WO2015194610A1 - 肺がんの検出キット又はデバイス及び検出方法 - Google Patents
肺がんの検出キット又はデバイス及び検出方法 Download PDFInfo
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Definitions
- the present invention relates to a lung cancer detection kit or device containing a nucleic acid capable of specifically binding to a specific miRNA, which is used for examining the presence or absence of lung cancer in a subject, and the nucleic acid.
- the present invention relates to a method for detecting lung cancer, comprising measuring the expression level of miRNA.
- Non-Patent Document 1 the estimated number of lung cancer cases in the United States in 2014 reaches 224,210 people, of which about 159,260 people die.
- Lung cancer has multiple types of tissue, and the remaining tissue type is called non-small cell lung cancer, whereas small cell lung cancer accounts for about 15%.
- Non-small cell lung cancer is further classified into three main categories: adenocarcinoma, squamous cell carcinoma, and large cell carcinoma. These tissue types vary greatly in the site of development, progression and speed, symptoms, etc., and the treatment methods are also different.
- Lung cancer progression is classified into stages 0-4 depending on the extent of tumor spread (T0, is, 1-4), lymph node metastasis (N0-3), and distant metastasis (M0, M1).
- T0 is, 1-4
- N0-3 lymph node metastasis
- M0 distant metastasis
- T1 has a maximum tumor diameter of 3 cm or less
- T2 exceeds 3 cm but not more than 7 cm
- T3 exceeds 7 cm or infiltration is observed in adjacent sites
- T4 is a size. Regardless of where the infiltrate extends to a wider adjacent site.
- the survival rate of lung cancer varies depending on the degree of progression. According to Non-Patent Document 1, the 5-year relative survival rate of non-small cell lung cancer is reported to be 45-49% in stage 1, 30-31% in stage 2, 5-14% in stage 3, and 1% in stage 4. ing. Therefore, if lung cancer can be detected and treated at an early stage, it will greatly contribute to the improvement of survival rate.
- Lung cancer is mainly treated for resection surgery, radiation therapy, and anticancer drug treatment.
- surgery can be applied to early lung cancer, and there is a high possibility of complete cure (Non-patent Document 1).
- Non-patent Document 1 For early-stage lung cancer, there are several treatment options, such as thoracoscopic surgery, trunk stereotactic radiotherapy (SBRT), photodynamic therapy, laser therapy, and a brachytherapy source that emits radiation from within the body.
- SBRT trunk stereotactic radiotherapy
- laser therapy a brachytherapy source that emits radiation from within the body.
- brachytherapy source that emits radiation from within the body.
- Treatment such as treatment that is less burdensome on the patient can also be applied (Non-Patent Document 1).
- Non-Patent Document 1 in addition to past medical history and physical examination, chest X-ray examination is most widely used for examining lung cancer.
- chest X-ray examination is most widely used for examining lung cancer.
- image diagnosis such as CT examination, MRI examination, and PET examination is performed.
- examinations using specimens include sputum cytology, pleural effusion examinations, and pathological examinations in which a cell or tissue is collected by inserting a needle into a lesion and examined with a microscope.
- CEA and CYFRA 21-1 are known as tumor markers for detecting lung cancer.
- Patent Document 1 discloses a method for detecting lung cancer and other lung diseases using miR-19b (miR-19b-3p) in serum.
- Patent Document 2 discloses a method for detecting lung cancer using miR-1268 or miR-1228 in serum or plasma.
- Patent Document 3 discloses a method for detecting lung cancer using miR-1307 in blood cells.
- An object of the present invention is to find a novel lung cancer tumor marker and provide a method capable of effectively detecting lung cancer using a nucleic acid capable of specifically binding to the marker.
- Chest X-ray examinations are becoming popular as a test for lung cancer, but the number of deaths due to lung cancer is increasing year by year, and the number of deaths by cancer site is the highest, so X-ray examinations are the most suitable for lung cancer. It is not always possible to suppress this.
- CT and MRI can detect lung cancer with high performance, they require special equipment and are expensive, and are not suitable for widespread use as primary tests. .
- CEA ⁇ ⁇ and CYFRA21-1 are known as blood tumor markers for detecting lung cancer (Non-patent Document 3), but their usefulness has not been established. There is no description about these markers in the guide (Non-Patent Document 1). According to Non-Patent Document 3, the general lung cancer detection sensitivity of these blood tumor markers is reported to be 69% for CEA and 43% for CYFRA 21-1. In addition, it is said that the presence or absence of lung cancer cannot be determined because tumor markers such as CEA and CYFRA 21-1 may increase for reasons other than lung cancer. If other cancers are mistakenly diagnosed as lung cancer, missed opportunities for appropriate treatment and improper medical care can impose unnecessary financial and physical burden on patients.
- microRNA microRNA
- Patent Document 1 discloses a method for detecting lung cancer and other lung diseases using miR-19b (miR-19b-3p) in serum.
- miR-19b miR-19b-3p
- the number of healthy specimens used as negative subjects is as small as a dozen cases, it is difficult to say that the universality of markers for differences between subjects is guaranteed, and it is not reliable as a method for detecting lung cancer .
- Patent Document 2 discloses a method for detecting lung cancer using miR-1268 or miR-1228 in serum or plasma, but only 3 cases of mesothelioma have been verified as cancers other than lung cancer. In addition, the possibility of a high false positive marker that can detect cancers other than lung cancer cannot be excluded.
- Patent Document 3 discloses a method for detecting lung cancer using miR-1307 in blood cells among blood cells, but another case in which a marker obtained using one case group is independent. Since it is not verified by group, it is not reliable as a method for verifying lung cancer.
- lung cancer is detected at an early stage, the possibility of surgical adaptation is high, and the survival rate can be greatly improved.
- there are multiple treatment options for early-stage lung cancer and there is a possibility that treatment with less burden on patients such as thoracoscopic surgery and trunk stereotactic radiotherapy may be applied, so it is highly sensitive to detect even low-grade lung cancer Lung cancer markers are anxious.
- the present inventors have found a plurality of genes that can be used as detection markers for lung cancer from blood that can be collected in a minimally invasive manner, and use nucleic acids that can specifically bind to these genes. Thus, it was found that lung cancer can be detected significantly, and the present invention has been completed.
- the present invention has the following features.
- Lung cancer markers miR-6768-5p, miR-6683-3p, miR-6678-5p, miR-3663-3p, miR-1908-3p, miR-6726-5p, miR-4258, miR- 1343-3p, miR-4516, miR-6875-5p, miR-4651, miR-6825-5p, miR-6840-3p, miR-6780b-5p, miR-6649-5p, miR-6863, miR-6784 5p, miR-3679-5p, miR-3184-5p, miR-663b, miR-6880-5p, miR-1908-5p, miR-92a-2-5p, miR-7975, miR-7110-5p, miR- 6842-5p, miR-6857-5p, miR-5572, mi -3197, miR-6131, miR-6889-5p, miR-
- miR-6768-5p is hsa-miR-6768-5p
- miR-6836-3p is hsa-miR-6636-3p
- miR-6786-5p is hsa-miR-6678-5p
- MiR-3663-3p is hsa-miR-3663-3p
- miR-1908-3p is hsa-miR-1908-3p
- miR-6726-5p is hsa-miR-6726-5p
- miR -4258 is hsa-miR-4258
- miR-1343-3p is hsa-miR-1343-3p
- miR-4516 is hsa-miR-4516
- miR-6875-5p is hsa-miR-6875 -5p
- miR-4651 is hsa-miR-4651
- miR-68 5-5p is hsa-miR-
- the kit specifically binds to at least one polynucleotide selected from the group consisting of miR-19b-3p, miR-1228-5p, and miR-1307-3p, which is another lung cancer marker.
- the kit according to any one of (1) to (3), further comprising a possible nucleic acid.
- miR-19b-3p is hsa-miR-19b-3p
- miR-1228-5p is hsa-miR-1228-5p
- miR-1307-3p is hsa-miR-1307-3p
- the kit is another lung cancer marker, miR-4271, miR-642b-3p, miR-6075, miR-6125, miR-887-3p, miR-6651-5p, miR-6863-5p, miR-3928-3p, miR-4443, miR-3648, miR-149-3p, miR-4689, miR-4763-3p, miR-6729-5p, miR-3196, miR-8069, miR-1268a, miR- 4739, miR-1268b, miR-5698, miR-6675-5p, miR-4507, miR-564, miR-4497, miR-6877-5p, miR-6087, miR-4731-5p, miR-615-5p, miR-760, miR-6891-5p, miR 6887-5p, miR-4525, miR-1914-3p, miR-619-5p, miR-5001-5p, miR-6722-3p, miR-3621, miR
- miR-4271 is hsa-miR-4271
- miR-642b-3p is hsa-miR-642b-3p
- miR-6075 is hsa-miR-6075
- miR-6125 is hsa-miR -6125
- miR-887-3p is hsa-miR-887-3p
- miR-6851-5p is hsa-miR-6851-5p
- miR-6673-5p is hsa-miR-6663-5p
- MiR-3828-3p is hsa-miR-3828-3p
- miR-4443 is hsa-miR-4443
- miR-3648 is hsa-miR-3648
- miR-149-3p is hsa -MiR-149-3p
- miR-4689 is hsa-miR-4689 MiR-4763-3p is hsa
- kits At least two or more nucleic acids that the kit can specifically bind to each of at least two or more polynucleotides selected from the group consisting of all lung cancer markers according to (1) or (2)
- miR-6768-5p is hsa-miR-6768-5p
- miR-6836-3p is hsa-miR-6636-3p
- miR-6678-5p is hsa-miR-6678-5p
- MiR-3663-3p is hsa-miR-3663-3p
- miR-1908-3p is hsa-miR-1908-3p
- miR-6726-5p is hsa-miR-6726-5p
- miR -4258 is hsa-miR-4258
- miR-1343-3p is hsa-miR-1343-3p
- miR-4516 is hsa-miR-4516
- miR-6875-5p is hsa-miR-6875 -5p
- miR-4651 is hsa-miR-4651
- miR-6 25-5p is hsa-miR-68
- miR-3180 is hsa-miR-3180
- miR-4442 is hsa-miR-4442
- miR-4792 is hsa-miR-4792
- miR-6721-5p is hsa-miR -6721-5p
- miR-6798-5p is hsa-miR-6798-5p
- miR-3162-5p is hsa-miR-3162-5p
- miR-6126 is hsa-miR-6126
- MiR-4758-5p is hsa-miR-4758-5p
- miR-2392 is hsa-miR-2392
- miR-486-3p is hsa-miR-486-3p
- miR-6727-5p Is hsa-miR-6727-5p and miR-4728-5p is hsa-m iR-4728-5p
- the device specifically binds to at least one polynucleotide selected from the group consisting of miR-19b-3p, miR-1228-5p, and miR-1307-3p, which is another lung cancer marker.
- the device according to any one of (11) to (13), further comprising a possible nucleic acid.
- miR-19b-3p is hsa-miR-19b-3p
- miR-1228-5p is hsa-miR-1228-5p
- miR-1307-3p is hsa-miR-1307-3p
- the device is another lung cancer marker, miR-4271, miR-642b-3p, miR-6075, miR-6125, miR-887-3p, miR-6651-5p, miR-6673-5p, miR-3928-3p, miR-4443, miR-3648, miR-149-3p, miR-4469, miR-4763-3p, miR-6729-5p, miR-3196, miR-8069, miR-1268a, miR- 4739, miR-1268b, miR-5698, miR-6675-5p, miR-4507, miR-564, miR-4497, miR-6877-5p, miR-6087, miR-4731-5p, miR-615-5p, miR-760, miR-6891-5p, m R-6887-5p, miR-4525, miR-1914-3p, miR-619-5p, miR-5001-5p, miR-6722-3p, miR-3621,
- miR-4271 is hsa-miR-4271
- miR-642b-3p is hsa-miR-642b-3p
- miR-6075 is hsa-miR-6075
- miR-6125 is hsa-miR -6125
- miR-887-3p is hsa-miR-887-3p
- miR-6851-5p is hsa-miR-6851-5p
- miR-6673-5p is hsa-miR-6663-5p
- MiR-3828-3p is hsa-miR-3828-3p
- miR-4443 is hsa-miR-4443
- miR-3648 is hsa-miR-3648
- miR-149-3p is hsa -MiR-149-3p
- miR-4689 is hsa-miR-4689 MiR-4763-3-3p is hs
- the device includes at least two or more nucleic acids capable of specifically binding to each of at least two or more polynucleotides selected from all lung cancer markers according to (11) or (12). (11) The device according to any one of (21).
- polynucleotide is used for nucleic acids including RNA, DNA, and RNA / DNA (chimera).
- the DNA includes any of cDNA, genomic DNA, and synthetic DNA.
- the RNA includes total RNA, mRNA, rRNA, miRNA, siRNA, snoRNA, snRNA, non-coding RNA and synthetic RNA.
- synthetic DNA and “synthetic RNA” are artificially generated using, for example, an automatic nucleic acid synthesizer based on a predetermined base sequence (which may be either a natural sequence or a non-natural sequence). It refers to the prepared DNA and RNA.
- non-natural sequence is intended to be used in a broad sense, and is a sequence (for example, including one or more nucleotide substitutions, deletions, insertions and / or additions) that differs from the natural sequence. That is, it includes a mutant sequence), a sequence containing one or more modified nucleotides (ie, a modified sequence), and the like.
- the polynucleotide is used interchangeably with the nucleic acid.
- a “fragment” is a polynucleotide having a base sequence of a continuous part of a polynucleotide, and desirably has a length of 15 bases or more, preferably 17 bases or more, more preferably 19 bases or more. .
- RNA and double-stranded DNA include not only RNA and double-stranded DNA, but also each single-stranded DNA such as positive strand (or sense strand) or complementary strand (or antisense strand) constituting the same. It is intended to be used.
- the length is not particularly limited.
- “gene” refers to double-stranded DNA containing human genomic DNA, single-stranded DNA containing cDNA (positive strand), and single-stranded DNA having a sequence complementary to the positive strand.
- DNA complementary strand
- miRNA microRNA
- transcripts fragments thereof, and transcripts are all included.
- the “gene” is not limited to a “gene” represented by a specific nucleotide sequence (or sequence number), but also RNAs having biological functions equivalent to RNA encoded by these, for example, homologs (ie, homologs). Or orthologs), variants such as genetic polymorphisms, and “nucleic acids” encoding derivatives.
- nucleic acid encoding such homologue, variant or derivative is, for example, the base sequence represented by any of SEQ ID NOs: 1 to 618 under the stringent conditions described later, or the base A “nucleic acid” having a base sequence that hybridizes with a complementary sequence of a base sequence in which u is t in the sequence can be mentioned.
- the “gene” does not ask whether the functional region is different, and may include, for example, an expression control region, a coding region, an exon, or an intron. Further, the “gene” may be contained in the cell, may be released outside the cell and may be present alone, or may be encapsulated in a vesicle called an exosome.
- exosome is a vesicle encapsulated in a lipid bilayer secreted from a cell. Exosomes are derived from multivesicular endosomes, and when released to the extracellular environment, they may contain biological substances such as “genes” such as RNA and DNA and proteins. It is known that exosomes are contained in body fluids such as blood, serum, plasma and lymph. In addition, “exosome” may be generally called “exosome”.
- RNA refers to RNA synthesized using a DNA sequence of a gene as a template.
- RNA is synthesized in such a manner that RNA polymerase binds to a site called a promoter located upstream of the gene and ribonucleotides are bound to the 3 'end so as to be complementary to the DNA base sequence.
- This RNA includes not only the gene itself but also the entire sequence from the transcription start point to the end of the poly A sequence, including the expression control region, coding region, exon or intron.
- microRNA is a protein complex that is transcribed as a hairpin-like RNA precursor, cleaved by a dsRNA cleaving enzyme having RNase III cleaving activity, and called RISC. 15-25 base non-coding RNA that is incorporated into and is involved in the translational repression of mRNA.
- miRNA is not limited to “miRNA” represented by a specific nucleotide sequence (or sequence number), but also a precursor of the “miRNA” (pre-miRNA, pri-miRNA), and these And miRNAs that have equivalent biological functions, such as homologs (ie, homologs or orthologs), variants such as genetic polymorphisms, and derivatives. Such precursors, homologues, mutants or derivatives can be specifically identified by miRBase release 20 (http://www.mirbase.org/) under stringent conditions described later. And “miRNA” having a base sequence that hybridizes with a complementary sequence of any one of the specific base sequences represented by any of SEQ ID NOs: 1 to 618.
- miRNA used herein may be a gene product of a miR gene, and such a gene product is a mature miRNA (for example, 15 to 15 involved in the suppression of translation of mRNA as described above). 25-base, or 19-25 base non-coding RNA) or miRNA precursors (eg, pre-miRNA or pri-miRNA as described above).
- the “probe” includes a polynucleotide used for specifically detecting RNA produced by gene expression or a polynucleotide derived therefrom and / or a polynucleotide complementary thereto.
- the “primer” includes a polynucleotide that specifically recognizes and amplifies RNA generated by gene expression or a polynucleotide derived therefrom and / or a polynucleotide complementary thereto.
- a complementary polynucleotide is a polynucleotide comprising a base sequence defined by any of SEQ ID NOs: 1 to 618 or a base sequence in which u is t in the base sequence.
- the base sequence is complementary to the full-length sequence or a partial sequence thereof (for convenience, this is referred to as the positive strand) based on the base pair relationship such as A: T (U), G: C.
- such a complementary strand is not limited to the case where it forms a completely complementary sequence with the target positive strand base sequence, but has a complementary relationship that allows hybridization with the target normal strand under stringent conditions. There may be.
- stringent conditions refers to the degree to which a nucleic acid probe is larger than other sequences (for example, the average of background measurement values + standard error of background measurement values ⁇ 2 or more measurement values) The conditions for hybridizing to the target sequence. Stringent conditions are sequence-dependent and depend on the environment in which hybridization is performed. By controlling the stringency of the hybridization and / or wash conditions, target sequences that are 100% complementary to the nucleic acid probe can be identified. Specific examples of “stringent conditions” will be described later.
- the “Tm value” means a temperature at which the double-stranded portion of the polynucleotide is denatured into a single strand and the double strand and the single strand are present at a ratio of 1: 1.
- variant refers to a natural variant caused by polymorphism, mutation, etc., or any nucleotide sequence of SEQ ID NOs: 1 to 618, or u in the nucleotide sequence in the case of nucleic acid.
- a variant comprising a deletion, substitution, addition or insertion of 1, 2 or 3 or more bases in the base sequence of t, or a partial sequence thereof, or a precursor RNA of any sequence of SEQ ID NOs: 1 to 618 (Premature miRNA) base sequence, a base sequence in which u is t in the base sequence, or a variant containing a deletion, substitution, addition or insertion of one or more bases in the partial sequence, or the base sequence
- a variant showing about 90% or more, about 95% or more, about 97% or more, about 98% or more, about 99% or more identity with each or a partial sequence thereof, or It refers to a polynucleotide or a nucleic acid which hybridises under stringent conditions of oligonucleotides as previously defined comprising a base sequence or a partial sequence thereof.
- “several” means an integer of about 10, 9, 8, 7, 6, 5, 4, 3 or 2.
- a mutant can be prepared using a well-known technique such as site-directed mutagenesis or PCR-based mutagenesis.
- identity can be determined using the above-mentioned BLAST or FASTA protein or gene search system, with or without introducing a gap (Zheng Zhang et al., 2000). Year, J. Comput. Biol., 7, p 203-214; Altschul, SF et al., 1990, Journal of Molecular Biology, 215, p 403-410; Proc. Natl. Acad. Sci. U.S.A., vol. 85, p2444-448).
- the term “derivative” refers to a modified nucleic acid, a non-limiting group such as a labeled derivative such as a fluorophore, a modified nucleotide (for example, a halogen, an alkyl such as methyl, an alkoxy such as methoxy, a group such as thio, carboxymethyl, etc.
- a derivative containing PNA peptide nucleic acid; Nielsen, PE, etc.
- the “nucleic acid” capable of specifically binding to a polynucleotide selected from the above-mentioned lung cancer marker miRNA is a synthesized or prepared nucleic acid, specifically, “nucleic acid probe” or “primer”.
- nucleic acid probe or “primer”.
- it is directly or indirectly used for screening candidate substances useful for prevention, improvement or treatment of lung cancer.
- nucleotides, oligonucleotides and polynucleotides that can be made. These nucleotides, oligonucleotides and polynucleotides are used as probes for detecting the gene expressed in vivo, in tissues or cells based on the above properties, and for amplifying the gene expressed in vivo. It can be effectively used as a primer.
- the term “detection” can be replaced by the term inspection, measurement, detection or decision support. Further, in this specification, the term “evaluation” is used in a meaning including supporting diagnosis or evaluation based on a test result or a measurement result.
- subject includes humans, primates including chimpanzees, pet animals such as dogs and cats, livestock animals such as cows, horses, sheep and goats, rodents such as mice and rats, etc. Means a mammal.
- healthy body also means an animal that is such a mammal and does not suffer from the cancer to be detected.
- P or “P value” refers to the probability that, in a statistical test, a statistic more extreme than the statistic actually calculated from the data under the null hypothesis is observed. Indicates. Therefore, it can be considered that the smaller the “P” or “P value”, the more significant the difference between the comparison objects.
- sensitivity means a value of (number of true positives) / (number of true positives + number of false negatives). High sensitivity makes it possible to detect lung cancer at an early stage, leading to complete resection of cancer and a reduction in recurrence rate.
- specificity means (number of true negatives) / (number of true negatives + number of false positives). If the specificity is high, it is possible to prevent unnecessary additional tests by misidentifying a healthy body as a lung cancer patient, thereby reducing the burden on the patient and medical costs.
- accuracy means a value of (number of true positives + number of true negatives) / (number of all cases). The accuracy indicates the rate at which the discrimination results for all the samples are correct, and is a first index for evaluating the detection performance.
- the “specimen” to be determined, detected or diagnosed refers to tissues and biomaterials in which the expression of the gene of the present invention changes as lung cancer occurs, lung cancer progresses, and the therapeutic effect on lung cancer is exhibited.
- pulmonary tissue and surrounding vessels, lymph nodes and organs, organs suspected of metastasis, skin, and body fluids such as blood, urine, saliva, sweat, and tissue exudate, and serum and plasma prepared from blood Others include stool and hair.
- it refers to a biological sample extracted from these, specifically genes such as RNA and miRNA.
- hsa-miR-6768-5p gene or “hsa-miR-6768-5p” refers to the hsa-miR-6768-5p gene described in SEQ ID NO: 1 (miRBase Accession No. MIMAT0027436) and other species homologs or orthologs.
- the hsa-miR-6768-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6768-5p” is known as “hsa-mir-6768” (miRBase Accession No. MI0022613, SEQ ID NO: 175) having a hairpin-like structure as a precursor.
- hsa-miR-6836-3p gene or “hsa-miR-6836-3p” refers to the hsa-miR-6636-3p gene (miRBase Accession No. 2) described in SEQ ID NO: 2. MIMAT0027575) and other species homologs or orthologs.
- the hsa-miR-6836-3p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6836-3p “hsa-mir-6836” (miRBase Accession No. MI0022682, SEQ ID NO: 176) having a hairpin-like structure as a precursor is known.
- hsa-miR-6782-5p gene or “hsa-miR-6782-5p” refers to the hsa-miR-6782-5p gene described in SEQ ID NO: 3 (miRBase Accession No. MIMAT0027464) and other species homologs or orthologs.
- the hsa-miR-6782-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6782-5p” is known as “hsa-mir-6782” (miRBase Accession No. MI0022627, SEQ ID NO: 177) having a hairpin-like structure as a precursor.
- hsa-miR-3663-3p gene or “hsa-miR-3663-3p” refers to the hsa-miR-3663-3p gene (miRBase Accession No. 4) described in SEQ ID NO: 4. MIMAT0018085) and other species homologs or orthologs.
- the hsa-miR-3663-3p gene can be obtained by the method described in Liao JY et al., 2010, PLoS One, 5, e10563.
- “hsa-miR-3663-3p” is known as “hsa-mir-3663” (miRBase Accession No. MI0016064, SEQ ID NO: 178) having a hairpin-like structure as a precursor.
- hsa-miR-1908-3p gene or “hsa-miR-1908-3p” refers to the hsa-miR-1908-3p gene (miRBase Accession No. 5) described in SEQ ID NO: 5. MIMAT0026916) and other species homologs or orthologs.
- the hsa-miR-1908-3p gene can be obtained by the method described in Bar M, et al., 2008, Stem Cells, 26, p2496-2505.
- “hsa-miR-1908-3p” is known as “hsa-mir-1908” (miRBase Accession No. MI0008329, SEQ ID NO: 179) having a hairpin-like structure as a precursor.
- hsa-miR-6726-5p gene or “hsa-miR-6726-5p” refers to the hsa-miR-6726-5p gene (miRBase Accession No. 6) described in SEQ ID NO: 6. MIMAT0027353) and other species homologs or orthologs.
- the hsa-miR-6726-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6726-5p “hsa-mir-6726” (miRBase Accession No. MI0022571, SEQ ID NO: 180) having a hairpin-like structure as a precursor is known.
- hsa-miR-4258 gene or “hsa-miR-4258” refers to the hsa-miR-4258 gene (miRBase Accession No. MIMAT0016879) described in SEQ ID NO: 7 and other biological species. Includes homologs or orthologs.
- the hsa-miR-4258 gene can be obtained by the method described in Goff LA et al., 2009, PLoS One, Vol. 4, e7192.
- hsa-miR-4258 “hsa-mir-4258” (miRBase Accession No. MI0015857, SEQ ID NO: 181) having a hairpin-like structure as a precursor is known.
- hsa-miR-1343-3p gene or “hsa-miR-1343-3p” refers to the hsa-miR-1343-3p gene described in SEQ ID NO: 8 (miRBase Accession No. MIMAT0019776) and other species homologs or orthologs.
- the hsa-miR-1343-3p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- hsa-miR-1343-3p “hsa-mir-1343” (miRBase Accession No. MI0017320, SEQ ID NO: 182) having a hairpin-like structure as a precursor is known.
- hsa-miR-4516 gene or “hsa-miR-4516” refers to the hsa-miR-4516 gene (miRBase Accession No. MIMAT0019053) described in SEQ ID NO: 9 or other biological species. Includes homologs or orthologs.
- the hsa-miR-4516 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-mir-4516 (miRBase Accession No. MI0016882, SEQ ID NO: 183) having a hairpin-like structure as a precursor is known.
- hsa-miR-6875-5p gene or “hsa-miR-6875-5p” refers to the hsa-miR-6875-5p gene described in SEQ ID NO: 10 (miRBase Accession No. MIMAT0027650) and other species homologs or orthologs.
- the hsa-miR-6875-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6875-5p “hsa-mir-6875” (miRBase Accession No. MI0022722, SEQ ID NO: 184) having a hairpin-like structure as a precursor is known.
- hsa-miR-4651 gene or “hsa-miR-4651” refers to the hsa-miR-4651 gene (miRBase Accession No. MIMAT0019715) described in SEQ ID NO: 11 and other biological species. Includes homologs or orthologs.
- the hsa-miR-4651 gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4651” is known as “hsa-mir-4651” (miRBase Accession No. MI0017279, SEQ ID NO: 185) having a hairpin-like structure as a precursor.
- hsa-miR-6825-5p gene or “hsa-miR-6825-5p” refers to the hsa-miR-6825-5p gene described in SEQ ID NO: 12 (miRBase Accession No. MIMAT0027550) and other species homologs or orthologs.
- the hsa-miR-6825-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6825-5p” is known as “hsa-mir-6825” (miRBase Accession No. MI0022670, SEQ ID NO: 186) having a hairpin-like structure as a precursor.
- hsa-miR-6840-3p gene or “hsa-miR-6840-3p” refers to the hsa-miR-6840-3p gene described in SEQ ID NO: 13 (miRBase Accession No. MIMAT0027583) and other species homologs or orthologs.
- the hsa-miR-6840-3p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6840-3p” is known as “hsa-mir-6840” (miRBase Accession No. MI0022686, SEQ ID NO: 187) having a hairpin-like structure as a precursor.
- hsa-miR-6780b-5p gene or “hsa-miR-6780b-5p” refers to the hsa-miR-6780b-5p gene described in SEQ ID NO: 14 (miRBase Accession No. MIMAT0027572) and other species homologs or orthologs.
- the hsa-miR-6780b-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6780b-5p” is known as “hsa-mir-6780b” (miRBase Accession No. MI0022681, SEQ ID NO: 188) having a hairpin-like structure as a precursor.
- hsa-miR-6749-5p gene or “hsa-miR-6749-5p” refers to the hsa-miR-6749-5p gene described in SEQ ID NO: 15 (miRBase Accession No. MIMAT0027398) and other species homologs or orthologs.
- the hsa-miR-6749-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6749-5p” is known as “hsa-mir-6749” (miRBase Accession No. MI0022594, SEQ ID NO: 189) having a hairpin-like structure as a precursor.
- hsa-miR-8063 gene or “hsa-miR-8063” refers to the hsa-miR-8063 gene (miRBase Accession No. MIMAT0030990) described in SEQ ID NO: 16 or other biological species. Includes homologs or orthologs.
- the hsa-miR-8063 gene can be obtained by the method described in Wang HJ et al., 2013, Shock, Vol. 39, p480-487.
- hsa-miR-8063 “hsa-mir-8063” (miRBase Accession No. MI0025899, SEQ ID NO: 190) having a hairpin-like structure as a precursor is known.
- hsa-miR-6784-5p gene or “hsa-miR-6784-5p” refers to the hsa-miR-6784-5p gene described in SEQ ID NO: 17 (miRBase Accession No. MIMAT0027468) and other species homologs or orthologs.
- the hsa-miR-6784-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6784-5p” is known as “hsa-mir-6784” (miRBase Accession No. MI0022629, SEQ ID NO: 191) having a hairpin-like structure as a precursor.
- hsa-miR-3679-5p gene or “hsa-miR-3679-5p” refers to the hsa-miR-3679-5p gene described in SEQ ID NO: 18 (miRBase Accession No. MIMAT0018104) and other species homologs or orthologs.
- the hsa-miR-3679-5p gene can be obtained by the method described in Creighton CJ et al., 2010, PLoS One, 5, e9637.
- “hsa-miR-3679-5p” is known as “hsa-mir-3679” (miRBase Accession No. MI0016080, SEQ ID NO: 192) having a hairpin-like structure as a precursor.
- hsa-miR-3184-5p gene or “hsa-miR-3184-5p” refers to the hsa-miR-3184-5p gene described in SEQ ID NO: 19 (miRBase Accession No. MIMAT0015064) and other species homologs or orthologs.
- the hsa-miR-3184-5p gene can be obtained by the method described in Stark MS et al., 2010, PLoS One, 5, e9685.
- “hsa-miR-3184-5p” is known as “hsa-mir-3184” (miRBase Accession No. MI0014226, SEQ ID NO: 193) having a hairpin-like structure as a precursor.
- hsa-miR-663b gene or “hsa-miR-663b” refers to the hsa-miR-663b gene (miRBase Accession No. MIMAT0005867) described in SEQ ID NO: 20 or other biological species. Includes homologs or orthologs.
- the hsa-miR-663b gene can be obtained by the method described in Takada S et al., 2008, Leukemia, Vol. 22, p1274-1278.
- hsa-miR-663b is known as “hsa-mir-663b” (miRBase Accession No. MI0006336, SEQ ID NO: 194) having a hairpin-like structure as a precursor.
- hsa-miR-6880-5p gene or “hsa-miR-6880-5p” refers to the hsa-miR-6880-5p gene described in SEQ ID NO: 21 (miRBase Accession No. MIMAT0027660) and other species homologs or orthologs.
- the hsa-miR-6880-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6880-5p” is known as “hsa-mir-6880” (miRBase Accession No. MI0022727, SEQ ID NO: 195) having a hairpin-like structure as a precursor.
- hsa-miR-1908-5p gene or “hsa-miR-1908-5p” refers to the hsa-miR-1908-5p gene (miRBase Accession No. MIMAT0007881) and other species homologs or orthologs.
- the hsa-miR-1908-5p gene can be obtained by the method described in Bar M et al., 2008, Stem Cells, 26, p2496-2505.
- hsa-miR-1908-5p “hsa-mir-1908” (miRBase Accession No. MI0008329, SEQ ID NO: 179) having a hairpin-like structure as a precursor is known.
- hsa-miR-92a-2-5p gene or “hsa-miR-92a-2-5p” refers to the hsa-miR-92a-2-5p described in SEQ ID NO: 23. It includes genes (miRBase Accession No. MIMAT0004508) and other species homologues or orthologues.
- the hsa-miR-92a-2-5p gene can be obtained by the method described in Murelatos Z et al., 2002, Genes Dev, 16, p720-728.
- “hsa-miR-92a-2-5p” is known as “hsa-mir-92a-2” (miRBase Accession No. MI00000094, SEQ ID NO: 196) having a hairpin-like structure as a precursor.
- hsa-miR-7975 gene or “hsa-miR-7975” refers to the hsa-miR-7975 gene (miRBase Accession No. MIMAT0031178) described in SEQ ID NO: 24 and other biological species. Includes homologs or orthologs.
- the hsa-miR-7975 gene can be obtained by the method described in Velthut-Meikas A et al., 2013, Mol Endocrinol, online version.
- hsa-miR-7975 is known as “hsa-mir-7975” (miRBase Accession No. MI0025751, SEQ ID NO: 197) having a hairpin-like structure as a precursor.
- hsa-miR-7110-5p gene or “hsa-miR-7110-5p” refers to the hsa-miR-7110-5p gene described in SEQ ID NO: 25 (miRBase Accession No. MIMAT0028117) and other species homologs or orthologs.
- the hsa-miR-7110-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-7110-5p “hsa-mir-7110” (miRBase Accession No. MI0022961, SEQ ID NO: 198) having a hairpin-like structure as a precursor is known.
- hsa-miR-6842-5p gene or “hsa-miR-6842-5p” refers to the hsa-miR-6842-5p gene described in SEQ ID NO: 26 (miRBase Accession No. MIMAT0027586) and other species homologs or orthologs.
- the hsa-miR-6842-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6842-5p “hsa-mir-6842” (miRBase Accession No. MI0022688, SEQ ID NO: 199) having a hairpin-like structure as a precursor is known.
- hsa-miR-6857-5p gene or “hsa-miR-6857-5p” refers to the hsa-miR-6857-5p gene described in SEQ ID NO: 27 (miRBase Accession No. MIMAT0027614) and other species homologs or orthologs.
- the hsa-miR-6857-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6857-5p “hsa-mir-6857” (miRBase Accession No. MI0022703, SEQ ID NO: 200) having a hairpin-like structure as a precursor is known.
- hsa-miR-5572 gene or “hsa-miR-5572” refers to the hsa-miR-5572 gene (miRBase Accession No. MIMAT0022260) described in SEQ ID NO: 28 or other biological species. Includes homologs or orthologs.
- the hsa-miR-5572 gene can be obtained by the method described in Tandon M, et al., 2012, Oral Dis, 18, p127-131.
- hsa-miR-5572 “hsa-mir-5572” (miRBase Accession No. MI0019117, SEQ ID NO: 201) having a hairpin-like structure as a precursor is known.
- hsa-miR-3197 gene or “hsa-miR-3197” refers to the hsa-miR-3197 gene (miRBase Accession No. MIMAT0015082) described in SEQ ID NO: 29 or other species. Includes homologs or orthologs.
- the hsa-miR-3197 gene can be obtained by the method described in Stark MS et al., 2010, PLoS One, 5, e9685.
- hsa-miR-3197 “hsa-mir-3197” (miRBase Accession No. MI0014245, SEQ ID NO: 202) having a hairpin-like structure as a precursor is known.
