US20110117087A1 - Method for the production of a glycosylated immunoglobulin - Google Patents

Method for the production of a glycosylated immunoglobulin Download PDF

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Publication number
US20110117087A1
US20110117087A1 US12/911,300 US91130010A US2011117087A1 US 20110117087 A1 US20110117087 A1 US 20110117087A1 US 91130010 A US91130010 A US 91130010A US 2011117087 A1 US2011117087 A1 US 2011117087A1
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immunoglobulin
cells
cell
glucose
amount
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Reinhard Franze
Thomas Link
Shinya Takuma
Yoshinori Takagi
Chikashi Hirashima
Yuriko Tsuda
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Chugai Pharmaceutical Co Ltd
Hoffmann La Roche Inc
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Chugai Pharmaceutical Co Ltd
Hoffmann La Roche Inc
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Assigned to HOFFMANN-LA ROCHE INC. reassignment HOFFMANN-LA ROCHE INC. ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: F. HOFFMANN-LA ROCHE AG
Assigned to F. HOFFMANN-LA ROCHE AG reassignment F. HOFFMANN-LA ROCHE AG ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: HIRASHIMA, CHIKASHI, TAKAGI, YOSHINORI, TAKUMA, SHINYA, TSUDA, YURIKO, FRANZE, REINHARD, LINK, THOMAS
Publication of US20110117087A1 publication Critical patent/US20110117087A1/en
Priority to US14/844,570 priority Critical patent/US10501769B2/en
Assigned to F. HOFFMANN-LA ROCHE AG reassignment F. HOFFMANN-LA ROCHE AG CORRECTIVE ASSIGNMENT TO CORRECT THE REMOVAL OF INVENTORS PREVIOUSLY RECORDED AT REEL: 025729 FRAME: 0525. ASSIGNOR(S) HEREBY CONFIRMS THE ASSIGNMENT. Assignors: FRANZE, REINHARD, LINK, THOMAS
Assigned to CHUGAI SEIYAKU KABUSHIKI KAISHA reassignment CHUGAI SEIYAKU KABUSHIKI KAISHA ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: HIRASHIMA, CHIKASHI, TAKAGI, YOSHINORI, TAKUMA, SHINYA, TSUDA, YURIKO
Priority to US16/682,401 priority patent/US20200080125A1/en
Priority to US16/790,177 priority patent/US11021728B2/en
Priority to US17/243,309 priority patent/US11136610B2/en
Priority to US17/407,758 priority patent/US11377678B2/en
Priority to US17/752,074 priority patent/US20220282298A1/en
Priority to US17/881,156 priority patent/US20220380827A1/en
Abandoned legal-status Critical Current

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    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P43/00—Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P21/00—Preparation of peptides or proteins
    • C12P21/005—Glycopeptides, glycoproteins
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
    • C07K16/28—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00—Medicinal preparations containing antigens or antibodies
    • A61K39/395—Antibodies; Immunoglobulins; Immune serum, e.g. antilymphocytic serum
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
    • C07K16/28—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
    • C07K16/2866—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against receptors for cytokines, lymphokines, interferons
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K2317/00—Immunoglobulins specific features
    • C07K2317/10—Immunoglobulins specific features characterized by their source of isolation or production
    • C07K2317/14—Specific host cells or culture conditions, e.g. components, pH or temperature
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K2317/00—Immunoglobulins specific features
    • C07K2317/20—Immunoglobulins specific features characterized by taxonomic origin
    • C07K2317/24—Immunoglobulins specific features characterized by taxonomic origin containing regions, domains or residues from different species, e.g. chimeric, humanized or veneered
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K2317/00—Immunoglobulins specific features
    • C07K2317/40—Immunoglobulins specific features characterized by post-translational modification
    • C07K2317/41—Glycosylation, sialylation, or fucosylation
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K2317/00—Immunoglobulins specific features
    • C07K2317/70—Immunoglobulins specific features characterized by effect upon binding to a cell or to an antigen
    • C07K2317/76—Antagonist effect on antigen, e.g. neutralization or inhibition of binding

Definitions

  • immunoglobulins In recent years the production of immunoglobulins has steadily increased and it is likely that immunoglobulins will become the biggest group of therapeutics available for the treatment of various diseases in the near future.
  • the impact of immunoglobulins emerges from their specificity, which comprises their specific target recognition and binding function as well as the activation of specific effects concurrently with or after antigen/Fe-receptor binding.
  • the specific target recognition and binding is mediated by the variable region of the immunoglobulin.
  • Other parts of the immunoglobulin molecule, from which effects originate, are posttranslational modifications, such as the glycosylation pattern.
  • the posttranslational modifications do have an influence on the efficacy, stability, immunogenic potential, binding etc. of an immunoglobulin.
  • complement-dependent cytotoxicity (CDC) antibody-dependent cellular cytotoxicity (ADCC) and induction of apoptosis have to be addressed.
  • Immunoglobulins produced by mammalian cells contain 2-3% by mass carbohydrates (Taniguchi, T., et al., Biochem. 24 (1985) 5551-5557). This is equivalent e.g. in an immunoglobulin of class G (IgG) to 2.3 oligosaccharide residues in an IgG of mouse origin (Mizuochi, T., et al., Arch. Biochem. Biophys.
