JP6863893B2 - 抗突然変異kras t細胞受容体 - Google Patents
抗突然変異kras t細胞受容体 Download PDFInfo
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Description
本特許出願は、2014年11月26日出願の米国仮特許出願第62/084,654号及び2015年6月5日出願の米国仮特許出願第62/171,321号(それぞれ、その全体が参照により本明細書に組み込まれる)の利益を主張する。
本明細書と同時提出され、且つ、以下の通り識別されるコンピューター可読のヌクレオチド/アミノ酸の配列表が、参照により、本明細書にその全体が組み込まれる:2015年11月20日付ファイル名「722261_ST25.txt」、231,164バイトのASCII(テキスト)ファイル1件。
ある種のがんは、特に、がんが転移性で切除不能になった場合、治療選択肢が非常に限られる場合がある。例えば、手術、化学療法、及び放射線療法等の治療の進歩にもかかわらず、例えば膵臓がん、結腸直腸がん、肺がん、子宮内膜がん、卵巣がん及び前立腺がん等の多くのがんの予後は、不良な場合がある。従って、がんに対するさらなる治療について、満たされていないニーズがある。
本発明の一実施形態は、突然変異エピトープに対し抗原特異性を有する、単離又は精製されたT細胞受容体(TCR)であって、突然変異エピトープが、(a)VVVGADGVGK(配列番号2)を含むか、又は(b)VVVGAVGVGK(配列番号33)若しくはVVGAVGVGK(配列番号35)から成る、TCRを提供する。
カーステン・ラット肉腫ウイルスがん遺伝子ホモログ(KRAS)(GTPase KRas、V−Ki−Ras2カーステン・ラット肉腫ウイルスがん遺伝子、又はKRAS2とも呼ばれる)は、低分子量GTPaseスーパーファミリーのメンバーである。KRASの2つの転写産物変異体:KRAS変異体A及びKRAS変異体Bが存在する。以降、「KRAS」(突然変異型又は非突然変異型)への言及は、別段の指定がない限り、変異型A及び変異型Bの両方を指す。特定の理論又はメカニズムには縛られないが、KRASは、突然変異した場合、多くのヒトがんの発がんにおいて、初期に、シグナル伝達に関与すると考えられている。単一のアミノ酸置換が突然変異を活性化し得る。活性化されると、突然変異KRASはグアノシン−5’−三リン酸(GTP)に結合し、GTPをグアノシン5’−二リン酸(GDP)に変換する。突然変異KRASタンパク質産物は、構成的に活性化され得る。突然変異KRASタンパク質は、例えば、膵臓がん(例、膵臓上皮がん(pancreatic carcinoma))、結腸直腸がん、肺がん(例、肺腺がん)、子宮内膜がん、卵巣がん(例、上皮性卵巣がん)及び前立腺がん等の様々なヒトのがんのいずれかにおいても発現し得る。
本実施例は、マウス抗KRAS7−16 G12D 10マー TCRの単離を実例で示す。
本実施例は、配列番号11を含むTCRα鎖及び配列番号12を含むTCRβ鎖を発現するよう形質導入したPBLが、HLA−A11+/G12D 10マー+の標的に対して反応性であることを実証する。
本実施例は、配列番号11を含むTCRα鎖及び配列番号12を含むTCRβ鎖で共形質導入したPBLが、HLA−A11+/G12D+の膵臓腫瘍細胞株FA6−2/A11に対して反応性であることを実証する。
本実施例は、TCRα鎖TRAV12N−3*01(配列番号11)及びTCRβ鎖TRBV4*01(配列番号12)をコードするレトロウイルスベクターで形質導入したPBLが、KRAS G12D 10マーペプチド(配列番号2)でパルスしたCOS7/A11細胞に対し、反応性を示すことを実証する。
本実施例は、TCRα鎖TRAV12N−3*01(配列番号11)及びTCRβ鎖TRBV4*01(配列番号12)をコードするレトロウイルスベクターで形質導入したPBLが、HLA−A11を発現する膵臓腫瘍株FA6−2/A11に対し、反応性を示すことを実証する。
本実施例は、マウス抗KRAS7−16 G12V 10マーTCRの単離を実例で示す。
本実施例は、(i)配列番号133を含むTCRα鎖及び配列番号134を含むTCRβ鎖、又は(ii)配列番号145を含むTCRα鎖及び配列番号146を含むTCRβを発現するよう形質導入したPBLが、HLA−A11+/G12V 10マー+の標的に対して反応性であることを実証する。