- hsa-miR-6131 gene or “hsa-miR-6131” refers to the hsa-miR-6131 gene (miRBase Accession No. MIMAT0024615) described in SEQ ID NO: 30 and other biological species. Includes homologs or orthologs.
- the hsa-miR-6131 gene can be obtained by the method described in Dannemann M et al., 2012, Genome Biol Evol, Vol. 4, p552-564.
- “hsa-miR-6131” is known as “hsa-mir-6131” (miRBase Accession No. MI0021276, SEQ ID NO: 203) having a hairpin-like structure as a precursor.
- hsa-miR-6889-5p gene or “hsa-miR-6889-5p” refers to the hsa-miR-6889-5p gene described in SEQ ID NO: 31 (miRBase Accession No. MIMAT0027678) and other species homologs or orthologs.
- the hsa-miR-6889-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6889-5p” is known as “hsa-mir-6889” (miRBase Accession No. MI0022736, SEQ ID NO: 204) having a hairpin-like structure as a precursor.
- hsa-miR-4454 gene or “hsa-miR-4454” refers to the hsa-miR-4454 gene (miRBase Accession No. MIMAT0018976) described in SEQ ID NO: 32 or other biological species. Includes homologs or orthologs.
- the hsa-miR-4454 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-mir-4454 (miRBase Accession No. MI0016800, SEQ ID NO: 205) having a hairpin-like structure as a precursor is known.
- hsa-miR-1199-5p gene or “hsa-miR-1199-5p” refers to the hsa-miR-1199-5p gene described in SEQ ID NO: 33 (miRBase Accession No. MIMAT0031119) and other species homologs or orthologs.
- the hsa-miR-1199-5p gene can be obtained by the method described in Salvi A et al., 2013, Int J Oncol, 42, p391-402.
- “hsa-miR-1199-5p” is known as “hsa-mir-1199” (miRBase Accession No. MI0020340, SEQ ID NO: 206) having a hairpin-like structure as a precursor.
- hsa-miR-1247-3p gene or “hsa-miR-1247-3p” refers to the hsa-miR-1247-3p gene (miRBase Accession No. MIMAT0022721) and other species homologs or orthologs.
- the hsa-miR-1247-3p gene can be obtained by the method described in Morin RD et al., 2008, Genome Res, 18, p610-621.
- “Hsa-miR-1247-3p” is known as “hsa-mir-1247” (miRBase Accession No. MI0006382, SEQ ID NO: 207) having a hairpin-like structure as a precursor.
- hsa-miR-6800-5p gene or “hsa-miR-6800-5p” refers to the hsa-miR-6800-5p gene described in SEQ ID NO: 35 (miRBase Accession No. MIMAT0027500) and other species homologs or orthologs.
- the hsa-miR-6800-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “Hsa-miR-6800-5p” is known as “hsa-mir-6800” (miRBase Accession No. MI0022645, SEQ ID NO: 208) having a hairpin-like structure as a precursor.
- hsa-miR-6872-3p gene or “hsa-miR-6872-3p” refers to the hsa-miR-6872-3p gene described in SEQ ID NO: 36 (miRBase Accession No. MIMAT0027645) and other species homologs or orthologs.
- the hsa-miR-6872-3p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6872-3p” is known as “hsa-mir-6872” (miRBase Accession No. MI0022719, SEQ ID NO: 209), which has a hairpin-like structure as a precursor.
- hsa-miR-4649-5p gene or “hsa-miR-4649-5p” refers to the hsa-miR-4649-5p gene described in SEQ ID NO: 37 (miRBase Accession No. MIMAT0019711) and other species homologs or orthologs.
- the hsa-miR-4649-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4649-5p” “hsa-mir-4649” (miRBase Accession No. MI0017276, SEQ ID NO: 210) having a hairpin-like structure as a precursor is known.
- hsa-miR-6791-5p gene or “hsa-miR-6791-5p” refers to the hsa-miR-6791-5p gene described in SEQ ID NO: 38 (miRBase Accession No. MIMAT0027482) and other species homologs or orthologs.
- the hsa-miR-6791-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6791-5p” is known as “hsa-mir-6791” (miRBase Accession No. MI0022636, SEQ ID NO: 211) having a hairpin-like structure as a precursor.
- hsa-miR-4433b-3p gene or “hsa-miR-4433b-3p” refer to the hsa-miR-4433b-3p gene described in SEQ ID NO: 39 (miRBase Accession No. MIMAT0030414) and other species homologs or orthologs.
- the hsa-miR-4433b-3p gene can be obtained by the method described in Ple H et al., 2012, PLoS One, Vol. 7, e50746.
- “hsa-miR-4433b-3p” is known as “hsa-mir-4433b” (miRBase Accession No. MI0025511, SEQ ID NO: 212) having a hairpin-like structure as a precursor.
- hsa-miR-3135b gene or “hsa-miR-3135b” refers to the hsa-miR-3135b gene (miRBase Accession No. MIMAT0018985) described in SEQ ID NO: 40 or other biological species. Includes homologs or orthologs.
- the hsa-miR-3135b gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-mir-3135b miRBase Accession No. MI0016809, SEQ ID NO: 213 having a hairpin-like structure as a precursor is known.
- hsa-miR-128-2-5p gene or “hsa-miR-128-2-5p” refers to the hsa-miR-128-2-5p described in SEQ ID NO: 41. It includes genes (miRBase Accession No. MIMAT0031095) and other species homologs or orthologs.
- the hsa-miR-128-2-5p gene can be obtained by the method described in Lagos-Quintana M et al., 2002, Curr Biol, Vol. 12, p735-739.
- “hsa-miR-128-2-5p” is known as “hsa-mir-128-2” (miRBase Accession No. MI000027, SEQ ID NO: 214) having a hairpin-like structure as a precursor.
- hsa-miR-4675 gene or “hsa-miR-4675” refers to the hsa-miR-4675 gene (miRBase Accession No. MIMAT0019757) described in SEQ ID NO: 42 or other biological species. Includes homologs or orthologs.
- the hsa-miR-4675 gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- hsa-miR-4675 “hsa-mir-4675” (miRBase Accession No. MI0017306, SEQ ID NO: 215) having a hairpin-like structure as a precursor is known.
- hsa-miR-4472 gene or “hsa-miR-4472” refers to the hsa-miR-4472 gene (miRBase Accession No. MIMAT0018999) described in SEQ ID NO: 43 or other biological species. Includes homologs or orthologs.
- the hsa-miR-4472 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- “hsa-miR-4472” has “hsa-mir-4472-1, hsa-mir-4472-2” (miRBase Accession No. MI0016823, MI0016824, SEQ ID NO: 216, which takes a hairpin-like structure as a precursor thereof. 217) is known.
- hsa-miR-6785-5p gene or “hsa-miR-6785-5p” refers to the hsa-miR-6785-5p gene described in SEQ ID NO: 44 (miRBase Accession No. MIMAT0027470) and other species homologs or orthologs.
- the hsa-miR-6785-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6785-5p” is known as “hsa-mir-6785” (miRBase Accession No. MI0022630, SEQ ID NO: 218) having a hairpin-like structure as a precursor.
- hsa-miR-6741-5p gene or “hsa-miR-6741-5p” refers to the hsa-miR-6741-5p gene described in SEQ ID NO: 45 (miRBase Accession No. MIMAT0027383) and other species homologs or orthologs.
- the hsa-miR-6741-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6741-5p” is known as “hsa-mir-6741” (miRBase Accession No. MI0022586, SEQ ID NO: 219) having a hairpin-like structure as a precursor.
- hsa-miR-7777 gene or “hsa-miR-7777” refers to the hsa-miR-7777 gene (miRBase Accession No. MIMAT0031180) described in SEQ ID NO: 46 and other biological species. Includes homologs or orthologs.
- the hsa-miR-7777 gene can be obtained by the method described in Velthut-Meikas A et al., 2013, Mol Endocrinol, online version.
- hsa-miR-7777 “hsa-mir-7777” (miRBase Accession No. MI0025753, SEQ ID NO: 220) having a hairpin-like structure as a precursor is known.
- hsa-miR-3665 gene or “hsa-miR-3665” refers to the hsa-miR-3665 gene (miRBase Accession No. MIMAT0018087) described in SEQ ID NO: 47 and other biological species. Includes homologs or orthologs.
- the hsa-miR-3665 gene can be obtained by the method described in Xie X et al., 2005, Nature, 434, p338-345.
- hsa-miR-3665 “hsa-mir-3665” (miRBase Accession No. MI0016066, SEQ ID NO: 221) having a hairpin-like structure as a precursor is known.
- hsa-miR-128-1-5p gene or “hsa-miR-128-1-5p” refers to the hsa-miR-128-1-5p set forth in SEQ ID NO: 48. It includes genes (miRBase Accession No. MIMAT0026477) and other species homologues or orthologues.
- the hsa-miR-128-1-5p gene can be obtained by the method described in Lagos-Quintana M et al., 2002, Curr Biol, Vol. 12, p735-739.
- “Hsa-miR-128-1-5p” is known as “hsa-mir-128-1” (miRBase Accession No. MI0000447, SEQ ID NO: 222) having a hairpin-like structure as a precursor.
- hsa-miR-4286 gene or “hsa-miR-4286” refers to the hsa-miR-4286 gene (miRBase Accession No. MIMAT0016916) described in SEQ ID NO: 49 and other biological species. Includes homologs or orthologs.
- the hsa-miR-4286 gene can be obtained by the method described in Goff LA et al., 2009, PLoS One, Vol. 4, e7192.
- hsa-miR-4286 “hsa-mir-4286” (miRBase Accession No. MI0015894, SEQ ID NO: 223) having a hairpin-like structure as a precursor is known.
- hsa-miR-6765-3p gene or “hsa-miR-6765-3p” refers to the hsa-miR-6765-3p gene described in SEQ ID NO: 50 (miRBase Accession No. MIMAT0027431) and other species homologs or orthologs.
- the hsa-miR-6765-3p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6765-3p “hsa-mir-6765” (miRBase Accession No. MI0022610, SEQ ID NO: 224) having a hairpin-like structure as a precursor is known.
- hsa-miR-4632-5p gene or “hsa-miR-4632-5p” refers to the hsa-miR-4632-5p gene (miRBase Accession No. 5) described in SEQ ID NO: 51. MIMAT0022977) and other species homologs or orthologs.
- the hsa-miR-4632-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4632-5p” is known as “hsa-mir-4632” (miRBase Accession No. MI0017259, SEQ ID NO: 225) having a hairpin-like structure as a precursor.
- hsa-miR-365a-5p gene or “hsa-miR-365a-5p” refers to the hsa-miR-365a-5p gene described in SEQ ID NO: 52 (miRBase Accession No. MIMAT0009199) and other species homologs or orthologs.
- the hsa-miR-365a-5p gene can be obtained by the method described in Xie X et al., 2005, Nature, 434, p338-345.
- hsa-miR-365a-5p “hsa-mir-365a” (miRBase Accession No. MI000067, SEQ ID NO: 226) having a hairpin-like structure as a precursor is known.
- hsa-miR-6088 gene or “hsa-miR-6088” refers to the hsa-miR-6088 gene (miRBase Accession No. MIMAT0023713) described in SEQ ID NO: 53 and other biological species. Includes homologs or orthologs.
- the hsa-miR-6088 gene can be obtained by the method described in Yoo JK et al., 2012, Stem Cells Dev, 21, p2049-2057.
- hsa-miR-6088 is known as “hsa-mir-6088” (miRBase Accession No. MI0020365, SEQ ID NO: 227), which has a hairpin-like structure as a precursor.
- hsa-miR-6816-5p gene or “hsa-miR-6816-5p” refers to the hsa-miR-6816-5p gene described in SEQ ID NO: 54 (miRBase Accession No. MIMAT0027532) and other species homologs or orthologs.
- the hsa-miR-6816-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6816-5p” is known as “hsa-mir-6816” (miRBase Accession No. MI0022661, SEQ ID NO: 228) having a hairpin-like structure as a precursor.
- hsa-miR-685-5p gene or “hsa-miR-685-5p” refers to the hsa-miR-6885-5p gene (miRBase Accession No. 5) described in SEQ ID NO: 55. MIMAT0027670) and other species homologs or orthologs.
- the hsa-miR-685-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6885-5p” is known as “hsa-mir-6885” (miRBase Accession No. MI0022732, SEQ ID NO: 229) having a hairpin-like structure as a precursor.
- hsa-miR-711 gene or “hsa-miR-711” refers to the hsa-miR-711 gene (miRBase Accession No. MIMAT0012734) described in SEQ ID NO: 56 or other biological species. Includes homologs or orthologs.
- the hsa-miR-711 gene can be obtained by the method described in Artzi S et al., 2008, BMC Bioinformatics, Vol. 9, p39.
- hsa-miR-711 “hsa-mir-711” (miRBase Accession No. MI0012488, SEQ ID NO: 230) having a hairpin-like structure as a precursor is known.
- hsa-miR-6765-5p gene or “hsa-miR-6765-5p” refers to the hsa-miR-6765-5p gene described in SEQ ID NO: 57 (miRBase Accession No. MIMAT0027430) and other species homologs or orthologs.
- the hsa-miR-6765-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6765-5p “hsa-mir-6765” (miRBase Accession No. MI0022610, SEQ ID NO: 224) having a hairpin-like structure as a precursor is known.
- hsa-miR-3180 gene or “hsa-miR-3180” refers to the hsa-miR-3180 gene (miRBase Accession No. MIMAT0018178) described in SEQ ID NO: 58 and other biological species. Includes homologs or orthologs.
- the hsa-miR-3180 gene can be obtained by the method described in Creighton CJ et al., 2010, PLoS One, 5, e9637.
- “Hsa-miR-3180” has a hairpin-like structure as a precursor thereof, “hsa-mir-3180-4, hsa-mir-3180-5” (miRBBase Accession No. MI0016408, MI0016409, SEQ ID NO: 231, 232) is known.
- hsa-miR-4442 gene or “hsa-miR-4442” refers to the hsa-miR-4442 gene (miRBase Accession No. MIMAT0018960) described in SEQ ID NO: 59 or other biological species. Includes homologs or orthologs.
- the hsa-miR-4442 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-mir-4442 (miRBase Accession No. MI0016785, SEQ ID NO: 233) having a hairpin-like structure as a precursor is known.
- hsa-miR-4792 gene or “hsa-miR-4792” refers to the hsa-miR-4792 gene (miRBase Accession No. MIMAT0019964) described in SEQ ID NO: 60 or other biological species. Includes homologs or orthologs.
- the hsa-miR-4792 gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- hsa-miR-4792 “hsa-mir-4792” (miRBase Accession No. MI0017439, SEQ ID NO: 234) having a hairpin-like structure as a precursor is known.
- hsa-miR-6721-5p gene or “hsa-miR-6721-5p” refers to the hsa-miR-6721-5p gene described in SEQ ID NO: 61 (miRBase Accession No. MIMAT0025852) and other species homologs or orthologs.
- the hsa-miR-6721-5p gene can be obtained by the method described in Li Y et al., 2012, Gene, 497, p330-335.
- hsa-miR-6721-5p “hsa-mir-6721” (miRBase Accession No. MI0022556, SEQ ID NO: 235) having a hairpin-like structure as a precursor is known.
- hsa-miR-6798-5p gene or “hsa-miR-6798-5p” refers to the hsa-miR-6798-5p gene described in SEQ ID NO: 62 (miRBase Accession No. MIMAT0027496) and other species homologs or orthologs.
- the hsa-miR-6798-5p gene can be obtained by the method described in Ladwig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6798-5p” is known as “hsa-mir-6798” (miRBase Accession No. MI0022643, SEQ ID NO: 236) having a hairpin-like structure as a precursor.
- hsa-miR-3162-5p gene or “hsa-miR-3162-5p” refers to the hsa-miR-3162-5p gene described in SEQ ID NO: 63 (miRBase Accession No. MIMAT0015036) and other species homologs or orthologs.
- the hsa-miR-3162-5p gene can be obtained by the method described in Stark MS et al., 2010, PLoS One, 5, e9685.
- “hsa-miR-3162-5p” “hsa-mir-3162” (miRBase Accession No. MI0014192, SEQ ID NO: 237) having a hairpin-like structure as a precursor is known.
- hsa-miR-6126 gene or “hsa-miR-6126” refers to the hsa-miR-6126 gene (miRBase Accession No. MIMAT0024599) described in SEQ ID NO: 64 and other biological species. Includes homologs or orthologs.
- the hsa-miR-6126 gene can be obtained by the method described in Smith JL et al., 2012, J Virol, 86, p5278-5287.
- “hsa-miR-6126” is known as “hsa-mir-6126” (miRBase Accession No. MI0021260, SEQ ID NO: 238) having a hairpin-like structure as a precursor.
- hsa-miR-4758-5p gene or “hsa-miR-4758-5p” refers to the hsa-miR-4758-5p gene described in SEQ ID NO: 65 (miRBase Accession No. MIMAT0019903) and other species homologs or orthologs.
- the hsa-miR-4758-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4758-5p” is known as “hsa-mir-4758” (miRBase Accession No. MI0017399, SEQ ID NO: 239) having a hairpin-like structure as a precursor.
- hsa-miR-2392 gene or “hsa-miR-2392” refers to the hsa-miR-2392 gene (miRBase Accession No. MIMAT0019043) described in SEQ ID NO: 66 or other biological species. Includes homologs or orthologs.
- the hsa-miR-2392 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-mir-2392 (miRBase Accession No. MI0016870, SEQ ID NO: 240) having a hairpin-like structure as a precursor is known.
- hsa-miR-486-3p gene or “hsa-miR-486-3p” refer to the hsa-miR-486-3p gene described in SEQ ID NO: 67 (miRBase Accession No. MIMAT0004762) and other species homologs or orthologs.
- the hsa-miR-486-3p gene can be obtained by the method described in Fu H et al., 2005, FEBS Lett, 579, p3849-3854.
- “Hsa-miR-486-3p” has a hairpin-like structure as a precursor thereof, “hsa-mir-486, hsa-mir-486-2” (miRBase Accession No. MI0002470, MI0023622, SEQ ID NO: 241, 242) is known.
- hsa-miR-6727-5p gene or “hsa-miR-6727-5p” refers to the hsa-miR-6727-5p gene described in SEQ ID NO: 68 (miRBase Accession No. MIMAT0027355) and other species homologs or orthologs.
- the hsa-miR-6727-5p gene can be obtained by the method described in Ladwig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6727-5p “hsa-mir-6727” (miRBase Accession No. MI0022572, SEQ ID NO: 243) having a hairpin-like structure as a precursor is known.
- hsa-miR-4728-5p gene or “hsa-miR-4728-5p” refers to the hsa-miR-4728-5p gene described in SEQ ID NO: 69 (miRBase Accession No. MIMAT0019849) and other species homologs or orthologs.
- the hsa-miR-4728-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4728-5p” “hsa-mir-4728” (miRBase Accession No. MI0017365, SEQ ID NO: 244) having a hairpin-like structure as a precursor is known.
- hsa-miR-6746-5p gene or “hsa-miR-6746-5p” refers to the hsa-miR-6746-5p gene described in SEQ ID NO: 70 (miRBase Accession No. MIMAT0027392) and other species homologs or orthologs.
- the hsa-miR-6746-5p gene can be obtained by the method described in Ladwig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6746-5p “hsa-mir-6746” (miRBase Accession No. MI0022591, SEQ ID NO: 245) having a hairpin-like structure as a precursor is known.
- hsa-miR-4270 gene or “hsa-miR-4270” refers to the hsa-miR-4270 gene (miRBase Accession No. MIMAT0016900) described in SEQ ID NO: 71 and other biological species. Includes homologs or orthologs.
- the hsa-miR-4270 gene can be obtained by the method described in Goff LA et al., 2009, PLoS One, Vol. 4, e7192.
- hsa-miR-4270 “hsa-mir-4270” (miRBase Accession No. MI0015878, SEQ ID NO: 246) having a hairpin-like structure as a precursor is known.
- hsa-miR-3940-5p gene or “hsa-miR-3940-5p” refers to the hsa-miR-3940-5p gene described in SEQ ID NO: 72 (miRBase Accession No. MIMAT0019229) and other species homologs or orthologs.
- the hsa-miR-3940-5p gene can be obtained by the method described in Liao JY et al., 2010, PLoS One, 5, e10563.
- “hsa-miR-3940-5p” is known as “hsa-mir-3940” (miRBase Accession No. MI0016597, SEQ ID NO: 247) having a hairpin-like structure as a precursor.
- hsa-miR-4725-3p gene or “hsa-miR-4725-3p” refers to the hsa-miR-4725-3p gene (miRBase Accession No. 7 described in SEQ ID NO: 73). MIMAT0019844) and other species homologs or orthologs.
- the hsa-miR-4725-3p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4725-3p” “hsa-mir-4725” (miRBase Accession No. MI0017362, SEQ ID NO: 248) having a hairpin-like structure as a precursor is known.
- hsa-miR-7108-5p gene or “hsa-miR-7108-5p” refers to the hsa-miR-7108-5p gene described in SEQ ID NO: 74 (miRBase Accession No. MIMAT0028113) and other species homologs or orthologs.
- the hsa-miR-7108-5p gene can be obtained by the method described in Ladwig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-7108-5p” is known as “hsa-mir-7108” (miRBase Accession No. MI0022959, SEQ ID NO: 249) having a hairpin-like structure as a precursor.
- hsa-miR-3656 gene or “hsa-miR-3656” refers to the hsa-miR-3656 gene (miRBase Accession No. MIMAT0018076) described in SEQ ID NO: 75 and other biological species. Includes homologs or orthologs.
- the hsa-miR-3656 gene can be obtained by the method described in Meiri E et al., 2010, Nucleic Acids Res, 38, p6234-6246.
- hsa-miR-3656 “hsa-mir-3656” (miRBase Accession No. MI0016056, SEQ ID NO: 250) having a hairpin-like structure as a precursor is known.
- hsa-miR-6879-5p gene or “hsa-miR-6879-5p” refers to the hsa-miR-6879-5p gene described in SEQ ID NO: 76 (miRBase Accession No. MIMAT0027658) and other species homologs or orthologs.
- the hsa-miR-6879-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6879-5p “hsa-mir-6879” (miRBase Accession No. MI0022726, SEQ ID NO: 251) having a hairpin-like structure as a precursor is known.
- hsa-miR-6738-5p gene or “hsa-miR-6738-5p” refers to the hsa-miR-6738-5p gene described in SEQ ID NO: 77 (miRBase Accession No. MIMAT0027377) and other species homologs or orthologs.
- the hsa-miR-6738-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6738-5p” is known as “hsa-mir-6738” (miRBase Accession No. MI0022583, SEQ ID NO: 252) having a hairpin-like structure as a precursor.
- hsa-miR-1260a gene or “hsa-miR-1260a” refers to the hsa-miR-1260a gene (miRBase Accession No. MIMAT0005911) described in SEQ ID NO: 78 or other biological species. Includes homologs or orthologs.
- the hsa-miR-1260a gene can be obtained by the method described in Morin RD et al., 2008, Genome Res, 18, p610-621.
- “hsa-miR-1260a” is known as “hsa-mir-1260a” (miRBase Accession No. MI0006394, SEQ ID NO: 253) having a hairpin-like structure as a precursor.
- hsa-miR-4446-3p gene or “hsa-miR-4446-3p” refers to the hsa-miR-4446-3p gene described in SEQ ID NO: 79 (miRBase Accession No. MIMAT0018965) and other species homologs or orthologs.
- the hsa-miR-4446-3p gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-miR-4446-3p “hsa-mir-4446” (miRBase Accession No. MI0016789, SEQ ID NO: 254) having a hairpin-like structure as a precursor is known.
- hsa-miR-3131 gene or “hsa-miR-3131” refers to the hsa-miR-3131 gene (miRBase Accession No. MIMAT0014996) described in SEQ ID NO: 80 or other biological species. Includes homologs or orthologs.
- the hsa-miR-3131 gene can be obtained by the method described in Stark MS et al., 2010, PLoS One, 5, e9685.
- “hsa-miR-3131” is known as “hsa-mir-3131” (miRBase Accession No. MI0014151, SEQ ID NO: 255) having a hairpin-like structure as a precursor.
- hsa-miR-4463 gene or “hsa-miR-4463” refers to the hsa-miR-4463 gene (miRBase Accession No. MIMAT0018987) described in SEQ ID NO: 81 or other biological species. Includes homologs or orthologs.
- the hsa-miR-4463 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-mir-4463 (miRBase Accession No. MI0016811, SEQ ID NO: 256) having a hairpin-like structure as a precursor is known.
- hsa-miR-3185 gene or “hsa-miR-3185” refers to the hsa-miR-3185 gene (miRBase Accession No. MIMAT0015065) described in SEQ ID NO: 82 or other biological species. Includes homologs or orthologs.
- the hsa-miR-3185 gene can be obtained by the method described in Stark MS et al., 2010, PLoS One, 5, e9685.
- hsa-miR-3185 “hsa-mir-3185” (miRBase Accession No. MI0014227, SEQ ID NO: 257) having a hairpin-like structure as a precursor is known.
- hsa-miR-6870-5p gene or “hsa-miR-6870-5p” refers to the hsa-miR-6870-5p gene described in SEQ ID NO: 83 (miRBase Accession No. MIMAT0027640) and other species homologs or orthologs.
- the hsa-miR-6870-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6870-5p” is known as “hsa-mir-6870” (miRBase Accession No. MI0022717, SEQ ID NO: 258) having a hairpin-like structure as a precursor.
- hsa-miR-6679-5p gene or “hsa-miR-6679-5p” refers to the hsa-miR-6679-5p gene described in SEQ ID NO: 84 (miRBase Accession No. MIMAT0027458) and other species homologs or orthologs.
- the hsa-miR-6679-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6779-5p” is known as “hsa-mir-6679” (miRBase Accession No. MI0022624, SEQ ID NO: 259) having a hairpin-like structure as a precursor.
- hsa-miR-1273g-3p gene or “hsa-miR-1273g-3p” refers to the hsa-miR-1273g-3p gene described in SEQ ID NO: 85 (miRBase Accession No. MIMAT0022742) and other species homologs or orthologs.
- the hsa-miR-1273g-3p gene can be obtained by the method described in Reshmi G et al., 2011, Genomics, 97, p333-340.
- hsa-miR-1273g-3p “hsa-mir-1273g” (miRBase Accession No. MI0018003, SEQ ID NO: 260) having a hairpin-like structure as a precursor is known.
- hsa-miR-8059 gene or “hsa-miR-8059” refers to the hsa-miR-8059 gene (miRBase Accession No. MIMAT0030986) described in SEQ ID NO: 86 or other biological species. Includes homologs or orthologs.
- the hsa-miR-8059 gene can be obtained by the method described in Wang HJ et al., 2013, Shock, 39, p480-487.
- hsa-miR-8059 “hsa-mir-8059” (miRBase Accession No. MI0025895, SEQ ID NO: 261) having a hairpin-like structure as a precursor is known.
- hsa-miR-4697-5p gene or “hsa-miR-4697-5p” refers to the hsa-miR-4697-5p gene described in SEQ ID NO: 87 (miRBase Accession No. MIMAT0019791) and other species homologs or orthologs.
- the hsa-miR-4697-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4697-5p” “hsa-mir-4697” (miRBase Accession No. MI0017330, SEQ ID NO: 262) having a hairpin-like structure as a precursor is known.
- hsa-miR-4675 gene or “hsa-miR-4675” refers to the hsa-miR-4675 gene (miRBase Accession No. MIMAT0019756) described in SEQ ID NO: 88 or other biological species. Includes homologs or orthologs.
- the hsa-miR-4675 gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- hsa-miR-4675 “hsa-mir-4675” (miRBase Accession No. MI0017305, SEQ ID NO: 263) having a hairpin-like structure as a precursor is known.
- hsa-miR-4433-3p gene or “hsa-miR-4433-3p” refers to the hsa-miR-4433-3p gene described in SEQ ID NO: 89 (miRBase Accession No. MIMAT0018949) and other species homologs or orthologs.
- the hsa-miR-4433-3p gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- “hsa-miR-4433-3p” is known as “hsa-mir-4433” (miRBase Accession No. MI0016773, SEQ ID NO: 264) having a hairpin-like structure as a precursor.
- hsa-miR-4257 gene or “hsa-miR-4257” refers to the hsa-miR-4257 gene (miRBase Accession No. MIMAT0016878) described in SEQ ID NO: 90 or other biological species. Includes homologs or orthologs.
- the hsa-miR-4257 gene can be obtained by the method described in Goff LA et al., 2009, PLoS One, Vol. 4, e7192.
- hsa-miR-4257 “hsa-mir-4257” (miRBase Accession No. MI0015856, SEQ ID NO: 265) having a hairpin-like structure as a precursor is known.
- hsa-miR-1915-5p gene or “hsa-miR-1915-5p” refers to the hsa-miR-1915-5p gene described in SEQ ID NO: 91 (miRBase Accession No. MIMAT0007891) and other species homologs or orthologs.
- the hsa-miR-1915-5p gene can be obtained by the method described in Bar M et al., 2008, Stem Cells, Vol. 26, p2496-2505.
- “hsa-miR-1915-5p” is known as “hsa-mir-1915” (miRBase Accession No. MI0008336, SEQ ID NO: 266) having a hairpin-like structure as a precursor.
- hsa-miR-4417 gene or “hsa-miR-4417” refers to the hsa-miR-4417 gene (miRBase Accession No. MIMAT0018929) described in SEQ ID NO: 92 or other biological species. Includes homologs or orthologs.
- the hsa-miR-4417 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-miR-4417 “hsa-mir-4417” (miRBase Accession No. MI0016753, SEQ ID NO: 267) having a hairpin-like structure as a precursor is known.
- hsa-miR-1343-5p gene or “hsa-miR-1343-5p” refers to the hsa-miR-1343-5p gene described in SEQ ID NO: 93 (miRBase Accession No. MIMAT0027038) and other species homologs or orthologs.
- the hsa-miR-1343-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-1343-5p” “hsa-mir-1343” (miRBase Accession No. MI0017320, SEQ ID NO: 182) having a hairpin-like structure as a precursor is known.
- hsa-miR-6781-5p gene or “hsa-miR-6781-5p” refers to the hsa-miR-6781-5p gene described in SEQ ID NO: 94 (miRBase Accession No. MIMAT0027462) and other species homologs or orthologs.
- the hsa-miR-6781-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “Hsa-miR-6781-5p” is known as “hsa-mir-6781” (miRBase Accession No. MI0022626, SEQ ID NO: 268) having a hairpin-like structure as a precursor.
- hsa-miR-4695-5p gene or “hsa-miR-4695-5p” refers to the hsa-miR-4695-5p gene described in SEQ ID NO: 95 (miRBase Accession No. MIMAT0019788) and other species homologs or orthologs.
- the hsa-miR-4695-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “Hsa-miR-4695-5p” is known as “hsa-mir-4695” (miRBase Accession No. MI0017328, SEQ ID NO: 269) having a hairpin-like structure as a precursor.
- hsa-miR-1237-5p gene or “hsa-miR-1237-5p” refers to the hsa-miR-1237-5p gene described in SEQ ID NO: 96 (miRBase Accession No. MIMAT0022946) and other species homologs or orthologs.
- the hsa-miR-1237-5p gene can be obtained by the method described in Berezikov E et al., 2007, Mol Cell, 28, p328-336.
- “hsa-miR-1237-5p” is known as “hsa-mir-1237” (miRBase Accession No. MI0006327, SEQ ID NO: 270) having a hairpin-like structure as a precursor.
- hsa-miR-6775-5p gene or “hsa-miR-6775-5p” refers to the hsa-miR-6775-5p gene described in SEQ ID NO: 97 (miRBase Accession No. MIMAT0027450) and other species homologs or orthologs.
- the hsa-miR-6775-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6775-5p “hsa-mir-6775” (miRBase Accession No. MI0022620, SEQ ID NO: 271) having a hairpin-like structure as a precursor is known.
- hsa-miR-7845-5p gene or “hsa-miR-7845-5p” refers to the hsa-miR-7845-5p gene described in SEQ ID NO: 98 (miRBase Accession No. MIMAT0030420) and other species homologs or orthologs.
- the hsa-miR-7845-5p gene can be obtained by the method described in Ple H et al., 2012, PLoS One, Vol. 7, e50746.
- “hsa-miR-7845-5p” is known as “hsa-mir-7845” (miRBase Accession No. MI0025515, SEQ ID NO: 272) having a hairpin-like structure as a precursor.
- hsa-miR-4746-3p gene or “hsa-miR-4746-3p” refers to the hsa-miR-4746-3p gene (miRBase Accession No. MIMAT0019881) and other species homologs or orthologs.
- the hsa-miR-4746-3p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4746-3p” is known as “hsa-mir-4746” (miRBase Accession No. MI0017385, SEQ ID NO: 273) having a hairpin-like structure as a precursor.
- hsa-miR-7641 gene or “hsa-miR-7641” refers to the hsa-miR-7641 gene (miRBase Accession No. MIMAT0029782) described in SEQ ID NO: 100 or other biological species. Includes homologs or orthologs.
- the hsa-miR-7641 gene can be obtained by the method described in Yoo JK et al., 2013, Arch Pharm Res, 36, p353-358.
- “Hsa-miR-7641” has a hairpin-like structure as its precursor, “hsa-mir-7464-1, hsa-mir-7641-2” (miRBase Accession No. MI0024975, MI0024976, SEQ ID NO: 274, 275) is known.
- hsa-miR-7847-3p gene or “hsa-miR-7847-3p” refers to the hsa-miR-7847-3p gene described in SEQ ID NO: 101 (miRBase Accession No. MIMAT0030422) and other species homologs or orthologs.
- the hsa-miR-7847-3p gene can be obtained by the method described in Ple H et al., 2012, PLoS One, Vol. 7, e50746.
- “hsa-miR-7847-3p” is known as “hsa-mir-7847” (miRBase Accession No. MI0025517, SEQ ID NO: 276) having a hairpin-like structure as a precursor.
- hsa-miR-6806-5p gene or “hsa-miR-6806-5p” refers to the hsa-miR-6806-5p gene described in SEQ ID NO: 102 (miRBase Accession No. MIMAT0027512) and other species homologs or orthologs.
- the hsa-miR-6806-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6806-5p “hsa-mir-6806” (miRBase Accession No. MI0022651, SEQ ID NO: 277) having a hairpin-like structure as a precursor is known.
- hsa-miR-4467 gene or “hsa-miR-4467” refers to the hsa-miR-4467 gene (miRBase Accession No. MIMAT0018994) described in SEQ ID NO: 103 or other biological species. Includes homologs or orthologs.
- the hsa-miR-4467 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-mir-4467 (miRBase Accession No. MI0016818, SEQ ID NO: 278) having a hairpin-like structure as a precursor is known.
- hsa-miR-4726-5p gene or “hsa-miR-4726-5p” refers to the hsa-miR-4726-5p gene described in SEQ ID NO: 104 (miRBase Accession No. MIMAT0019845) and other species homologs or orthologs.
- the hsa-miR-4726-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4726-5p” “hsa-mir-4726” (miRBase Accession No. MI0017363, SEQ ID NO: 279) having a hairpin-like structure as a precursor is known.
- hsa-miR-4648 gene or “hsa-miR-4648” refers to the hsa-miR-4648 gene (miRBase Accession No. MIMAT0019710) described in SEQ ID NO: 105 and other biological species. Includes homologs or orthologs.
- the hsa-miR-4648 gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- hsa-miR-4648 “hsa-mir-4648” (miRBase Accession No. MI0017275, SEQ ID NO: 280) having a hairpin-like structure as a precursor is known.
- hsa-miR-6089 gene or “hsa-miR-6089” refers to the hsa-miR-6089 gene (miRBase Accession No. MIMAT0023714) described in SEQ ID NO: 106 or other biological species. Includes homologs or orthologs.
