutically acceptable formulations containing these materials is described in, e.g., Remington: The Science and Practice of Pharmacy, 20th Ed., ed. A. Gennaro, Lippincott Williams & Wilkins, 2000.
  • Preferred compounds having at least two hydroxyl groups are as described above for the second aspect.
  • the boronic acid compound according to this aspect of the invention has formula (3): wherein
  • P is hydrogen or an ammo-group-protecting moiety
  • R is hydrogen or alkyl; A is 0, 1, or 2;
  • R 1 , R 2 , and R 3 are independently hydrogen, alkyl, cycloalkyl, aryl, or -CH 2 - R 5 ;
  • R 5 in each instance, is one of aryl, aralkyl, alkaryl, cycloalkyl, heterocyclyl, heteroaryl, or -W-R 6 , where W is a chalcogen and R 6 is alkyl; where the ring portion of any of said aryl, aralkyl, alkaryl, cycloalkyl, heterocyclyl, or heteroaryl in R 1 , R 2 , R 3 or R 5 can be optionally substituted; and
  • Z 5 and Z 6 are each OH.
  • the boronic acid compound is one of:
  • N-(4-morpholine)carbonyl-[0-(2-pyridylmethyl)]-L-tyrosine-L-leucine boronic acid N-(4-morpholine)carbonyl-[0-(2-pyridylmethyl)]-L-tyrosine-L-leucine boronic acid.
  • the invention provides a method for formulating a boronic acid compound, the method comprising:
  • boronic acid anhydride refers to a chemical compound formed by combination of two or more molecules of a boronic acid compound of formula (3), with loss of one or more water molecules from the boronic acid moieties. When mixed with water, the boronic acid anhydride compound is hydrated to release a free boronic acid compound of formula (3).
  • the boronic acid anhydride structure can comprise two, three, four, or more boronic acid units and can have a cyclic or linear configuration.
  • the boronic acid anhydride compound exists substantially in a single oligomeric form.
  • the term "boronic acid anhydride compound” also encompasses mixtures of different oligomeric boronic acid anhydrides. Non-limiting examples of such oligomeric boronic acid anhydrides are illustrated below:
  • n is an integer from 0 to about 10, preferably 0, 1, 2, 3, or 4.
  • W at each occurrence, preferably has formula (6):
  • the boronic acid anhydride compound comprises a cyclic trimer ("boroxine") of formula (5), wherein n is 1 and W has the meaning given above.
  • the boronic acid anhydride compound exists in a single oligomeric anhydride form. In some embodiments, at least 85%, 90%, 95%, or 99% of the boronic acid present in the boronic acid anhydride compound exists in a single oligomeric anhydride form. In some embodiments, the boronic acid anhydride compound consists essentially of a single oligomeric boronic acid anhydride. In some embodiments, the boronic acid anhydride compound consists of a single oligomeric boronic acid anhydride.
  • the boronic acid anhydride compound consists of, or consists essentially of, a boroxine of formula (5), wherein n is 1, and W has the meaning given above.
  • the boronic acid anhydride compound consists of, or consists essentially of, a boroxine having formula (7):
  • the boronic acid anhydride compound preferably can be prepared from the corresponding boronic acid compound of formula (3) by exposure to dehydrating conditions, including, but not limited to, recrystallization, lyophilization, exposure to heat, and /or exposure to a drying agent.
  • suitable recrystallization solvents include ethyl acetate, dichloromethane, hexanes, ether, acetonitrile, ethanol, and mixtures thereof.
  • the invention provides compositions prepared according to the methods of the third or fourth aspects of the invention.
  • formulation of a boronic acid according to the methods of the invention results in formation of a chemical derivative of the boronic acid compound, preferably formation of a boronate ester.
  • formulation of a boronic acid compound according to the method of the invention produces a composition comprising a boronate ester compound, according to the second aspect of the invention.
  • formulation of a boronic acid compound according to the method of the invention does not result in formation of a chemical derivative of the boronic acid compound.
  • the composition according to the fifth aspect of the invention comprises a boronic acid compound and a compound having at least two hydroxyl groups in a lyophilized powder.