本実施例は、TRAV3−3*01/TRBV4*01マウス抗KRAS G12V TCR(配列番号133及び134)が、TRAV19*01/TRBV13−1*02マウス抗KRAS G12V TCR(配列番号145及び146)と比較して、パルスした標的ペプチドに対し、より高い親和性を有することを実証する。
本実施例は、TRAV3−3*01/TRBV4*01マウス抗KRAS G12V TCR(配列番号133及び134)が、HLA−A11+KRAS G12V+の膵臓腫瘍細胞株を認識することを実証する。
本実施例は、TRAV3−3*01/BV4*01マウス抗KRAS G12V TCR(配列番号133及び134)についての、IFN−γ産生と、突然変異KRAS発現との間の相関を実証する。
本実施例は、TRAV3−3*01/BV4*01マウス抗KRAS G12V TCR(配列番号133及び134)が、(i)CD4の存在下且つCD8の非存在下、又は(ii)CD8の存在下且つCD4の非存在下のいずれでも、突然変異KRASを認識することを実証する。
本実施例は、マウス抗KRAS7−16 G12D 10マーTCRの単離を実例で示す。
本実施例は、配列番号157を含むTCRα鎖及び配列番号158を含むTCRβ鎖を発現するよう形質導入したPBLが、HLA−A11+/G12D 10マー+の標的に対して反応性であることを実証する。
本実施例は、TRAV4−4*01(1)/TRBV12−2*01マウス抗KRAS G12D TCR(配列番号157及び158)について、IFN−γ産生と、突然変異KRAS発現との間の相関を実証する。
本実施例は、TRAV4−4/DV10*01/BV12−2*01マウス抗KRAS G12D TCR(配列番号157及び158)が、TRAV12N−3*01/BV4*01マウス抗KRAS G12D TCR(配列番号11及び12)と比較して、パルスした標的ペプチドに対し、より高い親和性を有することを実証する。
本実施例は、TRAV4−4/DV10*01/BV12−2*01マウス抗KRAS G12D TCR(配列番号157及び158)が、TRAV12N−3*01/BV4*01マウス抗KRAS G12D TCR(配列番号11及び12)と比較して、G12D+の膵臓腫瘍細胞株に対し、高い親和性を有することを実証する。
本実施例は、突然変異KRASを発現するがんの患者に、突然変異KRASを認識するマウスTCRをコードするベクターで形質導入したPBLを投与する、第I相/II相の研究を実例で示す。
・HLA−A11+の、突然変異KRAS発現腫瘍(免疫組織化学による測定で);
・放射性ヨウ素不応性がん;及び
・陽電子放射断層撮影(PET)陽性の腫瘍又は過去6ヶ月以内における腫瘍の進行の証明。
本実施例は、ヒトのがんにおけるKRAS突然変異の頻度を実例で示す。
本実施例は、TRAV4−4/DV10*01/BV12−2*01 TCRのCDR3α領域におけるグリシン残基の置換が、野生型TRAV4−4/DV10*01/BV12−2*01 TCRと比較して、抗KRAS反応性の増強をもたらすことを実証する。
Claims (21)
- 突然変異エピトープに対し抗原特異性を有する、単離又は精製されたT細胞受容体(TCR)であって、突然変異エピトープが、(a)VVVGADGVGK(配列番号2)を含むか、又は(b)VVVGAVGVGK(配列番号33)若しくはVVGAVGVGK(配列番号35)から成り、
TCRが、HLA−A11分子に関連して提示される突然変異エピトープに対し抗原特異性を有し、
及び
(a)配列番号3のアミノ酸配列を含むα鎖の相補性決定領域(CDR)1、配列番号4のアミノ酸配列を含むα鎖のCDR2、配列番号5のアミノ酸配列を含むα鎖のCDR3、配列番号6のアミノ酸配列を含むβ鎖のCDR1、配列番号7のアミノ酸配列を含むβ鎖のCDR2、及び配列番号8のアミノ酸配列を含むβ鎖のCDR3;
(b)配列番号125のアミノ酸配列を含むα鎖のCDR1、配列番号126のアミノ酸配列を含むα鎖のCDR2、配列番号127のアミノ酸配列を含むα鎖のCDR3、配列番号128のアミノ酸配列を含むβ鎖のCDR1、配列番号129のアミノ酸配列を含むβ鎖のCDR2、及び配列番号130のアミノ酸配列を含むβ鎖のCDR3;
(c)配列番号137のアミノ酸配列を含むα鎖のCDR1、配列番号138のアミノ酸配列を含むα鎖のCDR2、配列番号139のアミノ酸配列を含むα鎖のCDR3、配列番号140のアミノ酸配列を含むβ鎖のCDR1、配列番号141のアミノ酸配列を含むβ鎖のCDR2、及び配列番号142のアミノ酸配列を含むβ鎖のCDR3;