- the hsa-miR-6089 gene can be obtained by the method described in Yoo JK et al., 2012, Stem Cells Dev, 21, p2049-2057.
- “Hsa-miR-6089” has “hsa-mir-6089-1, hsa-mir-6089-2” (miRBase Accession No. MI0020366, MI0023563, SEQ ID NO: 281; 282) is known.
- hsa-miR-1260b gene or “hsa-miR-1260b” refers to the hsa-miR-1260b gene (miRBase Accession No. MIMAT0015041) described in SEQ ID NO: 107 and other biological species. Includes homologs or orthologs.
- the hsa-miR-1260b gene can be obtained by the method described in Stark MS et al., 2010, PLoS One, 5, e9685.
- “hsa-miR-1260b” is known as “hsa-mir-1260b” (miRBase Accession No. MI0014197, SEQ ID NO: 283) having a hairpin-like structure as a precursor.
- hsa-miR-4532 gene or “hsa-miR-4532” refers to the hsa-miR-4532 gene (miRBase Accession No. MIMAT0019071) described in SEQ ID NO: 108 or other biological species. Includes homologs or orthologs.
- the hsa-miR-4532 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-mir-4532 (miRBase Accession No. MI0016899, SEQ ID NO: 284) having a hairpin-like structure as a precursor is known.
- hsa-miR-5195-3p gene or “hsa-miR-5195-3p” refers to the hsa-miR-5195-3p gene described in SEQ ID NO: 109 (miRBase Accession No. MIMAT0021127) and other species homologs or orthologs.
- the hsa-miR-5195-3p gene can be obtained by the method described in Schotte D et al., 2011, Leukemia, 25, p1389-1399.
- hsa-miR-5195-3p “hsa-mir-5195” (miRBase Accession No. MI0018174, SEQ ID NO: 285) having a hairpin-like structure as a precursor is known.
- hsa-miR-3188 gene or “hsa-miR-3188” refers to the hsa-miR-3188 gene (miRBase Accession No. MIMAT0015070) described in SEQ ID NO: 110 and other biological species. Includes homologs or orthologs.
- the hsa-miR-3188 gene can be obtained by the method described in Stark MS et al., 2010, PLoS One, 5, e9685.
- “hsa-miR-3188” is known as “hsa-mir-3188” (miRBase Accession No. MI0014232, SEQ ID NO: 286) having a hairpin-like structure as a precursor.
- hsa-miR-6848-5p gene or “hsa-miR-6848-5p” refers to the hsa-miR-6848-5p gene described in SEQ ID NO: 111 (miRBase Accession No. MIMAT0027596) and other species homologs or orthologs.
- the hsa-miR-6848-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6848-5p” is known as “hsa-mir-6848” (miRBase Accession No. MI0022694, SEQ ID NO: 287) having a hairpin-like structure as a precursor.
- hsa-miR-1233-5p gene or “hsa-miR-1233-5p” refers to the hsa-miR-1233-5p gene (miRBase Accession No. MIMAT0022943) and other species homologs or orthologs.
- the hsa-miR-1233-5p gene can be obtained by the method described in Berezikov E et al., 2007, Mol Cell, 28, p328-336.
- “Hsa-miR-1233-5p” has a hairpin-like structure as a precursor thereof, “hsa-mir-1233-1, hsa-mir-12233-2” (miRBase Accession No. MI0006323, MI0015973, SEQ ID NO: 288, 289) are known.
- hsa-miR-6717-5p gene or “hsa-miR-6717-5p” refers to the hsa-miR-6717-5p gene described in SEQ ID NO: 113 (miRBase Accession No. MIMAT0025846) and other species homologs or orthologs.
- the hsa-miR-6717-5p gene can be obtained by the method described in Li Y et al., 2012, Gene, 497, p330-335.
- hsa-miR-6717-5p “hsa-mir-6717” (miRBase Accession No. MI0022551, SEQ ID NO: 290) having a hairpin-like structure as a precursor is known.
- hsa-miR-3195 gene or “hsa-miR-3195” refers to the hsa-miR-3195 gene (miRBase Accession No. MIMAT0015079) described in SEQ ID NO: 114 or other biological species. Includes homologs or orthologs.
- the hsa-miR-3195 gene can be obtained by the method described in Stark MS et al., 2010, PLoS One, 5, e9685.
- hsa-miR-3195 “hsa-mir-3195” (miRBase Accession No. MI0014240, SEQ ID NO: 291) having a hairpin-like structure as a precursor is known.
- hsa-miR-6757-5p gene or “hsa-miR-6757-5p” refers to the hsa-miR-6757-5p gene described in SEQ ID NO: 115 (miRBase Accession No. MIMAT0027414) and other species homologs or orthologs.
- the hsa-miR-6757-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6757-5p “hsa-mir-6757” (miRBase Accession No. MI0022602, SEQ ID NO: 292) having a hairpin-like structure as a precursor is known.
- hsa-miR-8072 gene or “hsa-miR-8072” refers to the hsa-miR-8072 gene (miRBase Accession No. MIMAT0030999) described in SEQ ID NO: 116 or other biological species. Includes homologs or orthologs.
- the hsa-miR-8072 gene can be obtained by the method described in Wang HJ et al., 2013, Shock, 39, p480-487.
- hsa-miR-8072 “hsa-mir-8072” (miRBase Accession No. MI0025908, SEQ ID NO: 293) having a hairpin-like structure as a precursor is known.
- hsa-miR-4745-5p gene or “hsa-miR-4745-5p” refers to the hsa-miR-4745-5p gene described in SEQ ID NO: 117 (miRBase Accession No. MIMAT0019878) and other species homologs or orthologs.
- the hsa-miR-4745-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “Hsa-miR-4745-5p” is known as “hsa-mir-4745” (miRBase Accession No. MI0017384, SEQ ID NO: 294) having a hairpin-like structure as a precursor.
- hsa-miR-6511a-5p gene or “hsa-miR-6511a-5p” refers to the hsa-miR-6511a-5p gene described in SEQ ID NO: 118 (miRBase Accession No. MIMAT0025478) and other species homologs or orthologs.
- the hsa-miR-6511a-5p gene can be obtained by the method described in Joyce CE et al., 2011, Hum Mol Genet, 20, p4025-4040.
- hsa-miR-6511a-5p has a hairpin-like structure as its precursor, “hsa-mir-6651a-1, hsa-mir-6511a-2, hsa-mir-6651a-3, hsa-mir”.
- -6511a-4 "(miRBase Accession No. MI0022223, MI0023564, MI0023565, MI0023566, SEQ ID NO: 295, 296, 297, 298) is known.
- hsa-miR-6766-5p gene or “hsa-miR-6766-5p” refers to the hsa-miR-6766-5p gene (miRBase Accession No. MIMAT0027452) and other species homologs or orthologs.
- the hsa-miR-6767-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6766-5p “hsa-mir-6766” (miRBase Accession No. MI0022621, SEQ ID NO: 299) having a hairpin-like structure as a precursor is known.
- hsa-miR-371a-5p gene or “hsa-miR-371a-5p” refers to the hsa-miR-371a-5p gene described in SEQ ID NO: 120 (miRBase Accession No. MIMAT0004687) and other species homologs or orthologs.
- the hsa-miR-371a-5p gene can be obtained by the method described in Suh MR et al., 2004, Dev Biol, 270, p488-498.
- “hsa-miR-371a-5p” “hsa-mir-371a” (miRBase Accession No. MI000079, SEQ ID NO: 300) having a hairpin-like structure as a precursor is known.
- hsa-miR-1227-5p gene or “hsa-miR-1227-5p” refers to the hsa-miR-1227-5p gene described in SEQ ID NO: 121 (miRBase Accession No. MIMAT0022941) and other species homologs or orthologs.
- the hsa-miR-1227-5p gene can be obtained by the method described in Berezikov E et al., 2007, Mol Cell, 28, p328-336.
- “hsa-miR-1227-5p” is known as “hsa-mir-1227” (miRBase Accession No. MI0006316, SEQ ID NO: 301) having a hairpin-like structure as a precursor.
- hsa-miR-7150 gene or “hsa-miR-7150” refers to the hsa-miR-7150 gene (miRBase Accession No. MIMAT0028211) described in SEQ ID NO: 122 or other biological species. Includes homologs or orthologs.
- the hsa-miR-7150 gene can be obtained by the method described in Oulas A et al., 2009, Nucleic Acids Res, 37, p3276-3287.
- “hsa-miR-7150” is known as “hsa-mir-7150” (miRBase Accession No. MI0023610, SEQ ID NO: 302) having a hairpin-like structure as a precursor.
- hsa-miR-1915-3p gene or “hsa-miR-1915-3p” refers to the hsa-miR-1915-3p gene (miRBase Accession No. MIMAT0007892) and other species homologs or orthologs.
- the hsa-miR-1915-3p gene can be obtained by the method described in Bar M et al., 2008, Stem Cells, Vol. 26, p2496-2505.
- “hsa-miR-1915-3p” is known as “hsa-mir-1915” (miRBase Accession No. MI0008336, SEQ ID NO: 266) having a hairpin-like structure as a precursor.
- hsa-miR-187-5p gene or “hsa-miR-187-5p” refers to the hsa-miR-187-5p gene described in SEQ ID NO: 124 (miRBase Accession No. MIMAT0004561) and other species homologs or orthologs.
- the hsa-miR-187-5p gene can be obtained by the method described in Lim LP et al., 2003, Science, 299, p1540.
- hsa-miR-187-5p “hsa-mir-187” (miRBase Accession No. MI000000274, SEQ ID NO: 303) having a hairpin-like structure as a precursor is known.
- hsa-miR-614 gene or “hsa-miR-614” refers to the hsa-miR-614 gene (miRBase Accession No. MIMAT0003282) described in SEQ ID NO: 125 or other biological species. Includes homologs or orthologs.
- the hsa-miR-614 gene can be obtained by the method described in Cummins JM et al., 2006, Proc Natl Acad Sci US A, 103, p3687-3692.
- hsa-miR-614 “hsa-mir-614” (miRBase Accession No. MI0003627, SEQ ID NO: 304) having a hairpin-like structure as a precursor is known.
- hsa-miR-19b-3p gene or “hsa-miR-19b-3p” refers to the hsa-miR-19b-3p gene described in SEQ ID NO: 126 (miRBase Accession No. MIMAT0000074) and other species homologs or orthologs.
- the hsa-miR-19b-3p gene can be obtained by the method described in Lagos-Quintana M et al., 2001, Science, 294, p853-858.
- “Hsa-miR-19b-3p” has a hairpin-like structure as its precursor, “hsa-mir-19b-1, hsa-mir-19b-2” (miRBase Accession No. MI0000074, MI0000075, SEQ ID NO: 305, 306) are known.
- hsa-miR-1225-5p gene or “hsa-miR-1225-5p” refers to the hsa-miR-1225-5p gene described in SEQ ID NO: 127 (miRBase Accession No. MIMAT0005572) and other species homologs or orthologs.
- the hsa-miR-1225-5p gene can be obtained by the method described in Berezikov E et al., 2007, Mol Cell, 28, p328-336.
- “hsa-miR-1225-5p” is known as “hsa-mir-1225” (miRBase Accession No. MI0006311, SEQ ID NO: 307) having a hairpin-like structure as a precursor.
- hsa-miR-451a gene or “hsa-miR-451a” refers to the hsa-miR-451a gene (miRBase Accession No. MIMAT0001631) described in SEQ ID NO: 128 or other biological species. Includes homologs or orthologs.
- the hsa-miR-451a gene can be obtained by the method described in Altvia Y et al., 2005, Nucleic Acids Res, 33, p2697-2706.
- hsa-miR-451a “hsa-mir-451a” (miRBase Accession No. MI0001729, SEQ ID NO: 308), which has a hairpin-like structure as a precursor, is known.
- hsa-miR-939-5p gene or “hsa-miR-939-5p” refers to the hsa-miR-939-5p gene described in SEQ ID NO: 129 (miRBase Accession No. MIMAT0004982) and other species homologs or orthologs.
- the hsa-miR-939-5p gene can be obtained by the method described in Lui WO et al., 2007, Cancer Res, Vol. 67, p6031-6043.
- “hsa-miR-939-5p” is known as “hsa-mir-939” (miRBase Accession No. MI0005761, SEQ ID NO: 309) having a hairpin-like structure as a precursor.
- hsa-miR-223-3p gene or “hsa-miR-223-3p” refers to the hsa-miR-223-3p gene described in SEQ ID NO: 130 (miRBase Accession No. MIMAT 0000280) and other species homologs or orthologs.
- the hsa-miR-223-3p gene can be obtained by the method described in Lim LP et al., 2003, Science, 299, p1540.
- “hsa-miR-223-3p” “hsa-mir-223” (miRBase Accession No. MI0000300, SEQ ID NO: 310) having a hairpin-like structure as a precursor is known.
- hsa-miR-1228-5p gene or “hsa-miR-1228-5p” refers to the hsa-miR-1228-5p gene described in SEQ ID NO: 131 (miRBase Accession No. MIMAT0005582) and other species homologs or orthologs.
- the hsa-miR-1228-5p gene can be obtained by the method described in Berezikov E et al., 2007, Mol Cell, 28, p328-336.
- “hsa-miR-1228-5p” is known as “hsa-mir-1228” (miRBase Accession No. MI0006318, SEQ ID NO: 311) having a hairpin-like structure as a precursor.
- hsa-miR-125a-3p gene or “hsa-miR-125a-3p” refers to the hsa-miR-125a-3p gene described in SEQ ID NO: 132 (miRBase Accession No. MIMAT0004602) and other species homologs or orthologs.
- the hsa-miR-125a-3p gene can be obtained by the method described in Lagos-Quintana M et al., 2002, Curr Biol, Vol. 12, p735-739.
- “hsa-miR-125a-3p” is known as “hsa-mir-125a” (miRBase Accession No. MI000069, SEQ ID NO: 312) having a hairpin-like structure as a precursor.
- hsa-miR-92b-5p gene or “hsa-miR-92b-5p” refers to the hsa-miR-92b-5p gene described in SEQ ID NO: 133 (miRBase Accession No. MIMAT0004792) and other species homologs or orthologs.
- the hsa-miR-92b-5p gene can be obtained by the method described in Cummins JM et al., 2006, Proc Natl Acad Sci USA, 103, p3687-3692.
- “hsa-miR-92b-5p” is known as “hsa-mir-92b” (miRBase Accession No. MI0003560, SEQ ID NO: 313) having a hairpin-like structure as a precursor.
- hsa-miR-22-3p gene or “hsa-miR-22-3p” refers to the hsa-miR-22-3p gene described in SEQ ID NO: 134 (miRBase Accession No. MIMAT0000077) and other species homologs or orthologs.
- the hsa-miR-22-3p gene can be obtained by the method described in Lagos-Quintana M et al., 2001, Science, 294, p853-858.
- “hsa-miR-22-3p” is known as “hsa-mir-22” (miRBase Accession No. MI0000078, SEQ ID NO: 314) having a hairpin-like structure as a precursor.
- hsa-miR-4271 gene or “hsa-miR-4271” refers to the hsa-miR-4271 gene (miRBase Accession No. MIMAT0016901) described in SEQ ID NO: 135 or other biological species. Includes homologs or orthologs.
- the hsa-miR-4271 gene can be obtained by the method described in Goff LA et al., 2009, PLoS One, Vol. 4, e7192.
- hsa-miR-4271 “hsa-mir-4271” (miRBase Accession No. MI0015879, SEQ ID NO: 315) having a hairpin-like structure as a precursor is known.
- hsa-miR-642b-3p gene or “hsa-miR-642b-3p” refers to the hsa-miR-642b-3p gene described in SEQ ID NO: 136 (miRBase Accession No. MIMAT0018444) and other species homologs or orthologs.
- the hsa-miR-642b-3p gene can be obtained by the method described in Witten D et al., 2010, BMC Biol, Vol. 8, p58.
- “hsa-miR-642b-3p” is known as “hsa-mir-642b” (miRBase Accession No. MI0016685, SEQ ID NO: 316) having a hairpin-like structure as a precursor.
- hsa-miR-6075 gene or “hsa-miR-6075” refers to the hsa-miR-6075 gene (miRBase Accession No. MIMAT0023700) described in SEQ ID NO: 137 or other biological species. Includes homologs or orthologs.
- the hsa-miR-6075 gene can be obtained by the method described in Voellenkle C et al., 2012, RNA, 18, p472-484.
- hsa-miR-6075 “hsa-mir-6075” (miRBase Accession No. MI0020352, SEQ ID NO: 317) having a hairpin-like structure as a precursor is known.
- hsa-miR-6125 gene or “hsa-miR-6125” refers to the hsa-miR-6125 gene (miRBase Accession No. MIMAT0024598) described in SEQ ID NO: 138 or other biological species. Includes homologs or orthologs.
- the hsa-miR-6125 gene can be obtained by the method described in Smith JL et al., 2012, J Virol, 86, p5278-5287.
- “hsa-miR-6125” is known as “hsa-mir-6125” (miRBase Accession No. MI0021259, SEQ ID NO: 318) having a hairpin-like structure as a precursor.
- hsa-miR-887-3p gene or “hsa-miR-887-3p” refers to the hsa-miR-887-3p gene described in SEQ ID NO: 139 (miRBase Accession No. MIMAT0004951) and other species homologs or orthologs.
- the hsa-miR-887-3p gene can be obtained by the method described in Berezikov E et al., 2006, Genome Res, 16: p1299-1298.
- “hsa-miR-887-3p” is known as “hsa-mir-887” (miRBase Accession No. MI0005562, SEQ ID NO: 319) having a hairpin-like structure as a precursor.
- hsa-miR-6851-5p gene or “hsa-miR-6851-5p” refers to the hsa-miR-6851-5p gene described in SEQ ID NO: 140 (miRBase Accession No. MIMAT0027602) and other species homologs or orthologs.
- the hsa-miR-6651-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6851-5p “hsa-mir-6851” (miRBase Accession No. MI0022697, SEQ ID NO: 320) having a hairpin-like structure as a precursor is known.
- hsa-miR-6663-5p gene or “hsa-miR-6663-5p” refers to the hsa-miR-6663-5p gene described in SEQ ID NO: 141 (miRBase Accession No. MIMAT0027426) and other species homologs or orthologs.
- the hsa-miR-6673-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6663-5p” is known as “hsa-mir-6673” (miRBase Accession No. MI0022608, SEQ ID NO: 321) having a hairpin-like structure as a precursor.
- hsa-miR-3928-3p gene or “hsa-miR-3928-3p” refers to the hsa-miR-3928-3p gene described in SEQ ID NO: 142 (miRBase Accession No. MIMAT0018205) and other species homologs or orthologs.
- the hsa-miR-3928-3p gene can be obtained by the method described in Creighton CJ et al., 2010, PLoS One, 5, e9637.
- hsa-miR-3928-3p “hsa-mir-3928” (miRBase Accession No. MI0016438, SEQ ID NO: 322) having a hairpin-like structure as a precursor is known.
- hsa-miR-4443 gene or “hsa-miR-4443” refers to the hsa-miR-4443 gene (miRBase Accession No. MIMAT0018961) described in SEQ ID NO: 143 or other biological species. Includes homologs or orthologs.
- the hsa-miR-4443 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-miR-4443 is known as “hsa-mir-4443” (miRBase Accession No. MI0016786, SEQ ID NO: 323) having a hairpin-like structure as a precursor.
- hsa-miR-3648 gene or “hsa-miR-3648” refers to the hsa-miR-3648 gene (miRBase Accession No. MIMAT0018068) described in SEQ ID NO: 144 or other biological species. Includes homologs or orthologs.
- the hsa-miR-3648 gene can be obtained by the method described in Meiri E et al., 2010, Nucleic Acids Res, 38, p6234-6246.
- “hsa-miR-3648” is known as “hsa-mir-3648” (miRBase Accession No. MI0016048, SEQ ID NO: 324) having a hairpin-like structure as a precursor.
- hsa-miR-149-3p gene or “hsa-miR-149-3p” refers to the hsa-miR-149-3p gene described in SEQ ID NO: 145 (miRBase Accession No. MIMAT0004609) and other species homologs or orthologs.
- the hsa-miR-149-3p gene can be obtained by the method described in Lagos-Quintana M et al., 2002, Curr Biol, Vol. 12, p735-739.
- hsa-miR-149-3p “hsa-mir-149” (miRBase Accession No. MI0000478, SEQ ID NO: 325) having a hairpin-like structure as a precursor is known.
- hsa-miR-4687 gene or “hsa-miR-4687” refers to the hsa-miR-4687 gene (miRBase Accession No. MIMAT0019778) described in SEQ ID NO: 146 or other biological species. Includes homologs or orthologs.
- the hsa-miR-4689 gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4689” is known as “hsa-mir-4689” (miRBase Accession No. MI0017322, SEQ ID NO: 326) having a hairpin-like structure as a precursor.
- hsa-miR-4763-3p gene or “hsa-miR-4763-3p” refers to the hsa-miR-4763-3p gene described in SEQ ID NO: 147 (miRBase Accession No. MIMAT0019913) and other species homologs or orthologs.
- the hsa-miR-4763-3p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4763p” is known as “hsa-mir-4763” (miRBase Accession No. MI0017404, SEQ ID NO: 327) having a hairpin-like structure as a precursor.
- hsa-miR-6729-5p gene or “hsa-miR-6729-5p” refers to the hsa-miR-6729-5p gene described in SEQ ID NO: 148 (miRBase Accession No. MIMAT0027359) and other species homologs or orthologs.
- the hsa-miR-6729-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6729-5p “hsa-mir-6729” (miRBase Accession No. MI0022574, SEQ ID NO: 328) having a hairpin-like structure as a precursor is known.
- hsa-miR-3196 gene or “hsa-miR-3196” refers to the hsa-miR-3196 gene (miRBase Accession No. MIMAT0015080) described in SEQ ID NO: 149 or other biological species. Includes homologs or orthologs.
- the hsa-miR-3196 gene can be obtained by the method described in Stark MS et al., 2010, PLoS One, 5, e9685.
- hsa-miR-3196 “hsa-mir-3196” (miRBase Accession No. MI0014241, SEQ ID NO: 329) having a hairpin-like structure as a precursor is known.
- hsa-miR-8069 gene or “hsa-miR-8069” refers to the hsa-miR-8069 gene (miRBase Accession No. MIMAT0030996) described in SEQ ID NO: 150 or other biological species. Includes homologs or orthologs.
- the hsa-miR-8069 gene can be obtained by the method described in Wang HJ et al., 2013, Shock, 39, p480-487.
- hsa-miR-8069 “hsa-mir-8069” (miRBase Accession No. MI0025905, SEQ ID NO: 330) having a hairpin-like structure as a precursor is known.
- hsa-miR-1268a gene or “hsa-miR-1268a” refers to the hsa-miR-1268a gene (miRBase Accession No. MIMAT0005922) described in SEQ ID NO: 151 or other biological species. Includes homologs or orthologs.
- the hsa-miR-1268a gene can be obtained by the method described in Morin RD et al., 2008, Genome Res, 18, p610-621.
- “hsa-miR-1268a” is known as “hsa-mir-1268a” (miRBase Accession No. MI0006405, SEQ ID NO: 331) having a hairpin-like structure as a precursor.
- hsa-miR-4739 gene or “hsa-miR-4739” refers to the hsa-miR-4739 gene (miRBase Accession No. MIMAT0019868) described in SEQ ID NO: 152 or other biological species. Includes homologs or orthologs.
- the hsa-miR-4739 gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- hsa-miR-4739 “hsa-mir-4739” (miRBase Accession No. MI0017377, SEQ ID NO: 332) having a hairpin-like structure as a precursor is known.
- hsa-miR-1268b gene or “hsa-miR-1268b” refers to the hsa-miR-1268b gene (miRBase Accession No. MIMAT0018925) described in SEQ ID NO: 153 or other biological species. Includes homologs or orthologs.
- the hsa-miR-1268b gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-miR-1268b is known as “hsa-mir-1268b” (miRBase Accession No. MI0016748, SEQ ID NO: 333), which has a hairpin-like structure as a precursor.
- hsa-miR-5698 gene or “hsa-miR-5698” refers to the hsa-miR-5698 gene (miRBase Accession No. MIMAT0022491) described in SEQ ID NO: 154 or other biological species. Includes homologs or orthologs.
- the hsa-miR-5698 gene can be obtained by the method described in Watahiki A et al., 2011, PLoS One, Vol. 6, e24950.
- hsa-miR-5698 “hsa-mir-5698” (miRBase Accession No. MI0019305, SEQ ID NO: 334) having a hairpin-like structure as a precursor is known.
- hsa-miR-6752-5p gene or “hsa-miR-6752-5p” refers to the hsa-miR-6752-5p gene described in SEQ ID NO: 155 (miRBase Accession No. MIMAT0027404) and other species homologs or orthologs.
- the hsa-miR-6675-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6752-5p” is known as “hsa-mir-6752” (miRBase Accession No. MI0022597, SEQ ID NO: 335) having a hairpin-like structure as a precursor.
- hsa-miR-4507 gene or “hsa-miR-4507” refers to the hsa-miR-4507 gene (miRBase Accession No. MIMAT0019044) described in SEQ ID NO: 156 or other species. Includes homologs or orthologs.
- the hsa-miR-4507 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- “hsa-miR-4507” is known as “hsa-mir-4507” (miRBase Accession No. MI0016871, SEQ ID NO: 336) having a hairpin-like structure as a precursor.
- hsa-miR-564 gene or “hsa-miR-564” refers to the hsa-miR-564 gene (miRBase Accession No. MIMAT0003228) described in SEQ ID NO: 157 or other biological species. Includes homologs or orthologs.
- the hsa-miR-564 gene can be obtained by the method described in Cummins JM et al., 2006, Proc Natl Acad Sci USA, Vol. 103, p3687-3692.
- hsa-miR-564 “hsa-mir-564” (miRBase Accession No. MI0003570, SEQ ID NO: 337) having a hairpin-like structure as a precursor is known.
- hsa-miR-4497 gene or “hsa-miR-4497” refers to the hsa-miR-4497 gene (miRBase Accession No. MIMAT0019032) described in SEQ ID NO: 158 or other biological species. Includes homologs or orthologs.
- the hsa-miR-4497 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- hsa-miR-4497 “hsa-mir-4497” (miRBase Accession No. MI0016859, SEQ ID NO: 338) having a hairpin-like structure as a precursor is known.
- hsa-miR-6877-5p gene or “hsa-miR-6877-5p” refers to the hsa-miR-6877-5p gene described in SEQ ID NO: 159 (miRBase Accession No. MIMAT0027654) and other species homologs or orthologs.
- the hsa-miR-6877-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6877-5p” is known as “hsa-mir-6877” (miRBase Accession No. MI0022724, SEQ ID NO: 339) having a hairpin-like structure as a precursor.
- hsa-miR-6087 gene or “hsa-miR-6087” refers to the hsa-miR-6087 gene (miRBase Accession No. MIMAT0023712) described in SEQ ID NO: 160 or other biological species. Includes homologs or orthologs.
- the hsa-miR-6087 gene can be obtained by the method described in Yoo JK et al., 2012, Stem Cells Dev, 21, p2049-2057.
- hsa-miR-6087 “hsa-mir-6087” (miRBase Accession No. MI0020364, SEQ ID NO: 340) having a hairpin-like structure as a precursor is known.
- hsa-miR-4731-5p gene or “hsa-miR-4731-5p” refers to the hsa-miR-4731-5p gene described in SEQ ID NO: 161 (miRBase Accession No. MIMAT0019853) and other species homologs or orthologs.
- the hsa-miR-4731-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4731-5p” is known as “hsa-mir-4731” (miRBase Accession No. MI0017368, SEQ ID NO: 341), which has a hairpin-like structure as a precursor.
- hsa-miR-615-5p gene or “hsa-miR-615-5p” refers to the hsa-miR-615-5p gene described in SEQ ID NO: 162 (miRBase Accession No. MIMAT0004804) and other species homologs or orthologs.
- the hsa-miR-615-5p gene can be obtained by the method described in Cummins JM et al., 2006, Proc Natl Acad Sci USA, 103, p3687-3692.
- “hsa-miR-615-5p” is known as “hsa-mir-615” (miRBase Accession No. MI0003628, SEQ ID NO: 342) having a hairpin-like structure as a precursor.
- hsa-miR-760 gene or “hsa-miR-760” refers to the hsa-miR-760 gene (miRBase Accession No. MIMAT0004957) described in SEQ ID NO: 163 or other biological species. Includes homologs or orthologs.
- the hsa-miR-760 gene can be obtained by the method described in Berezikov E et al., 2006, Genome Res, 16, p1299-1298.
- hsa-miR-760 “hsa-mir-760” (miRBase Accession No. MI0005567, SEQ ID NO: 343) having a hairpin-like structure as a precursor is known.
- hsa-miR-6891-5p gene or “hsa-miR-6891-5p” refers to the hsa-miR-6891-5p gene described in SEQ ID NO: 164 (miRBase Accession No. MIMAT0027682) and other species homologs or orthologs.
- the hsa-miR-6891-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6891-5p” is known as “hsa-mir-6891” (miRBase Accession No. MI0022738, SEQ ID NO: 344) having a hairpin-like structure as a precursor.
- hsa-miR-687-5p gene or “hsa-miR-6687-5p” refers to the hsa-miR-687-5p gene described in SEQ ID NO: 165 (miRBase Accession No. MIMAT0027674) and other species homologs or orthologs.
- the hsa-miR-6687-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-687-5p” is known as “hsa-mir-6687” (miRBase Accession No. MI0022734, SEQ ID NO: 345) having a hairpin-like structure as a precursor.
- hsa-miR-4525 gene or “hsa-miR-4525” refers to the hsa-miR-4525 gene (miRBase Accession No. MIMAT0019064) described in SEQ ID NO: 166 or other biological species. Includes homologs or orthologs.
- the hsa-miR-4525 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- “Hsa-miR-4525” is known as “hsa-mir-4525” (miRBase Accession No. MI0016892, SEQ ID NO: 346) having a hairpin-like structure as a precursor.
- hsa-miR-1914-3p gene or “hsa-miR-1914-3p” refers to the hsa-miR-1914-3p gene described in SEQ ID NO: 167 (miRBase Accession No. MIMAT0007890) and other species homologs or orthologs.
- the hsa-miR-1914-3p gene can be obtained by the method described in Bar M et al., 2008, Stem Cells, Vol. 26, p2496-2505.
- hsa-miR-1914-3p “hsa-mir-1914” (miRBase Accession No. MI0008335, SEQ ID NO: 347) having a hairpin-like structure as a precursor is known.
- hsa-miR-619-5p gene or “hsa-miR-619-5p” refers to the hsa-miR-619-5p gene described in SEQ ID NO: 168 (miRBase Accession No. MIMAT0026622) and other species homologs or orthologs.
- the hsa-miR-619-5p gene can be obtained by the method described in Cummins JM et al., 2006, Proc Natl Acad Sci USA, 103, p3687-3692.
- “hsa-miR-619-5p” “hsa-mir-619” (miRBase Accession No. MI0003633, SEQ ID NO: 348) having a hairpin-like structure as a precursor is known.
- hsa-miR-5001-5p gene or “hsa-miR-5001-5p” refers to the hsa-miR-5001-5p gene described in SEQ ID NO: 169 (miRBase Accession No. MIMAT0021021) and other species homologs or orthologs.
- the hsa-miR-5001-5p gene can be obtained by the method described in Hansen TB et al., 2011, RNA Biol, 8, p378-383.
- “hsa-miR-5001-5p” is known as “hsa-mir-5001” (miRBase Accession No. MI0017867, SEQ ID NO: 349) having a hairpin-like structure as a precursor.
- hsa-miR-6722-3p gene or “hsa-miR-6722-3p” refers to the hsa-miR-6722-3p gene described in SEQ ID NO: 170 (miRBase Accession No. MIMAT0025854) and other species homologs or orthologs.
- the hsa-miR-6722-3p gene can be obtained by the method described in Li Y et al., 2012, Gene, 497, p330-335.
- hsa-miR-6722-3p “hsa-mir-6722” (miRBase Accession No. MI0022557, SEQ ID NO: 350) having a hairpin-like structure as a precursor is known.
- hsa-miR-3621 gene or “hsa-miR-3621” refers to the hsa-miR-3621 gene (miRBase Accession No. MIMAT0018002) described in SEQ ID NO: 171 or other biological species. Includes homologs or orthologs.
- the hsa-miR-3621 gene can be obtained by the method described in Witten D et al., 2010, BMC Biol, Vol. 8, p58.
- hsa-mir-3621 miRBase Accession No. MI0016012, SEQ ID NO: 351 having a hairpin-like structure as a precursor is known.
- hsa-miR-4298 gene or “hsa-miR-4298” refers to the hsa-miR-4298 gene (miRBase Accession No. MIMAT0016852) described in SEQ ID NO: 172 or other biological species. Includes homologs or orthologs.
- the hsa-miR-4298 gene can be obtained by the method described in Goff LA et al., 2009, PLoS One, Vol. 4, e7192.
- hsa-miR-4298 “hsa-mir-4298” (miRBase Accession No. MI0015830, SEQ ID NO: 352) having a hairpin-like structure as a precursor is known.
- hsa-miR-675-5p gene or “hsa-miR-675-5p” refers to the hsa-miR-675-5p gene described in SEQ ID NO: 173 (miRBase Accession No. MIMAT0004284) and other species homologs or orthologs.
- the hsa-miR-675-5p gene can be obtained by the method described in Cai X et al., 2007, RNA, Vol. 13, p313-316.
- “hsa-miR-675-5p” is known as “hsa-mir-675” (miRBase Accession No. MI0005416, SEQ ID NO: 353) having a hairpin-like structure as a precursor.
- hsa-miR-4655-5p gene or “hsa-miR-4655-5p” refers to the hsa-miR-4655-5p gene described in SEQ ID NO: 174 (miRBase Accession No. MIMAT0019721) and other species homologs or orthologs.
- the hsa-miR-4655-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- hsa-miR-4655-5p “hsa-mir-4655” (miRBase Accession No. MI0017283, SEQ ID NO: 354) having a hairpin-like structure as a precursor is known.
- hsa-miR-6073 gene or “hsa-miR-6073” refers to the hsa-miR-6073 gene (miRBase Accession No. MIMAT0023698) described in SEQ ID NO: 561 or other biological species. Homologs or orthologs are included.
- the hsa-miR-6073 gene can be obtained by the method described in Voellenkle C et al., 2012, RNA, 18, p472-484.
- hsa-miR-6073 “hsa-mir-6073” (miRBase Accession No. MI0020350, SEQ ID NO: 580) having a hairpin-like structure as a precursor is known.
- hsa-miR-6845-5p gene or “hsa-miR-6845-5p” refers to the hsa-miR-6845-5p gene described in SEQ ID NO: 562 (miRBase Accession No. MIMAT0027590) and other species homologues or orthologues are included.
- the hsa-miR-6845-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- hsa-miR-6845-5p “hsa-mir-6845” (miRBase Accession No. MI0022691, SEQ ID NO: 581) having a hairpin-like structure as a precursor is known.
- hsa-miR-6769b-5p gene or “hsa-miR-6769b-5p” refers to the hsa-miR-6769b-5p gene (miRBase Accession No. 5) described in SEQ ID NO: 563. MIMAT0027620) and other species homologues or orthologues are included.
- the hsa-miR-6769b-5p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-6769b-5p” is known as “hsa-mir-6769b” (miRBase Accession No. MI0022706, SEQ ID NO: 582) having a hairpin-like structure as a precursor.