  • compositions according to the second and fifth aspects of the invention can be readily reconstituted by adding an aqueous solvent.
  • the reconstitution solvent is suitable for pharmaceutical administration.
  • suitable reconstitution solvents include, without limitation, water, saline, and phosphate buffered saline (PBS).
  • PBS phosphate buffered saline
  • the compositions according to the second or fifth aspects of the invention are preferably reconstituted with sterile saline (0.9% w/v).
  • the invention provides a boronic acid anhydride compound useful for the methods of the invention.
  • Preferred boronic acid anhydride compounds are as described above for the fourth aspect of the invention.
  • the boronic acid anhydride compound is hydrated to release the free boronic acid.
  • Example 1 Preparation of a lyophilized formulation of -(2-pyrazine)- carbonyl-L-phenylalanine-L-leucine boronic acid with D-mannitol
  • N-(2 ⁇ pyrazine)carbonyl-L-phenylalanine-L- leucine boronic acid was weighed into a container, and 16 mL of tert-bvAanol was added. The container was closed and the suspension was warmed to approximately 45 °C for 5 minutes to complete dissolution of the compound.
  • Water (24 mL) was added with stirring, followed by 0.4 g of mannitol, added as an excipient, 1% w/v. The mixture was stirred to complete dissolution and then cooled to ambient temperature. The solution was filtered through a 0.45 ⁇ m nylon membrane. One milliliter aliquots were placed in 5 mL serum bottles.
  • Split rubber stoppers were partially inserted into the bottles, and the bottles were placed in a freeze dryer with a shelf temperature of -45 °C. After approximately 1 hour, the vacuum was applied. The shelf temperature was allowed to rise gradually to -35 °C and maintained at -35 °C until the ice was gone from the samples (approximately 40 hours). The shelf temperature control was then turned off and the shelf temperature was allowed to gradually rise to 0 °C. A secondary drying cycle was carried out by increasing the shelf temperature in 3 increments to 25 °C over a time period of 1.5 hours. The shelf temperature was maintained at 25 °C for 2 hours. The samples were sealed under nitrogen and removed from the freeze dryer.
  • the residual moisture content of the samples was determined by Karl Fischer analysis, using three lyophilized products. The water content was 0.88% by weight.
  • FAB Fast Atom Bombardment
  • Example 2 Production-scale preparation of a lyophilized formulation of -(2- pyrazine)carbonyl-L-pheny ⁇ alanine-L-leucine boronic acid with
  • a solution of 97% fer/--butanol/3% Water for Injection was prepared by warming the required amount of ter i-butanol to 35 °C and adding Water for Injection. Approximately 5% of the solution was reserved for use in rinsing. The solution was cooled to 15-30 °C, and N-(2- pyrazine)carbonyl-L-phenylalanine-L-leucine boroxine was added with stirring. The container was rinsed with the reserved fert-butanol/water solution, and the rinses were added to the main vessel. The mixture was stirred until the boronic acid compound was completely dissolved. Mannitol was added, with residual mannitol being rinsed into the reaction vessel with fresh Water for Injection.
  • Sufficient Water for Injection was added to reduce the total alcohol content to 40% v/v.
  • the mixture was stirred until the mannitol was completely dissolved.
  • the mixture was filtered through a 0.22 micron filter. Aliquots of the filtered solution were placed into previously sterilized vials.
  • the vials were sealed with lyophilization stoppers and were placed on lyophilizer chamber shelves maintained at -45 °C. After two hours, the freeze dryer chamber was evacuated and the chamber pressure was adjusted to 100-200 microns with sterile nitrogen.
  • the lyophilizer chamber shelves were warmed to -30 °C using an appropriate ramp rate, and held at that temperature for 10-15 hours.
  • the shelf temperature was adjusted to -15 °C over 7 hours using an appropriate ramp rate and maintained at that temperature for 5 hours.
  • the shelf was warmed to 0 °C over a period of at least 7 hours using an appropriate ramp rate.
  • the shelf was warmed to 27 °C and maintained at that temperature for 4 hours.
  • the chamber pressure was restored using sterile nitrogen, and the vials were sealed and removed.