(d)配列番号149のアミノ酸配列を含むα鎖のCDR1、配列番号150のアミノ酸配列を含むα鎖のCDR2、配列番号151のアミノ酸配列を含むα鎖のCDR3、配列番号152のアミノ酸配列を含むβ鎖のCDR1、配列番号153のアミノ酸配列を含むβ鎖のCDR2、及び配列番号154のアミノ酸配列を含むβ鎖のCDR3;又は
(e)配列番号149のアミノ酸配列を含むα鎖のCDR1、配列番号150のアミノ酸配列を含むα鎖のCDR2、配列番号207のアミノ酸配列を含むα鎖のCDR3、配列番号152のアミノ酸配列を含むβ鎖のCDR1、配列番号153のアミノ酸配列を含むβ鎖のCDR2、及び配列番号154のアミノ酸配列を含むβ鎖のCDR3
を含む、TCR。 - (a)配列番号9のアミノ酸配列を含むα鎖の可変領域及び配列番号10のアミノ酸配列を含むβ鎖の可変領域;
(b)配列番号131のアミノ酸配列を含むα鎖の可変領域及び配列番号132のアミノ酸配列を含むβ鎖の可変領域;
(c)配列番号143のアミノ酸配列を含むα鎖の可変領域及び配列番号144のアミノ酸配列を含むβ鎖の可変領域;
(d)配列番号155のアミノ酸配列を含むα鎖の可変領域及び配列番号156のアミノ酸配列を含むβ鎖の可変領域;又は
(e)配列番号208のアミノ酸配列を含むα鎖の可変領域及び配列番号156のアミノ酸配列を含むβ鎖の可変領域
を含む、請求項1の単離又は精製されたTCR。 - (a)配列番号13のアミノ酸配列を含むα鎖の定常領域及び配列番号14のアミノ酸配列を含むβ鎖の定常領域;
(b)配列番号135のアミノ酸配列を含むα鎖の定常領域及び配列番号136のアミノ酸配列を含むβ鎖の定常領域;
(c)配列番号147のアミノ酸配列を含むα鎖の定常領域及び配列番号148のアミノ酸配列を含むβ鎖の定常領域;又は
(d)配列番号159のアミノ酸配列を含むα鎖の定常領域及び配列番号160のアミノ酸配列を含むβ鎖の定常領域
を更に含む、請求項1又は2の単離又は精製されたTCR。 - (a)配列番号11のアミノ酸配列を含むα鎖及び配列番号12のアミノ酸配列を含むβ鎖;
(b)配列番号133のアミノ酸配列を含むα鎖及び配列番号134のアミノ酸配列を含むβ鎖;
(c)配列番号145のアミノ酸配列を含むα鎖及び配列番号146のアミノ酸配列を含むβ鎖;
(d)配列番号157のアミノ酸配列を含むα鎖及び配列番号158のアミノ酸配列を含むβ鎖;又は
(e)配列番号209のアミノ酸配列を含むα鎖及び配列番号158のアミノ酸配列を含むβ鎖
を含む、請求項1〜3のいずれか1項の単離又は精製されたTCR。 - VVVGADGVGK(配列番号2)を含む突然変異エピトープに対し抗原特異性を有する、請求項1〜4のいずれか1項のTCR。
- VVVGAVGVGK(配列番号33)又はVVGAVGVGK(配列番号35)から成る突然変異エピトープに対し抗原特異性を有する、請求項1〜4のいずれか1項のTCR。
- 請求項1〜4のいずれか1項のTCRの機能的部分を含む単離又は精製されたポリペプチドであって、機能的部分が:
(i)配列番号3〜8のアミノ酸配列;
(ii)配列番号125〜130のアミノ酸配列;
(iii)配列番号137〜142のアミノ酸配列;
(iv)配列番号149〜154のアミノ酸配列;又は
(v)配列番号149〜150,207及び152〜154のアミノ酸配列
を含む、ポリペプチド。 - 請求項1〜4のいずれか1項のTCRの機能的部分を含む単離又は精製されたポリペプチドであって、機能的部分が:
(i)配列番号9及び10のアミノ酸配列;
(ii)配列番号131及び132のアミノ酸配列;
(iii)配列番号143及び144のアミノ酸配列;
(iv)配列番号155及び156のアミノ酸配列;又は
(v)配列番号208及び156のアミノ酸配列
を含む、ポリペプチド。 - 請求項1〜4のいずれか1項のTCRの機能的部分を含む単離又は精製されたポリペプチドであって、機能的部分が:
(i)配列番号11及び12のアミノ酸配列;
(ii)配列番号133及び134のアミノ酸配列;
(iii)配列番号145及び146のアミノ酸配列;
(iv)配列番号157及び158のアミノ酸配列;又は
(v)配列番号209及び158のアミノ酸配列