- hsa-miR-4665-3p gene or “hsa-miR-4665-3p” refers to the hsa-miR-4665-3p gene (miRBase Accession No. 5) described in SEQ ID NO: 564. MIMAT0019740) and other species homologs or orthologs.
- the hsa-miR-4665-3p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- hsa-miR-4665-3p “hsa-mir-4665” (miRBase Accession No. MI0017295, SEQ ID NO: 583) having a hairpin-like structure as a precursor is known.
- hsa-miR-1913 gene or “hsa-miR-1913” refers to the hsa-miR-1913 gene (miRBase Accession No. MIMAT0007888) described in SEQ ID NO: 565 or other biological species. Homologs or orthologs are included.
- the hsa-miR-1913 gene can be obtained by the method described in Bar M et al., 2008, Stem Cells, 26, p2496-2505.
- hsa-miR-1913 “hsa-mir-1913” (miRBase Accession No. MI0008334, SEQ ID NO: 584), which has a hairpin-like structure as a precursor, is known.
- hsa-miR-1228-3p gene or “hsa-miR-1228-3p” refers to the hsa-miR-1228-3p gene (miRBase Accession No. 5) described in SEQ ID NO: 566. MIMAT0005583) and other species homologs or orthologs are included.
- the hsa-miR-1228-3p gene can be obtained by the method described in Berezikov E et al., 2007, Mol Cell, 28, p328-336.
- “hsa-miR-1228-3p” is known as “hsa-mir-1228” (miRBase Accession No. MI0006318, SEQ ID NO: 311) having a hairpin-like structure as a precursor.
- hsa-miR-940 gene or “hsa-miR-940” refers to the hsa-miR-940 gene (miRBase Accession No. MIMAT0004983) described in SEQ ID NO: 567 and other biological species Homologs or orthologs are included.
- the hsa-miR-940 gene can be obtained by the method described in Lui WO et al., 2007, Cancer Res, Vol. 67, p6031-43.
- hsa-miR-940 “hsa-mir-940” (miRBase Accession No. MI0005762, SEQ ID NO: 585) having a hairpin-like structure as a precursor is known.
- hsa-miR-296-3p gene or “hsa-miR-296-3p” refers to the hsa-miR-296-3p gene described in SEQ ID NO: 568 (miRBase Accession No. MIMAT0004679) and other species homologs or orthologs.
- the hsa-miR-296-3p gene can be obtained by the method described in Houbavy HB et al., 2003, Dev Cell, Vol. 5, p351-358.
- “hsa-miR-296-3p” is known as “hsa-mir-296” (miRBase Accession No. MI000047, SEQ ID NO: 586), which has a hairpin-like structure as a precursor.
- hsa-miR-4690-5p gene or “hsa-miR-4690-5p” refers to the hsa-miR-4690-5p gene described in SEQ ID NO: 569 (miRBase Accession No. MIMAT0019779) and other species homologs or orthologs.
- the hsa-miR-4690-5p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4690-5p” “hsa-mir-4690” (miRBase Accession No. MI0017323, SEQ ID NO: 587) having a hairpin-like structure as a precursor is known.
- hsa-miR-548q gene or “hsa-miR-548q” refers to the hsa-miR-548q gene (miRBase Accession No. MIMAT0011163) described in SEQ ID NO: 570 or other biological species. Homologs or orthologs are included.
- the hsa-miR-548q gene was obtained from Wyman SK et al., 2009, PLoS One. It can be obtained by the method described in Volume 4, e5311.
- “hsa-miR-548q” is known as “hsa-mir-548q” (miRBase Accession No. MI0010637, SEQ ID NO: 588) having a hairpin-like structure as a precursor.
- hsa-miR-663a gene or “hsa-miR-663a” refers to the hsa-miR-663a gene (miRBase Accession No. MIMAT0003326) described in SEQ ID NO: 571 or other biological species. Homologs or orthologs are included.
- the hsa-miR-663a gene can be obtained by the method described in Cummins JM et al., 2006, Proc Natl Acad Sci USA, Vol. 103, p3687-3692.
- “hsa-miR-663a” is known as “hsa-mir-663a” (miRBase Accession No. MI0003672, SEQ ID NO: 589), which has a hairpin-like structure as a precursor.
- hsa-miR-1249 gene or “hsa-miR-1249” refers to the hsa-miR-1249 gene (miRBase Accession No. MIMAT0005901) described in SEQ ID NO: 572 or other biological species. Homologs or orthologs are included.
- the hsa-miR-1249 gene can be obtained by the method described in Morin RD et al., 2008, Genome Res, 18, p610-621.
- “hsa-miR-1249” is known as “hsa-mir-1249” (miRBase Accession No. MI0006384, SEQ ID NO: 590) having a hairpin-like structure as a precursor.
- hsa-miR-1202 gene or “hsa-miR-1202” refers to the hsa-miR- 1202 gene (miRBase Accession No. MIMAT0005865) described in SEQ ID NO: 573 and other biological species. Homologs or orthologs are included.
- the hsa-miR- 1202 gene can be obtained by the method described in Marton S, et al., 2008, Leukemia, Vol. 22, p330-338.
- “hsa-miR-1202” is known as “hsa-mir-1220” (miRBase Accession No. MI0006334, SEQ ID NO: 591), which has a hairpin-like structure as a precursor.
- hsa-miR-7113-3p gene or “hsa-miR-7113-3p” refers to the hsa-miR-7113-3p gene described in SEQ ID NO: 574 (miRBase Accession No. MIMAT0028124) and other species homologues or orthologues are included.
- the hsa-miR-7113-3p gene can be obtained by the method described in Ladewig E et al., 2012, Genome Res, Vol. 22, p1634-1645.
- “hsa-miR-7113-3p” is known as “hsa-mir-7113” (miRBase Accession No. MI0022964, SEQ ID NO: 592) having a hairpin-like structure as a precursor.
- hsa-miR-1225-3p gene or “hsa-miR-1225-3p” refers to the hsa-miR-1225-3p gene described in SEQ ID NO: 575 (miRBase Accession No. MIMAT0005573) and other species homologues or orthologues are included.
- the hsa-miR-1225-3p gene can be obtained by the method described in Berezikov E et al., 2007, Mol Cell, 28, p328-336.
- “hsa-miR-1225-3p” is known as “hsa-mir-1225” (miRBase Accession No. MI0006311, SEQ ID NO: 307) having a hairpin-like structure as a precursor.
- hsa-miR-4783-3p gene or “hsa-miR-4783-3p” refers to the hsa-miR-4783-3p gene described in SEQ ID NO: 576 (miRBase Accession No. MIMAT0019947) and other species homologues or orthologues are included.
- the hsa-miR-4783-3p gene can be obtained by the method described in Persson H et al., 2011, Cancer Res, 71, p78-86.
- “hsa-miR-4783-3p” is known as “hsa-mir-4783” (miRBase Accession No. MI0017428, SEQ ID NO: 593) having a hairpin-like structure as a precursor.
- hsa-miR-4448 gene or “hsa-miR-4448” refers to the hsa-miR-4448 gene (miRBase Accession No. MIMAT0018967) described in SEQ ID NO: 577 and other biological species. Homologs or orthologs are included.
- the hsa-miR-4448 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- “hsa-miR-4448” is known as “hsa-mir-4448” (miRBase Accession No. MI0016791, SEQ ID NO: 594) having a hairpin-like structure as a precursor.
- hsa-miR-4534 gene or “hsa-miR-4534” refers to the hsa-miR-4534 gene (miRBase Accession No. MIMAT0019073) described in SEQ ID NO: 578 or other biological species. Homologs or orthologs are included.
- the hsa-miR-4534 gene can be obtained by the method described in Jim DD et al., 2010, Blood, 116, e118-e127.
- “Hsa-miR-4534” is known as “hsa-mir-4534” (miRBase Accession No. MI0016901, SEQ ID NO: 595) having a hairpin-like structure as a precursor.
- hsa-miR-1307-3p gene or “hsa-miR-1307-3p” refers to the hsa-miR-1307-3p gene described in SEQ ID NO: 579 (miRBase Accession No. MIMAT0005951) and other species homologues or orthologues are included.
- the hsa-miR-1307-3p gene can be obtained by the method described in Morin RD et al., 2008, Genome Res, 18, p610-621.
- “Hsa-miR-1307-3p” is known as “hsa-mir-1307” (miRBase Accession No. MI0006444, SEQ ID NO: 596), which has a hairpin-like structure as a precursor.
- miRNA when mature miRNA is cleaved as a mature miRNA from an RNA precursor having a hairpin-like structure, one to several bases before or after the sequence may be cleaved or long, or base substitution may occur. And is referred to as isomiR (Morin RD. Et al., 2008, Genome Res., Vol. 18, p.610-621).
- miRBBase Release 20 in addition to the nucleotide sequence represented by any of SEQ ID NOs: 1 to 174 and 561 to 579, the nucleotide sequence represented by any of SEQ ID NOs: 355 to 560 and 597 to 618 called numerous isomiRs. Variants and fragments are also shown.
- mutants can also be obtained as miRNA having the base sequence represented by any of SEQ ID NOs: 1 to 174 and 561 to 579. That is, SEQ ID NOs: 5, 8, 9, 11, 18, 20, 22, 23, 24, 28, 29, 30, 32, 34, 37, 40, 41, 47, 48, 49, 51, 52 of the present invention.
- polynucleotides that are isomiRs of SEQ ID NOS: 1 to 174 and 561 to 579 registered in miRBase. Further, examples of the polynucleotide containing the nucleotide sequence represented by any of SEQ ID NOs: 1 to 174 and 561 to 579 are represented by any of the precursors SEQ ID NOs: 175 to 354 and 579 to 596, respectively. A polynucleotide is mentioned.
- nucleic acid probe or primer used in the present invention binds to a specific target nucleic acid and cannot substantially bind to another nucleic acid.
- the present invention makes it possible to detect lung cancer easily and with high accuracy.
- This figure shows hsa-miR-1908-5p represented by SEQ ID NO: 22 generated from hsa-mir-1908 represented by the precursor SEQ ID NO: 179, and hsa-miR represented by SEQ ID NO: 5.
- the relationship of the base sequence of -1908-3p is shown.
- the horizontal line in the figure shows the threshold value (10.08) for discriminating both groups, optimized by Fisher's discriminant analysis.
- the expression level measurement value of -miR-6836-3p (SEQ ID NO: 2) is shown as the vertical axis.
- the dotted line in the figure indicates a discrimination boundary for discriminating both groups having a discrimination score of 0.
- B Eight lung cancer patients, 51 healthy subjects, 23 pancreatic cancer patients, 38 biliary cancer patients, 18 colorectal cancer patients, 15 stomach cancer patients, 18 esophageal cancer patients selected as a test sample group Hsa-miR-6768-5p (SEQ ID NO: 1), hsa-miR-6717-5p (SEQ ID NO: 113), hsa-miR-19b-3p of 19 patients with liver cancer and 8 patients with benign pancreatobiliary disease (SEQ ID NO: 126) and hsa-miR-6073 (SEQ ID NO: 561) expression level measurement, the discriminant score obtained from the discriminant created in the learning sample group is the vertical axis, and the sample group is the horizontal axis It is expressed as The dotted line in the figure indicates a discrimination boundary for discriminating both groups having a discrimination score of 0.
- Lung cancer target nucleic acid The main target nucleic acid as a lung cancer marker for detecting the presence and / or absence of lung cancer or lung cancer cells using the above-defined nucleic acid probe or primer for lung cancer detection of the present invention includes , Hsa-miR-6768-5p, hsa-miR-6636-3p, hsa-miR-6782-5p, hsa-miR-3663-3p, hsa-miR-1908-3p, hsa-miR-6726-5p, hsa -MiR-4258, hsa-miR-1343-3p, hsa-miR-4516, hsa-miR-6875-5p, hsa-miR-4651, hsa-miR-6825-5p, hsa-miR-6840-3p, hsa -MiR-6780
- At least one or more selected from the group consisting of other lung cancer markers that can be combined with these miRNAs can also be preferably used as a target nucleic acid.
- lung cancer markers that can be combined with these miRNAs: hsa-miR-4271, hsa-miR-642b-3p, hsa-miR-6075, hsa-miR-6125, hsa-miR-887-3p, hsa-miR-6651-5p, hsa-miR-6663-5p, hsa-miR-3828-3p, hsa-miR-4443, hsa-miR-3648, hsa-miR-149-3p, hsa-miR-489, hsa-miR-4763-3p, hsa-miR-6729-5p, hsa-miR-3196, hsa-miR-8069, hsa-miR-1268a, hsa-miR-4739, hsa-miR-1268b,
- the miRNA includes, for example, human genes containing the nucleotide sequences represented by any of SEQ ID NOs: 1 to 174 and 561 to 579 (ie, hsa-miR-6768-5p and hsa-miR-6636-3p, respectively).
- a preferred target nucleic acid is a human gene comprising the base sequence represented by any of SEQ ID NOs: 1 to 618, or a transcription product thereof, more preferably the transcription product, ie, miRNA, a pri-miRNA that is a precursor RNA thereof. Or pre-miRNA.
- the first target gene is the hsa-miR-6768-5p gene, their homologues, their transcripts, or their mutants or derivatives. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the second target gene is the hsa-miR-6836-3p gene, their homologues, their transcripts, or their mutants or derivatives. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the third target gene is the hsa-miR-6782-5p gene, their homologues, their transcripts, or their mutants or derivatives. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the fourth target gene is the hsa-miR-3663-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the fifth target gene is the hsa-miR-1908-3p gene, their homologues, their transcripts, or their mutants or derivatives. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the sixth target gene is the hsa-miR-6726-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the seventh target gene is the hsa-miR-4258 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the eighth target gene is the hsa-miR-1343-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the ninth target gene is the hsa-miR-4516 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the tenth target gene is the hsa-miR-6875-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the eleventh target gene is the hsa-miR-4651 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the twelfth target gene is the hsa-miR-6825-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the thirteenth target gene is the hsa-miR-6840-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 14th target gene is the hsa-miR-6780b-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the fifteenth target gene is the hsa-miR-6749-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the sixteenth target gene is the hsa-miR-8063 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 17th target gene is the hsa-miR-6784-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 18th target gene is the hsa-miR-3679-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the nineteenth target gene is the hsa-miR-3184-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the twentieth target gene is the hsa-miR-663b gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 21st target gene is the hsa-miR-6880-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 22nd target gene is the hsa-miR-1908-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 23rd target gene is the hsa-miR-92a-2-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 24th target gene is the hsa-miR-7975 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 25th target gene is the hsa-miR-7110-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the twenty-sixth target gene is the hsa-miR-6842-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 27th target gene is the hsa-miR-6857-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the twenty-eighth target gene is the hsa-miR-5572 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 29th target gene is the hsa-miR-3197 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 30th target gene is the hsa-miR-6131 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the thirty-first target gene is the hsa-miR-6889-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the thirty-second target gene is the hsa-miR-4454 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 33rd target gene is the hsa-miR-1199-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 34th target gene is the hsa-miR-1247-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 35th target gene is an hsa-miR-6800-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the thirty-sixth target gene is the hsa-miR-6872-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 37th target gene is the hsa-miR-4649-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 38th target gene is an hsa-miR-6791-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 39th target gene is the hsa-miR-4433b-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 40th target gene is the hsa-miR-3135b gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 41st target gene is the hsa-miR-128-2-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the forty-second target gene is the hsa-miR-4675 gene, their homologs, their transcripts, or their mutants or derivatives. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 43rd target gene is the hsa-miR-4472 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 44th target gene is the hsa-miR-6785-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 45th target gene is the hsa-miR-6741-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 46th target gene is the hsa-miR-7777 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 47th target gene is the hsa-miR-3665 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 48th target gene is the hsa-miR-128-1-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 49th target gene is the hsa-miR-4286 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 50th target gene is the hsa-miR-6765-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 51st target gene is the hsa-miR-4632-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 52nd target gene is the hsa-miR-365a-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 53rd target gene is an hsa-miR-6088 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 54th target gene is the hsa-miR-6816-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 55th target gene is the hsa-miR-6885-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 56th target gene is the hsa-miR-711 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 57th target gene is the hsa-miR-6765-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 58th target gene is the hsa-miR-3180 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 59th target gene is the hsa-miR-4442 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 60th target gene is an hsa-miR-4792 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 61st target gene is the hsa-miR-6721-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 62nd target gene is the hsa-miR-6798-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 63rd target gene is the hsa-miR-3162-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 64th target gene is the hsa-miR-6126 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 65th target gene is the hsa-miR-4758-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 66th target gene is the hsa-miR-2392 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 67th target gene is the hsa-miR-486-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 68th target gene is the hsa-miR-6727-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 69th target gene is the hsa-miR-4728-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 70th target gene is the hsa-miR-6746-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 71st target gene is the hsa-miR-4270 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 72nd target gene is the hsa-miR-3940-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 73rd target gene is the hsa-miR-4725-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 74th target gene is the hsa-miR-7108-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 75th target gene is the hsa-miR-3656 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 76th target gene is the hsa-miR-6879-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 77th target gene is the hsa-miR-6738-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 78th target gene is the hsa-miR-1260a gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 79th target gene is the hsa-miR-4446-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 80th target gene is the hsa-miR-3131 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 81st target gene is the hsa-miR-4463 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 82nd target gene is the hsa-miR-3185 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 83rd target gene is the hsa-miR-6870-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 84th target gene is an hsa-miR-6679-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 85th target gene is the hsa-miR-1273g-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 86th target gene is the hsa-miR-8059 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 87th target gene is the hsa-miR-4697-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 88th target gene is the hsa-miR-4675 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 89th target gene is the hsa-miR-4433-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 90th target gene is the hsa-miR-4257 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 91st target gene is the hsa-miR-1915-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 92nd target gene is the hsa-miR-4417 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 93rd target gene is the hsa-miR-1343-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 94th target gene is the hsa-miR-6781-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 95th target gene is the hsa-miR-4695-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 96th target gene is an hsa-miR-1237-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 97th target gene is the hsa-miR-6775-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 98th target gene is the hsa-miR-7845-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 99th target gene is the hsa-miR-4746-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 100th target gene is the hsa-miR-7641 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 101st target gene is the hsa-miR-7847-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 102nd target gene is the hsa-miR-6806-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 103rd target gene is the hsa-miR-4467 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 104th target gene is the hsa-miR-4726-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 105th target gene is the hsa-miR-4648 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 106th target gene is the hsa-miR-6089 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 107th target gene is the hsa-miR-1260b gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 108th target gene is the hsa-miR-4532 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 109th target gene is the hsa-miR-5195-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 110th target gene is the hsa-miR-3188 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 111th target gene is the hsa-miR-6848-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 112th target gene is the hsa-miR-1233-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 113th target gene is the hsa-miR-6717-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 114th target gene is the hsa-miR-3195 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 115th target gene is the hsa-miR-6757-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 116th target gene is the hsa-miR-8072 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 117th target gene is the hsa-miR-4745-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 118th target gene is the hsa-miR-6511a-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 119th target gene is the hsa-miR-6767-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 120th target gene is the hsa-miR-371a-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 121st target gene is the hsa-miR-1227-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 122nd target gene is the hsa-miR-7150 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 123rd target gene is the hsa-miR-1915-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 124th target gene is the hsa-miR-187-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. To date, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 125th target gene is the hsa-miR-614 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. To date, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 126th target gene is the hsa-miR-19b-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- a report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer Patent Document 1.
- the 127th target gene is the hsa-miR-1225-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. To date, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 128th target gene is the hsa-miR-451a gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. To date, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 129th target gene is the hsa-miR-939-5p gene, their homologues, their transcription products, or their mutants or derivatives. To date, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 130th target gene is the hsa-miR-223-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. To date, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 131st target gene is the hsa-miR-1228-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- a report that changes in the expression of this gene or its transcription product can serve as a marker for lung cancer Patent Document 2.
- the 132nd target gene is the hsa-miR-125a-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. To date, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 133rd target gene is the hsa-miR-92b-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. To date, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 134th target gene is the hsa-miR-22-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. To date, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 135th target gene is the hsa-miR-4271 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 136th target gene is the hsa-miR-642b-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 137th target gene is the hsa-miR-6075 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 138th target gene is the hsa-miR-6125 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 139th target gene is the hsa-miR-887-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 140th target gene is the hsa-miR-6851-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 141st target gene is the hsa-miR-6673-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 142nd target gene is the hsa-miR-3928-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the target gene 143 is the hsa-miR-4443 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 144th target gene is the hsa-miR-3648 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 145th target gene is the hsa-miR-149-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 146th target gene is the hsa-miR-4687 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 147th target gene is the hsa-miR-4763-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 148th target gene is the hsa-miR-6729-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 149th target gene is the hsa-miR-3196 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 150th target gene is the hsa-miR-8069 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 151st target gene is the hsa-miR-1268a gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- Patent Document 2 There has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 152th target gene is the hsa-miR-4739 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 153rd target gene is the hsa-miR-1268b gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 154th target gene is the hsa-miR-5698 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 155th target gene is the hsa-miR-6752-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 156th target gene is the hsa-miR-4507 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 157th target gene is the hsa-miR-564 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 158th target gene is the hsa-miR-4497 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 159th target gene is the hsa-miR-6877-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 160th target gene is the hsa-miR-6087 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 161st target gene is the hsa-miR-4731-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 162nd target gene is the hsa-miR-615-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 163rd target gene is the hsa-miR-760 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 164th target gene is the hsa-miR-6891-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 165th target gene is the hsa-miR-6687-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 166th target gene is the hsa-miR-4525 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 167th target gene is the hsa-miR-1914-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 168th target gene is the hsa-miR-619-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 169th target gene is the hsa-miR-5001-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 170th target gene is the hsa-miR-6722-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 171st target gene is the hsa-miR-3621 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 172nd target gene is the hsa-miR-4298 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 173rd target gene is the hsa-miR-675-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 174th target gene is the hsa-miR-4655-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. Until now, there has been no report that changes in the expression of this gene or its transcript can serve as a marker for lung cancer.
- the 175th target gene is the hsa-miR-6073 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can serve as markers for lung cancer.
- the 176th target gene is the hsa-miR-6845-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can serve as markers for lung cancer.
- the 177th target gene is the hsa-miR-6769b-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can serve as markers for lung cancer.
- the 178th target gene is the hsa-miR-4665-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can serve as markers for lung cancer.
- the 179th target gene is the hsa-miR-1913 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can serve as markers for lung cancer.
- the 180th target gene is the hsa-miR-1228-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can serve as markers for lung cancer.
- the 181st target gene is an hsa-miR-940 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can serve as markers for lung cancer.
- the 182nd target gene is the hsa-miR-296-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can serve as markers for lung cancer.
- the 183rd target gene is an hsa-miR-4690-5p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can serve as markers for lung cancer.
- the 184th target gene is the hsa-miR-548q gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can serve as markers for lung cancer.
- the 185th target gene is the hsa-miR-663a gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can serve as markers for lung cancer.
- the 186th target gene is the hsa-miR-1249 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can serve as markers for lung cancer.
- the 187th target gene is the hsa-miR- 1202 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can serve as markers for lung cancer.
- the 188th target gene is the hsa-miR-7113-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can serve as markers for lung cancer.
- the 189th target gene is the hsa-miR-1225-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can serve as markers for lung cancer.
- the 190th target gene is the hsa-miR-4783-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can serve as markers for lung cancer.
- the 191st target gene is the hsa-miR-4448 gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof. So far, there is no report that changes in the expression of genes or their transcripts can serve as markers for lung cancer.
- the 192nd target gene is the hsa-miR-4534 gene, their homologs, their transcripts, or their mutants or derivatives. So far, there is no report that changes in the expression of genes or their transcripts can serve as markers for lung cancer.
- the 193rd target gene is the hsa-miR-1307-3p gene, a homologue thereof, a transcription product thereof, or a mutant or derivative thereof.
- a report that changes in expression of a gene or a transcription product thereof can be a marker for lung cancer Patent Document 3).
- nucleic acid probe or primer for detecting lung cancer a nucleic acid capable of specifically binding to the target nucleic acid as the lung cancer marker is used as a nucleic acid for detecting or diagnosing lung cancer, such as a nucleic acid probe or primer. Can do.
- the nucleic acid probe or primer that can be used for detecting lung cancer or diagnosing lung cancer is a target nucleic acid as the above-mentioned lung cancer marker, such as hsa-miR-6768-5p derived from human, hsa- miR-6683-3p, hsa-miR-6782-5p, hsa-miR-3663-3p, hsa-miR-1908-3p, hsa-miR-6726-5p, hsa-miR-4258, hsa-miR-1343- 3p, hsa-miR-4516, hsa-miR-6875-5p, hsa-miR-4651, hsa-miR-6825-5p, hsa-miR-6840-3p, hsa-miR-6780b-5p, hsa-miR- 6749-5p
- the above target nucleic acids may increase or decrease in their expression level depending on the type of the target nucleic acid in a subject suffering from lung cancer compared to a healthy subject (hereinafter referred to as “increase / decrease”). Therefore, the nucleic acid of the present invention measures the expression level of the target nucleic acid in body fluid derived from a subject suspected of having lung cancer (for example, human) and body fluid derived from a healthy body, and compares them to detect lung cancer. Can be used effectively.
- the nucleic acid probe or primer usable in the present invention specifically binds to a polynucleotide comprising a base sequence represented by at least one of SEQ ID NOs: 1-125, 127-130, 132-134, and 561-578.
- the nucleic acid probe or primer that can be used in the present invention further includes a nucleic acid probe that can specifically bind to a polynucleotide consisting of the base sequence represented by at least one of SEQ ID NOs: 126, 131, and 579, or SEQ ID NO: 126, Primers for amplifying a polynucleotide comprising a base sequence represented by at least one of 131 and 579 can be included.
- the nucleic acid probe or primer that can be used in the present invention is further a nucleic acid probe that can specifically bind to a polynucleotide consisting of the base sequence represented by at least one of SEQ ID NOs: 135 to 174, or A primer for amplifying a polynucleotide comprising the base sequence represented by at least one can be further included.
- the nucleic acid probe or primer includes a polynucleotide group including a base sequence represented by any of SEQ ID NOs: 1 to 618, or a base sequence in which u is t in the base sequence, and a complementary sequence thereof
- nucleic acid probes or primers that can be used in the present invention are one or more polynucleotides selected from the group consisting of the following polynucleotides (a) to (e).
- A a polynucleotide comprising the base sequence represented by any of SEQ ID NOs: 1-125, 127-130, 132-134, and 561-578, or the base sequence in which u is t in the base sequence, A variant thereof, a derivative thereof, or a fragment thereof comprising 15 or more consecutive bases
- B a polynucleotide comprising the base sequence represented by any of SEQ ID NOs: 1-125, 127-130, 132-134, and 561-578
- C a base complementary to the base sequence represented by any of SEQ ID NOs: 1-125, 127-130, 132-134, and 561-578, or the base sequence in which u is t in the base sequence
- the nucleic acid probe or primer usable in the present invention is further shown in the following (f) to (j) in addition to at least one polynucleotide selected from the above polynucleotides (a) to (e).
- a polynucleotide selected from the group consisting of polynucleotides can be included.
- Its fragments including (G) a polynucleotide comprising the base sequence represented by any of SEQ ID NOs: 126, 131 and 579, (H) a polynucleotide comprising a nucleotide sequence complementary to the nucleotide sequence represented by any of SEQ ID NOs: 126, 131 and 579, or a nucleotide sequence in which u is t in the nucleotide sequence, a variant thereof, or a derivative thereof Or fragments thereof containing 15 or more consecutive bases, (I) a polynucleotide comprising a nucleotide sequence complementary to the nucleotide sequence represented by any of SEQ ID NOs: 126, 131 and
- the nucleic acid probe or primer that can be used in the present invention is further shown in the following (k) to (o) in addition to at least one polynucleotide selected from the above polynucleotides (a) to (j).
- a polynucleotide selected from the group consisting of polynucleotides can be included.
- the fragment containing 15 or more consecutive bases refers to, for example, 15 to less than the total number of bases in the sequence, 17 to less than the total number of bases in the sequence, 19 To less than the total number of bases in the sequence, etc., but not limited thereto.
- Any of the above polynucleotides or fragments thereof used in the present invention may be DNA or RNA.
- the above-mentioned polynucleotide that can be used in the present invention can be prepared using a general technique such as a DNA recombination technique, a PCR method, or a method using a DNA / RNA automatic synthesizer.
- DNA recombination techniques and PCR methods are described in, for example, Ausubel et al., Current Protocols in Molecular Biology, John Willy & Sons, US (1993); Sambrook et al., Molecular Cloning A Laboratory S. The techniques described can be used.
- Such a nucleic acid probe or primer can be chemically synthesized using an automatic DNA synthesizer.
- the phosphoramidite method is used for this synthesis, and single-stranded DNA of up to about 100 bases can be automatically synthesized by this method.
- Automatic DNA synthesizers are commercially available from, for example, Polygen, ABI, Applied BioSystems, and the like.
- the polynucleotide of the present invention can also be prepared by a cDNA cloning method.
- a cDNA cloning method for example, microRNA Cloning Kit Wako can be used as the cDNA cloning technique.
- the nucleic acid probe and primer sequences for detecting a polynucleotide comprising the nucleotide sequence represented by any of SEQ ID NOs: 1 to 174 and 561 to 579 are present in vivo as miRNA or a precursor thereof.
- the base sequences represented by SEQ ID NO: 5 and SEQ ID NO: 22 are generated from the precursor represented by SEQ ID NO: 179, and this precursor has a hairpin-like structure as shown in FIG.
- the base sequences represented by SEQ ID NO: 5 and SEQ ID NO: 22 have mismatched sequences.
- a completely complementary base sequence to the base sequence represented by SEQ ID NO: 5 or 22 is not naturally generated in vivo. Therefore, the nucleic acid probe and primer for detecting the base sequence represented by any one of SEQ ID NOs: 1 to 174 and 561 to 579 have an artificial base sequence that does not exist in the living body.
- Lung cancer detection kit or device The present invention also includes a polynucleotide (including a variant, fragment, or derivative) that can be used as a nucleic acid probe or primer in the present invention for measuring a target nucleic acid that is a lung cancer marker.
- a lung cancer detection kit or device comprising one or more of the following may be referred to as detection polynucleotides).
- the target nucleic acid that is a lung cancer marker in the present invention is preferably selected from the following group 1: hsa-miR-6768-5p, hsa-miR-6636-3p, hsa-miR-6782-5p, hsa-miR- 3663-3p, hsa-miR-1908-3p, hsa-miR-6726-5p, hsa-miR-4258, hsa-miR-1343-3p, hsa-miR-4516, hsa-miR-6875-5p, hsa- miR-4651, hsa-miR-6825-5p, hsa-miR-6840-3p, hsa-miR-6780b-5p, hsa-miR-6649-5p, hsa-miR-8063, hsa-miR-6784-5p, h
- the additional target nucleic acid that can optionally be used for the measurement is selected from the following group 2: hsa-miR-19b-3p, hsa-miR-1228-5p and hsa-miR-1307-3p.
- Additional target nucleic acids that can optionally be used for further measurement are selected from the following group 3: hsa-miR-4271, hsa-miR-642b-3p, hsa-miR-6075, hsa-miR-6125, hsa -MiR-887-3p, hsa-miR-6651-5p, hsa-miR-6663-5p, hsa-miR-3928-3p, hsa-miR-4443, hsa-miR-3648, hsa-miR-149-3p , Hsa-miR-4689, hsa-miR-4763-3p, hsa-miR-6729-5p, hsa-miR-3196, hsa-miR-8069, hsa-miR-1268a, hsa-miR-4739, hsa
- the kit or device of the present invention is a nucleic acid that can specifically bind to a target nucleic acid that is the above-mentioned lung cancer marker, preferably the nucleic acid probe or primer described in 2 above, specifically the polynucleotides described in 2 above 1 or a plurality of polynucleotides selected from the above or variants thereof.
- the kit or device of the present invention includes a nucleotide sequence represented by any one of SEQ ID NOs: 1-125, 127-130, 132-134, and 561-578, or u in the nucleotide sequence.
- the kit or device of the present invention further comprises a polynucleotide comprising (or consisting of) the base sequence represented by any of SEQ ID NOs: 126 and 131, or the base sequence in which u is t in the base sequence, and its complement
- a polynucleotide comprising (or consisting of) a target sequence, a polynucleotide that hybridizes with these polynucleotides under stringent conditions, or a variant or fragment comprising 15 or more consecutive bases of those polynucleotide sequences, One or more can be included.
- the kit or device of the present invention further comprises a polynucleotide comprising (or consisting of) the nucleotide sequence represented by any of SEQ ID NOs: 135 to 174, or a nucleotide sequence in which u is t in the nucleotide sequence, and its complement
- a polynucleotide comprising (or consisting of) a target sequence, a polynucleotide that hybridizes with these polynucleotides under stringent conditions, or a variant or fragment comprising 15 or more consecutive bases of those polynucleotide sequences, One or more can be included.
- the fragment that can be included in the kit or device of the present invention is, for example, one or more, preferably two or more polynucleotides selected from the group consisting of the following (1) to (3).
- (1) In the base sequence represented by any one of SEQ ID NOs: 1-125, 127-130, 132-134, and 561-578, 15 or more consecutive in the base sequence in which u is t or its complementary sequence A polynucleotide comprising a selected base.
- (3) A polynucleotide comprising 15 or more consecutive bases in a base sequence represented by any one of SEQ ID NOs: 135 to 174, wherein u is t, or a complementary sequence thereof.
- the polynucleotide is a base sequence represented by any of SEQ ID NOs: 1-125, 127-130, 132-134, and 561-578, or a base in which u is t in the base sequence
- the polynucleotide is a polynucleotide comprising the base sequence represented by any of SEQ ID NOs: 126, 134 and 579, or a base sequence in which u is t in the base sequence, its complementary A polynucleotide comprising a sequence, a polynucleotide that hybridizes with these polynucleotides under stringent conditions, or a variant containing 15 or more, preferably 17 or more, more preferably 19 or more consecutive bases thereof.
- the polynucleotide is a polynucleotide comprising a base sequence represented by any of SEQ ID NOs: 135 to 174, or a base sequence in which u is t in the base sequence, or a complementary sequence thereof. Or a polynucleotide that hybridizes with these polynucleotides under stringent conditions, or a variant containing 15 or more, preferably 17 or more, more preferably 19 or more consecutive bases thereof.
- the fragment may be a polynucleotide comprising 15 or more, preferably 17 or more, more preferably 19 or more consecutive bases.
- the size of a polynucleotide fragment is, for example, 15 to less than the total number of bases in the sequence, 17 to less than the total number of bases in the sequence, and 19 to less than the total number of bases in the sequence.
- the number of bases in the range is, for example, 15 to less than the total number of bases in the sequence, 17 to less than the total number of bases in the sequence, and 19 to less than the total number of bases in the sequence. The number of bases in the range.
- kits or device of the present invention include SEQ ID NOs shown in Table 1 (SEQ ID NOS: 1 to 174 and 561 to 579 corresponding to the miRNA markers in Table 1).
- SEQ ID NOS: 1 to 174 and 561 to 579 corresponding to the miRNA markers in Table 1 SEQ ID NOs shown in Table 1
- the above-mentioned polynucleotides relating to combinations of the above may be mentioned, they are merely illustrative, and all other various possible combinations are intended to be included in the present invention.
- the above-mentioned combination constituting the kit or device for distinguishing lung cancer from healthy bodies is a combination of two or more of the above-mentioned polynucleotides consisting of the base sequences represented by the sequence numbers shown in Table 1. Usually, sufficient performance can be obtained with a combination of the two.
- the above-mentioned poly consisting of the base sequences represented by SEQ ID NOs: 1 to 174 and 561 to 579
- the two combinations composed of nucleotides at least one polynucleotide comprising a nucleotide sequence represented by SEQ ID NOs: 1-125, 127-130, 132-174, and 561-578 newly found
- a combination comprising two or more is preferred.