  • the mannitol boronate structure was confirmed by mass spectrometry (positive ion or electrospray, acetonitrile solution) and 13 C NMR.
  • the reaction mixture was partitioned with hexanes/methanol and the aqueous methanol layer was concentrated to afford a solid.
  • the solid was reconstituted with aqueous sodium hydroxide. After washing with dichloromethane, the aqueous layer was acidified with aqueous hydrochloric acid.
  • the product was extracted using dichloromethane. After drying with magnesium sulfate, the batch was filtered and the dichloromethane was removed under reduced pressure. Hexanes were added and crude product was isolated by further stripping of solvent.
  • the product was recrystallized from ethyl acetate, collected by filtration and dried under vacuum at 65 - 70°C. When the material was dry, it was packaged in amber glass bottles with teflon-lined caps, labeled, and stored at -20°C.
  • the product has the trimeric boroxine structure shown below, as supported by the results of mass spectrometry, H NMR, and elemental analysis.
  • the lyophilized formulation of N-(2-pyrazine)carbonyl-L-phenylalanine-L- leucine boronic acid with D-mannitol was prepared as described in Example 1.
  • One sample was reconstituted with 2 mL of water. Dissolution was complete within 1-2 minutes of shaking. The entire solution was transferred to a volumetric flask, diluted, and analyzed by HPLC for content of N-(2-pyrazine)carbonyl-L- phenylalanine-L-leucine boronic acid. The total drug content was 1.09 mg.
  • a second sample was reconstituted with 1 mL of propylene glycol:EtOH:H 2 0, 40:10:50. Dissolution was complete with 1 minute of shaking. The total drug content was 1.11 mg.
  • the lyophilized formulation was also reconstituted with 0.9% w/v saline.
  • the lyophilized material dissolved readily at concentrations up to 6 mg/mL.
  • solid ⁇ /-(2-pyrazine)carbonyl-L-phenylalanine-L-leucine boronic acid was not soluble in 0.9% w/v saline at a concentration of 1 mg/mL.
  • Sample Preparation Accurately weighed 0.5-1.5 mg portions of the sample or reference standard were dissolved in 2.00 mL of the internal standard solution.
  • ⁇ T and ⁇ W 1/2 are, respectively, the differences in retention times and the sum of the mid-width of the sample and internal standard peaks. Minor variation of the mobile phase is allowed to achieve results similar to those above.
  • N-(2-pyrazine)carbonyl-L-phenylalanine-L-leucine boronic acid was prepared as described in U.S. Pat. No. 5,780,454. The product was obtained as a white amorphous powder. The product was stable for more than 2 years when stored at -20 °C, as determined by HPLC analysis (purity >97%). When stored at 2-8 °C, the product was not stable for longer than 3-6 months. Liquid N-(2-pyrazine)carbonyl-L-phenylalanine-L-leucine boronic acid
  • a sterile liquid formulation (0.5 mg/mL) of -(2-pyrazine)carbonyl-L ⁇ phenylalanine-L-leucine boronic acid was prepared in 0.9% w/v saline, 2% v/v ethanol and 0.1% w/v ascorbic acid. When stored at 2-8 °C, the liquid formulation was not stable for longer than 6 months, as determined by HPLC analysis.
  • the lyophilized product was prepared according to Example 1 and stored at 5 °C, ambient temperature, 37 °C, and 50 °C. Stability was monitored for approximately 18 months by periodically reconstituting a sample and analyzing the entire contents of the bottle by HPLC. Over this time period, there was no loss of drug in the lyophilized product stored at any temperature and no evidence of degradation product peaks in the HPLC chromatograms.
  • the lyophilized product was prepared according to Example 1, and samples (2.5 mg/vial) were reconstituted with 2.5 mL of 0.9% w/v sterile saline. Dissolution was complete within 10 seconds and afforded a clear colorless solution containing 1 mg/mL of N-(2-pyrazine)carbonyl-L-phenylalanine-L- leucine boronic acid. The solution showed no sign of degradation when stored at ambient temperature (23 °C) for 43 hours. No special care was taken to protect the solution from light.

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