を含む、ポリペプチド。 - (a)配列番号3〜5のアミノ酸配列を含む第1のポリペプチド鎖及び配列番号6〜8のアミノ酸配列を含む第2のポリペプチド鎖;
(b)配列番号125〜127のアミノ酸配列を含む第1のポリペプチド鎖及び配列番号128〜130のアミノ酸配列を含む第2のポリペプチド鎖;
(c)配列番号137〜139のアミノ酸配列を含む第1のポリペプチド鎖及び配列番号140〜142のアミノ酸配列を含む第2のポリペプチド鎖;
(d)配列番号149〜151のアミノ酸配列を含む第1のポリペプチド鎖及び配列番号152〜154のアミノ酸配列を含む第2のポリペプチド鎖;又は
(e)配列番号149,150、及び207のアミノ酸配列を含む第1のポリペプチド鎖、及び配列番号152〜154のアミノ酸配列を含む第2のポリペプチド鎖
を含む、単離又は精製されたタンパク質。 - (a)配列番号9のアミノ酸配列を含む第1のポリペプチド鎖及び配列番号10のアミノ酸配列を含む第2のポリペプチド鎖;
(b)配列番号131のアミノ酸配列を含む第1のポリペプチド鎖及び配列番号132のアミノ酸配列を含む第2のポリペプチド鎖;
(c)配列番号143のアミノ酸配列を含む第1のポリペプチド鎖及び配列番号144のアミノ酸配列を含む第2のポリペプチド鎖;
(d)配列番号155のアミノ酸配列を含む第1のポリペプチド鎖及び配列番号156のアミノ酸配列を含む第2のポリペプチド鎖;又は
(e)配列番号208のアミノ酸配列を含む第1のポリペプチド鎖及び配列番号156のアミノ酸配列を含む第2のポリペプチド鎖
を含む、請求項10に記載の単離又は精製されたタンパク質。 - (a)配列番号11のアミノ酸配列を含む第1のポリペプチド鎖及び配列番号12のアミノ酸配列を含む第2のポリペプチド鎖;
(b)配列番号133のアミノ酸配列を含む第1のポリペプチド鎖及び配列番号134のアミノ酸配列を含む第2のポリペプチド鎖;
(c)配列番号145のアミノ酸配列を含む第1のポリペプチド鎖及び配列番号146のアミノ酸配列を含む第2のポリペプチド鎖;
(d)配列番号157のアミノ酸配列を含む第1のポリペプチド鎖及び配列番号158のアミノ酸配列を含む第2のポリペプチド鎖;又は
(e)配列番号209のアミノ酸配列を含む第1のポリペプチド鎖及び配列番号158のアミノ酸配列を含む第2のポリペプチド鎖
を含む、請求項10又は11の単離又は精製されたタンパク質。 - 請求項1〜6のいずれか1項に記載のTCR、請求項7〜9のいずれか1項に記載のポリペプチド、又は請求項10〜12のいずれか1項に記載のタンパク質をコードするヌクレオチド配列を含む、単離又は精製された核酸。
- 請求項13に記載の核酸を含む組換え発現ベクター。
- 請求項14の組換え発現ベクターを含む、単離された宿主細胞。
- 細胞がヒトのである、請求項15に記載の宿主細胞。
- 請求項15又は16の、少なくとも1つの宿主細胞を含む細胞集団。
- 請求項1〜6のいずれか1項に記載のTCR、請求項7〜9のいずれか1項に記載のポリペプチド、請求項10〜12のいずれか1項に記載のタンパク質、請求項13に記載の核酸、請求項14の組換え発現ベクター、請求項15若しくは16の宿主細胞、又は請求項17の細胞集団、及び医薬的に許容可能な担体を含む医薬組成物。
- 哺乳動物におけるがんを検出、治療又は予防するための医薬組成物であって、請求項1〜6のいずれか1項に記載のTCR、請求項7〜9のいずれか1項に記載のポリペプチド、請求項10〜12のいずれか1項に記載のタンパク質、請求項13に記載の核酸、請求項14の組換え発現ベクター、請求項15又は16の宿主細胞、又は請求項17の細胞集団を含む、医薬組成物。
- 哺乳動物におけるがんの存在を検出する方法であって
哺乳動物由来の1つ以上の細胞を含む試料と、請求項1〜6のいずれか1項に記載のTCR、請求項7〜9のいずれか1項に記載のポリペプチド、請求項10〜12のいずれか1項に記載のタンパク質、請求項13に記載の核酸、請求項14の組換え発現ベクター、請求項15又は16の宿主細胞、請求項17の細胞集団、又は請求項18の医薬組成物とを接触させることによって、複合体を形成すること、及び
複合体を検出すること
を含み、
複合体の検出が、哺乳動物におけるがんの存在を示す、方法。 - がんが、膵臓がん、結腸直腸がん、肺がん、子宮内膜がん、卵巣がん、又は前立腺がんである、請求項19の医薬組成物又は請求項20の方法。
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