- polynucleotides having cancer type specificity that can distinguish lung cancer from not only healthy subjects but also other cancers, for example, SEQ ID NOs: 1, 2, 3, 4, 5, 7, 9, 10, 11, 19, 21, 26, 29, 31, 52, 53, 63, 65, 69, 72, 87, 90, 113, 124, 125, 126, 128, 130, 143, 148, 160, 162, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571, 572, 573, 574, 575, 576, 577, 578 and 579.
- a combination of a plurality of polynucleotides selected from the cancer species-specific polynucleotide group 1 is a combination of cancer species-specific polynucleotides that can distinguish lung cancer from not only healthy subjects but also other cancers. More preferred.
- a combination comprising at least one polynucleotide selected from the group consisting of these polynucleotides hereinafter, this group is referred to as “cancer type-specific polynucleotide group 2” is more preferable.
- the number of combinations of the above-mentioned cancer species-specific polynucleotides is 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, or more. However, it is more preferably a combination of four or more, and usually a combination of four can provide sufficient performance.
- a polynucleotide comprising the nucleotide sequence represented by SEQ ID NO: 1 or a complementary sequence thereof and the sequence number of 5 polynucleotides selected from the cancer type-specific polynucleotide group 1 are represented. And a combination with a polynucleotide comprising a base sequence or a complementary sequence thereof.
- polynucleotide comprising the nucleotide sequence represented by SEQ ID NO: 2 or its complementary sequence and five polynucleotides selected from the cancer type-specific polynucleotide group 1. And a combination with a polynucleotide comprising a base sequence or a complementary sequence thereof.
- a polynucleotide comprising the nucleotide sequence represented by SEQ ID NO: 3 or a complementary sequence thereof and the five polynucleotides selected from the cancer species-specific polynucleotide group 1 And a combination with a polynucleotide comprising a base sequence or a complementary sequence thereof.
- polynucleotide selected from the polynucleotide consisting of the base sequence represented by SEQ ID NO: 10 or its complementary sequence and the cancer type-specific polynucleotide group 1. And a combination with a polynucleotide comprising a base sequence or a complementary sequence thereof.
- polynucleotide consisting of the base sequence represented by SEQ ID NO: 63 or its complementary sequence and five polynucleotides selected from the cancer type-specific polynucleotide group 1. And a combination with a polynucleotide comprising a base sequence or a complementary sequence thereof.
- polynucleotide selected from the polynucleotide consisting of the base sequence represented by SEQ ID NO: 113 or its complementary sequence and the cancer type specific polynucleotide group 1. And a combination with a polynucleotide comprising a base sequence or a complementary sequence thereof.
- polynucleotide selected from the polynucleotide consisting of the base sequence represented by SEQ ID NO: 124 or its complementary sequence and the cancer type-specific polynucleotide group 1. And a combination with a polynucleotide comprising a base sequence or a complementary sequence thereof.
- a polynucleotide comprising the nucleotide sequence represented by SEQ ID NO: 125 or a complementary sequence thereof and the sequence number of five polynucleotides selected from the cancer type-specific polynucleotide group 1 And a combination with a polynucleotide comprising a base sequence or a complementary sequence thereof.
- polynucleotide selected from the polynucleotide consisting of the base sequence represented by SEQ ID NO: 126 or its complementary sequence and the cancer type-specific polynucleotide group 1. And a combination with a polynucleotide comprising a base sequence or a complementary sequence thereof.
- polynucleotide selected from the polynucleotide consisting of the base sequence represented by SEQ ID NO: 128 or its complementary sequence and the cancer type-specific polynucleotide group 1.
- SEQ ID NOs of 5 polynucleotides selected from the polynucleotide consisting of the base sequence represented by SEQ ID NO: 130 or its complementary sequence and the cancer type-specific polynucleotide group 1. And a combination with a polynucleotide comprising a base sequence or a complementary sequence thereof.
- polynucleotide comprising the nucleotide sequence represented by SEQ ID NO: 143 or its complementary sequence and five polynucleotides selected from the cancer species-specific polynucleotide group 1. And a combination with a polynucleotide comprising a base sequence or a complementary sequence thereof.
- polynucleotide selected from the polynucleotide consisting of the base sequence represented by SEQ ID NO: 160 or its complementary sequence and the cancer type-specific polynucleotide group 1. And a combination with a polynucleotide comprising a base sequence or a complementary sequence thereof.
- SEQ ID NOs of 5 polynucleotides selected from the polynucleotide consisting of the base sequence represented by SEQ ID NO: 561 or its complementary sequence and the cancer type-specific polynucleotide group 1. And a combination with a polynucleotide comprising a base sequence or a complementary sequence thereof.
- SEQ ID NO: 568 of the polynucleotide consisting of the base sequence represented by SEQ ID NO: 568 or its complementary sequence and the five polynucleotides selected from the cancer type-specific polynucleotide group 1.
- a polynucleotide comprising the nucleotide sequence represented by SEQ ID NO: 573 or a complementary sequence thereof and the sequence number of five polynucleotides selected from the cancer type-specific polynucleotide group 1 And a combination with a polynucleotide comprising a base sequence or a complementary sequence thereof.
- SEQ ID NOs of 5 polynucleotides selected from the polynucleotide consisting of the base sequence represented by SEQ ID NO: 578 or its complementary sequence and the cancer type-specific polynucleotide group 1. And a combination with a polynucleotide comprising a base sequence or a complementary sequence thereof.
- the kit of the present invention can also contain an antibody for measuring a known lung cancer test marker such as CEA or CYFRA 21-1.
- the polynucleotides contained in the kit of the present invention can be individually or arbitrarily combined and packaged in different containers.
- the kit of the present invention can include a kit for extracting nucleic acid (for example, total RNA) from body fluids, cells or tissues, a fluorescent substance for labeling, an enzyme and medium for nucleic acid amplification, instructions for use, and the like.
- nucleic acid for example, total RNA
- the device of the present invention is a device for measuring a cancer marker in which a nucleic acid such as a polynucleotide according to the present invention described above is bound or attached to a solid phase, for example.
- a nucleic acid such as a polynucleotide according to the present invention described above is bound or attached to a solid phase
- the material of the solid phase are plastic, paper, glass, silicon, and the like. From the viewpoint of ease of processing, a preferable material of the solid phase is plastic.
- the shape of the solid phase is arbitrary, for example, a square shape, a round shape, a strip shape, a film shape and the like.
- the device of the present invention includes, for example, a device for measurement by a hybridization technique, and specific examples include a blotting device, a nucleic acid array (for example, a microarray, a DNA chip, an RNA chip, etc.).
- a blotting device for example, a blotting device, a nucleic acid array (for example, a microarray, a DNA chip, an RNA chip, etc.).
- the nucleic acid array technology uses a high-density dispenser called a spotter or arrayer on the surface of a solid phase that has been subjected to surface treatment such as introduction of functional groups such as L-lysine coat, amino group, and carboxyl group as necessary.
- the method of spotting nucleic acids the method of spraying nucleic acids onto a solid phase using an inkjet that ejects fine droplets from a nozzle with a piezoelectric element, the method of sequentially synthesizing nucleotides on a solid phase, etc.
- an array such as a chip is produced by binding or attaching the nucleic acids one by one, and the target nucleic acid is measured using hybridization using this array.
- the kit or device of the present invention comprises at least one or more, preferably at least two, more preferably at least three, most preferably at least five or all of the polyRNAs of the above Group 1 lung cancer markers. Nucleic acids that can specifically bind to each of the nucleotides are included.
- the kit or device of the present invention may further optionally include at least one, preferably at least two, more preferably at least three, and most preferably at least five or more miRNAs that are Group 2 lung cancer markers as described above. To a nucleic acid capable of specifically binding to each of all the polynucleotides.
- the kit or device of the present invention may further optionally include at least one, preferably at least two, more preferably at least three, most preferably at least five or more of the above-mentioned group 3 lung cancer markers.
- at least one preferably at least two, more preferably at least three, most preferably at least five or more of the above-mentioned group 3 lung cancer markers.
- the kit or device of the present invention can be used for the detection of lung cancer described in 4 below.
- the present invention further includes the following group A: hsa-miR in a sample using the kit or device of the present invention described in 3 (including the above-described nucleic acid that can be used in the present invention).
- the above method of the present invention enables early diagnosis of cancer with minimal invasiveness, high sensitivity and specificity, thereby leading to early treatment and improvement of prognosis, as well as monitoring disease aversion and surgical Enables monitoring of the effectiveness of radiotherapeutic and chemotherapeutic treatments.
- RNA extraction reagent in 3D-Gene 3D-Gene (registered trademark) RNA extraction reagent liquid sample kit (Toray Industries, Inc.) is added.
- a general acidic phenol method Acid Guanidinium-Phenol-Chloroform (AGPC) method
- Trizol registered trademark
- Trizol Trizol
- It may be prepared by adding an RNA extraction reagent containing acidic phenol such as (Life Technologies) or Isogen (Nippon Gene).
- kits such as miRNeasy (registered trademark) Mini Kit (Qiagen) can be used, but are not limited to these methods.
- the present invention also provides the use of the kit or device of the present invention for in vitro detection of an expression product of a lung cancer-derived miRNA gene in a specimen derived from a subject.
- the kit or device is used as described above, and includes a single or any possible combination of polynucleotides that can be used in the present invention.
- the polynucleotide contained in the kit or device of the present invention can be used as a probe or primer.
- a primer Life Technologies' TaqMan (registered trademark) MicroRNA Assays, Qiagen's miScript PCR System, and the like can be used, but are not limited thereto.
- Polynucleotides contained in the kit or device of the present invention are quantitatively determined by hybridization techniques such as Northern blotting, Southern blotting, in situ hybridization, Northern hybridization, Southern hybridization, and quantitative RT-PCR.
- a known method for specifically detecting a specific gene such as an amplification technique, it can be used as a primer or a probe according to a conventional method.
- body fluid such as blood, serum, plasma, urine, etc. of the subject is collected according to the type of detection method used.
- total RNA prepared by the above-described method may be used, or various polynucleotides containing cDNA prepared based on the RNA may be used.
- the kit or device of the present invention is useful for diagnosis of lung cancer or detection of the presence or absence of disease.
- detection of lung cancer using the kit or device is performed by using a nucleic acid probe contained in the kit or device from a subject suspected of having lung cancer using a specimen such as blood, serum, plasma, or urine.
- the detection can be performed in vitro by detecting the expression level of the gene detected with the primer. It is represented by at least one or more of SEQ ID NOs: 1-125, 127-130, 132-134, and 561-578 in a sample such as blood, serum, plasma, urine, etc.
- the expression level of the target miRNA marker measured by a polynucleotide comprising a complementary sequence thereof is in a sample such as blood, serum, plasma or urine of a healthy body.
- the subject can be evaluated as having lung cancer if there is a statistically significant difference compared to their expression level.
- the method of the present invention can be combined with diagnostic imaging methods such as CT examination, MRI examination, and PET examination in addition to chest X-ray examination.
- diagnostic imaging methods such as CT examination, MRI examination, and PET examination in addition to chest X-ray examination.
- the method of the present invention can specifically detect lung cancer and can be substantially distinguished from cancers other than lung cancer.
- the detection method that the expression product of the gene derived from lung cancer is not contained in the specimen using the kit or the device of the present invention or the expression product of the gene derived from lung cancer is included in the blood, serum of the subject,
- One or a plurality of polynucleotides (including mutants, fragments or derivatives) selected from the polynucleotide group of the present invention are collected from body fluids such as plasma and urine, and the expression level of the target gene contained therein is determined. This includes the evaluation of the presence or absence of lung cancer or the detection of lung cancer.
- the lung cancer detection method of the present invention for example, in a lung cancer patient, when a therapeutic agent is administered for improving the disease, the presence or absence of improvement of the disease or the degree of improvement can be evaluated or diagnosed.
- the method of the present invention includes, for example, the following steps (a), (b) and (c): (A) contacting a specimen from a subject with a polynucleotide in a kit or device of the present invention in vitro; (B) measuring the expression level of the target nucleic acid in the specimen using the polynucleotide as a nucleic acid probe or primer; (C) evaluating the presence or absence of lung cancer (cells) in the subject based on the result of (b), Can be included.
- the present invention relates to miR-6768-5p, miR-6636-3p, miR-6782-5p, miR-3663-3p, miR-1908-3p, miR-6726-5p, miR-4258, miR -1343-3p, miR-4516, miR-6875-5p, miR-4651, miR-6825-5p, miR-6840-3p, miR-6780b-5p, miR-6649-5p, miR-6863, miR-6784 -5p, miR-3679-5p, miR-3184-5p, miR-663b, miR-6880-5p, miR-1908-5p, miR-92a-2-5p, miR-7975, miR-7110-5p, miR -6842-5p, miR-6857-5p, miR-5572, miR- 197, miR-6131, miR-6889-5p, miR-4454, miR-1199-5p, miR-1247-3p
- a method for detecting lung cancer comprises evaluating in vitro that a subject is suffering from lung cancer or not suffering from lung cancer using the control expression level of a healthy subject.
- evaluation is not an evaluation by a doctor but an evaluation support based on a result of an in vitro examination.
- the target nucleic acid is specifically miR-6768-5p is hsa-miR-6768-5p and miR-6636-3p is hsa-miR-6636.
- miR-6782-5p is hsa-miR-6782-5p
- miR-3663-3-3p is hsa-miR-3663-3p
- miR-1908-3p is hsa-miR-1908-3p
- MiR-6726-5p is hsa-miR-6726-5p
- miR-4258 is hsa-miR-4258
- miR-1343-3p is hsa-miR-1343-3p
- miR-4516 Is hsa-miR-4516 and miR-6875-5p is hsa-miR-6875-5
- MiR-4651 is hsa-miR-4651
- miR-6825-5p is hsa-miR-6825-5p
- miR-6840-3p is hsa-miR-6840-3p
- miR-6780b -5p is hsa-miR-
- the nucleic acid is a polynucleotide shown in the following (a) to (e): (A) a polynucleotide comprising the base sequence represented by any of SEQ ID NOs: 1-125, 127-130, 132-134, and 561-578, or a base sequence in which u is t in the base sequence; A variant thereof, a derivative thereof, or a fragment thereof comprising 15 or more consecutive bases, (B) a polynucleotide comprising the base sequence represented by any of SEQ ID NOs: 1-125, 127-130, 132-134, and 561-578, (C) Complementary to the base sequence represented by any one of SEQ ID NOs: 1-125, 127-130, 132-134, and 561-578, or the base sequence in which u is t in the base sequence A polynucleotide comprising the base sequence, a variant thereof, a derivative
- the method of the present invention further uses a nucleic acid capable of specifically binding to at least one polynucleotide selected from the group consisting of miR-19b-3p, miR-1228-5p and miR-1307-3p. it can.
- nucleic acids are specifically miR-19b-3p is hsa-miR-19b-3p, miR-1228-5p is hsa-miR-1228-5p, and miR-1307-3p is hsa. -MiR-1307-3p.
- such a nucleic acid comprises a polynucleotide shown in the following (f) to (j): (F) a polynucleotide comprising the nucleotide sequence represented by any of SEQ ID NOs: 126, 131 and 579, or a nucleotide sequence in which u is t in the nucleotide sequence, a variant thereof, a derivative thereof, or 15 or more consecutive sequences Its fragments, including (G) a polynucleotide comprising the base sequence represented by any of SEQ ID NOs: 126, 131 and 579, (H) a polynucleotide comprising a nucleotide sequence complementary to the nucleotide sequence represented by any of SEQ ID NOs: 126, 131 and 579, or a nucleotide sequence in which u is t in the nucleotide sequence, a variant thereof, or a derivative thereof Or fragments thereof containing 15
- Such nucleic acids are specifically miR-4271 is hsa-miR-4271, miR-642b-3p is hsa-miR-642b-3p, and miR-6075 is hsa-miR-6075.
- MiR-6125 is hsa-miR-6125
- miR-887-3p is hsa-miR-887-3p
- miR-6851-5p is hsa-miR-6651-5p
- miR-6676-5p Is hsa-miR-6663-5p
- miR-3928-3p is hsa-miR-3928-3p
- miR-4443 is hsa-miR-4443
- miR-3648 is hsa-miR-3648
- MiR-149-3p is hsa-miR-149-3p and miR-4689 is h a-miR-4689
- miR-4763-3p is hsa-miR-4763-3p
- miR-6729-5p is hsa-miR-6729-5p
- miR-3196 is hsa-miR-3196
- MiR-8069 is
- miR-4525 is hsa-miR-4525
- miR-1914-3p is hsa-miR-1914-3p
- miR-619-5p is hsa-miR-619-5p
- miR -5001-5p is hsa-miR-5001-5p
- miR-6722-3p is hsa -MiR-6722-3p
- miR-3621 is hsa-miR-3621
- miR-4298 is hsa-miR-4298
- miR-675-5p is hsa-miR-675-5p
- MiR-4655-5p is hsa-miR-4655-5p.
- such a nucleic acid is a polynucleotide shown in the following (k) to (o): (K) a polynucleotide comprising the nucleotide sequence represented by any of SEQ ID NOs: 135 to 174, or a nucleotide sequence in which u is t in the nucleotide sequence, a variant thereof, a derivative thereof, or 15 or more consecutive bases Its fragments, including (L) a polynucleotide comprising the base sequence represented by any of SEQ ID NOs: 135 to 174, (M) a polynucleotide comprising a nucleotide sequence complementary to the nucleotide sequence represented by any of SEQ ID NOs: 135 to 174, or a nucleotide sequence in which u is t in the nucleotide sequence, a variant thereof, a derivative thereof, or Its fragments containing 15 or more consecutive bases, (N)
- specimens prepared from a biological tissue (preferably lung tissue) of a subject include specimens prepared from a biological tissue (preferably lung tissue) of a subject, body fluid such as blood, serum, plasma, urine and the like.
- body fluid such as blood, serum, plasma, urine and the like.
- a biological tissue extracted by surgery, etc. from which a specimen for measurement can be prepared.
- a subject refers to mammals such as, but not limited to, humans, monkeys, mice, rats, and the like, preferably humans.
- the steps can be changed according to the type of specimen used as a measurement target.
- RNA When RNA is used as a measurement object, detection of lung cancer (cells) is performed, for example, by the following steps (a), (b) and (c): (A) binding RNA prepared from a specimen of a subject or a complementary polynucleotide (cDNA) transcribed therefrom to a polynucleotide in the kit or device of the present invention; (B) Measure RNA derived from a sample bound to the polynucleotide or cDNA synthesized from the RNA by hybridization using the polynucleotide as a nucleic acid probe or by quantitative RT-PCR using the polynucleotide as a primer. Step to do, (C) evaluating the presence or absence of lung cancer (derived gene expression) based on the measurement result of (b) above, Can be included.
- steps (a), (b) and (c) (A) binding RNA prepared from a specimen of a subject or a complementary polynucleotide (cDNA) transcribed
- various hybridization methods can be used.
- a hybridization method for example, Northern blot method, Southern blot method, RT-PCR method, DNA chip analysis method, in situ hybridization method, Northern hybridization method, Southern hybridization method and the like can be used. .
- the presence or absence of each gene in RNA and the expression level thereof can be detected and measured by using the nucleic acid probe that can be used in the present invention.
- the nucleic acid probe (complementary strand) is labeled with a radioisotope (32P, 33P, 35S, etc.) or a fluorescent substance, and is transferred to a nylon membrane or the like according to a conventional method.
- the signal derived from the DNA / RNA double-stranded label (radioisotope or fluorescent substance) formed after hybridization with the RNA was detected with a radiation detector (BAS-1800II (Fuji Photo Film Co., Ltd.), etc.) And a method of detecting and measuring with a fluorescence detector (such as STORM 865 (GE Healthcare)).
- RNA and the expression level thereof can be detected and measured by using the above-described primers that can be used in the present invention.
- a pair of primers of the present invention (the cDNA described above) is prepared so that a region of each target gene can be amplified using a template prepared from RNA derived from biological tissue of a subject according to a conventional method.
- An example is a method of detecting a double-stranded DNA obtained by hybridizing with a cDNA with a normal strand and a reverse strand that bind to the DNA and performing a PCR method by a conventional method.
- the above PCR is performed using a primer previously labeled with a radioisotope or a fluorescent substance, the PCR product is electrophoresed on an agarose gel, and then is detected with ethidium bromide or the like.
- a method of detecting by staining the double-stranded DNA and a method of detecting the double-stranded DNA produced by transferring it to a nylon membrane or the like according to a conventional method and hybridizing with a labeled nucleic acid probe can be included.
- RNA chip or DNA chip in which the nucleic acid probe (single strand or double strand) of the present invention is attached to a substrate (solid phase) is used.
- the region where the nucleic acid probe is attached is called a probe spot, and the region where the nucleic acid probe is not attached is called a blank spot.
- a gene group immobilized on a substrate generally has a name such as a nucleic acid chip, a nucleic acid array, or a microarray, and a DNA or RNA array includes a DNA or RNA macroarray and a DNA or RNA microarray.
- the term “chip” includes all of them.
- 3D-Gene registered trademark
- Human miRNA Oligo chip Toray Industries, Inc.
- the measurement of the DNA chip is not limited.
- an image detector Teyphoon 9410 (GE Healthcare), 3D-Gene (registered trademark) scanner (Toray Industries, Inc.) or the like is used for the signal derived from the label of the nucleic acid probe)
- the method of detecting and measuring can be illustrated.
- stringent conditions refers to the extent to which a nucleic acid probe is larger than other sequences as described above (eg, average of background measurements + standard error of background measurements ⁇ 2 or more). In the measurement value) of the target sequence.
- Stringent conditions are determined by hybridization and subsequent washing conditions.
- the hybridization conditions are not limited, but for example, 30 to 60 ° C. and 1 to 24 hours in a solution containing SSC, surfactant, formamide, dextran sulfate, blocking agent and the like.
- 1 ⁇ SSC is an aqueous solution (pH 7.0) containing 150 mM sodium chloride and 15 mM sodium citrate, and the surfactant contains SDS (sodium dodecyl sulfate), Triton, Tween, or the like.
- More preferable hybridization conditions include 3 to 10 ⁇ SSC and 0.1 to 1% SDS.
- Washing conditions after hybridization include, for example, a solution containing 0.5 ⁇ SSC at 30 ° C. and 0.1% SDS, and 0.2 at 30 ° C. There may be mentioned conditions such as continuous washing with a solution containing x SSC and 0.1% SDS and a 0.05 x SSC solution at 30 ° C. It is desirable that the complementary strand maintain a hybridized state with the target positive strand even when washed under such conditions.
- a complementary strand a strand consisting of a base sequence that is completely complementary to the target positive strand base sequence, and at least 80%, preferably at least 85%, more preferably, the strand. Examples include strands consisting of a base sequence having at least 90% or at least 95% identity, such as at least 98% or at least 99%.
- Examples of conditions for performing PCR using the polynucleotide fragment in the kit of the present invention as a primer include, for example, a PCR buffer having a composition such as 10 mM Tris-HCL (pH 8.3), 50 mM KCL, 1 to 2 mM MgCl 2.
- the Tm value calculated from the primer sequence +5 to 10 ° C. may be treated for 15 seconds to 1 minute.
- TaqMan registered trademark
- MicroRNA Assays Life Technologies
- LNA registered trademark
- MicroRNA PCR Exiqon
- Ncode registered trademark
- miRNA qRT-PCT kit A commercially available measurement kit specially devised to quantitatively measure miRNA, such as (Invitrogen) may be used.
- Calculation of gene expression level is not limited, but, for example, Statistical analysis of gene expression microarray data (Speed T., Chapman and HalliCensusChemistralis. Et al., Blackwell publishing) can be used in the present invention.
- a spot can be regarded as a detection spot.
- the average value of the measured value of the blank spot can be regarded as the background, and can be subtracted from the measured value of the probe spot to obtain the gene expression level.
- the missing value of the gene expression level is excluded from the analysis target, preferably replaced with the minimum value of the gene expression level in each DNA chip, or more preferably 0.1 from the logarithmic value of the minimum value of the gene expression level. Can be replaced with the subtracted value. Furthermore, in order to remove low-signal genes, 20% or more, preferably 50%, more preferably 80% or more of the number of measurement samples is 2 to the 6th power, preferably 2 to the 8th power, more preferably 2 to 10 Only genes having gene expression levels greater than or equal to the power can be selected for analysis. Examples of normalization of gene expression levels include, but are not limited to, global normalization and quantile normalization (Bolstad, B. M. et al., 2003, Bioinformatics, Vol. 19, p185-193).
- the present invention also uses the detection polynucleotide, kit, device (for example, chip) of the present invention, or a combination thereof to measure the expression level of a target gene or gene in a specimen derived from a subject, and is derived from a patient with lung cancer.
- a discriminant discriminant function
- a discriminant discriminant function is created by using the gene expression level of the sample of the subject and the sample from the healthy subject as a teacher sample, and a method for determining or evaluating whether or not the sample contains a gene derived from lung cancer is provided .
- the present invention further uses the detection polynucleotide, kit, device (for example, chip) of the present invention, or a combination thereof, and that the specimen contains a gene derived from lung cancer or / or does not contain a gene derived from lung cancer.
- the first step of measuring the expression level of a target gene in a plurality of samples known to be determined or evaluated in vitro, the expression level of the target gene (target nucleic acid) obtained in the first step A second step of creating a discriminant using the measurement value as a teacher sample, a third step of measuring the expression level of the target gene in a subject-derived specimen in vitro, as in the first step, Substitute the measured value of the expression level of the target gene obtained in the third step into the discriminant obtained in step 2, and based on the result obtained from the discriminant.
- the method is capable of being detected by the detection polynucleotide contained in (1).
- a discriminant can be created using Fisher's discriminant analysis, nonlinear discriminant analysis based on Mahalanobis distance, neural network, Support Vector Machine (SVM), etc., but is not limited to these.
- Linear discriminant analysis is a method for discriminating group membership using Equation 1 as a discriminant when the boundary of grouping is a straight line or a hyperplane.
- x is an explanatory variable
- w is a coefficient of the explanatory variable
- w 0 is a constant term.
- the value obtained by the discriminant is called a discriminant score, and the measured value of a newly given data set is substituted into the discriminant as an explanatory variable, and the grouping can be discriminated by the code of the discriminant score.
- Fisher's discriminant analysis which is a type of linear discriminant analysis, is a dimension reduction method for selecting a suitable dimension for class discrimination. Focusing on the variance of synthetic variables, the variance of data with the same label is minimized. To construct a highly discriminating synthetic variable (Modern Applied Stastics with S. Fourth edition. Springer, 2002). In Fisher's discriminant analysis, a projection direction w that maximizes Equation 2 is obtained.
- ⁇ is the average of inputs
- ng is the number of data belonging to class g
- ⁇ g is the average of inputs of data belonging to class g.
- the numerator and denominator are the inter-class variance and intra-class variance when the data is projected in the direction of the vector w, respectively, and the discriminant coefficient wi is obtained by maximizing this ratio.
- Recognition “, Kyoritsu Shuppan (2009), Richard O. et al., Pattern Classification Second Edition, Wiley-Interscience, 2000).
- the Mahalanobis distance is calculated by Equation 3 in consideration of data correlation, and can be used as a nonlinear discriminant analysis for discriminating a group having a close Mahalanobis distance from each group as a belonging group.
- ⁇ is the center vector of each group
- S ⁇ 1 is the inverse matrix of the variance-covariance matrix of that group.
- the center vector is calculated from the explanatory variable x, and an average vector or a median vector can be used.
- a boundary surface called a hyperplane is used to correctly classify the data set into a known grouping, with specific data items in the data set with a known grouping as explanatory variables and the grouping to be classified as an objective variable. And determine a discriminant for classifying data using the boundary surface.
- the discriminant can determine the grouping by substituting the measured value of the newly given data set into the discriminant as an explanatory variable. Further, the discrimination result at this time may be a group to be classified, may be a probability of being classified into a group to be classified, or may be a distance from a hyperplane.
- a method for dealing with a non-linear problem a method is known in which a feature vector is non-linearly transformed into a higher dimension and linear identification is performed in the space.
- An expression in which the inner product of two elements in a non-linearly mapped space is expressed only by the input in the original space is called a kernel.
- a kernel a linear kernel, RBF (Radial Basis Function) Kernel and Gaussian kernel.
- the optimal discriminant that is, the discriminant, can be constructed only by calculating the kernel while avoiding the calculation of the features in the mapped space while actually mapping in high dimensions by the kernel (for example, Hideki Aso et al. Frontier 6 of Statistical Science, “Statistics of Pattern Recognition and Learning: New Concepts and Methods,” Iwanami Shoten (2004), Nero Christianiani et al., SVM Introduction, Kyoritsu Publishing (2008)).
- C-support vector classification (C-SVC), a kind of SVM method, creates a hyperplane by learning with two explanatory variables to determine which group an unknown data set falls into (C. Cortes et al., 1995, Machine Learning, 20, p 273-297).
- a C-SVC discriminant that can be used in the method of the present invention is shown below.
- all subjects are divided into two groups: lung cancer patients and healthy subjects.
- lung tissue examination can be used.
- a data set (hereinafter referred to as “learning sample group”) composed of comprehensive gene expression levels of the two groups of serum-derived specimens is prepared, and there is a clear difference in gene expression levels between the two groups.
- the discriminant by C-SVC is determined with the gene as the explanatory variable and the grouping as the target variable (eg, -1 and +1).
- Equation 4 is an objective function to be optimized, where e is all input vectors, y is an objective variable, a is a Lagrange undetermined multiplier vector, Q is a positive definite matrix, and C is a parameter for adjusting the constraint condition.
- Equation 5 is the discriminant finally obtained, and the group to which it belongs can be determined by the sign of the value obtained by the discriminant.
- x is a support vector
- y is a label indicating group membership
- a is a corresponding coefficient
- b is a constant term
- K is a kernel function.
- Equation 6 an RBF kernel defined by Equation 6 can be used.
- x represents a support vector
- ⁇ represents a kernel parameter that adjusts the complexity of the hyperplane.
- a method for determining or evaluating whether a specimen derived from a subject contains and / or does not contain expression of a target gene derived from lung cancer, or comparing the expression level with a control derived from a healthy subject As a method, a method such as a neural network, a k-neighbor method, a decision tree, or a logistic regression analysis can be selected.
- the method of the present invention comprises, for example, the following steps (a), (b) and (c):
- (A) Detection of expression level of a target gene in a specimen already known to be a tissue containing a lung cancer-derived gene derived from a lung cancer patient and / or a tissue not containing a lung cancer-derived gene derived from a healthy subject according to the present invention Measuring using a polynucleotide, a kit or a device (for example, a DNA chip)
- (C) The expression level of the target gene in the specimen derived from the subject is measured using the detection polynucleotide, kit or device (for example, DNA chip) according to the present invention, and measured according to the discriminant created in (b).
- x in the formulas 1 to 3, 5 and 6 is an explanatory variable, and a value obtained by measuring a polynucleotide selected from the polynucleotides described in Section 2 above or a fragment thereof, and the like.
- the explanatory variable for distinguishing between a lung cancer patient and a healthy body of the present invention is, for example, a gene expression level selected from the following (1) to (3).
- creating a discriminant requires a discriminant created from a learning sample group as a method for determining or evaluating whether a subject-derived sample contains and / or does not contain a gene derived from lung cancer.
- a discriminant created from a learning sample group as a method for determining or evaluating whether a subject-derived sample contains and / or does not contain a gene derived from lung cancer.
- the gene used as the explanatory variable of the discriminant is determined as follows. First, the comprehensive gene expression level of the lung cancer patient group, which is the learning sample group, and the exhaustive gene expression level of the healthy body group are used as a data set. Using the P value of U test or the P value of Wilcoxon test, the magnitude of the difference in the expression level of each gene between the two groups is determined.
- Bonferroni correction for example, by multiplying the P value obtained by the test by the number of test repetitions, that is, the number of genes used in the analysis, and comparing it with the desired significance level, the first type of error in the entire test is obtained. Probability of occurrence can be suppressed.
- the absolute value of the expression ratio (fold change) of the median of each gene expression level is calculated between the gene expression level of the lung cancer patient group and the gene expression level of the healthy body group instead of the test, and the explanation of the discriminant formula A gene used for a variable may be selected.
- the ROC curve may be created using the gene expression levels of the lung cancer patient group and the healthy body group, and the gene used for the explanatory variable of the discriminant may be selected based on the AUROC value.
- a discriminant that can be calculated by the above-described various methods is created using an arbitrary number of genes having a large difference in gene expression level obtained here.
- a method of constructing a discriminant that obtains the maximum discriminating accuracy for example, a method of constructing a discriminant with any combination of genes satisfying the significance level of the P value, or a gene used to create a discriminant, gene expression There is a method in which evaluation is repeated while increasing one by one in descending order of the amount of difference (Furey TS. Et al., 2000, Bioinformatics., Vol. 16, p906-14).
- the gene expression level of another independent lung cancer patient or healthy body is substituted into the explanatory variable, and the discrimination result of the group to which the independent lung cancer patient or healthy body belongs is calculated. That is, the diagnostic gene set and lung cancer that can detect more universal lung cancer by evaluating the discriminant constructed using the found diagnostic gene set and the diagnostic gene set in an independent sample group. You can find out how to do this.
- the Split-sample method for evaluating the discriminating performance (generalization) of the discriminant is preferable to use the Split-sample method for evaluating the discriminating performance (generalization) of the discriminant. That is, the data set is divided into a learning sample group and a test sample group, the gene selection and the discriminant formula are made by statistical test in the learning sample group, and the test sample group is discriminated by the discriminant formula and the test sample group The accuracy, sensitivity, and specificity are calculated using the true group to which the belongs, and the discrimination performance is evaluated. On the other hand, without dividing the data set, the gene selection and discriminant formula are created by statistical test using all the samples, and the newly prepared sample is discriminated by the discriminant to improve accuracy, sensitivity, and specificity. It is also possible to calculate and evaluate the discrimination performance.
- the present invention provides a polynucleotide for detection or disease diagnosis useful for diagnosis and treatment of lung cancer, a method for detecting lung cancer using the polynucleotide, and a lung cancer detection kit and device containing the polynucleotide.
- a diagnostic gene showing accuracy exceeding the lung cancer diagnostic method by the existing tumor marker CEA and to create a discriminant in the method of the present invention, for example, even though it was judged negative by CEA , Expressed genes in serum from patients whose lung cancer was finally found by close examination such as computed tomography using contrast medium, and expressed genes in serum from patients without lung cancer
- a diagnostic gene set and discriminant showing accuracy exceeding CEA can be constructed.
- one or more of the above based on the base sequence represented by any one of SEQ ID NOS: 1-125, 127-130, 132-134, and 561-578 as described above or a complementary sequence thereof One or more of the above polynucleotides based on the polynucleotide, and optionally the base sequence represented by any of SEQ ID NOs: 126, 131 and 579, or a complementary sequence thereof, and optionally Any combination from one or two or more of the above-described polynucleotides based on the base sequence represented by any one of them or a complementary sequence thereof is defined as a diagnostic gene set.
- a discriminant is constructed using the expression level of the diagnostic gene set in a specimen derived from a patient with a class I lung cancer and a specimen derived from a class II healthy subject.
- lung cancer patients and healthy subjects > 100 healthy subjects with informed consent and 17 lung cancer patients with no primary cancer other than lung cancer (lung adenocarcinoma was 8 cases, 6 cases were T2N0M0, 1 case was T2N1M0, 1 case was T2N2M0 There are 8 cases of squamous cell carcinoma, including 5 cases of T2N0M0, 1 case of T4N0M0, 1 case of T2N1M0, 1 case of T4N2M0) and Venoject II VP-AS109K60 (Terumo Corporation) Were collected and used as a learning sample group.
