JP2015514128A5 - - Google Patents

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JP2015514128A5
JP2015514128A5 JP2015505016A JP2015505016A JP2015514128A5 JP 2015514128 A5 JP2015514128 A5 JP 2015514128A5 JP 2015505016 A JP2015505016 A JP 2015505016A JP 2015505016 A JP2015505016 A JP 2015505016A JP 2015514128 A5 JP2015514128 A5 JP 2015514128A5
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lysenin
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Claims (15)

  1. 配列番号2に示す配列の変種を含む変異体ライセニン(lysenin)モノマーであって、前記モノマーがポアを形成でき、前記変種が、配列番号2のアミノ酸配列と配列全長にわたって少なくとも85%の相同性を有し、前記変種が、ポリヌクレオチドと相互作用するモノマーの能力を変更する配列番号2のE84及びE92の位置での置換を含む、変異体ライセニンモノマー。
  2. 前記変種が、ポリヌクレオチドと相互作用するモノマーの能力を変更する配列番号2のE85、E97及びD126の位置での置換を含む、請求項1に記載の変異体ライセニンモノマー。
  3. 前記置換が、(a)前記モノマーの立体効果を変更する、(b)前記モノマーの正味電荷を変更する、(c)前記ポリヌクレオチドと水素結合する前記モノマーの能力を変更する、(d)非局在化電子piシステムを通じて相互作用する化学的基を導入するもしくは除去する、および/または(e)モノマーの構造を変更する、請求項1に記載の変異体ライセニンモノマー。
  4. (i)前記置換が、正味の正電荷を増加または減少させ、(ii)前記置換が、E84又はE92に正に荷電したアミノ酸を導入することによりまたはE84及びE92で負電荷を中和することによって前記正味の正電荷を増加させ、または(iii)前記置換が、前記負に荷電したアミノ酸を1つもしくは複数の無荷電アミノ酸、非極性アミノ酸および/もしくは芳香族アミノ酸で置換することによって、E84及びE92で負電荷を中和する、請求項に記載の変異体ライセニンモノマー。
  5. E84およびE92の位置で置換されたアミノ酸が、アスパラギン(N)、セリン(S)、グルタミン(Q)、アルギニン(R)、グリシン(G)、チロシン(Y)、ロイシン(L)、リジン(K)またはアラニン(A)から選択される、請求項に記載の変異体ライセニンモノマー。
  6. 前記変種が次の置換:
    i.E84Q、E85K、E92Q、E97S、D126GおよびE167Aの1つもしくは複数;
    ii.E76S、E84Q、E85K、E92Q、E97S、D126GおよびE167Aの1つもしくは複数;
    iii.E84Q、E85K、E92Q、E97S、D126G、E167AおよびE50Sの1つもしくは複数;
    iv.E84Q、E85K、E92Q、E97S、D126G、E167AおよびE71Sの1つもしくは複数;
    v.E84Q、E85K、E92Q、E97S、D126G、E167AおよびE94Sの1つもしくは複数;
    vi.E84Q、E85K、E92Q、E97S、D126G、E167AおよびE102Sの1つもしくは複数;
    vii.E84Q、E85K、E92Q、E97S、D126G、E167AおよびE128Sの1つもしくは複数;
    viii.E84Q、E85K、E92Q、E97S、D126G、E167AおよびE135Sの1つもしくは複数;
    ix.E84Q、E85K、E92Q、E97S、D126G、E167AおよびD68Sの1つもしくは複数;
    x.E84Q、E85K、E92Q、E97S、D126G、E167AおよびD121Sの1つもしくは複数;
    xi.E84Q、E85K、E92Q、E97S、D126G、E167AおよびD134Sの1つもしくは複数;または
    xii.E84Q、E85K、E92Q、E97S、D126GおよびE135Sの1つもしくは複数;
    xiii.E84Q、E85K、E92Q、E97S、H103SおよびD126Gの1つもしくは複数;
    xiv.E84Q、E85K、M90S、E92Q、E97SおよびD126Gの1つもしくは複数;
    xv.E84Q、Q87S、E85K、E92Q、E97SおよびD126Gの1つもしくは複数;
    xvi.E84Q、E85S、E92Q、E97SおよびD126Gの1つもしくは複数;
    xvii.E84S、E85K、E92Q、E97SおよびD126Gの1つもしくは複数;