  • oligosaccharide residues can be introduced via N-glycosylation at amino acid residue 297, which is an asparagine residue (denoted as Asn 297 ).
  • Youings et al. have shown that a further N-glycosylation site exists in 15% to 20% of polyclonal IgG molecules in the Fab-region (Youings, A., et al., Biochem. J., 314 (1996) 621-630; see e.g. also Endo, T., et al., Mol. Immunol. 32 (1995) 931-940). Due to inhomogeneous, i.e.
  • an immunoglobulin is directly linked to the glycosylation of the Fc-region (see e.g. Dwek, R. A., et al., J. Anat. 187 (1995) 279-292; Lund, J., et al., J. Immunol. 157 (1996) 4963-4969; Lund, J., FASEB J. 9 (1995) 115-119; Wright, A. and Morrison, S. L., J. Immunol. 160 (1998) 3393-3402), such as for example thermal stability and solubility (West, C. M., Mol. Cell. Biochem. 72 (1986) 3-20), antigenicity (Turco, S. J., Arch. Biochem. Biophys.
  • Factors influencing the glycosylation pattern have been investigated, such as for example presence of fetal calf serum in the fermentation medium (Gawlitzek, M., et al., J. Biotechnol. 42(2) (1995) 117-131), buffering conditions (Mülthing, J., et al., Biotechnol. Bioeng. 83 (2003) 321-334), dissolved oxygen concentration (Saba, J. A., et al., Anal. Biochem. 305 (2002) 16-31; Kunkel, J. P., et al., J. Biotechnol. 62 (1998) 55-71; Lin, A. A., et al., Biotechnol. Bioeng.
  • the amount of the mannose-5 glycostructure in the glycosylation pattern of a polypeptide produced by a eukaryotic cell can be modified based on the amount of glucose provided to the cell in the cultivation process.
  • reducing the amount of glucose available e.g. by changing the DGL value from 1.0 to smaller values of e.g. 0.8, 0.6, 0.5, 0.4, or 0.2
  • a modification in the mannose-5 glycostructure amount in the glycosylation pattern can be obtained.
  • the DGL value or respectively the amount of glucose available per time unit has to be kept constant and at a defined reduced value per time unit.
  • a first aspect as reported herein is a method for the production of a polypeptide, in one embodiment of an immunoglobulin, in a eukaryotic cell, comprising the following steps
  • the DGL is kept constant in the range from 0.8 to 0.2. In a further embodiment the DGL is kept constant in the range from 0.6 to 0.4. In another embodiment the fraction of the polypeptide with a mannose-5 glycostructure is 8% or less of the sum comprising the polypeptide with a mannose-5 glycostructure, the polypeptide G(0) isoform, the polypeptide G(1) isoform, and the polypeptide G(2) isoform. In still another embodiment the polypeptide is an immunoglobulin, in one embodiment an immunoglobulin of class G or E.
  • Another aspect as reported herein is a method for the production of an immunoglobulin comprising the following steps:
  • the amount of glucose available in the cultivation medium per time unit is kept constant and limited to a value in the range from 80% to 20%. In a further embodiment the range is from 60% to 40%. In another embodiment the cells in the cultivation medium are the viable cells in the cultivation medium.
  • the eukaryotic cell is selected from CHO cells, NS0 cells, HEK cells, BHK cells, hybridoma cells, PER.C6® cells, insect cells, or Sp2/0 cells.
  • the eukaryotic cell is a Chinese Hamster Ovary (CHO) cell.
  • the cultivating is at a pH value in the range from about pH 7.0 to about pH 7.2.
  • the cultivating is a continuous or a fed-batch cultivating.
  • the methods may comprise in another embodiment a final step of purifying the polypeptide.
  • the cell is cultivated for six to twenty days or for six to fifteen days. In a further embodiment the cell is cultivated for six to eight days.
  • compositions comprising an immunoglobulin, wherein the composition has been prepared with a method as reported herein.
  • the immunoglobulin is an anti-IL-6R antibody.
  • the anti-IL-6R antibody comprises Tocilizumab.
  • the mannose-5 glycostructure attached to the anti-IL-6R antibody is 8% or less.
  • the mannose-5 glycostructure is 6% or less.
  • the mannose-5 glycostructure is 4% or less.
  • the invention also concerns a composition
  • a composition comprising an antibody that binds human interleukin 6 receptor (anti-IL-6R antibody) with oligosaccharide attached thereto, wherein mannose-5 glycostructure (M5) content in the composition is 8% or less, e.g. less than 5%, for example, 4% or less.
  • anti-IL-6R antibody is Tocilizumab and/or has been produced by a recombinant Chinese Hamster Ovary (CHO) cell.
  • FIGS. 1A and 1B Viable cell density ( FIG. 1A ) and cell viability profiles ( FIG. 1B ) in the fed-batch mode using the DGL control; open circle: initial cell density of 8 ⁇ 10 5 cells/ml; filled triangle: initial cell density of 10 ⁇ 10 5 cells/ml; open square: initial cell density of 12 ⁇ 10 5 cells/ml.
  • FIG. 2 Time courses of DGL in the fed-batch mode in immunoglobulin production; circle: initial cell density of 8 ⁇ 10 5 cells/ml; triangle: initial cell density of 10 ⁇ 10 5 cells/ml; square: initial cell density of 12 ⁇ 10 5 cells/ml.