- lung adenocarcinoma was 5 cases, 3 cases were T2N0M0, 1 case was T3N0M0, 1 case
- the histological types and stages of these lung cancer specimens are summarized in Tables 2-1 and 2-2.
- RNA extraction from liquid sample kit was obtained from 300 ⁇ L of serum obtained from a total of 175 of 150 healthy subjects and 25 lung cancer patients, including the above-mentioned learning sample group and test sample group.
- Total RNA was obtained according to the protocol specified by the company using the RNA extraction reagent in the same company.
- RNA Labeling kit (Toray Industries, Inc.) for total RNA obtained from a total of 175 sera of 150 healthy subjects and 25 lung cancer patients including the above-mentioned learning sample group and test sample group as samples. ) was used to fluorescently label miRNA based on the protocol (ver 2.20) defined by the company.
- 3D-Gene Human miRNA Oligo chip (Toray Industries, Inc.) equipped with a probe having a sequence complementary to 2,555 miRNAs among miRNAs registered in miRBBase release 20 as an oligo DNA chip ), Hybridization of miRNA in total RNA with the probe on the DNA chip and washing after hybridization were performed under stringent conditions based on the protocol established by the company.
- the DNA chip was scanned using a 3D-Gene (registered trademark) scanner (Toray Industries, Inc.), an image was acquired, and the fluorescence intensity was digitized with 3D-Gene (registered trademark) Extraction (Toray Industries, Inc.).
- the digitized fluorescence intensity is converted into a logarithmic value with a base of 2 to obtain the gene expression level, and the blank value is subtracted.
- the missing value is 0.1 from the logarithmic value of the minimum value of the gene expression level in each DNA chip. Replaced with the value obtained by subtracting.
- Calculation and statistical analysis using the expressed gene expression level of miRNA are as follows: R Language 3.0.2 (R Development Core Team (2013). R: A language and environment for static computing. R Foundation for Stating URL http://www.R-project.org/) and MASS package 7.3-30 (Venables, WN & Ripley, BD (2002) Modern Applied Statistics with S. Fourth Edition, Nsp. York.ISBN 0-387-95457-0).
- test sample group was composed of 8 lung cancer patients with no cancer and 51 healthy subjects. Subsequent operations were performed in the same manner as in Reference Example 1.
- Example 1 ⁇ Selection of genetic markers using samples from the learning sample group and evaluation method for lung cancer discrimination performance of single genetic markers using samples from the test sample group>
- a genetic marker for discriminating lung cancer from healthy specimens is selected from the learning specimen group, and the individual lung cancer discrimination performance is selected for the genetic markers selected in the specimen of the test specimen group independent of the learning specimen group. The method of evaluation was examined.
- the miRNA expression levels of the learning sample group and the test sample group obtained in the above reference example were combined and normalized by quantile normalization.
- a diagnostic gene was selected using a group of learning samples.
- the gene expression level of 2 6 6 or more in 50% or more of specimens in either the lung cancer patient group in the learning specimen group or the healthy body group in the learning specimen group Only genes with a were selected.
- the P value obtained by the two-sided t-test assuming equal variance for each gene expression level is Bonferroni corrected, and p ⁇ Genes satisfying 0.01 were acquired as genetic markers used as explanatory variables in the discriminant equation, and are listed in Table 3.
- genes newly found as markers for examining the presence or absence of lung cancer are polynucleotides comprising the nucleotide sequences represented by SEQ ID NOs: 1-125, 127-130, and 132-134.
- a discriminant for discriminating the presence or absence of lung cancer was created by Fisher's discriminant analysis.
- a discriminant is created by inputting a polynucleotide consisting of a base sequence represented by any of SEQ ID NOS: 1-134 newly found in a learning sample group into Equation 2, and the calculated accuracy, sensitivity, and specificity are calculated. The degrees are shown in Table 4. Table 5 shows the discriminant coefficients and constant terms.
- the accuracy, sensitivity, and specificity in the test sample group were calculated using the discriminant created above, and the discriminating performance of the selected polynucleotide was verified with an independent sample (Table 4).
- Table 4 For example, when the measured expression level of the nucleotide sequence represented by SEQ ID NO: 1 is compared between healthy subjects (100 people) and lung cancer patients (17 people) in the learning sample group, the gene expression levels in the lung cancer patient group relative to the healthy body group It was shown that the measured value was significantly lower (see FIG. 2 left), and this result was also reproducible in the healthy subjects (50) and lung cancer patients (8) of the test sample group (see right of FIG. 2).
- the measured value of the gene expression level of the lung cancer patient group is significantly lower ( ⁇ ) or higher (+) than the healthy body group (Table 3). These results were obtained and verified in the test sample group. Further, for example, regarding the base sequence represented by SEQ ID NO: 1, when the target of lung cancer detection was calculated using a threshold value (10.08) for discriminating both groups set in the learning sample group, 7 true positive cases, There were 50 true negatives, 0 false positives, and 1 false negative. From these values, a detection performance of 98.3%, sensitivity 87.5%, and specificity 100% was obtained. Thus, the detection performance of all the polynucleotides shown in SEQ ID NOs: 1-134 was calculated and listed in Table 4.
- SEQ ID NOs: 1, 2, 3, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 26, 27, 28, 29, 33 polynucleotides consisting of the base sequences represented by 33, 34, 38, 41, 42, 44, 65, 124, 125 and 133 have a sensitivity of 87.5%, 100% and 100% in the test sample group, respectively.
- polynucleotides having the base sequences represented by SEQ ID NOs: 2, 3, 11, 13, 20, 21, 22, 30, 31, 37 All four specimens with tumors and squamous cell carcinomas with tumor diameters of less than 7 cm and no lymph node metastasis could be correctly identified as lung cancer. Therefore, these polynucleotides can detect relatively early lung cancer and contribute to early diagnosis of lung cancer.
- Example 2 ⁇ Evaluation method of lung cancer discrimination performance by combination of multiple genetic markers using test sample group samples>
- a method for evaluating lung cancer discrimination performance by combining the genetic markers selected in Example 1 was examined. Specifically, among the polynucleotides consisting of the base sequences represented by SEQ ID NOs: 1-134 selected in Example 1, SEQ ID NOs: 1-125, 127-130, and 132- Fisher's discriminant analysis is performed on 8,910 combinations of two polynucleotides containing at least one expression level measurement value of any one of the polynucleotides consisting of the base sequence represented by 134 to determine the presence or absence of lung cancer. A discriminant to discriminate was constructed. Next, using the discriminant created above, the accuracy, sensitivity, and specificity in the test sample group were calculated, and the discriminating performance of the selected polynucleotide was verified with an independent sample.
- the healthy body groups and lung cancer patient groups are compared.
- a scatter plot in which the measured value of the gene expression level was significantly separated was obtained (see the left side of FIG. 3), and this result was also reproduced in healthy subjects (50) and lung cancer patients (8) in the test sample group (see FIG. 3). 3 right).
- the novel sequences are composed of the base sequences represented by SEQ ID NOs: 1-125, 127-130, and 132-134.
- SEQ ID NO: 1 and SEQ ID NO: 6 SEQ ID NO: 1 and SEQ ID NO: 11, SEQ ID NO: 1 and SEQ ID NO: 19, SEQ ID NO: 1 and SEQ ID NO: 34, SEQ ID NO: 1 and SEQ ID NO: 38, SEQ ID NO: 1 and SEQ ID NO: 52, Sequence Test samples for all nine combinations of the measured expression levels of polynucleotides consisting of the nucleotide sequences represented by SEQ ID NO: 1 and SEQ ID NO: 53, SEQ ID NO: 1 and SEQ ID NO: 56, and SEQ ID NO: 1 and SEQ ID NO: 113 The group showed a sensitivity of 100%.
- the measured expression level of the polynucleotide comprising the nucleotide sequence represented by SEQ ID NOs: 1-134 is 3, 4, 5, 6, 7, 8, 9, 10, or more.
- the expression level value measured between the healthy body group and the lung cancer group in the test sample group is obtained, and the group Rank all polynucleotides in descending order of P-value by Student's t-test indicating statistical significance of differences between them (lowest P-value is first), one from the top polynucleotide
- the lung cancer detection sensitivity of one to a plurality of polynucleotide combinations was evaluated.
- the order of the combination of the polynucleotides in this evaluation is the order that goes back from the SEQ ID NO: 134 shown in Table 3 to 133, 132 in the order of SEQ ID NO.
- the sensitivity in the test sample group was 62.5% for one polynucleotide (SEQ ID NO: 134), 75% for 3 polynucleotides (SEQ ID NO: 132 to 134), and 5 polynucleotides (SEQ ID NO: 134).
- polynucleotides SEQ ID NO: 129-134) 100%, 10 polynucleotides (SEQ ID NO: 125-134) 100%, 20 polynucleotides (SEQ ID NO: 115-134) 100%, 30 polynucleotides (SEQ ID NOs 105-134) 100%, 50 polynucleotides (SEQ ID NOs 85-134) 100%, 80 polynucleotides (SEQ ID NOs 55-134) 134) 100%, 120 polynucleotides (SEQ ID NOs: 15-134), 100%, 134 polynucleotides Was 100% with SEQ ID NO: 1 to 134).
- a higher lung cancer discrimination performance can be obtained when a plurality of polynucleotides are combined than a single polynucleotide or a smaller number of polynucleotides.
- the combination of a plurality of polynucleotides is not limited to the case of combining in the order of statistical significance as described above, and any combination of a plurality of polynucleotides can be used for detection of lung cancer.
- Example 3 Selection of genetic markers using all specimens and evaluation method of lung cancer discrimination performance of the captured genetic markers>
- the samples of the learning sample group and the test sample group used in Example 1 and Example 2 were integrated and all the samples were used to select gene markers and evaluate their lung cancer discrimination performance.
- the miRNA expression levels for the sera of 25 lung cancer patients and the sera of 150 healthy subjects obtained in the above Reference Example were normalized by quantile normalization.
- the miRNA expression levels for the sera of 25 lung cancer patients and the sera of 150 healthy subjects obtained in the above Reference Example were normalized by quantile normalization.
- only genes with gene expression level of 2 6 or more in 50% or more of specimens in either lung cancer patient group or healthy body group are selected for selection of genetic marker did.
- Bonferroni correction was performed on the P value obtained by the two-tailed t-test assuming equal variance for each gene expression level, and p ⁇ A gene satisfying 0.01 was selected as a genetic marker to be used as an explanatory variable of the discriminant, and listed in Table 7.
- the polynucleotides shown in SEQ ID NOs: 135-174 have significantly lower ( ⁇ ) or higher (+) results in the measured values of the lung cancer patient group than the healthy body group ( Table 7) was obtained, and these results could be verified in the test sample group. Therefore, the gene expression level measurement values described in Table 7 were obtained by the methods described in Example 1 and Example 2 by using them alone or in combination with the gene expression level measurement values described in Table 3. The specimen can be discriminated.
- Example 4 ⁇ Evaluation method of lung cancer-specific discrimination performance by a combination of multiple genetic markers using test sample group samples>
- the genetic marker selected in Example 1 the learning sample group of the sample group described in Reference Example 2 was used as a target, and a method similar to the method described in Example 1 was used.
- a method of evaluating lung cancer-specific discrimination performance by further combining the polynucleotides consisting of the nucleotide sequences represented by SEQ ID NOs: 561 to 579 was examined.
- the miRNA expression levels of the learning sample group and the test sample group obtained in Reference Example 2 above were combined and normalized by quantile normalization.
- Fisher's discriminant analysis is performed on 1 to 4 combinations including at least one expression level measurement value of any one of the polynucleotides consisting of the nucleotide sequences represented by SEQ ID NOs: 1 to 174 and 561 to 579, A discriminant was constructed to determine the presence or absence of lung cancer.
- lung cancer patient group is positive sample group, while healthy body group, pancreatic cancer patient group, biliary tract cancer patient group, colon cancer patient group, stomach cancer patient group, liver cancer patient group and pancreaticobiliary benign disease Using the discriminant created as described above with the patient group as the negative sample group, the accuracy, sensitivity, and specificity of the test sample group were calculated, and the discriminating performance of the selected polynucleotide was verified with an independent sample.
- nucleotide sequences represented by the above SEQ ID NOs SEQ ID NOs: 1 to 174 and 561 to 579 corresponding to the miRNA markers in Table 1
- lung cancer could be specifically distinguished from other cancers.
- polynucleotide that can specifically bind to the target marker include, for example, SEQ ID NOs: 1, 2, 3, 4, 5, 7, 9, 10, 11, 19, 21, 26, 29, 31, 52, 53, 63.
- SEQ ID NOs: 1, 2, 3, 10, 63 included in the cancer type-specific polynucleotide group 1 13, 124, 125, 126, 128, 130, 143, 160, 561, 568, 573, and a group consisting of polynucleotides consisting of a complementary sequence thereof (cancer type-specific polynucleotide group)
- cancer type-specific polynucleotide group a group consisting of polynucleotides consisting of a complementary sequence thereof.
- lung cancer could be specifically distinguished from other cancers with high accuracy.
- the number of combinations of the above-mentioned cancer type-specific polynucleotides is 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, or more.
- the number of discriminators can be combined, but a discrimination accuracy of 90% or more was able to be shown in combinations of 4 or more.
- Table 8-1 shows the discrimination accuracy when measured using a polynucleotide consisting of the base sequence represented by SEQ ID NO: 1 or its complementary sequence.
- the accuracy is 94.2% in the learning sample group, and in the test sample group The accuracy was 91.4%.
- the test sample has an accuracy of 98.7%. The group showed an accuracy of 97.5%.
- the test sample when measurement is performed using three combinations including at least one polynucleotide comprising the nucleotide sequence represented by SEQ ID NO: 1 or a complementary sequence thereof, the test sample has an accuracy of 99.2%. The group showed an accuracy of 98.5%. For example, when measurement is performed using four combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 1 or a complementary sequence thereof, the test sample has an accuracy of 99.7%. The group showed an accuracy of 99.0%.
- Table 8-2 shows the discrimination accuracy when measured using a polynucleotide consisting of the base sequence represented by SEQ ID NO: 2 or its complementary sequence.
- the accuracy is 94.0% in the learning sample group, and in the test sample group The accuracy was 92.4%.
- the test sample has an accuracy of 97.2% in the learning sample group The group showed an accuracy of 96.0%.
- the test sample when measurement is performed using three combinations including at least one polynucleotide comprising the nucleotide sequence represented by SEQ ID NO: 2 or a complementary sequence thereof, the test sample has an accuracy of 99.5% The group showed an accuracy of 98.0%. Further, for example, when measurement is performed using four combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 2 or a complementary sequence thereof, the learning sample group has an accuracy of 100% and the test sample group has An accuracy of 98.0% was indicated.
- Table 8-3 shows the discrimination accuracy when measured using a polynucleotide consisting of the base sequence represented by SEQ ID NO: 3 or its complementary sequence.
- the learning sample group has an accuracy of 85.7% and the test sample group has An accuracy of 84.3% was indicated.
- the test sample has an accuracy of 97.0%. The group showed an accuracy of 97.0%.
- the test sample when measurement is performed using three combinations including at least one polynucleotide comprising the nucleotide sequence represented by SEQ ID NO: 3 or a complementary sequence thereof, the test sample has an accuracy of 99.0%. The group showed an accuracy of 98.5%. For example, when measurement is performed using four combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 3 or a complementary sequence thereof, the test sample has an accuracy of 99.5%. The group showed an accuracy of 100%.
- Table 8-4 shows the discrimination accuracy when measured using a polynucleotide consisting of the base sequence represented by SEQ ID NO: 10 or its complementary sequence.
- the learning sample group has an accuracy of 64.0% and the test sample group has The accuracy was 61.6%.
- the test sample has an accuracy of 94.0%. The group showed an accuracy of 92.4%.
- the test sample when measurement is performed using three combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 10 or its complementary sequence, the test sample has an accuracy of 99.2%. The group showed an accuracy of 99.0%.
- the test sample when measurement is performed using four combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 10 or a complementary sequence thereof, the test sample has an accuracy of 99.2% in the learning sample group The group showed an accuracy of 99.5%.
- Table 8-5 shows the discrimination accuracy when measured using a polynucleotide consisting of the base sequence represented by SEQ ID NO: 63 or its complementary sequence.
- the accuracy is 79.4% in the learning sample group and the test sample group The accuracy was 80.8%.
- the test sample has an accuracy of 95.7%. The group showed an accuracy of 97.5%.
- the test sample when measurement is performed using three combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 63 or a complementary sequence thereof, the test sample has an accuracy of 98.2%. The group showed an accuracy of 98.0%. For example, when measurement is performed using four combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 63 or a complementary sequence thereof, the test sample has an accuracy of 99.5%. The group showed an accuracy of 97.5%.
- Table 8-6 shows the discrimination accuracy when measured using a polynucleotide consisting of the base sequence represented by SEQ ID NO: 113 or its complementary sequence.
- the learning sample group has an accuracy of 67.8% and the test sample group has An accuracy of 69.2% was indicated.
- the test sample has an accuracy of 97.7%. The group showed an accuracy of 95.5%.
- the test sample when measurement is performed using three combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 113 or its complementary sequence, the test sample has an accuracy of 99.5%. The group showed an accuracy of 99.0%. For example, when measurement is performed using four combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 113 or a complementary sequence thereof, the test sample has an accuracy of 99.5%. The group showed an accuracy of 99.0%.
- the discrimination accuracy when measured using a polynucleotide consisting of the base sequence represented by SEQ ID NO: 124 or its complementary sequence is shown in Table 8-7.
- the learning sample group has an accuracy of 79.6%
- the test sample group has An accuracy of 76.8% was indicated.
- the test sample has an accuracy of 95.0%. The group showed an accuracy of 91.4%.
- the test sample when measurement is performed using three combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 124 or a complementary sequence thereof, the test sample has an accuracy of 98.5%. The group showed an accuracy of 97.5%. For example, when measurement is performed using four combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 124 or a complementary sequence thereof, the test sample has an accuracy of 99.0%. The group showed an accuracy of 99.0%.
- Table 8-8 shows the discrimination accuracy when measured using a polynucleotide consisting of the base sequence represented by SEQ ID NO: 125 or its complementary sequence.
- the learning sample group has an accuracy of 77.6%
- the test sample group has The accuracy was 73.7%.
- the test sample has an accuracy of 94.7%. The group showed an accuracy of 93.4%.
- the test sample when measurement is performed using three combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 125 or a complementary sequence thereof, the test sample has an accuracy of 99.0%. The group showed an accuracy of 96.5%. For example, when measurement is performed using four combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 125 or a complementary sequence thereof, the test sample has an accuracy of 99.5% in the learning sample group The group showed an accuracy of 99.0%.
- Table 8-9 shows the discrimination accuracy when measured using a polynucleotide consisting of the base sequence represented by SEQ ID NO: 126 or its complementary sequence.
- the accuracy is 90.4% in the learning sample group, and in the test sample group The accuracy was 92.4%.
- the test sample has an accuracy of 96.7%. The group showed an accuracy of 95.5%.
- the test sample when measurement is performed using three combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 126 or its complementary sequence, the test sample has an accuracy of 99.7%. The group showed an accuracy of 98.0%. For example, when measurement is performed using four combinations including at least one polynucleotide comprising the base sequence represented by SEQ ID NO: 126 or a complementary sequence thereof, the test sample has an accuracy of 99.7%. The group showed an accuracy of 99.0%.
- Table 8-10 shows the discrimination accuracy when measured using a polynucleotide comprising the base sequence represented by SEQ ID NO: 128 or its complementary sequence.
- the accuracy is 81.4% in the learning sample group, and in the test sample group The accuracy was 81.3%.
- the test sample has an accuracy of 96.2%. The group showed an accuracy of 94.9%.
- the test sample when measurement is performed using three combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 128 or a complementary sequence thereof, the test sample has an accuracy of 98.7%. The group showed an accuracy of 97.5%. For example, when measurement is performed using four combinations including at least one polynucleotide comprising the nucleotide sequence represented by SEQ ID NO: 128 or a complementary sequence thereof, the test sample has an accuracy of 99.2% in the learning sample group The group showed an accuracy of 99.5%.
- Table 8-11 shows the discrimination accuracy when measured using a polynucleotide consisting of the base sequence represented by SEQ ID NO: 130 or its complementary sequence.
- the learning sample group has an accuracy of 83.4%
- the test sample group has An accuracy of 87.4% was indicated.
- the test sample has an accuracy of 96.2% in the learning sample group The group showed an accuracy of 94.4%.
- the test sample when measurement is performed using three combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 130 or a complementary sequence thereof, the test sample has an accuracy of 99.2%. The group showed an accuracy of 98.5%.
- the test sample when measurement is performed using four combinations including at least one polynucleotide comprising the nucleotide sequence represented by SEQ ID NO: 130 or a complementary sequence thereof, the test sample has an accuracy of 99.5%. The group showed an accuracy of 99.5%.
- the discrimination accuracy when measured using a polynucleotide consisting of the base sequence represented by SEQ ID NO: 143 or its complementary sequence is shown in Table 8-12.
- the learning sample group has an accuracy of 64.6% and the test sample group has An accuracy of 66.2% was indicated.
- the test sample has an accuracy of 96.0%. The group showed an accuracy of 93.9%.
- the test sample when measurement is performed using three combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 143 or a complementary sequence thereof, the test sample has an accuracy of 98.7%. The group showed an accuracy of 98.0%. For example, when measurement is performed using four combinations including at least one polynucleotide comprising the nucleotide sequence represented by SEQ ID NO: 143 or a complementary sequence thereof, the test sample has an accuracy of 99.0%. The group showed an accuracy of 98.0%.
- Table 8-13 shows the discrimination accuracy when measured using a polynucleotide consisting of the base sequence represented by SEQ ID NO: 160 or its complementary sequence.
- the accuracy is 70.9% in the learning sample group, and in the test sample group The accuracy was 67.2%.
- the test sample has an accuracy of 96.0%. The group showed an accuracy of 92.4%.
- the test sample when measurement is performed using three combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 160 or a complementary sequence thereof, the test sample has an accuracy of 99.2%. The group showed an accuracy of 98.5%. For example, when measurement is performed using four combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 160 or a complementary sequence thereof, the test sample has an accuracy of 99.5%. The group showed an accuracy of 99.0%.
- Table 8-14 shows the discrimination accuracy when measured using a polynucleotide consisting of the base sequence represented by SEQ ID NO: 561 or its complementary sequence.
- the learning sample group has an accuracy of 84.9% and the test sample group has The accuracy was 81.8%.
- the test sample has an accuracy of 96.5%. The group showed an accuracy of 97.5%.
- the test sample when measurement is performed using three combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 561 or a complementary sequence thereof, the test sample has an accuracy of 98.7%. The group showed an accuracy of 98.0%.
- the learning sample group when measurement is performed using four combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 561 or a complementary sequence thereof, the learning sample group has an accuracy of 100%, and the test sample group has An accuracy of 99.0% was indicated.
- Table 8-15 shows the discrimination accuracy when measured using a polynucleotide consisting of the base sequence represented by SEQ ID NO: 568 or its complementary sequence.
- the learning sample group has an accuracy of 60.2% and the test sample group has The accuracy was 67.2%.
- the test sample has an accuracy of 97.0%. The group showed an accuracy of 96.0%.
- the test sample when measurement is performed using three combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 568 or a complementary sequence thereof, the test sample has an accuracy of 99.0%. The group showed an accuracy of 96.0%. For example, when measurement is performed using four combinations including at least one polynucleotide consisting of the nucleotide sequence represented by SEQ ID NO: 568 or its complementary sequence, the test sample has an accuracy of 99.5% in the learning sample group The group showed an accuracy of 98.5%.
- Table 8-16 shows the discrimination accuracy when measured using a polynucleotide consisting of the base sequence represented by SEQ ID NO: 573 or its complementary sequence.
- the accuracy is 53.0% in the learning sample group, and the test sample group The accuracy was 53.5%.
- the test sample has an accuracy of 96.5%. The group showed an accuracy of 95.5%.
- the test sample when measurement is performed using three combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 573 or a complementary sequence thereof, the test sample has an accuracy of 98.7%. The group showed an accuracy of 98.0%. Further, for example, when measurement is performed using four combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 573 or a complementary sequence thereof, the test sample has an accuracy of 99.2%. The group showed an accuracy of 98.5%.
- Table 8-17 shows the discrimination accuracy when measured using a polynucleotide comprising the base sequence represented by SEQ ID NO: 578 or its complementary sequence.
- the learning sample group when measured using one combination including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 578 or a complementary sequence thereof, the learning sample group has an accuracy of 52.8% and the test sample group has The accuracy was 53.5%.
- the test sample has an accuracy of 96.2%. The group showed an accuracy of 94.9%.
- the test sample when measurement is performed using three combinations including at least one polynucleotide consisting of the base sequence represented by SEQ ID NO: 578 or a complementary sequence thereof, the test sample has an accuracy of 98.5%. The group showed an accuracy of 96.5%. Further, for example, when measurement is performed using four combinations including at least one polynucleotide comprising the nucleotide sequence represented by SEQ ID NO: 578 or its complementary sequence, the test sample has an accuracy of 99.2%. The group showed an accuracy of 99.0%.
- the learning sample group is the lung cancer patient group and others A scatter diagram was obtained in which the discrimination score of each group was significantly separated (see FIG. 4A), and this result could also be reproduced in the test sample group (see FIG. 4B).
- lung cancer can be effectively detected by a simple and inexpensive method, so that early detection, diagnosis and treatment of lung cancer becomes possible. Further, according to the method of the present invention, lung cancer can be detected in a minimally invasive manner using patient blood, so that lung cancer can be detected easily and quickly.