    xviii.H81S、E84Q、E85K、E92Q、E97SおよびD126Gの1つもしくは複数;
    xix.Y79S、E84Q、E85K、E92Q、E97SおよびD126Gの1つもしくは複数;
    xx.F70S、E84Q、E85K、E92Q、E97SおよびD126Gの1つもしくは複数;
    xxi.H58S、E84Q、E85K、E92Q、E97SおよびD126Gの1つもしくは複数;
    xxii.R52S、E84Q、E85K、E92Q、E97SおよびD126Gの1つもしくは複数;
    xxiii.N48S、E84Q、E85K、E92Q、E97SおよびD126Gの1つもしくは複数;
    xxiv.N46S、E84Q、E85K、E92Q、E97SおよびD126Gの1つもしくは複数;
    xxv.M44S、E84Q、E85K、E92Q、E97SおよびD126Gの1つもしくは複数;
    xxvi.E84Q、E85K、E92QおよびE97Sの1つもしくは複数;
    xxvii.E84Q、E85K、E92Q、E97SおよびD126Gの1つもしくは複数;
    xxviii.E84Q、E85K、E92Q、E97SおよびE167Aの1つもしくは複数;
    xxix.E84Q、E85K、E92Q、D126GおよびE167Aの1つもしくは複数;
    xxx.E84Q、E92Q、E97S、D126GおよびE167Aの1つもしくは複数;
    xxxi.E84Q、E85K、E92Q、E97S、D126G、E167AおよびD121Sの1つもしくは複数;
    xxxii.E84Q、E85K、E92Q、E97S、D126G、E167AおよびD68Sの1つもしくは複数;
    xxxiii.E84Q、E85K、E92Q、E97S、D126G、E167AおよびE135Sの1つもしくは複数;
    xxxiv.E84Q、E85K、E92Q、E97S、D126G、E167AおよびE128Sの1つもしくは複数;
    xxxv.E84Q、E85K、E92Q、E97S、D126G、E167AおよびE102Sの1つもしくは複数;
    xxxvi.E84Q、E85K、E92Q、E97S、D126G、E167AおよびE94Sの1つもしくは複数;
    xxxvii.E84Q、E85K、E92Q、E97S、D126G、E167AおよびE71Sの1つもしくは複数;
    xxxviii.E84Q、E85K、E92Q、E97S、D126G、E167AおよびE50Sの1つもしくは複数;
    xxxix.E76S、E84Q、E85K、E92Q、E97S、D126GおよびE167Aの1つもしくは複数;または
    xl.E84Q、E85K、E92Q、E97S、D126GおよびE167Aの1つもしくは複数
    を含む、請求項に記載の変異体ライセニンモノマー。
  7. 前記変種がiからxlのいずれか1つの全ての置換を含む、請求項に記載の変異体ライセニンモノマー。
  8. ライセニン由来の2つ以上の共有結合的に付着されたモノマーを含む構築物であって、モノマーの少なくとも1つが請求項1からのいずれか一項に記載の変異体ライセニンモノマーである、構築物。
  9. (i)前記2つ以上のモノマーが同じであるまたは異なっている、および/または
    (ii)少なくとも1つのモノマーが配列番号2に示す配列を含み、および/または
    (iii)前記構築物が2つのモノマーを含み、および/または
    (iv)前記モノマーが遺伝子的に融合されており、および/または
    (v)前記モノマーがリンカーを介して付着している、
    請求項に記載の構築物。
  10. 請求項1からのいずれか一項に記載の変異体ライセニンモノマーまたは請求項に記載の構築物をコードしているポリヌクレオチド。
  11. 請求項1からのいずれか一項に記載の十分な数の変異体ライセニンモノマーを含むライセニン由来のホモオリゴマーポア。
  12. 請求項1からのいずれか一項に記載の少なくとも1つの変異体ライセニンモノマーを含むライセニン由来のヘテロオリゴマーポア。
  13. (a)標的分析物を請求項11または12に記載のポアに接触させて、前記標的分析物が前記ポアを通って移動するようにするステップ、および
    (b)前記分析物が前記ポアに対して移動するときに1つまたは複数の測定を行うステップであって、前記測定が標的分析物の1つまたは複数の特性を示し、それにより標的分析物を特性決定するステップ
    を含む、標的分析物を特性決定する方法。
  14. 標的分析物を特性決定するための請求項11または12に記載のポアの使用。
  15. (a)請求項11または12に記載のポアおよび(b)ポリヌクレオチド結合タンパク質を含む、標的ポリヌクレオチドを特性決定するためのキット。
JP2015505016A 2012-04-10 2013-03-15 変異体ライセニンポア Active JP6271505B2 (ja)

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