  • FIG. 3 Feeding profiles based on DGL by the fed-batch mode in immunoglobulin production; circles: initial cell density of 8 ⁇ 10 5 cells/ml; triangle: initial cell density of 10 ⁇ 10 5 cells/ml; square: initial cell density of 12 ⁇ 10 5 cells/ml.
  • FIG. 5 Time curse of DGL during a fed-batch cultivation of a cell: diamond: single feed daily feeding, square: dual feed daily feeding; triangle: single feed profile feeding; X: dual feed profile feeding.
  • an immunoglobulin can be obtained wherein the amount of the immunoglobulin with a mannose-5 glycostructure depends on the adjusted DGL value, and wherein the amount is the fraction of the sum of the amount of the immunoglobulin with a mannose-5 glycostructure, and of the immunoglobulin G(0) isoform, and of the immunoglobulin G(1) isoform, and of the immunoglobulin G(2) isoform.
  • the DGL is from 0.8 to 0.2.
  • the fraction is 10% or less.
  • the DGL is from 0.6 to 0.4.
  • the fraction is 6% or less.
  • an immunoglobulin can be obtained wherein the fraction of the immunoglobulin having a mannose-5 glycostructure is 10% or less of the sum comprising the amount of the immunoglobulin with a mannose-5 glycostructure, the amount of the immunoglobulin G(0) isoform, the amount of the immunoglobulin G(1) isoform, and the amount of the immunoglobulin G(2) isoform.
  • the fraction is the area-% fraction determined in a liquid chromatography method.
  • the DGL is maintained in the range from 0.8 to 0.2.
  • the DGL is maintained in the range from 0.6 to 0.2.
  • the DGL is maintained in the range from 0.6 to 0.4.
  • the amount of glucose that can maximally be utilized by the cell per time unit is the average amount of glucose that is utilized in a cultivation in which all compounds are available in excess, i.e. no compound is limiting the growth of the cell, determined based on at least five cultivations. In one embodiment the fraction is determined on day seven of the cultivation.
  • nucleic acid denotes a naturally occurring or partially or fully non-naturally occurring nucleic acid molecule encoding a polypeptide.
  • the nucleic acid can be build up of DNA-fragments which are either isolated or synthesized by chemical means.
  • the nucleic acid can be integrated into another nucleic acid, e.g. in an expression plasmid or the genome/chromosome of a eukaryotic cell.
  • plasmid includes shuttle and expression plasmids.
  • the plasmid will also comprise a prokaryotic propagation unit comprising an origin of replication (e.g. the ColE1 origin of replication) and a selectable marker (e.g.
  • a nucleic acid is characterized by its nucleic acid sequence consisting of individual nucleotides and likewise by the amino acid sequence of a polypeptide encoded thereby.
  • expression cassette denotes a nucleic acid that contains the elements necessary for expression and optionally for secretion of at least the contained structural gene in/from a cell, such as a promoter, polyadenylation site, and 3′- and 5′-untranslated regions.
  • gene denotes e.g. a segment on a chromosome or on a plasmid, which is necessary for the expression of a polypeptide. Beside the coding region a gene comprises other functional elements including a promoter, introns, and one or more transcription terminators.
  • a “structural gene” denotes the coding region of a gene without a signal sequence.
  • the term “expression” denotes the transcription and translation of a structural gene within a cell.
  • the level of transcription of a structural gene in a cell can be determined on the basis of the amount of corresponding mRNA that is present in the cell.
  • mRNA transcribed from a selected nucleic acid can be quantitated by PCR or by Northern hybridization (see e.g. Sambrook et al. (supra)).
  • a polypeptide encoded by a nucleic acid can be quantitated by various methods, e.g.
  • cell denotes a cell into which a nucleic acid encoding a polypeptide, in one embodiment a heterologous polypeptide, has been introduced.
  • the term “cell” includes both prokaryotic cells used for propagation of plasmids/vectors as well as eukaryotic cells used for expression of the structural gene.
  • a eukaryotic cell for the expression of an immunoglobulin is a mammalian cell.
  • the mammalian cell is selected from CHO cells, NS0 cells, Sp2/0 cells, COS cells, HEK cells, BHK cells, PER.C6® cells, and hybridoma cells.
  • a eukaryotic cell can be selected in addition from insect cells, such as caterpillar cells ( Spodoptera frugiperda , sf cells), fruit fly cells ( Drosophila melanogaster ), mosquito cells ( Aedes aegypti, Aedes albopictus ), and silkworm cells ( Bombyx mori ), and the like.
  • insect cells such as caterpillar cells ( Spodoptera frugiperda , sf cells), fruit fly cells ( Drosophila melanogaster ), mosquito cells ( Aedes aegypti, Aedes albopictus ), and silkworm cells ( Bombyx mori ), and the like.
  • polypeptide denotes a polymer of amino acid residues joined by peptide bonds, whether produced naturally or synthetically. Polypeptides of less than about 20 amino acid residues may be referred to as “peptides”. Polypeptides of more than 100 amino acid residues or covalent and non-covalent aggregates comprising more than one polypeptide may be referred to as “proteins”. Polypeptides may comprise non-amino acid components, such as carbohydrate groups. The non-amino acid components may be added to the polypeptide by the cell in which the polypeptide is produced, and may vary with the type of cell. Polypeptides are defined herein in terms of their amino acid sequence in N- to C-terminal direction. Additions thereto, such as carbohydrate groups, are generally not specified, but may be present nonetheless.