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Abstract
Description
すなわち、本発明は、以下の特徴を有する。
(1)肺がんマーカーである、miR-6768-5p、miR-6836-3p、miR-6782-5p、miR-3663-3p、miR-1908-3p、miR-6726-5p、miR-4258、miR-1343-3p、miR-4516、miR-6875-5p、miR-4651、miR-6825-5p、miR-6840-3p、miR-6780b-5p、miR-6749-5p、miR-8063、miR-6784-5p、miR-3679-5p、miR-3184-5p、miR-663b、miR-6880-5p、miR-1908-5p、miR-92a-2-5p、miR-7975、miR-7110-5p、miR-6842-5p、miR-6857-5p、miR-5572、miR-3197、miR-6131、miR-6889-5p、miR-4454、miR-1199-5p、miR-1247-3p、miR-6800-5p、miR-6872-3p、miR-4649-5p、miR-6791-5p、miR-4433b-3p、miR-3135b、miR-128-2-5p、miR-4675、miR-4472、miR-6785-5p、miR-6741-5p、miR-7977、miR-3665、miR-128-1-5p、miR-4286、miR-6765-3p、miR-4632-5p、miR-365a-5p、miR-6088、miR-6816-5p、miR-6885-5p、miR-711、miR-6765-5p、miR-3180、miR-4442、miR-4792、miR-6721-5p、miR-6798-5p、miR-3162-5p、miR-6126、miR-4758-5p、miR-2392、miR-486-3p、miR-6727-5p、miR-4728-5p、miR-6746-5p、miR-4270、miR-3940-5p、miR-4725-3p、miR-7108-5p、miR-3656、miR-6879-5p、miR-6738-5p、miR-1260a、miR-4446-3p、miR-3131、miR-4463、miR-3185、miR-6870-5p、miR-6779-5p、miR-1273g-3p、miR-8059、miR-4697-5p、miR-4674、miR-4433-3p、miR-4257、miR-1915-5p、miR-4417、miR-1343-5p、miR-6781-5p、miR-4695-5p、miR-1237-5p、miR-6775-5p、miR-7845-5p、miR-4746-3p、miR-7641、miR-7847-3p、miR-6806-5p、miR-4467、miR-4726-5p、miR-4648、miR-6089、miR-1260b、miR-4532、miR-5195-3p、miR-3188、miR-6848-5p、miR-1233-5p、miR-6717-5p、miR-3195、miR-6757-5p、miR-8072、miR-4745-5p、miR-6511a-5p、miR-6776-5p、miR-371a-5p、miR-1227-5p、miR-7150、miR-1915-3p、miR-187-5p、miR-614、miR-1225-5p、miR-451a、miR-939-5p、miR-223-3p、miR-125a-3p、miR-92b-5p、miR-22-3p、miR-6073、miR-6845-5p、miR-6769b-5p、miR-4665-3p、miR-1913、miR-1228-3p、miR-940、miR-296-3p、miR-4690-5p、miR-548q、miR-663a、miR-1249、miR-1202、miR-7113-3p、miR-1225-3p、miR-4783-3p、miR-4448及びmiR-4534からなる群から選択される少なくとも1つ以上のポリヌクレオチドと特異的に結合可能な核酸を含む、肺がんの検出用キット。
(a)配列番号1~125、127~130、132~134、及び、561~578のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(b)配列番号1~125、127~130、132~134、及び、561~578のいずれかで表される塩基配列を含むポリヌクレオチド、
(c)配列番号1~125、127~130、132~134、及び、561~578のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(d)配列番号1~125、127~130、132~134、及び、561~578のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列を含むポリヌクレオチド、及び
(e)前記(a)~(d)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択されるポリヌクレオチドである、(1)又は(2)に記載のキット。
(f)配列番号126、131及び579のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(g)配列番号126、131及び579のいずれかで表される塩基配列を含むポリヌクレオチド、
(h)配列番号126、131及び579のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(i)配列番号126、131及び579のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列を含むポリヌクレオチド、及び
(j)前記(f)~(i)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、からなる群から選択されるポリヌクレオチドである、(4)又は(5)に記載のキット。
(k)配列番号135~174のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(l)配列番号135~174のいずれかで表される塩基配列を含むポリヌクレオチド、
(m)配列番号135~174のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(n)配列番号135~174のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列を含むポリヌクレオチド、及び
(o)前記(k)~(n)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択されるポリヌクレオチドである、(7)又は(8)に記載のキット。
(a)配列番号1~125、127~130、132~134、及び、561~578のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(b)配列番号1~125、127~130、132~134、及び、561~578のいずれかで表される塩基配列を含むポリヌクレオチド、
(c)配列番号1~125、127~130、132~134、及び、561~578のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(d)配列番号1~125、127~130、132~134、及び、561~578のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列を含むポリヌクレオチド、及び
(e)前記(a)~(d)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択されるポリヌクレオチドである、(11)又は(12)に記載のデバイス。
(f)配列番号126、131及び579のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(g)配列番号126、131及び579のいずれかで表される塩基配列を含むポリヌクレオチド、
(h)配列番号126、131及び579のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(i)配列番号126、131及び579のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列を含むポリヌクレオチド、及び
(j)前記(f)~(i)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択されるポリヌクレオチドである、(14)又は(15)に記載のデバイス。
(k)配列番号135~174のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(l)配列番号135~174のいずれかで表される塩基配列を含むポリヌクレオチド、
(m)配列番号135~174のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(n)配列番号135~174のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列を含むポリヌクレオチド、及び
(o)前記(k)~(n)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択されるポリヌクレオチドである、(17)又は(18)に記載のデバイス。
本明細書中で使用する用語は、以下の定義を有する。
さらに、配列番号1~174及び561~579のいずれかで表される塩基配列を含むポリヌクレオチドの例としては、それぞれ前駆体である配列番号175~354及び579~596のいずれかで表されるポリヌクレオチドが挙げられる。
1.肺がんの標的核酸
本発明の上記定義の肺がん検出用の核酸プローブ又はプライマーを使用して、肺がん又は肺がん細胞の存在及び/又は不存在を検出するための、肺がんマーカーとしての主要な標的核酸には、hsa-miR-6768-5p、hsa-miR-6836-3p、hsa-miR-6782-5p、hsa-miR-3663-3p、hsa-miR-1908-3p、hsa-miR-6726-5p、hsa-miR-4258、hsa-miR-1343-3p、hsa-miR-4516、hsa-miR-6875-5p、hsa-miR-4651、hsa-miR-6825-5p、hsa-miR-6840-3p、hsa-miR-6780b-5p、hsa-miR-6749-5p、hsa-miR-8063、hsa-miR-6784-5p、hsa-miR-3679-5p、hsa-miR-3184-5p、hsa-miR-663b、hsa-miR-6880-5p、hsa-miR-1908-5p、hsa-miR-92a-2-5p、hsa-miR-7975、hsa-miR-7110-5p、hsa-miR-6842-5p、hsa-miR-6857-5p、hsa-miR-5572、hsa-miR-3197、hsa-miR-6131、hsa-miR-6889-5p、hsa-miR-4454、hsa-miR-1199-5p、hsa-miR-1247-3p、hsa-miR-6800-5p、hsa-miR-6872-3p、hsa-miR-4649-5p、hsa-miR-6791-5p、hsa-miR-4433b-3p、hsa-miR-3135b、hsa-miR-128-2-5p、hsa-miR-4675、hsa-miR-4472、hsa-miR-6785-5p、hsa-miR-6741-5p、hsa-miR-7977、hsa-miR-3665、hsa-miR-128-1-5p、hsa-miR-4286、hsa-miR-6765-3p、hsa-miR-4632-5p、hsa-miR-365a-5p、hsa-miR-6088、hsa-miR-6816-5p、hsa-miR-6885-5p、hsa-miR-711、hsa-miR-6765-5p、hsa-miR-3180、hsa-miR-4442、hsa-miR-4792、hsa-miR-6721-5p、hsa-miR-6798-5p、hsa-miR-3162-5p、hsa-miR-6126、hsa-miR-4758-5p、hsa-miR-2392、hsa-miR-486-3p、hsa-miR-6727-5p、hsa-miR-4728-5p、hsa-miR-6746-5p、hsa-miR-4270、hsa-miR-3940-5p、hsa-miR-4725-3p、hsa-miR-7108-5p、hsa-miR-3656、hsa-miR-6879-5p、hsa-miR-6738-5p、hsa-miR-1260a、hsa-miR-4446-3p、hsa-miR-3131、hsa-miR-4463、hsa-miR-3185、hsa-miR-6870-5p、hsa-miR-6779-5p、hsa-miR-1273g-3p、hsa-miR-8059、hsa-miR-4697-5p、hsa-miR-4674、hsa-miR-4433-3p、hsa-miR-4257、hsa-miR-1915-5p、hsa-miR-4417、hsa-miR-1343-5p、hsa-miR-6781-5p、hsa-miR-4695-5p、hsa-miR-1237-5p、hsa-miR-6775-5p、hsa-miR-7845-5p、hsa-miR-4746-3p、hsa-miR-7641、hsa-miR-7847-3p、hsa-miR-6806-5p、hsa-miR-4467、hsa-miR-4726-5p、hsa-miR-4648、hsa-miR-6089、hsa-miR-1260b、hsa-miR-4532、hsa-miR-5195-3p、hsa-miR-3188、hsa-miR-6848-5p、hsa-miR-1233-5p、hsa-miR-6717-5p、hsa-miR-3195、hsa-miR-6757-5p、hsa-miR-8072、hsa-miR-4745-5p、hsa-miR-6511a-5p、hsa-miR-6776-5p、hsa-miR-371a-5p、hsa-miR-1227-5p、hsa-miR-7150、hsa-miR-1915-3p、hsa-miR-187-5p、hsa-miR-614、hsa-miR-1225-5p、hsa-miR-451a、hsa-miR-939-5p、hsa-miR-223-3p、hsa-miR-125a-3p、hsa-miR-92b-5p、hsa-miR-22-3p、hsa-miR-6073、hsa-miR-6845-5p、hsa-miR-6769b-5p、hsa-miR-4665-3p、hsa-miR-1913、hsa-miR-1228-3p、hsa-miR-940、hsa-miR-296-3p、hsa-miR-4690-5p、hsa-miR-548q、hsa-miR-663a、hsa-miR-1249、hsa-miR-1202、hsa-miR-7113-3p、hsa-miR-1225-3p、hsa-miR-4783-3p、hsa-miR-4448及びhsa-miR-4534からなる群から選択される少なくとも1つ以上のmiRNAを用いることができる。さらにこれらのmiRNAと組み合わせることができる他の肺がんマーカー、すなわち、hsa-miR-19b-3p、hsa-miR-1228-5p及びhsa-miR-1307-3pからなる群から選択される少なくとも1つ以上のmiRNAも標的核酸として好ましく用いることができる。さらにこれらのmiRNAと組み合わせることができる他の肺がんマーカー、すなわち、hsa-miR-4271、hsa-miR-642b-3p、hsa-miR-6075、hsa-miR-6125、hsa-miR-887-3p、hsa-miR-6851-5p、hsa-miR-6763-5p、hsa-miR-3928-3p、hsa-miR-4443、hsa-miR-3648、hsa-miR-149-3p、hsa-miR-4689、hsa-miR-4763-3p、hsa-miR-6729-5p、hsa-miR-3196、hsa-miR-8069、hsa-miR-1268a、hsa-miR-4739、hsa-miR-1268b、hsa-miR-5698、hsa-miR-6752-5p、hsa-miR-4507、hsa-miR-564、hsa-miR-4497、hsa-miR-6877-5p、hsa-miR-6087、hsa-miR-4731-5p、hsa-miR-615-5p、hsa-miR-760、hsa-miR-6891-5p、hsa-miR-6887-5p、hsa-miR-4525、hsa-miR-1914-3p、hsa-miR-619-5p、hsa-miR-5001-5p、hsa-miR-6722-3p、hsa-miR-3621、hsa-miR-4298、hsa-miR-675-5p及びhsa-miR-4655-5pからなる群から選択される少なくとも1つ以上のmiRNAも標的核酸として好ましく用いることができる。
本発明においては、上記の肺がんマーカーとしての標的核酸に特異的に結合可能な核酸を、肺がんを検出又は診断するための核酸、例えば核酸プローブ又はプライマーとして用いることができる。
(a)配列番号1~125、127~130、132~134、及び、561~578のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(b)配列番号1~125、127~130、132~134、及び、561~578のいずれかで表される塩基配列を含むポリヌクレオチド、
(c)配列番号1~125、127~130、132~134、及び、561~578のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(d)配列番号1~125、127~130、132~134、及び、561~578のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、に相補的な塩基配列を含むポリヌクレオチド、並びに、
(e)前記(a)~(d)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド。
(f)配列番号126、131及び579のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(g)配列番号126、131及び579のいずれかで表される塩基配列を含むポリヌクレオチド、
(h)配列番号126、131及び579のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(i)配列番号126、131及び579のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、に相補的な塩基配列を含むポリヌクレオチド、並びに、(j)前記(f)~(i)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド。
(k)配列番号135~174のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(l)配列番号135~174のいずれかで表される塩基配列を含むポリヌクレオチド、
(m)配列番号135~174のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(n)配列番号135~174のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、に相補的な塩基配列を含むポリヌクレオチド、並びに、
(o)前記(k)~(n)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド。
本発明はまた、肺がんマーカーである標的核酸を測定するための、本発明において核酸プローブ又はプライマーとして使用可能なポリヌクレオチド(これには、変異体、断片、又は誘導体を含みうる。以下、検出用ポリヌクレオチドと称することがある。)の1つ又は複数を含む肺がん検出用キット又はデバイスを提供する。
(1)配列番号1~125、127~130、132~134、及び、561~578のいずれかで表される塩基配列においてuがtである塩基配列又はその相補的配列において、15以上の連続した塩基を含むポリヌクレオチド。
(2)配列番号126、131及び579のいずれかで表される塩基配列においてuがtである塩基配列又はその相補的配列において、15以上の連続した塩基を含むポリヌクレオチド。
(3)配列番号135~174のいずれかで表される塩基配列においてuがtである塩基配列又はその相補的配列において、15以上の連続した塩基を含むポリヌクレオチド。
(1)配列番号1、53、113、125(マーカー:hsa-miR-6768-5p、hsa-miR-6088、hsa-miR-6717-5p、hsa-miR-614)の組み合わせ
(2)配列番号1、10、63、113(マーカー:hsa-miR-6768-5p、hsa-miR-6875-5p、hsa-miR-3162-5p、hsa-miR-6717-5p)の組み合わせ
(3)配列番号1、19、113、143(マーカー:hsa-miR-6768-5p、hsa-miR-3184-5p、hsa-miR-6717-5p、hsa-miR-4443)の組み合わせ
(4)配列番号1、10、113、126(マーカー:hsa-miR-6768-5p、hsa-miR-6875-5p、hsa-miR-6717-5p、hsa-miR-19b-3p)の組み合わせ
(5)配列番号1、2、10、113(マーカー:hsa-miR-6768-5p、hsa-miR-6836-3p、hsa-miR-6875-5p、hsa-miR-6717-5p)の組み合わせ
(1)配列番号2、19、53、113(マーカー:hsa-miR-6836-3p、hsa-miR-3184-5p、hsa-miR-6088、hsa-miR-6717-5p)の組み合わせ
(2)配列番号2、72、113、125(マーカー:hsa-miR-6836-3p、hsa-miR-3940-5p、hsa-miR-6717-5p、hsa-miR-614)の組み合わせ
(3)配列番号2、19、72、113(マーカー:hsa-miR-6836-3p、hsa-miR-3184-5p、hsa-miR-3940-5p、hsa-miR-6717-5p)の組み合わせ
(4)配列番号2、19、113、579(マーカー:hsa-miR-6836-3p、hsa-miR-3184-5p、hsa-miR-6717-5p、hsa-miR-1307-3p)の組み合わせ
(5)配列番号1、2、19、113(マーカー:hsa-miR-6768-5p、hsa-miR-6836-3p、hsa-miR-3184-5p、hsa-miR-6717-5p)の組み合わせ
(1)配列番号3、125、128、568(マーカー:hsa-miR-6782-5p、hsa-miR-614、hsa-miR-451a、hsa-miR-296-3p)の組み合わせ
(2)配列番号1、3、10、113(マーカー:hsa-miR-6768-5p、hsa-miR-6782-5p、hsa-miR-6875-5p、hsa-miR-6717-5p)の組み合わせ
(3)配列番号3、113、125、126(マーカー:hsa-miR-6782-5p、hsa-miR-6717-5p、hsa-miR-614、hsa-miR-19b-3p)の組み合わせ
(4)配列番号1、3、126、573(マーカー:hsa-miR-6768-5p、hsa-miR-6782-5p、hsa-miR-19b-3p、hsa-miR-1202)の組み合わせ
(5)配列番号3、126、130、561(マーカー:hsa-miR-6782-5p、hsa-miR-19b-3p、hsa-miR-223-3p、hsa-miR-6073)の組み合わせ
(1)配列番号1、10、113、143(マーカー:hsa-miR-6768-5p、hsa-miR-6875-5p、hsa-miR-6717-5p、hsa-miR-4443)の組み合わせ
(2)配列番号1、10、113、569(マーカー:hsa-miR-6768-5p、hsa-miR-6875-5p、hsa-miR-6717-5p、hsa-miR-4690-5p)の組み合わせ
(3)配列番号1、10、113、562(マーカー:hsa-miR-6768-5p、hsa-miR-6875-5p、hsa-miR-6717-5p、hsa-miR-6845-5p)の組み合わせ
(4)配列番号1、10、113、578(マーカー:hsa-miR-6768-5p、hsa-miR-6875-5p、hsa-miR-6717-5p、hsa-miR-4534)の組み合わせ
(5)配列番号1、7、10、113(マーカー:hsa-miR-6768-5p、hsa-miR-4258、hsa-miR-6875-5p、hsa-miR-6717-5p)の組み合わせ
(1)配列番号1、63、567、578(マーカー:hsa-miR-6768-5p、hsa-miR-3162-5p、hsa-miR-940、hsa-miR-4534)の組み合わせ
(2)配列番号1、53、63、578(マーカー:hsa-miR-6768-5p、hsa-miR-6088、hsa-miR-3162-5p、hsa-miR-4534)の組み合わせ
(3)配列番号1、63、162、573(マーカー:hsa-miR-6768-5p、hsa-miR-3162-5p、hsa-miR-615-5p、hsa-miR-1202)の組み合わせ
(4)配列番号1、63、162、578(マーカー:hsa-miR-6768-5p、hsa-miR-3162-5p、hsa-miR-615-5p、hsa-miR-4534)の組み合わせ
(5)配列番号1、63、576、578(マーカー:hsa-miR-6768-5p、hsa-miR-3162-5p、hsa-miR-4783-3p、hsa-miR-4534)の組み合わせ
(1)配列番号1、10、113、567(マーカー:hsa-miR-6768-5p、hsa-miR-6875-5p、hsa-miR-6717-5p、hsa-miR-940)の組み合わせ
(2)配列番号1、53、63、113(マーカー:hsa-miR-6768-5p、hsa-miR-6088、hsa-miR-3162-5p、hsa-miR-6717-5p)の組み合わせ
(3)配列番号1、53、113、143(マーカー:hsa-miR-6768-5p、hsa-miR-6088、hsa-miR-6717-5p、hsa-miR-4443)の組み合わせ
(4)配列番号2、19、113、125(マーカー:hsa-miR-6836-3p、hsa-miR-3184-5p、hsa-miR-6717-5p、hsa-miR-614)の組み合わせ
(5)配列番号2、10、113、130(マーカー:hsa-miR-6836-3p、hsa-miR-6875-5p、hsa-miR-6717-5p、hsa-miR-223-3p)の組み合わせ
(1)配列番号113、124、125、126(マーカー:hsa-miR-6717-5p、hsa-miR-187-5p、hsa-miR-614、hsa-miR-19b-3p)の組み合わせ
(2)配列番号124、125、128、568(マーカー:hsa-miR-187-5p、hsa-miR-614、hsa-miR-451a、hsa-miR-296-3p)の組み合わせ
(3)配列番号113、124、125、162(マーカー:hsa-miR-6717-5p、hsa-miR-187-5p、hsa-miR-614、hsa-miR-615-5p)の組み合わせ
(4)配列番号52、124、126、561(マーカー:hsa-miR-365a-5p、hsa-miR-187-5p、hsa-miR-19b-3p、hsa-miR-6073)の組み合わせ
(5)配列番号19、113、124、126(マーカー:hsa-miR-3184-5p、hsa-miR-6717-5p、hsa-miR-187-5p、hsa-miR-19b-3p)の組み合わせ
(1)配列番号1、113、125、160(マーカー:hsa-miR-6768-5p、hsa-miR-6717-5p、hsa-miR-614、hsa-miR-6087)の組み合わせ
(2)配列番号31、113、125、568(マーカー:hsa-miR-6889-5p、hsa-miR-6717-5p、hsa-miR-614、hsa-miR-296-3p)の組み合わせ
(3)配列番号2、53、113、125(マーカー:hsa-miR-6836-3p、hsa-miR-6088、hsa-miR-6717-5p、hsa-miR-614)の組み合わせ
(4)配列番号1、10、113、125(マーカー:hsa-miR-6768-5p、hsa-miR-6875-5p、hsa-miR-6717-5p、hsa-miR-614)の組み合わせ
(5)配列番号1、113、125、143(マーカー:hsa-miR-6768-5p、hsa-miR-6717-5p、hsa-miR-614、hsa-miR-4443)の組み合わせ
(1)配列番号1、126、561、573(マーカー:hsa-miR-6768-5p、hsa-miR-19b-3p、hsa-miR-6073、hsa-miR-1202)の組み合わせ
(2)配列番号113、125、126、568(マーカー:hsa-miR-6717-5p、hsa-miR-614、hsa-miR-19b-3p、hsa-miR-296-3p)の組み合わせ
(3)配列番号113、125、126、561(マーカー:hsa-miR-6717-5p、hsa-miR-614、hsa-miR-19b-3p、hsa-miR-6073)の組み合わせ
(4)配列番号1、113、125、126(マーカー:hsa-miR-6768-5p、hsa-miR-6717-5p、hsa-miR-614、hsa-miR-19b-3p)の組み合わせ
(5)配列番号1、52、126、561(マーカー:hsa-miR-6768-5p、hsa-miR-365a-5p、hsa-miR-19b-3p、hsa-miR-6073)の組み合わせ
(1)配列番号26、113、125、128(マーカー:hsa-miR-6842-5p、hsa-miR-6717-5p、hsa-miR-614、hsa-miR-451a)の組み合わせ
(2)配列番号1、113、125、128(マーカー:hsa-miR-6768-5p、hsa-miR-6717-5p、hsa-miR-614、hsa-miR-451a)の組み合わせ
(3)配列番号1、10、113、128(マーカー:hsa-miR-6768-5p、hsa-miR-6875-5p、hsa-miR-6717-5p、hsa-miR-451a)の組み合わせ
(4)配列番号31、113、125、128(マーカー:hsa-miR-6889-5p、hsa-miR-6717-5p、hsa-miR-614、hsa-miR-451a)の組み合わせ
(5)配列番号2、19、113、128(マーカー:hsa-miR-6836-3p、hsa-miR-3184-5p、hsa-miR-6717-5p、hsa-miR-451a)の組み合わせ
(1)配列番号1、3、130、143(マーカー:hsa-miR-6768-5p、hsa-miR-6782-5p、hsa-miR-223-3p、hsa-miR-4443)の組み合わせ
(2)配列番号1、10、113、130(マーカー:hsa-miR-6768-5p、hsa-miR-6875-5p、hsa-miR-6717-5p、hsa-miR-223-3p)の組み合わせ
(3)配列番号1、63、130、578(マーカー:hsa-miR-6768-5p、hsa-miR-3162-5p、hsa-miR-223-3p、hsa-miR-4534)の組み合わせ
(4)配列番号124、125、130、568(マーカー:hsa-miR-187-5p、hsa-miR-614、hsa-miR-223-3p、hsa-miR-296-3p)の組み合わせ
(5)配列番号2、19、113、130(マーカー:hsa-miR-6836-3p、hsa-miR-3184-5p、hsa-miR-6717-5p、hsa-miR-223-3p)の組み合わせ
(1)配列番号1、3、126、143(マーカー:hsa-miR-6768-5p、hsa-miR-6782-5p、hsa-miR-19b-3p、hsa-miR-4443)の組み合わせ
(2)配列番号1、63、130、143(マーカー:hsa-miR-6768-5p、hsa-miR-3162-5p、hsa-miR-223-3p、hsa-miR-4443)の組み合わせ
(3)配列番号1、10、52、143(マーカー:hsa-miR-6768-5p、hsa-miR-6875-5p、hsa-miR-365a-5p、hsa-miR-4443)の組み合わせ
(4)配列番号2、19、113、143(マーカー:hsa-miR-6836-3p、hsa-miR-3184-5p、hsa-miR-6717-5p、hsa-miR-4443)の組み合わせ
(5)配列番号63、124、130、143(マーカー:hsa-miR-3162-5p、hsa-miR-187-5p、hsa-miR-223-3p、hsa-miR-4443)の組み合わせ
(1)配列番号1、10、113、160(マーカー:hsa-miR-6768-5p、hsa-miR-6875-5p、hsa-miR-6717-5p、hsa-miR-6087)の組み合わせ
(2)配列番号7、113、125、160(マーカー:hsa-miR-4258、hsa-miR-6717-5p、hsa-miR-614、hsa-miR-6087)の組み合わせ
(3)配列番号1、113、160、567(マーカー:hsa-miR-6768-5p、hsa-miR-6717-5p、hsa-miR-6087、hsa-miR-940)の組み合わせ
(4)配列番号1、113、160、578(マーカー:hsa-miR-6768-5p、hsa-miR-6717-5p、hsa-miR-6087、hsa-miR-4534)の組み合わせ
(5)配列番号2、19、113、160(マーカー:hsa-miR-6836-3p、hsa-miR-3184-5p、hsa-miR-6717-5p、hsa-miR-6087)の組み合わせ
(1)配列番号113、125、130、561(マーカー:hsa-miR-6717-5p、hsa-miR-614、hsa-miR-223-3p、hsa-miR-6073)の組み合わせ
(2)配列番号7、126、143、561(マーカー:hsa-miR-4258、hsa-miR-19b-3p、hsa-miR-4443、hsa-miR-6073)の組み合わせ
(3)配列番号1、113、126、561(マーカー:hsa-miR-6768-5p、hsa-miR-6717-5p、hsa-miR-19b-3p、hsa-miR-6073)の組み合わせ
(4)配列番号1、126、561、568(マーカー:hsa-miR-6768-5p、hsa-miR-19b-3p、hsa-miR-6073、hsa-miR-296-3p)の組み合わせ
(5)配列番号7、113、126、561(マーカー:hsa-miR-4258、hsa-miR-6717-5p、hsa-miR-19b-3p、hsa-miR-6073)の組み合わせ
(1)配列番号7、125、126、568(マーカー:hsa-miR-4258、hsa-miR-614、hsa-miR-19b-3p、hsa-miR-296-3p)の組み合わせ
(2)配列番号124、125、126、568(マーカー:hsa-miR-187-5p、hsa-miR-614、hsa-miR-19b-3p、hsa-miR-296-3p)の組み合わせ
(3)配列番号7、113、125、568(マーカー:hsa-miR-4258、hsa-miR-6717-5p、hsa-miR-614、hsa-miR-296-3p)の組み合わせ
(4)配列番号1、113、125、568(マーカー:hsa-miR-6768-5p、hsa-miR-6717-5p、hsa-miR-614、hsa-miR-296-3p)の組み合わせ
(5)配列番号113、125、128、568(マーカー:hsa-miR-6717-5p、hsa-miR-614、hsa-miR-451a、hsa-miR-296-3p)の組み合わせ
(1)配列番号113、125、126、573(マーカー:hsa-miR-6717-5p、hsa-miR-614、hsa-miR-19b-3p、hsa-miR-1202)の組み合わせ
(2)配列番号1、113、125、573(マーカー:hsa-miR-6768-5p、hsa-miR-6717-5p、hsa-miR-614、hsa-miR-1202)の組み合わせ
(3)配列番号1、53、113、573(マーカー:hsa-miR-6768-5p、hsa-miR-6088、hsa-miR-6717-5p、hsa-miR-1202)の組み合わせ
(4)配列番号1、124、126、573(マーカー:hsa-miR-6768-5p、hsa-miR-187-5p、hsa-miR-19b-3p、hsa-miR-1202)の組み合わせ
(5)配列番号1、63、130、573(マーカー:hsa-miR-6768-5p、hsa-miR-3162-5p、hsa-miR-223-3p、hsa-miR-1202)の組み合わせ
(1)配列番号1、126、567、578(マーカー:hsa-miR-6768-5p、hsa-miR-19b-3p、hsa-miR-940、hsa-miR-4534)の組み合わせ
(2)配列番号1、19、113、578(マーカー:hsa-miR-6768-5p、hsa-miR-3184-5p、hsa-miR-6717-5p、hsa-miR-4534)の組み合わせ
(3)配列番号31、126、561、578(マーカー:hsa-miR-6889-5p、hsa-miR-19b-3p、hsa-miR-6073、hsa-miR-4534)の組み合わせ
(4)配列番号1、126、160、578(マーカー:hsa-miR-6768-5p、hsa-miR-19b-3p、hsa-miR-6087、hsa-miR-4534)の組み合わせ
(5)配列番号1、113、125、578(マーカー:hsa-miR-6768-5p、hsa-miR-6717-5p、hsa-miR-614、hsa-miR-4534)の組み合わせ
本発明のキット又はデバイスには、上で説明した本発明におけるポリヌクレオチド(これには、変異体、断片又は誘導体を包含しうる。)に加えて、肺がん検出を可能とする既知のポリヌクレオチド又は将来見出されるであろうポリヌクレオチドも含めることができる。
本発明はさらに、上記3で説明した本発明のキット又はデバイス(本発明で使用可能な上記の核酸を含む。)を用いて、検体中の、以下の群A:hsa-miR-6768-5p、hsa-miR-6836-3p、hsa-miR-6782-5p、hsa-miR-3663-3p、hsa-miR-1908-3p、hsa-miR-6726-5p、hsa-miR-4258、hsa-miR-1343-3p、hsa-miR-4516、hsa-miR-6875-5p、hsa-miR-4651、hsa-miR-6825-5p、hsa-miR-6840-3p、hsa-miR-6780b-5p、hsa-miR-6749-5p、hsa-miR-8063、hsa-miR-6784-5p、hsa-miR-3679-5p、hsa-miR-3184-5p、hsa-miR-663b、hsa-miR-6880-5p、hsa-miR-1908-5p、hsa-miR-92a-2-5p、hsa-miR-7975、hsa-miR-7110-5p、hsa-miR-6842-5p、hsa-miR-6857-5p、hsa-miR-5572、hsa-miR-3197、hsa-miR-6131、hsa-miR-6889-5p、hsa-miR-4454、hsa-miR-1199-5p、hsa-miR-1247-3p、hsa-miR-6800-5p、hsa-miR-6872-3p、hsa-miR-4649-5p、hsa-miR-6791-5p、hsa-miR-4433b-3p、hsa-miR-3135b、hsa-miR-128-2-5p、hsa-miR-4675、hsa-miR-4472、hsa-miR-6785-5p、hsa-miR-6741-5p、hsa-miR-7977、hsa-miR-3665、hsa-miR-128-1-5p、hsa-miR-4286、hsa-miR-6765-3p、hsa-miR-4632-5p、hsa-miR-365a-5p、hsa-miR-6088、hsa-miR-6816-5p、hsa-miR-6885-5p、hsa-miR-711、hsa-miR-6765-5p、hsa-miR-3180、hsa-miR-4442、hsa-miR-4792、hsa-miR-6721-5p、hsa-miR-6798-5p、hsa-miR-3162-5p、hsa-miR-6126、hsa-miR-4758-5p、hsa-miR-2392、hsa-miR-486-3p、hsa-miR-6727-5p、hsa-miR-4728-5p、hsa-miR-6746-5p、hsa-miR-4270、hsa-miR-3940-5p、hsa-miR-4725-3p、hsa-miR-7108-5p、hsa-miR-3656、hsa-miR-6879-5p、hsa-miR-6738-5p、hsa-miR-1260a、hsa-miR-4446-3p、hsa-miR-3131、hsa-miR-4463、hsa-miR-3185、hsa-miR-6870-5p、hsa-miR-6779-5p、hsa-miR-1273g-3p、hsa-miR-8059、hsa-miR-4697-5p、hsa-miR-4674、hsa-miR-4433-3p、hsa-miR-4257、hsa-miR-1915-5p、hsa-miR-4417、hsa-miR-1343-5p、hsa-miR-6781-5p、hsa-miR-4695-5p、hsa-miR-1237-5p、hsa-miR-6775-5p、hsa-miR-7845-5p、hsa-miR-4746-3p、hsa-miR-7641、hsa-miR-7847-3p、hsa-miR-6806-5p、hsa-miR-4467、hsa-miR-4726-5p、hsa-miR-4648、hsa-miR-6089、hsa-miR-1260b、hsa-miR-4532、hsa-miR-5195-3p、hsa-miR-3188、hsa-miR-6848-5p、hsa-miR-1233-5p、hsa-miR-6717-5p、hsa-miR-3195、hsa-miR-6757-5p、hsa-miR-8072、hsa-miR-4745-5p、hsa-miR-6511a-5p、hsa-miR-6776-5p、hsa-miR-371a-5p、hsa-miR-1227-5p、hsa-miR-7150、hsa-miR-1915-3p、hsa-miR-187-5p、hsa-miR-614、hsa-miR-1225-5p、hsa-miR-451a、hsa-miR-939-5p、hsa-miR-223-3p、hsa-miR-125a-3p、hsa-miR-92b-5p、hsa-miR-22-3p、hsa-miR-6073、hsa-miR-6845-5p、hsa-miR-6769b-5p、hsa-miR-4665-3p、hsa-miR-1913、hsa-miR-1228-3p、hsa-miR-940、hsa-miR-296-3p、hsa-miR-4690-5p、hsa-miR-548q、hsa-miR-663a、hsa-miR-1249、hsa-miR-1202、hsa-miR-7113-3p、hsa-miR-1225-3p、hsa-miR-4783-3p、hsa-miR-4448及びhsa-miR-4534から選択される肺がん由来の遺伝子の発現量、並びに場合により、以下の群B:hsa-miR-19b-3p、hsa-miR-1228-5p及びhsa-miR-1307-3pから選択される肺がん由来の遺伝子の発現量、並びに場合により、以下の群C:hsa-miR-4271、hsa-miR-642b-3p、hsa-miR-6075、hsa-miR-6125、hsa-miR-887-3p、hsa-miR-6851-5p、hsa-miR-6763-5p、hsa-miR-3928-3p、hsa-miR-4443、hsa-miR-3648、hsa-miR-149-3p、hsa-miR-4689、hsa-miR-4763-3p、hsa-miR-6729-5p、hsa-miR-3196、hsa-miR-8069、hsa-miR-1268a、hsa-miR-4739、hsa-miR-1268b、hsa-miR-5698、hsa-miR-6752-5p、hsa-miR-4507、hsa-miR-564、hsa-miR-4497、hsa-miR-6877-5p、hsa-miR-6087、hsa-miR-4731-5p、hsa-miR-615-5p、hsa-miR-760、hsa-miR-6891-5p、hsa-miR-6887-5p、hsa-miR-4525、hsa-miR-1914-3p、hsa-miR-619-5p、hsa-miR-5001-5p、hsa-miR-6722-3p、hsa-miR-3621、hsa-miR-4298、hsa-miR-675-5p及びhsa-miR-4655-5pから選択される肺がん由来の遺伝子の発現量、の1つ以上で表される肺がん由来の遺伝子の発現量、をin vitroで測定し、さらに、肺がんの罹患が疑われる被験体と、健常体(非肺がん患者を含む)とから採取した血液、血清、血漿等の検体について、検体中の上記遺伝子の発現量と、健常体の対照発現量とを用いて、例えば両発現量を比較して、当該検体中の標的核酸の発現量に統計学的に有意に差がある場合、被験体が、肺がんに罹患していると評価することを含む、肺がんの検出方法を提供する。
(a)被験体由来の検体を、in vitroで、本発明のキット又はデバイス中のポリヌクレオチドと接触させるステップ、
(b)検体中の標的核酸の発現量を、上記ポリヌクレオチドを核酸プローブ又はプライマーとして用いて測定するステップ、
(c)(b)の結果をもとに、当該被験体中の肺がん(細胞)の存在又は不存在を評価するステップ、
を含むことができる。
(a)配列番号1~125、及び127~130、132~134、及び、561~578のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(b)配列番号1~125、及び127~130、132~134、及び、561~578のいずれかで表される塩基配列を含むポリヌクレオチド、
(c)配列番号1~125、及び127~130、132~134、及び、561~578のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(d)配列番号1~125、及び127~130、132~134、及び、561~578のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、に相補的な塩基配列を含むポリヌクレオチド、及び
(e)前記(a)~(d)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択される。
(f)配列番号126、131及び579のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(g)配列番号126、131及び579のいずれかで表される塩基配列を含むポリヌクレオチド、
(h)配列番号126、131及び579のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(i)配列番号126、131及び579のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、に相補的な塩基配列を含むポリヌクレオチド、及び
(j)前記(f)~(i)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択される。
(k)配列番号135~174のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(l)配列番号135~174のいずれかで表される塩基配列を含むポリヌクレオチド、
(m)配列番号135~174のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(n)配列番号135~174のいずれかで表される塩基配列、もしくは当該塩基配列においてuがtである塩基配列、に相補的な塩基配列を含むポリヌクレオチド、及び
(o)前記(k)~(n)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択されるポリヌクレオチドである。
(a)被験体の検体から調製されたRNA又はそれから転写された相補的ポリヌクレオチド(cDNA)を、本発明のキット又はデバイス中のポリヌクレオチドと結合させるステップ、
(b)当該ポリヌクレオチドに結合した検体由来のRNA又は当該RNAから合成されたcDNAを、上記ポリヌクレオチドを核酸プローブとして用いるハイブリダイゼーションによって、あるいは、上記ポリヌクレオチドをプライマーとして用いる定量RT-PCRによって測定するステップ、
(c)上記(b)の測定結果に基づいて、肺がん(由来の遺伝子の発現)の存在又は不存在を評価するステップ、
を含むことができる。
このようなハイブリダイゼーション法には、例えばノーザンブロット法、サザンブロット法、RT-PCR法、DNAチップ解析法、in situハイブリダイゼーション法、ノーザンハイブリダイゼーション法、サザンハイブリダイゼーション法などを使用することができる。
ここで、xはサポートベクトル、γは超平面の複雑さを調整するカーネルパラメータを表す。
(a)肺がん患者由来の肺がん由来遺伝子を含む組織及び/又は健常体由来の肺がん由来遺伝子を含まない組織であることが既に知られている検体中の標的遺伝子の発現量を、本発明による検出用ポリヌクレオチド、キット又はデバイス(例えばDNAチップ)を用いて測定するステップ、
(b)(a)で測定された発現量の測定値から、上記の式1~3、5及び6の判別式を作成するステップ、
(c)被験体由来の検体中の当該標的遺伝子の発現量を、本発明による検出用ポリヌクレオチド、キット又はデバイス(例えばDNAチップ)を用いて測定し、(b)で作成した判別式に測定値を代入して、得られた結果に基づいて検体が肺がん由来の標的遺伝子の発現を含むこと及び/又は含まないことを決定又は評価する、あるいはその発現量を健常体由来の対照と比較し評価する、ステップ、
を含むことができる。ここで、式1~3、5及び6の式中のxは説明変数であり、上記2節に記載したポリヌクレオチド類から選択されるポリヌクレオチド又はその断片等を測定することによって得られる値を含み、具体的には本発明の肺がん患者と健常体を判別するための説明変数は、例えば下記の(1)~(3)より選択される遺伝子発現量である。
(1)配列番号1~125、127~130、132~134、及び、561~578のいずれかで表される塩基配列又はその相補的配列において、15以上の連続した塩基を含むDNAのいずれかによって測定される肺がん患者もしくは健常体の血清における遺伝子発現量。
(2)配列番号126、131及び579のいずれかで表される塩基配列又はその相補的配列において、15以上の連続した塩基を含むDNAのいずれかによって測定される肺がん患者もしくは健常体の血清における遺伝子発現量。