  • heterologous DNA denotes a DNA molecule or a polypeptide, or a population of DNA molecules or a population of polypeptides, which do not exist naturally within a given cell.
  • DNA molecules heterologous to a particular cell may contain DNA derived from the cell's species (i.e. endogenous DNA) so long as that DNA is combined with non-host DNA (i.e. exogenous DNA).
  • a DNA molecule containing a non-cell's DNA segment e.g. encoding a polypeptide, operably linked to a cell's DNA segment, e.g. comprising a promoter
  • a heterologous DNA molecule can comprise an endogenous structural gene operably linked to an exogenous promoter.
  • a polypeptide encoded by a heterologous DNA molecule is a “heterologous” polypeptide.
  • an expression plasmid denotes a nucleic acid comprising at least one structural gene encoding a polypeptide to be expressed.
  • an expression plasmid comprises a prokaryotic plasmid propagation unit, including an origin of replication and a selection marker, e.g. for E. coli , an eukaryotic selection marker, and one or more expression cassettes for the expression of the structural gene(s) of interest each in turn comprising a promoter, at least one structural gene, and a transcription terminator including a polyadenylation signal.
  • Gene expression is usually placed under the control of a promoter, and such a structural gene is to be “operably linked to” the promoter.
  • a regulatory element and a core promoter are operably linked if the regulatory element modulates the activity of the core promoter.
  • isolated polypeptide denotes a polypeptide that is essentially free from associated cellular components, such as carbohydrate, lipid, or other proteinaceous or non-proteinaceous impurities, which are not covalently associated with the polypeptide.
  • a preparation of an isolated polypeptide contains in certain embodiments the polypeptide in a highly purified form, i.e. at least about 80% pure, at least about 90% pure, at least about 95% pure, greater than 95% pure, or greater than 99% pure.
  • isolated polypeptide does not exclude the presence of the same polypeptide in alternative physical forms, such as dimers, or alternatively glycosylated or derivatized forms.
  • Immunoglobulins in general are assigned into five different classes: IgA (immunoglobulin of class A), IgD, IgE, IgG and IgM. Between these classes the immunoglobulins differ in their overall structure and/or amino acid sequence but have the same building blocks.
  • Complete immunoglobulins are built up of two pairs of polypeptide chains, each comprising an immunoglobulin light polypeptide chain (short: light chain) and an immunoglobulin heavy polypeptide chain (short: heavy chain). In turn the chains comprise a variable region and a constant region.
  • both regions consist of one domain
  • the variable region consists of one domain and the constant region comprises up to five domains (in N- to C-terminal direction): the C H 1-domain, optionally the hinge region domain, the C H 2-domain, the C H 3-domain, and optionally the C H 4-domain.
  • An immunoglobulin can be dissected in a Fab- and an Fc-region.
  • the entire light chain, the heavy chain variable domain and the C H 1 domain are referred to as Fab-region (fragment antigen binding-region).
  • the Fc-region comprises the C H 2-, C H 3-, and optionally the C H 4-domain.
  • immunoglobulin denotes a protein consisting of one or more polypeptides.
  • the encoding immunoglobulin genes include the different constant region genes as well as the myriad immunoglobulin variable region genes.
  • immunoglobulin comprise in one embodiment monoclonal antibodies and fragments thereof, such as an isolated heavy chain, or a heavy chain constant region, as well as fusion polypeptides comprising at least an immunoglobulin heavy chain C H 2-domain.
  • the immunoglobulin is a complete immunoglobulin, in another embodiment the immunoglobulin is an Fc-region of a complete immunoglobulin. In another embodiment the immunoglobulin is an immunoglobulin, or an immunoglobulin fragment, or an immunoglobulin conjugate.
  • immunoglobulin fragment denotes a polypeptide comprising at least the C H 2-domain of an immunoglobulin delta, epsilon, or alpha heavy chain, and/or the C H 3-domain of an immunoglobulin epsilon or delta heavy chain. Encompassed are also derivatives and variants thereof wherein the N-glycosylation motif Asn-Xaa-Ser/Thr in the C H 2- or C H 3-domain is not changed.
  • immunoglobulin conjugate denotes a polypeptide comprising at least the C H 2-domain of an immunoglobulin delta, epsilon, or alpha heavy chain, and/or the C H 3-domain of an immunoglobulin epsilon or delta heavy chain fused to a non-immunoglobulin polypeptide. Therein the N-glycosylation motif Asn-Xaa-Ser/Thr in the C H 2- or C H 3-domain is not changed.
  • the oligosaccharides attached to Asn 297 (IgG, IgE) or Asn 263 (IgA) of a C H 2-domain and/or to Asn 394 , Asn 345 , or Asn 496 (IgE, IgD) of a C H 3-domain of an immunoglobulin heavy chain have a biantennary structure (Mizuochi, T., et al., Arch. Biochem. Biophys. 257 (1987) 387-394), i.e. they consist of a core structure of
  • immunoglobulin class residue to which a glycostructure can be attached IgG Asn 297 IgE Asn 255, Asn 297, Asn 361, Asn 371, Asn 394 IgA Asn 263, Asn 459 IgD Asn 445, Asn 496 IgM Asn 395
  • the amount of the immunoglobulin G(0) isoform, the amount of the immunoglobulin G(1) isoform, and the amount of the immunoglobulin G(2) isoform denotes the sum of the amounts of the different, heterogeneous, biantennary oligosaccharides N-linked to an asparagine (Asn) of an immunoglobulin.
  • the G(2) isoform has a terminal galactose residue on each of the outer-arms of the oligosaccharide structure, the G(1) isoform bears only a galactose residue on either the ( ⁇ 1-6) or ( ⁇ 1-3) linked outer-arm, and the G(0) isoform bears no galactose residue on both outer-arms.
  • mannose-5 glycostructure denotes an oligomannose-structure linked to an Asn residue of a polypeptide comprising or consisting of five mannose residues and two N-acetyl glucose core residues, forming a triantennary structure.
  • One aspect as reported herein is a method for the production of an immunoglobulin comprising the following steps:
  • an immunoglobulin comprising at most 10% of an immunoglobulin with a mannose-5 glycostructure.
  • the 10% are calculated based on the sum of the amount of the immunoglobulin with a mannose-5 glycostructure, the amount of the immunoglobulin G(0) isoform, the amount of the immunoglobulin G(1) isoform, and the amount of the immunoglobulin G(2) isoform.
  • degree of glucose limitation and its abbreviation “DGL”, which can be used interchangeably herein, denote the ratio of the current specific glucose consumption rate of a single cell in a cultivation to the maximum known specific glucose consumption rate of the single cell or a single cell of the same kind.
  • degree of glucose limitation is defined as
  • the DGL can vary between DGL maintenance and 1 whereby DGL maintenance ( ⁇ 1 and >0) denotes complete growth limitation and 1 denotes no limitation or complete glucose excess.
  • glycosylation pattern comprising differently glycosylated forms of the same polypeptide, i.e. with the same amino acid sequence.
  • glycosylation pattern comprising e.g. polypeptides with completely missing glycostructures, differently processed glycostructures, and/or differently composed glycostructures.
  • Mannose-5 glycostructure also denoted as high-mannose, Man5, M5, or oligo-mannose. It has been reported, that the fraction of recombinantly produced polypeptides with the mannose-5 glycostructure is increased with prolonged cultivation time or under glucose starvation conditions (Robinson, D. K., et al., Biotechnol. Bioeng. 44 (1994) 727-735; Elbein, A. D., Ann. Rev. Biochem. 56 (1987) 497-534).
  • the amount of the mannose-5 glycostructure in the glycosylation pattern of a polypeptide produced by a eukaryotic cell can be modified based on the amount of glucose provided to the cell in the cultivation process. It has been found that by reducing the amount of glucose, i.e. by changing the DGL value from 1.0 to smaller values of e.g. 0.8, 0.6, 0.5, 0.4, or 0.2, a modification in the mannose-5 glycostructure amount in the glycosylation pattern can be achieved. In one embodiment the DGL value is kept constant at a value within a range, such as from 0.8 to 0.2, or from 0.6 to 0.4.
  • the production of a polypeptide in one embodiment of an immunoglobulin, can be performed under conditions wherein a restricted amount of glucose is available to the cultivated cell in order to obtain the polypeptide with a defined amount of the mannose-5 glycostructure in the glycosylation pattern. It has been found that a cultivation with an amount of glucose available per time unit of 80% or less of the amount of glucose that can maximally be utilized by the cells per time unit, in one embodiment by exponentially growing cells, i.e with a DGL of 0.8 or less, yields a polypeptide with a glycosylation pattern in which the amount of the mannose-5 glycostructure is changed compared to a cultivation with a DGL of 1.0. In one embodiment the cell density is the viable cell density. Additionally the obtained polypeptide yield is increased.
  • the amount of glucose that can maximally be utilized by the cell per time unit denotes the amount of glucose that is maximally consumed or utilized or metabolized per time unit by a single cell under optimum growth conditions in the exponential growth phase in a cultivation without any nutrient limitation.
  • the amount of glucose that can maximally be utilized by the cell per time unit can be determined by determining the amount of glucose that is metabolized per time unit by a cell under optimum growth conditions in the exponential growth phase in a cultivation without any nutrient limitation.
  • a further increase of the available amount of glucose will not further increase, i.e. change, the amount of glucose that can maximally be utilized by the cell per time unit.
  • This amount defines the maximum level of glucose consumption of a single cell. This does not denote that a genetically modified version of the cell might not have an even higher maximum level of glucose consumption.
  • the amount of glucose that can be maximally be utilized by the cell per time unit can be determined based on previous cultivations and the monitored data.
  • cultivated cells grow and consume nutrients at maximum rates in an uneconomic manner.
  • One of the consumed culture medium nutrients is glucose, which is metabolized by the cultivated cells in order to produce energy and building blocks for the cell's metabolism.
  • glucose which is metabolized by the cultivated cells in order to produce energy and building blocks for the cell's metabolism.
  • the cell's metabolism is running at the maximum turnover rate for glucose.
  • the amount of glucose that can maximally be utilized by the cell per time unit can for example be determined from the glucose consumption of exponentially growing cells in the presence of excess glucose cultivated with or under the same cultivation conditions that will also be used in the cultivation with restricted glucose, i.e. with an amount of glucose available per time unit that is smaller than that which can be utilized by the cell.