(3)配列番号135~174のいずれかで表される塩基配列又はその相補的配列において、15以上の連続した塩基を含むDNAのいずれかによって測定される肺がん患者もしくは健常体の血清における遺伝子発現量。
<肺がん患者と健常体の検体の採取>
インフォームドコンセントを得た健常体100人と肺がん以外の原発がんが認められていない肺がん患者17人(肺腺がんは8例で、うち6例がT2N0M0、1例がT2N1M0、1例がT2N2M0。扁平上皮がんは8例で、うち5例がT2N0M0、1例がT4N0M0、1例がT2N1M0、1例がT4N2M0)からベノジェクトII真空採血管VP-AS109K60(テルモ株式会社)を用いてそれぞれ血清を採取し、学習検体群とした。同様に、インフォームドコンセントを得た健常体50人と肺がん以外の原発がんが認められていない肺がん患者8人(肺腺がんは5例で、うち3例がT2N0M0、1例がT3N0M0、1例がT4N2M0。扁平上皮がんは3例で、うち1例がT2N0M0、1例がT4N0M0、1例がT2N1M0)からベノジェクトII真空採血管VP-AS109K60(テルモ株式会社)を用いてそれぞれ血清を採取し、テスト検体群とした。これらの肺がん検体の組織型と病期を表2-1、表2-2にまとめた。
検体として上記学習検体群、テスト検体群合わせて健常体150人と肺がん患者25人の合計175人からそれぞれ得られた血清300μLから、3D-Gene(登録商標)RNA extraction reagent from liquid sample kit(東レ株式会社)中のRNA抽出用試薬を用いて、同社の定めるプロトコールに従ってtotal RNAを得た。
検体として上記学習検体群、テスト検体群合わせて健常体150人と肺がん患者25人の合計175人の血清から得たtotal RNAに対して、3D-Gene(登録商標)miRNA Labeling kit(東レ株式会社)を用いて同社が定めるプロトコール(ver2.20)に基づいてmiRNAを蛍光標識した。オリゴDNAチップとして、miRBase release 20に登録されているmiRNAの中で、2,555種のmiRNAと相補的な配列を有するプローブを搭載した3D-Gene(登録商標)Human miRNA Oligo chip(東レ株式会社)を用い、同社が定めるプロトコールに基づいてストリンジェントな条件で、total RNA中のmiRNAとDNAチップ上のプローブとのハイブリダイゼーション及びハイブリダイゼーション後の洗浄を行った。DNAチップを3D-Gene(登録商標)スキャナー(東レ株式会社)を用いてスキャンし、画像を取得して3D-Gene(登録商標)Extraction(東レ株式会社)にて蛍光強度を数値化した。数値化された蛍光強度を、底が2の対数値に変換して遺伝子発現量とし、ブランク値の減算を行い、欠損値は各DNAチップにおける遺伝子発現量の最小値の対数値から0.1を減算した値で置換した。その結果、肺がん患者25人の血清及び健常体150人の血清に対する、網羅的なmiRNAの遺伝子発現量を得た。数値化されたmiRNAの遺伝子発現量を用いた計算及び統計解析は、R言語3.0.2(R Development Core Team(2013).R:A language and environment for statistical computing.R Foundation for Statistical Computing,URL http://www.R-project.org/)及びMASSパッケージ7.3-30(Venables,W.N.&Ripley,B.D.(2002)Modern Applied Statistics with S.Fourth Edition.Springer,New York.ISBN 0-387-95457-0)を用いて実施した。
<肺がん以外のがんの検体の採取>
インフォームドコンセントを得た他の臓器にがんが認められていない、膵臓がん患者75人、胆道がん患者62人、大腸がん患者32人、胃がん患者35人、食道がん患者32人、肝がん患者33人、及び膵胆道良性疾患患者13人からベノジェクトII真空採血管VP-AS109K60(テルモ株式会社)を用いてそれぞれ血清を採取し、参考例1の肺がん患者17人と健常体99人と合わせて学習検体群とした。同様に、インフォームドコンセントを得た他の臓器にがんが認められていない、膵臓がん患者28人、胆道がん患者38人、大腸がん患者18人、胃がん患者15人、食道がん患者18人、肝がん患者19人、及び膵胆道良性疾患患者8人からベノジェクトII真空採血管VP-AS109K60(テルモ株式会社)を用いてそれぞれ血清を採取し、参考例1の肺がん以外の臓器にがんが認められていない肺がん患者8人、健常体51人と合わせてテスト検体群とした。以降の操作は参考例1と同様に行った。
<学習検体群の検体を用いた遺伝子マーカーの選定とテスト検体群の検体を用いた単独の遺伝子マーカーの肺がん判別性能の評価方法>
本実施例では、学習検体群から肺がんを健常体と判別するための遺伝子マーカーを選定し、学習検体群とは独立したテスト検体群の検体において選定した遺伝子マーカーについてそれぞれ単独での肺がん判別性能を評価する方法を検討した。
<テスト検体群検体を用いた複数の遺伝子マーカーの組合せによる肺がん判別性能の評価方法>
本実施例では、実施例1で選定された遺伝子マーカーを組合せて肺がん判別性能を評価する方法を検討した。具体的には、実施例1において選択された配列番号1~134で表される塩基配列からなるポリヌクレオチドのうち、新規に見出された配列番号1~125、127~130、及び、132~134で表される塩基配列からなるポリヌクレオチドのいずれかの発現量測定値を少なくとも1つ以上含む2個のポリヌクレオチドの組み合わせ8,910通りについてフィッシャーの判別分析を行い、肺がんの存在の有無を判別する判別式を構築した。次に、上記で作成した判別式を用いてテスト検体群における精度・感度・特異度を算出し、選定されたポリヌクレオチドの判別性能を独立した検体で検証した。
<全検体を用いた場合の遺伝子マーカーの選定と獲られた遺伝子マーカーの肺がん判別性能の評価方法>
本実施例では、上記実施例1及び実施例2で用いた学習検体群及びテスト検体群の検体を統合し全検体を用いて、遺伝子マーカーの選定、及びその肺がん判別性能評価を行った。
<テスト検体群検体を用いた複数の遺伝子マーカーの組み合わせによる肺がん特異的な判別性能の評価方法>
本実施例では、実施例1で選定された遺伝子マーカーを使用して、参考例2に記載した検体群の学習検体群を対象とし、実施例1に記載の方法と同様の方法で、肺がん患者と健康体、膵臓がん患者、胆道がん患者、大腸がん患者、胃がん患者、肝がん患者及び膵胆道良性疾患患者からなる対照群との血清中のmiRNAの遺伝子発現量の比較を行い、診断用遺伝子を選択した。その結果選択された、配列番号561~579で表される塩基配列からなるポリヌクレオチドを更に組合せて肺がん特異的な判別性能を評価する方法を検討した。
Claims (25)
- 肺がんマーカーである、miR-6768-5p、miR-6836-3p、miR-6782-5p、miR-3663-3p、miR-1908-3p、miR-6726-5p、miR-4258、miR-1343-3p、miR-4516、miR-6875-5p、miR-4651、miR-6825-5p、miR-6840-3p、miR-6780b-5p、miR-6749-5p、miR-8063、miR-6784-5p、miR-3679-5p、miR-3184-5p、miR-663b、miR-6880-5p、miR-1908-5p、miR-92a-2-5p、miR-7975、miR-7110-5p、miR-6842-5p、miR-6857-5p、miR-5572、miR-3197、miR-6131、miR-6889-5p、miR-4454、miR-1199-5p、miR-1247-3p、miR-6800-5p、miR-6872-3p、miR-4649-5p、miR-6791-5p、miR-4433b-3p、miR-3135b、miR-128-2-5p、miR-4675、miR-4472、miR-6785-5p、miR-6741-5p、miR-7977、miR-3665、miR-128-1-5p、miR-4286、miR-6765-3p、miR-4632-5p、miR-365a-5p、miR-6088、miR-6816-5p、miR-6885-5p、miR-711、miR-6765-5p、miR-3180、miR-4442、miR-4792、miR-6721-5p、miR-6798-5p、miR-3162-5p、miR-6126、miR-4758-5p、miR-2392、miR-486-3p、miR-6727-5p、miR-4728-5p、miR-6746-5p、miR-4270、miR-3940-5p、miR-4725-3p、miR-7108-5p、miR-3656、miR-6879-5p、miR-6738-5p、miR-1260a、miR-4446-3p、miR-3131、miR-4463、miR-3185、miR-6870-5p、miR-6779-5p、miR-1273g-3p、miR-8059、miR-4697-5p、miR-4674、miR-4433-3p、miR-4257、miR-1915-5p、miR-4417、miR-1343-5p、miR-6781-5p、miR-4695-5p、miR-1237-5p、miR-6775-5p、miR-7845-5p、miR-4746-3p、miR-7641、miR-7847-3p、miR-6806-5p、miR-4467、miR-4726-5p、miR-4648、miR-6089、miR-1260b、miR-4532、miR-5195-3p、miR-3188、miR-6848-5p、miR-1233-5p、miR-6717-5p、miR-3195、miR-6757-5p、miR-8072、miR-4745-5p、miR-6511a-5p、miR-6776-5p、miR-371a-5p、miR-1227-5p、miR-7150、miR-1915-3p、miR-187-5p、miR-614、miR-1225-5p、miR-451a、miR-939-5p、miR-223-3p、miR-125a-3p、miR-92b-5p、miR-22-3p、miR-6073、miR-6845-5p、miR-6769b-5p、miR-4665-3p、miR-1913、miR-1228-3p、miR-940、miR-296-3p、miR-4690-5p、miR-548q、miR-663a、miR-1249、miR-1202、miR-7113-3p、miR-1225-3p、miR-4783-3p、miR-4448及びmiR-4534からなる群から選択される少なくとも1つ以上のポリヌクレオチドと特異的に結合可能な核酸を含む、肺がんの検出用キット。
- miR-6768-5pがhsa-miR-6768-5pであり、miR-6836-3pがhsa-miR-6836-3pであり、miR-6782-5pがhsa-miR-6782-5pであり、miR-3663-3pがhsa-miR-3663-3pであり、miR-1908-3pがhsa-miR-1908-3pであり、miR-6726-5pがhsa-miR-6726-5pであり、miR-4258がhsa-miR-4258であり、miR-1343-3pがhsa-miR-1343-3pであり、miR-4516がhsa-miR-4516であり、miR-6875-5pがhsa-miR-6875-5pであり、miR-4651がhsa-miR-4651であり、miR-6825-5pがhsa-miR-6825-5pであり、miR-6840-3pがhsa-miR-6840-3pであり、miR-6780b-5pがhsa-miR-6780b-5pであり、miR-6749-5pがhsa-miR-6749-5pであり、miR-8063がhsa-miR-8063であり、miR-6784-5pがhsa-miR-6784-5pであり、miR-3679-5pがhsa-miR-3679-5pであり、miR-3184-5pがhsa-miR-3184-5pであり、miR-663bがhsa-miR-663bであり、miR-6880-5pがhsa-miR-6880-5pであり、miR-1908-5pがhsa-miR-1908-5pであり、miR-92a-2-5pがhsa-miR-92a-2-5pであり、miR-7975がhsa-miR-7975であり、miR-7110-5pがhsa-miR-7110-5pであり、miR-6842-5pがhsa-miR-6842-5pであり、miR-6857-5pがhsa-miR-6857-5pであり、miR-5572がhsa-miR-5572であり、miR-3197がhsa-miR-3197であり、miR-6131がhsa-miR-6131であり、miR-6889-5pがhsa-miR-6889-5pであり、miR-4454がhsa-miR-4454であり、miR-1199-5pがhsa-miR-1199-5pであり、miR-1247-3pがhsa-miR-1247-3pであり、miR-6800-5pがhsa-miR-6800-5pであり、miR-6872-3pがhsa-miR-6872-3pであり、miR-4649-5pがhsa-miR-4649-5pであり、miR-6791-5pがhsa-miR-6791-5pであり、miR-4433b-3pがhsa-miR-4433b-3pであり、miR-3135bがhsa-miR-3135bであり、miR-128-2-5pがhsa-miR-128-2-5pであり、miR-4675がhsa-miR-4675であり、miR-4472がhsa-miR-4472であり、miR-6785-5pがhsa-miR-6785-5pであり、miR-6741-5pがhsa-miR-6741-5pであり、miR-7977がhsa-miR-7977であり、miR-3665がhsa-miR-3665であり、miR-128-1-5pがhsa-miR-128-1-5pであり、miR-4286がhsa-miR-4286であり、miR-6765-3pがhsa-miR-6765-3pであり、miR-4632-5pがhsa-miR-4632-5pであり、miR-365a-5pがhsa-miR-365a-5pであり、miR-6088がhsa-miR-6088であり、miR-6816-5pがhsa-miR-6816-5pであり、miR-6885-5pがhsa-miR-6885-5pであり、miR-711がhsa-miR-711であり、miR-6765-5pがhsa-miR-6765-5pであり、miR-3180がhsa-miR-3180であり、miR-4442がhsa-miR-4442であり、miR-4792がhsa-miR-4792であり、miR-6721-5pがhsa-miR-6721-5pであり、miR-6798-5pがhsa-miR-6798-5pであり、miR-3162-5pがhsa-miR-3162-5pであり、miR-6126がhsa-miR-6126であり、miR-4758-5pがhsa-miR-4758-5pであり、miR-2392がhsa-miR-2392であり、miR-486-3pがhsa-miR-486-3pであり、miR-6727-5pがhsa-miR-6727-5pであり、miR-4728-5pがhsa-miR-4728-5pであり、miR-6746-5pがhsa-miR-6746-5pであり、miR-4270がhsa-miR-4270であり、miR-3940-5pがhsa-miR-3940-5pであり、miR-4725-3pがhsa-miR-4725-3pであり、miR-7108-5pがhsa-miR-7108-5pであり、miR-3656がhsa-miR-3656であり、miR-6879-5pがhsa-miR-6879-5pであり、miR-6738-5pがhsa-miR-6738-5pであり、miR-1260aがhsa-miR-1260aであり、miR-4446-3pがhsa-miR-4446-3pであり、miR-3131がhsa-miR-3131であり、miR-4463がhsa-miR-4463であり、miR-3185がhsa-miR-3185であり、miR-6870-5pがhsa-miR-6870-5pであり、miR-6779-5pがhsa-miR-6779-5pであり、miR-1273g-3pがhsa-miR-1273g-3pであり、miR-8059がhsa-miR-8059であり、miR-4697-5pがhsa-miR-4697-5pであり、miR-4674がhsa-miR-4674であり、miR-4433-3pがhsa-miR-4433-3pであり、miR-4257がhsa-miR-4257であり、miR-1915-5pがhsa-miR-1915-5pであり、miR-4417がhsa-miR-4417であり、miR-1343-5pがhsa-miR-1343-5pであり、miR-6781-5pがhsa-miR-6781-5pであり、miR-4695-5pがhsa-miR-4695-5pであり、miR-1237-5pがhsa-miR-1237-5pであり、miR-6775-5pがhsa-miR-6775-5pであり、miR-7845-5pがhsa-miR-7845-5pであり、miR-4746-3pがhsa-miR-4746-3pであり、miR-7641がhsa-miR-7641であり、miR-7847-3pがhsa-miR-7847-3pであり、miR-6806-5pがhsa-miR-6806-5pであり、miR-4467がhsa-miR-4467であり、miR-4726-5pがhsa-miR-4726-5pであり、miR-4648がhsa-miR-4648であり、miR-6089がhsa-miR-6089であり、miR-1260bがhsa-miR-1260bであり、miR-4532がhsa-miR-4532であり、miR-5195-3pがhsa-miR-5195-3pであり、miR-3188がhsa-miR-3188であり、miR-6848-5pがhsa-miR-6848-5pであり、miR-1233-5pがhsa-miR-1233-5pであり、miR-6717-5pがhsa-miR-6717-5pであり、miR-3195がhsa-miR-3195であり、miR-6757-5pがhsa-miR-6757-5pであり、miR-8072がhsa-miR-8072であり、miR-4745-5pがhsa-miR-4745-5pであり、miR-6511a-5pがhsa-miR-6511a-5pであり、miR-6776-5pがhsa-miR-6776-5pであり、miR-371a-5pがhsa-miR-371a-5pであり、miR-1227-5pがhsa-miR-1227-5pであり、miR-7150がhsa-miR-7150であり、miR-1915-3pがhsa-miR-1915-3p、miR-187-5pがhsa-miR-187-5pであり、miR-614がhsa-miR-614であり、miR-1225-5pがhsa-miR-1225-5pであり、miR-451aがhsa-miR-451aであり、miR-939-5pがhsa-miR-939-5pであり、miR-223-3pがhsa-miR-223-3pであり、miR-125a-3pがhsa-miR-125a-3pであり、miR-92b-5pがhsa-miR-92b-5pであり、miR-22-3pがhsa-miR-22-3pであり、miR-6073がhsa-miR-6073であり、miR-6845-5pがhsa-miR-6845-5pであり、miR-6769b-5pがhsa-miR-6769b-5pであり、miR-4665-3pがhsa-miR-4665-3pであり、miR-1913がhsa-miR-1913であり、miR-1228-3pがhsa-miR-1228-3pであり、miR-940がhsa-miR-940であり、miR-296-3pがhsa-miR-296-3pであり、miR-4690-5pがhsa-miR-4690-5pであり、miR-548qがhsa-miR-548qであり、miR-663aがhsa-miR-663aであり、miR-1249がhsa-miR-1249であり、miR-1202がhsa-miR-1202であり、miR-7113-3pがhsa-miR-7113-3pであり、miR-1225-3pがhsa-miR-1225-3pであり、miR-4783-3pがhsa-miR-4783-3pであり、miR-4448がhsa-miR-4448であり、及び、miR-4534がhsa-miR-4534である、請求項1に記載のキット。
- 前記核酸が、下記の(a)~(e)に示すポリヌクレオチド:
(a)配列番号1~125、127~130、132~134、及び、561~578のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(b)配列番号1~125、127~130、132~134、及び、561~578のいずれかで表される塩基配列を含むポリヌクレオチド、
(c)配列番号1~125、127~130、132~134、及び、561~578のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(d)配列番号1~125、127~130、132~134、及び、561~578のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列を含むポリヌクレオチド、及び
(e)前記(a)~(d)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択されるポリヌクレオチドである、請求項1又は2に記載のキット。 - 前記キットが、別の肺がんマーカーである、miR-19b-3p、miR-1228-5p及びmiR-1307-3pからなる群から選択される少なくとも1つ以上のポリヌクレオチドと特異的に結合可能な核酸をさらに含む、請求項1~3のいずれか1項に記載のキット。
- miR-19b-3pがhsa-miR-19b-3pであり、miR-1228-5pがhsa-miR-1228-5pであり、及び、miR-1307-3pがhsa-miR-1307-3pである、請求項4に記載のキット。
- 前記核酸が、下記の(f)~(j)に示すポリヌクレオチド:
(f)配列番号126、131及び579のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(g)配列番号126、131及び579のいずれかで表される塩基配列を含むポリヌクレオチド、
(h)配列番号126、131及び579のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(i)配列番号126、131及び579のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列を含むポリヌクレオチド、及び
(j)前記(f)~(i)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、からなる群から選択されるポリヌクレオチドである、請求項4又は5に記載のキット。 - 前記キットが、別の肺がんマーカーである、miR-4271、miR-642b-3p、miR-6075、miR-6125、miR-887-3p、miR-6851-5p、miR-6763-5p、miR-3928-3p、miR-4443、miR-3648、miR-149-3p、miR-4689、miR-4763-3p、miR-6729-5p、miR-3196、miR-8069、miR-1268a、miR-4739、miR-1268b、miR-5698、miR-6752-5p、miR-4507、miR-564、miR-4497、miR-6877-5p、miR-6087、miR-4731-5p、miR-615-5p、miR-760、miR-6891-5p、miR-6887-5p、miR-4525、miR-1914-3p、miR-619-5p、miR-5001-5p、miR-6722-3p、miR-3621、miR-4298、miR-675-5p及びmiR-4655-5pからなる群から選択される少なくとも1つ以上のポリヌクレオチドと特異的に結合可能な核酸をさらに含む、請求項1~6のいずれか1項に記載のキット。
- miR-4271がhsa-miR-4271であり、miR-642b-3pがhsa-miR-642b-3pであり、miR-6075がhsa-miR-6075であり、miR-6125がhsa-miR-6125であり、miR-887-3pがhsa-miR-887-3pであり、miR-6851-5pがhsa-miR-6851-5pであり、miR-6763-5pがhsa-miR-6763-5pであり、miR-3928-3pがhsa-miR-3928-3pであり、miR-4443がhsa-miR-4443であり、miR-3648がhsa-miR-3648であり、miR-149-3pがhsa-miR-149-3pであり、miR-4689がhsa-miR-4689であり、miR-4763-3pがhsa-miR-4763-3pであり、miR-6729-5pがhsa-miR-6729-5pであり、miR-3196がhsa-miR-3196であり、miR-8069がhsa-miR-8069であり、miR-1268aがhsa-miR-1268aであり、miR-4739がhsa-miR-4739であり、miR-1268bがhsa-miR-1268bであり、miR-5698がhsa-miR-5698であり、miR-6752-5pがhsa-miR-6752-5pであり、miR-4507がhsa-miR-4507であり、miR-564がhsa-miR-564であり、miR-4497がhsa-miR-4497であり、miR-6877-5pがhsa-miR-6877-5pであり、miR-6087がhsa-miR-6087であり、miR-4731-5pがhsa-miR-4731-5pであり、miR-615-5pがhsa-miR-615-5pであり、miR-760がhsa-miR-760であり、miR-6891-5pがhsa-miR-6891-5pであり、miR-6887-5pがhsa-miR-6887-5pであり、miR-4525がhsa-miR-4525であり、miR-1914-3pがhsa-miR-1914-3pであり、miR-619-5pがhsa-miR-619-5pであり、miR-5001-5pがhsa-miR-5001-5pであり、miR-6722-3pがhsa-miR-6722-3pであり、miR-3621がhsa-miR-3621であり、miR-4298がhsa-miR-4298であり、miR-675-5pがhsa-miR-675-5pであり、及び、miR-4655-5pがhsa-miR-4655-5pである、請求項7に記載のキット。
- 前記核酸が、下記の(k)~(o)に示すポリヌクレオチド:
(k)配列番号135~174のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(l)配列番号135~174のいずれかで表される塩基配列を含むポリヌクレオチド、
(m)配列番号135~174のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(n)配列番号135~174のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列を含むポリヌクレオチド、及び
(o)前記(k)~(n)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択されるポリヌクレオチドである、請求項7又は8に記載のキット。 - 前記キットが、請求項1又は2に記載のすべての肺がんマーカーから選択される少なくとも2つ以上のポリヌクレオチドのそれぞれと特異的に結合可能な少なくとも2つ以上の核酸を含む、請求項1~9のいずれか1項に記載のキット。
- 肺がんマーカーである、miR-6768-5p、miR-6836-3p、miR-6782-5p、miR-3663-3p、miR-1908-3p、miR-6726-5p、miR-4258、miR-1343-3p、miR-4516、miR-6875-5p、miR-4651、miR-6825-5p、miR-6840-3p、miR-6780b-5p、miR-6749-5p、miR-8063、miR-6784-5p、miR-3679-5p、miR-3184-5p、miR-663b、miR-6880-5p、miR-1908-5p、miR-92a-2-5p、miR-7975、miR-7110-5p、miR-6842-5p、miR-6857-5p、miR-5572、miR-3197、miR-6131、miR-6889-5p、miR-4454、miR-1199-5p、miR-1247-3p、miR-6800-5p、miR-6872-3p、miR-4649-5p、miR-6791-5p、miR-4433b-3p、miR-3135b、miR-128-2-5p、miR-4675、miR-4472、miR-6785-5p、miR-6741-5p、miR-7977、miR-3665、miR-128-1-5p、miR-4286、miR-6765-3p、miR-4632-5p、miR-365a-5p、miR-6088、miR-6816-5p、miR-6885-5p、miR-711、miR-6765-5p、miR-3180、miR-4442、miR-4792、miR-6721-5p、miR-6798-5p、miR-3162-5p、miR-6126、miR-4758-5p、miR-2392、miR-486-3p、miR-6727-5p、miR-4728-5p、miR-6746-5p、miR-4270、miR-3940-5p、miR-4725-3p、miR-7108-5p、miR-3656、miR-6879-5p、miR-6738-5p、miR-1260a、miR-4446-3p、miR-3131、miR-4463、miR-3185、miR-6870-5p、miR-6779-5p、miR-1273g-3p、miR-8059、miR-4697-5p、miR-4674、miR-4433-3p、miR-4257、miR-1915-5p、miR-4417、miR-1343-5p、miR-6781-5p、miR-4695-5p、miR-1237-5p、miR-6775-5p、miR-7845-5p、miR-4746-3p、miR-7641、miR-7847-3p、miR-6806-5p、miR-4467、miR-4726-5p、miR-4648、miR-6089、miR-1260b、miR-4532、miR-5195-3p、miR-3188、miR-6848-5p、miR-1233-5p、miR-6717-5p、miR-3195、miR-6757-5p、miR-8072、miR-4745-5p、miR-6511a-5p、miR-6776-5p、miR-371a-5p、miR-1227-5p、miR-7150、miR-1915-3p、miR-187-5p、miR-614、miR-1225-5p、miR-451a、miR-939-5p、miR-223-3p、miR-125a-3p、miR-92b-5p、miR-22-3p、miR-6073、miR-6845-5p、miR-6769b-5p、miR-4665-3p、miR-1913、miR-1228-3p、miR-940、miR-296-3p、miR-4690-5p、miR-548q、miR-663a、miR-1249、miR-1202、miR-7113-3p、miR-1225-3p、miR-4783-3p、miR-4448及びmiR-4534からなる群から選択される少なくとも1つ以上のポリヌクレオチドと特異的に結合可能な核酸を含む、肺がんの検出用デバイス。
- miR-6768-5pがhsa-miR-6768-5pであり、miR-6836-3pがhsa-miR-6836-3pであり、miR-6782-5pがhsa-miR-6782-5pであり、miR-3663-3pがhsa-miR-3663-3pであり、miR-1908-3pがhsa-miR-1908-3pであり、miR-6726-5pがhsa-miR-6726-5pであり、miR-4258がhsa-miR-4258であり、miR-1343-3pがhsa-miR-1343-3pであり、miR-4516がhsa-miR-4516であり、miR-6875-5pがhsa-miR-6875-5pであり、miR-4651がhsa-miR-4651であり、miR-6825-5pがhsa-miR-6825-5pであり、miR-6840-3pがhsa-miR-6840-3pであり、miR-6780b-5pがhsa-miR-6780b-5pであり、miR-6749-5pがhsa-miR-6749-5pであり、miR-8063がhsa-miR-8063であり、miR-6784-5pがhsa-miR-6784-5pであり、miR-3679-5pがhsa-miR-3679-5pであり、miR-3184-5pがhsa-miR-3184-5pであり、miR-663bがhsa-miR-663bであり、miR-6880-5pがhsa-miR-6880-5pであり、miR-1908-5pがhsa-miR-1908-5pであり、miR-92a-2-5pがhsa-miR-92a-2-5pであり、miR-7975がhsa-miR-7975であり、miR-7110-5pがhsa-miR-7110-5pであり、miR-6842-5pがhsa-miR-6842-5pであり、miR-6857-5pがhsa-miR-6857-5pであり、miR-5572がhsa-miR-5572であり、miR-3197がhsa-miR-3197であり、miR-6131がhsa-miR-6131であり、miR-6889-5pがhsa-miR-6889-5pであり、miR-4454がhsa-miR-4454であり、miR-1199-5pがhsa-miR-1199-5pであり、miR-1247-3pがhsa-miR-1247-3pであり、miR-6800-5pがhsa-miR-6800-5pであり、miR-6872-3pがhsa-miR-6872-3pであり、miR-4649-5pがhsa-miR-4649-5pであり、miR-6791-5pがhsa-miR-6791-5pであり、miR-4433b-3pがhsa-miR-4433b-3pであり、miR-3135bがhsa-miR-3135bであり、miR-128-2-5pがhsa-miR-128-2-5pであり、miR-4675がhsa-miR-4675であり、miR-4472がhsa-miR-4472であり、miR-6785-5pがhsa-miR-6785-5pであり、miR-6741-5pがhsa-miR-6741-5pであり、miR-7977がhsa-miR-7977であり、miR-3665がhsa-miR-3665であり、miR-128-1-5pがhsa-miR-128-1-5pであり、miR-4286がhsa-miR-4286であり、miR-6765-3pがhsa-miR-6765-3pであり、miR-4632-5pがhsa-miR-4632-5pであり、miR-365a-5pがhsa-miR-365a-5pであり、miR-6088がhsa-miR-6088であり、miR-6816-5pがhsa-miR-6816-5pであり、miR-6885-5pがhsa-miR-6885-5pであり、miR-711がhsa-miR-711であり、miR-6765-5pがhsa-miR-6765-5pであり、miR-3180がhsa-miR-3180であり、miR-4442がhsa-miR-4442であり、miR-4792がhsa-miR-4792であり、miR-6721-5pがhsa-miR-6721-5pであり、miR-6798-5pがhsa-miR-6798-5pであり、miR-3162-5pがhsa-miR-3162-5pであり、miR-6126がhsa-miR-6126であり、miR-4758-5pがhsa-miR-4758-5pであり、miR-2392がhsa-miR-2392であり、miR-486-3pがhsa-miR-486-3pであり、miR-6727-5pがhsa-miR-6727-5pであり、miR-4728-5pがhsa-miR-4728-5pであり、miR-6746-5pがhsa-miR-6746-5pであり、miR-4270がhsa-miR-4270であり、miR-3940-5pがhsa-miR-3940-5pであり、miR-4725-3pがhsa-miR-4725-3pであり、miR-7108-5pがhsa-miR-7108-5pであり、miR-3656がhsa-miR-3656であり、miR-6879-5pがhsa-miR-6879-5pであり、miR-6738-5pがhsa-miR-6738-5pであり、miR-1260aがhsa-miR-1260aであり、miR-4446-3pがhsa-miR-4446-3pであり、miR-3131がhsa-miR-3131であり、miR-4463がhsa-miR-4463であり、miR-3185がhsa-miR-3185であり、miR-6870-5pがhsa-miR-6870-5pであり、miR-6779-5pがhsa-miR-6779-5pであり、miR-1273g-3pがhsa-miR-1273g-3pであり、miR-8059がhsa-miR-8059であり、miR-4697-5pがhsa-miR-4697-5pであり、miR-4674がhsa-miR-4674であり、miR-4433-3pがhsa-miR-4433-3pであり、miR-4257がhsa-miR-4257であり、miR-1915-5pがhsa-miR-1915-5pであり、miR-4417がhsa-miR-4417であり、miR-1343-5pがhsa-miR-1343-5pであり、miR-6781-5pがhsa-miR-6781-5pであり、miR-4695-5pがhsa-miR-4695-5pであり、miR-1237-5pがhsa-miR-1237-5pであり、miR-6775-5pがhsa-miR-6775-5pであり、miR-7845-5pがhsa-miR-7845-5pであり、miR-4746-3pがhsa-miR-4746-3pであり、miR-7641がhsa-miR-7641であり、miR-7847-3pがhsa-miR-7847-3pであり、miR-6806-5pがhsa-miR-6806-5pであり、miR-4467がhsa-miR-4467であり、miR-4726-5pがhsa-miR-4726-5pであり、miR-4648がhsa-miR-4648であり、miR-6089がhsa-miR-6089であり、miR-1260bがhsa-miR-1260bであり、miR-4532がhsa-miR-4532であり、miR-5195-3pがhsa-miR-5195-3pであり、miR-3188がhsa-miR-3188であり、miR-6848-5pがhsa-miR-6848-5pであり、miR-1233-5pがhsa-miR-1233-5pであり、miR-6717-5pがhsa-miR-6717-5pであり、miR-3195がhsa-miR-3195であり、miR-6757-5pがhsa-miR-6757-5pであり、miR-8072がhsa-miR-8072であり、miR-4745-5pがhsa-miR-4745-5pであり、miR-6511a-5pがhsa-miR-6511a-5pであり、miR-6776-5pがhsa-miR-6776-5pであり、miR-371a-5pがhsa-miR-371a-5pであり、miR-1227-5pがhsa-miR-1227-5pであり、miR-7150がhsa-miR-7150であり、miR-1915-3pがhsa-miR-1915-3p、miR-187-5pがhsa-miR-187-5pであり、miR-614がhsa-miR-614であり、miR-1225-5pがhsa-miR-1225-5pであり、miR-451aがhsa-miR-451aであり、miR-939-5pがhsa-miR-939-5pであり、miR-223-3pがhsa-miR-223-3pであり、miR-125a-3pがhsa-miR-125a-3pであり、miR-92b-5pがhsa-miR-92b-5pであり、miR-22-3pがhsa-miR-22-3pであり、miR-6073がhsa-miR-6073であり、miR-6845-5pがhsa-miR-6845-5pであり、miR-6769b-5pがhsa-miR-6769b-5pであり、miR-4665-3pがhsa-miR-4665-3pであり、miR-1913がhsa-miR-1913であり、miR-1228-3pがhsa-miR-1228-3pであり、miR-940がhsa-miR-940であり、miR-296-3pがhsa-miR-296-3pであり、miR-4690-5pがhsa-miR-4690-5pであり、miR-548qがhsa-miR-548qであり、miR-663aがhsa-miR-663aであり、miR-1249がhsa-miR-1249であり、miR-1202がhsa-miR-1202であり、miR-7113-3pがhsa-miR-7113-3pであり、miR-1225-3pがhsa-miR-1225-3pであり、miR-4783-3pがhsa-miR-4783-3pであり、miR-4448がhsa-miR-4448であり、及び、miR-4534がhsa-miR-4534である、請求項11に記載のデバイス。
- 前記核酸が、下記の(a)~(e)に示すポリヌクレオチド:
(a)配列番号1~125、127~130、132~134、及び、561~578のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(b)配列番号1~125、127~130、132~134、及び、561~578のいずれかで表される塩基配列を含むポリヌクレオチド、
(c)配列番号1~125、127~130、132~134、及び、561~578のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(d)配列番号1~125、127~130、132~134、及び、561~578のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列を含むポリヌクレオチド、及び
(e)前記(a)~(d)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択されるポリヌクレオチドである、請求項11又は12に記載のデバイス。 - 前記デバイスが、別の肺がんマーカーである、miR-19b-3p、miR-1228-5p及びmiR-1307-3pからなる群から選択される少なくとも1つ以上のポリヌクレオチドと特異的に結合可能な核酸をさらに含む、請求項11~13のいずれか1項に記載のデバイス。
- miR-19b-3pがhsa-miR-19b-3pであり、miR-1228-5pがhsa-miR-1228-5pであり、及び、miR-1307-3pがhsa-miR-1307-3pである、請求項14に記載のデバイス。
- 前記核酸が、下記の(f)~(j)に示すポリヌクレオチド:
(f)配列番号126、131及び579のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(g)配列番号126、131及び579のいずれかで表される塩基配列を含むポリヌクレオチド、
(h)配列番号126、131及び579のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(i)配列番号126、131及び579のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列を含むポリヌクレオチド、及び
(j)前記(f)~(i)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択されるポリヌクレオチドである、請求項14又は15に記載のデバイス。 - 前記デバイスが、別の肺がんマーカーである、miR-4271、miR-642b-3p、miR-6075、miR-6125、miR-887-3p、miR-6851-5p、miR-6763-5p、miR-3928-3p、miR-4443、miR-3648、miR-149-3p、miR-4689、miR-4763-3p、miR-6729-5p、miR-3196、miR-8069、miR-1268a、miR-4739、miR-1268b、miR-5698、miR-6752-5p、miR-4507、miR-564、miR-4497、miR-6877-5p、miR-6087、miR-4731-5p、miR-615-5p、miR-760、miR-6891-5p、miR-6887-5p、miR-4525、miR-1914-3p、miR-619-5p、miR-5001-5p、miR-6722-3p、miR-3621、miR-4298、miR-675-5p及びmiR-4655-5pからなる群から選択される少なくとも1つ以上のポリヌクレオチドと特異的に結合可能な核酸をさらに含む、請求項11~16のいずれか1項に記載のデバイス。
- miR-4271がhsa-miR-4271であり、miR-642b-3pがhsa-miR-642b-3pであり、miR-6075がhsa-miR-6075であり、miR-6125がhsa-miR-6125であり、miR-887-3pがhsa-miR-887-3pであり、miR-6851-5pがhsa-miR-6851-5pであり、miR-6763-5pがhsa-miR-6763-5pであり、miR-3928-3pがhsa-miR-3928-3pであり、miR-4443がhsa-miR-4443であり、miR-3648がhsa-miR-3648であり、miR-149-3pがhsa-miR-149-3pであり、miR-4689がhsa-miR-4689であり、miR-4763-3pがhsa-miR-4763-3pであり、miR-6729-5pがhsa-miR-6729-5pであり、miR-3196がhsa-miR-3196であり、miR-8069がhsa-miR-8069であり、miR-1268aがhsa-miR-1268aであり、miR-4739がhsa-miR-4739であり、miR-1268bがhsa-miR-1268bであり、miR-5698がhsa-miR-5698であり、miR-6752-5pがhsa-miR-6752-5pであり、miR-4507がhsa-miR-4507であり、miR-564がhsa-miR-564であり、miR-4497がhsa-miR-4497であり、miR-6877-5pがhsa-miR-6877-5pであり、miR-6087がhsa-miR-6087であり、miR-4731-5pがhsa-miR-4731-5pであり、miR-615-5pがhsa-miR-615-5pであり、miR-760がhsa-miR-760であり、miR-6891-5pがhsa-miR-6891-5pであり、miR-6887-5pがhsa-miR-6887-5pであり、miR-4525がhsa-miR-4525であり、miR-1914-3pがhsa-miR-1914-3pであり、miR-619-5pがhsa-miR-619-5pであり、miR-5001-5pがhsa-miR-5001-5pであり、miR-6722-3pがhsa-miR-6722-3pであり、miR-3621がhsa-miR-3621であり、miR-4298がhsa-miR-4298であり、miR-675-5pがhsa-miR-675-5pであり、及び、miR-4655-5pがhsa-miR-4655-5pである、請求項17に記載のデバイス。
- 前記核酸が、下記の(k)~(o)に示すポリヌクレオチド:
(k)配列番号135~174のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(l)配列番号135~174のいずれかで表される塩基配列を含むポリヌクレオチド、(m)配列番号135~174のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列からなるポリヌクレオチド、その変異体、その誘導体、又は15以上の連続した塩基を含むその断片、
(n)配列番号135~174のいずれかで表される塩基配列もしくは当該塩基配列においてuがtである塩基配列に相補的な塩基配列を含むポリヌクレオチド、及び
(o)前記(k)~(n)のいずれかのポリヌクレオチドとストリンジェントな条件でハイブリダイズするポリヌクレオチド、
からなる群から選択されるポリヌクレオチドである、請求項17又は18に記載のデバイス。 - 前記デバイスが、ハイブリダイゼーション技術による測定のためのデバイスである、請求項11~19のいずれか1項に記載のデバイス。
- 前記ハイブリダイゼーション技術が、核酸アレイ技術である、請求項20に記載のデバイス。
- 前記デバイスが、請求項11又は12に記載のすべての肺がんマーカーから選択される少なくとも2つ以上のポリヌクレオチドのそれぞれと特異的に結合可能な少なくとも2つ以上の核酸を含む、請求項11~21のいずれか1項に記載のデバイス。
- 請求項1~10のいずれか1項に記載のキット又は請求項11~22のいずれか1項に記載のデバイスを用いて、被験体の検体における標的核酸の発現量を測定し、該測定された発現量と、同様に測定された健常体の対照発現量とを用いて被験体が肺がんに罹患していること、又は肺がんに罹患していないことをin vitroで評価することを含む、肺がんの検出方法。
- 前記被験体が、ヒトである、請求項23に記載の方法。
- 前記検体が、血液、血清又は血漿である、請求項23又は24に記載の方法。
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EP3159416A1 (en) | 2017-04-26 |
US10620228B2 (en) | 2020-04-14 |
KR102511402B1 (ko) | 2023-03-17 |
KR102401227B1 (ko) | 2022-05-24 |
US12117462B2 (en) | 2024-10-15 |
KR20230038819A (ko) | 2023-03-21 |
EP3159416A4 (en) | 2018-04-18 |
JP6991433B2 (ja) | 2022-01-12 |
KR20170018409A (ko) | 2017-02-17 |
JP2022009328A (ja) | 2022-01-14 |
US20170130278A1 (en) | 2017-05-11 |
US20230251281A1 (en) | 2023-08-10 |
CN106471132B (zh) | 2020-09-22 |
KR20230136701A (ko) | 2023-09-26 |
US20200182897A1 (en) | 2020-06-11 |
CN111926080B (zh) | 2024-07-12 |
BR112016029589A2 (pt) | 2017-10-24 |
CN106471132A (zh) | 2017-03-01 |
JPWO2015194610A1 (ja) | 2017-04-20 |
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