  • This maximum amount can be calculated easily by determining the cell density and glucose concentration at the beginning and end of a fixed time range.
  • the value is normally in a range from 0.006 to 190 mmol/hour/10 9 cells (Baker, K. N., et al., Biotechnol. Bioeng. 73 (2001) 188-202; WO 98/41611; Müthing, J., et al., Biotechnol. Bioeng. 83 (2003) 321-334; WO 2004/048556).
  • the qGlc max is about 0.142 mmol/hour/10 9 cells under standard process conditions at pH 7.0.
  • the method as reported herein is performed in one embodiment under conditions wherein the amount of glucose available per time unit is kept constant and at 80% or less of the amount of glucose that can maximally be utilized by the cell per time unit (0.8 ⁇ DGL>0), in one embodiment the amount of glucose available is kept constant and at 60% or less (0.6 ⁇ DGL>0), in another embodiment at 50% or less (0.5 ⁇ DGL>0), and in still another embodiment at about 40%.
  • the cultivating is with an amount of glucose available per time unit that is kept constant in a range between 80% and 10% of the amount of glucose that can maximally be utilized by the cell per time unit (0.8 ⁇ DGL>0.1).
  • the amount of glucose available is kept constant in a range between 60% and 10% (0.6 ⁇ DGL>0.1). In a further embodiment the amount of glucose available is kept constant in a range between 50% and 10% (0.5 ⁇ DGL>0.1). In another embodiment the amount of glucose available is kept constant in a range between 45% and 20% (0.45 ⁇ DGL>0.2). In also an embodiment the amount of glucose available is kept between 80% and 60% (0.8 ⁇ DGL>0.6).
  • the method comprises the step of cultivating the cell under conditions wherein the DGL is kept constant and at a value of about 0.4, whereby the cultivating comprises starting with a DGL between 1.0 and 0.5, lowering the DGL to a value of about 0.4, and keeping the DGL constant thereafter.
  • the lowering of the DGL is within a time period of 100 hours.
  • the term “keeping the DGL constant” and grammatical equivalents thereof denote that the DGL value is maintained during a time period, i.e. the variation of the DGL value is within 10% of the value (see e.g. FIG. 2 ).
  • the immunoglobulin is recovered after production, either directly or after disintegration of the cell.
  • the recovered immunoglobulin is in one embodiment purified with a method known to a person skilled in the art. Different methods are well established and widespread used for protein purification, such as affinity chromatography with microbial proteins (e.g. protein A or protein G affinity chromatography), ion exchange chromatography (e.g. cation exchange (carboxymethyl resins), anion exchange (amino ethyl resins) and mixed-mode exchange), thiophilic adsorption (e.g. with beta-mercaptoethanol and other SH ligands), hydrophobic interaction or aromatic adsorption chromatography (e.g.
  • a purification process for immunoglobulins in general comprises a multistep chromatographic part.
  • non-immunoglobulin polypeptides are separated from the immunoglobulin fraction by an affinity chromatography, e.g. with protein A or G.
  • affinity chromatography e.g. with protein A or G.
  • ion exchange chromatography can be performed to disunite the individual immunoglobulin classes and to remove traces of protein A, which has been coeluted from the first column.
  • a chromatographic step is employed to separate immunoglobulin monomers from multimers and fragments of the same class.
  • the recovered immunoglobulin is characterized by the amount of the immunoglobulin having a mannose-5 glycostructure with respect to the amount of a population, which is the sum of the amount of the immunoglobulin with a mannose-5 glycostructure, the immunoglobulin G(0) isoform, the immunoglobulin G(1) isoform, and the immunoglobulin G(2) isoform.
  • the amount of the immunoglobulin with a mannose-5 glycostructure is in one embodiment 10% or less of the population, in another embodiment 8% or less of the population, and in a further embodiment 6% or less of the population.
  • the method as reported herein can be performed in certain embodiments as continuous cultivation, as fed-batch cultivation, or as combination thereof, e.g. starting as fed-batch cultivation with subsequent crossover to a continuous cultivation. Additionally, the method as reported herein can be performed in different ways. For example, in one embodiment prior to the cultivating under conditions with a DGL value below 1.0, i.e. for example under conditions wherein the available amount of glucose is 80% or less of the amount of glucose that can maximally be utilized by the cell in the culture per time unit, the cultivating is with an excess of glucose, i.e. a DGL value of 1.0. In another embodiment the cultivating is started with an amount of glucose as contained in standard culture media, e.g.
  • the starting of the cultivating is in the presence of an excess amount of glucose, i.e. a DGL of 1.0, and adding an amount of glucose per time unit, which is 80% or less of the amount of glucose that can maximally be utilized per time unit by the cells in the cultivation.
  • the feeding is started once the amount of glucose present in the culture medium has dropped to or below a preset value in the cultivation. In the last two cases the amount of glucose available in the culture is reduced by the metabolism of the cells in the cultivation.
  • the amount of glucose, which is available or added per time unit and which is less than the amount of glucose that can maximally be utilized is kept at the same value, i.e. constant, in the method as reported herein. For example, if an amount of 50% of the amount of glucose that can maximally be utilized per time unit is available, this amount is available in all time units of the method in which a restricted glucose feeding is performed. It has to be pointed out that this value is a relative value. Though, as the viable cell density changes during the cultivation (i.e. it increases in the beginning, reaches a maximum, and drops thereafter again) the absolute amount of available glucose changes accordingly as it is a relative value depending on the absolute viable cell density. As the relative value is kept constant (i.e. at e.g. 80%) but the absolute reference value changes (i.e. e.g. increasing viable cell density) also the relative absolute value changes (i.e. 80% of an increasing value are also increasing).
  • per time unit denotes a fixed time range, such as 1 minute, 1 hour, 6 hours, 12 hours, or 24 hours. In one embodiment the time unit is 12 hours or 24 hours.
  • amount of glucose available per time unit denotes the sum of 1) the amount of glucose contained in the cultivation medium of a cultivation at the beginning of a fixed time range and 2) the amount of glucose added, i.e. fed, during the time unit.
  • an amount of glucose is added to the cell cultivation medium, e.g. to the cultivation vessel, which increases the amount of glucose in the cultivation medium at the beginning of the fixed time range to the predetermined amount.
  • This amount of glucose can be added, e.g., as solid, dissolved in water, dissolved in a buffer, or dissolved in a nutrient medium, whereby water and buffer shall not contain glucose.
  • the amount of glucose to be added corresponds to the amount of glucose to be available reduced by the amount of glucose present in the medium in the cultivation vessel.
  • the process of adding the amount of glucose can be performed either as single addition, as multiple addition of small, equal fractions, or as continuous addition during a time unit as described above.
  • the method as reported herein is suitable for any kind of cultivation and any cultivation scale.
  • the method is used for continuous or fed-batch processes; in another embodiment the cultivation volume is from 100 ml up to 50,000 l, in another embodiment from 100 l to 10,000 l.
  • the method as reported herein is useful for the production of immunoglobulins with 10% or less, or 8% or less, or 6% or less of the immunoglobulin having a mannose-5 glycostructure.
  • the immunoglobulin is an immunoglobulin G or E.
  • the method as reported herein comprises a eukaryotic cell, wherein the cell in turn comprises a nucleic acid encoding the heavy chain of an immunoglobulin or a fragment thereof and a nucleic acid encoding the light chain of an immunoglobulin or a fragment thereof.
  • the eukaryotic cell is in one embodiment selected from CHO cells, NS0 cells, BHK cells, hybridoma cells, PER.C6® cells, Sp2/0 cells, HEK cells, and insect cells.
  • the amount of glucose that has to be available to the cells in a cultivation according to the method as reported herein is calculated by multiplying the viable cell density, which can be achieved normally in the culture vessel at a certain point of time of the cultivation, with the volume of the culture vessel and the amount of glucose that can maximally be utilized by the exponentially growing cells per time unit and by the intended DGL.
  • viable cell density which can be achieved normally in the culture vessel at a certain point of time of the cultivation
  • the volume of the culture vessel with the amount of glucose that can maximally be utilized by the exponentially growing cells per time unit and by the intended DGL.
  • the pH value of the cultivation is between pH 6.5 and pH 7.8. In another embodiment the pH value is between pH 6.9 and pH 7.3. In a further embodiment the pH value is between pH 7.0 and 7.2. It has been found as outlined in Example 1 that in combination with a restricted glucose feeding with a pH value of 7.0 in the constant feeding method the M5 content can efficiently be regulated to defined values, i.e. below 8%, compared to a pH value of 7.2. In the cultivations in the fed-batch method at pH values of 7.0 or 7.2, respectively, it was found that with the DGL control method the M5 content could be regulated to be less than 5.5%. It has been found that with a reduction of the pH value of the cultivation an increase of the M5 amount due to the lowering of the DGL value can be traversed.
  • the cultivation is in one embodiment performed at a temperature between 27° C. and 39° C., in another embodiment between 35° C. and 37.5° C.
  • any polypeptide containing a glycostructure can be produced, such as immunoglobulins, interferons, cytokines, growth factors, hormones, plasminogen activator, erythropoietin and the like.
  • the cultivating in the method as reported herein can be performed using any stirred or shaken culture devices for mammalian cell cultivation, for example, a fermenter type tank cultivation device, an air lift type cultivation device, a culture flask type cultivation device, a spinner flask type cultivation device, a microcarrier type cultivation device, a fluidized bed type cultivation device, a hollow fiber type cultivation device, a roller bottle type cultivation device, or a packed bed type cultivation device.
  • a fermenter type tank cultivation device an air lift type cultivation device, a culture flask type cultivation device, a spinner flask type cultivation device, a microcarrier type cultivation device, a fluidized bed type cultivation device, a hollow fiber type cultivation device, a roller bottle type cultivation device, or a packed bed type cultivation device.
  • the method as reported herein is performed in one embodiment for up to 15 days. In another embodiment the cultivating is for 6 to 15 days. In one embodiment the immunoglobulin is an anti-IL-6R antibody.
  • An exemplary CHO cell line in which the amount of the mannose-5 glycostructure of a recombinantly produced immunoglobulin can be modified is a CHO cell line comprising a nucleic acid encoding an anti-IL-6 receptor antibody according to EP 0 409 607 and U.S. Pat. No. 5,795,965.
  • any culture medium can be used as long a glucose supplementation according to the method of the invention can be performed.
  • Exemplary culture media are IMIDM, DMEM or Ham's F12 medium or combinations thereof, which have been adapted to the method as reported herein in as much as the mass ratios of the culture medium components to glucose are adopted. It is likewise possible to exclude glucose from the cultivation medium and add it to the cultivation separately.
  • CHO cells expressing an anti-IL-6R antibody were cultivated in a 11 or 21 fermentation vessel.
  • the feeding medium contained 15 to 40 g/l glucose.
  • Glucose could be fed with a separate concentrated solution containing of e.g. 400 g/l glucose.
  • the cultivation was performed at a pH value of in the range from pH 7.0 to pH 7.2.
  • IgG glycosylation pattern For the analysis of IgG glycosylation pattern a method according to Kondo et al. (Kondo, A., et al., Agric. Biol. Chem. 54 (1990) 2169-2170) was used.
  • the IgG was purified from the centrifuged supernatant of the cultivation medium using a small scale protein A column.
  • the oligosaccharide of the purified IgG was released using N-glycosidase F (Roche Diagnostics GmbH, Mannheim, Germany) and labeled with 2-amino pyridine at the reducing terminus.
  • the labeled oligosaccharide was analyzed by reverse-phase chromatography (HPLC). Each peak was assigned by both mass spectrometry and standards for the oligosaccharides.
  • the glucose concentration was determined using an YSI 2700 SELECTTM analyzer (YSI, Yellow Springs, Ohio, USA) with a method according to the manufacturer's manual.
  • Viable Cell density was determined using an automatic image processing and analysis system (CEDEX®; Innovatis, Germany) and the trypan blue dye-exclusion method.
  • Table 2 shows the effects of pH control on antibody oligosaccharides production and M5 content in constant feeding mode.
  • the amount of the mannose-5 glycostructure (M5) was regulated to less than 5.5%.
  • the DGL value declined from 0.80 to 0.21 due to the change of cell density.
  • the M5 amount fluctuated between 8.7% and 25.2% and was higher than that at pH 7.0.
  • the DGL value at pH 7.2 varied from 0.73 to 0.25.
  • immunoglobulin production at pH 7.2 was more than 120% (relative value compared to pH 7.0).
  • Higher immunoglobulin production in the constant absolute amount feeding method induces a higher M5 content of more than 8%. Therefore, with a pH 7.0 control in the constant absolute amount feeding method the M5 content could efficiently be regulated to lower values, i.e. below 8%, compared to pH 7.2 control method.
  • Table 3 shows the effects of DGL control after the start of feeding at day 2-3 and pH on immunoglobulin production and M5 content.
  • the DGL control method was applied in the range of a DGL from 0.2 to 0.8.
  • the M5 content was regulated to be equal or less than 4.0%.
  • the DGL value was operated in the range from 0.4 to 0.6.
  • the M5 content could be controlled to be less than 5.5%.
  • the single feed experiments a single feed was used containing all nutrients and glucose.
  • the dual feed experiments two feeds were used: the first feed contains all nutrients and glucose at a low concentration of 15 g/l and the second feed contains a high concentration of glucose.
  • These different feed experiments were performed in one set with a daily adjustment of the feeding rate and in another set following a predetermined profile based on the viable cell density development recorder in earlier cultivations. As can be seen from Table 5 viability and viable cell density are comparable independently of the employed feeding strategy.
  • CHO cells (8.0-12 ⁇ 10 5 cells/ml) were inoculated in serum free culture media as described above. The cells were grown at 37° C., 98% relative humidity, and 10% CO 2 atmosphere.
  • the feeding medium containing glucose was started to be fed to the main fermenter on the 2 nd or 3 rd day from the beginning of the cultivation.
  • the feeding strategy followed the method to control the degree of glucose limitation (DGL) according to U.S. Patent Application Publication No. US 2006/0127975 A1.
  • FIG. 1 shows the viable cell density and cell viability profiles of the cultivation.
  • the DGL was controlled to be at a value of 0.4-0.5 in various cell densities as shown in FIG. 2 .
  • the feeding rates were changed once or twice a day depending on the cell density at that time.
  • FIG. 3 shows the feeding profiles based on DGL by the fed-batch mode. The feeding rate was changed between 0.8 and 1.6 ml/h depending on the cell density. With this feeding strategy applied, an immunoglobulin production profile was obtained as shown in FIG. 4 .
  • the immunoglobulin production was almost the same and more than 120% of the immunoglobulin production in constant feeding method at day seven as shown in Table 6 (feeding rate of 0.02 g glucose/h).
  • the inoculation size was set at 8.0 ⁇ 10 5 cells/ml, despite the 20 hour delay of the feeding start point, the immunoglobulin obtained was more than 110% (relative value) at day seven.
  • the DGL control method could achieve a stable immunoglobulin production at various inoculation sizes.
  • Table 6 shows the result of the oligosaccharide analysis for the immunoglobulin obtained from the DGL controlled fed-batch cultivation in comparison with the constant feeding method (feeding rate: 0.02 g of glucose/h).
  • feeding rate 0.02 g of glucose/h.
  • M5 mannose-5 glycostructure
  • the M5 content was 4.1% and 3.8%, respectively.
  • the DGL control method was able to regulate the M5 content to less than 5.0%.
  • immunoglobulin G(0) isoform and immunoglobulin G(2) isoform were controlled at the range from 40% to 46% and from 9.0% to 11%, respectively.

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