JP2009519705A5 - - Google Patents

Download PDF

Info

Publication number
JP2009519705A5
JP2009519705A5 JP2008540686A JP2008540686A JP2009519705A5 JP 2009519705 A5 JP2009519705 A5 JP 2009519705A5 JP 2008540686 A JP2008540686 A JP 2008540686A JP 2008540686 A JP2008540686 A JP 2008540686A JP 2009519705 A5 JP2009519705 A5 JP 2009519705A5
Authority
JP
Japan
Prior art keywords
pore
nucleotide
individual nucleotides
sequence
nucleic acid
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Granted
Application number
JP2008540686A
Other languages
English (en)
Japanese (ja)
Other versions
JP5328362B2 (ja
JP2009519705A (ja
Filing date
Publication date
Priority claimed from GBGB0523282.2A external-priority patent/GB0523282D0/en
Application filed filed Critical
Publication of JP2009519705A publication Critical patent/JP2009519705A/ja
Publication of JP2009519705A5 publication Critical patent/JP2009519705A5/ja
Application granted granted Critical
Publication of JP5328362B2 publication Critical patent/JP5328362B2/ja
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

JP2008540686A 2005-11-15 2006-11-15 細孔を使用する方法 Active JP5328362B2 (ja)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
GB0523282.2 2005-11-15
GBGB0523282.2A GB0523282D0 (en) 2005-11-15 2005-11-15 Methods using pores
PCT/GB2006/004265 WO2007057668A1 (en) 2005-11-15 2006-11-15 Methods using pores

Publications (3)

Publication Number Publication Date
JP2009519705A JP2009519705A (ja) 2009-05-21
JP2009519705A5 true JP2009519705A5 (enExample) 2010-01-07
JP5328362B2 JP5328362B2 (ja) 2013-10-30

Family

ID=35516986

Family Applications (1)

Application Number Title Priority Date Filing Date
JP2008540686A Active JP5328362B2 (ja) 2005-11-15 2006-11-15 細孔を使用する方法

Country Status (16)

Country Link
US (2) US8105846B2 (enExample)
EP (2) EP1951898B1 (enExample)
JP (1) JP5328362B2 (enExample)
KR (1) KR20080083281A (enExample)
CN (1) CN101356288B (enExample)
AT (1) ATE545712T1 (enExample)
AU (1) AU2006314296B2 (enExample)
BR (1) BRPI0618391A2 (enExample)
CA (1) CA2629009C (enExample)
GB (1) GB0523282D0 (enExample)
IL (1) IL191319A (enExample)
MY (1) MY149161A (enExample)
NZ (1) NZ568163A (enExample)
RU (1) RU2008123842A (enExample)
UA (1) UA95087C2 (enExample)
WO (1) WO2007057668A1 (enExample)

Families Citing this family (90)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
GB0523282D0 (en) 2005-11-15 2005-12-21 Isis Innovation Methods using pores
US8968545B2 (en) * 2012-04-02 2015-03-03 Lux Bio Group, Inc. Apparatus and method for molecular separation, purification, and sensing
EP2158476B8 (en) 2007-05-08 2019-10-09 Trustees of Boston University Chemical functionalization of solid-state nanopores and nanopore arrays and applications thereof
GB2453377A (en) * 2007-10-05 2009-04-08 Isis Innovation Transmembrane protein pores and molecular adapters therefore.
CN102245760A (zh) 2008-07-07 2011-11-16 牛津纳米孔技术有限公司 酶-孔构建体
CN102144037A (zh) * 2008-07-07 2011-08-03 牛津纳米孔技术有限公司 检测碱基的孔
EP2851433B1 (en) * 2008-08-01 2017-10-11 Brown University System and methods for determining molecules using mass spectrometry and related techniques
GB0820927D0 (en) * 2008-11-14 2008-12-24 Isis Innovation Method
WO2010062903A2 (en) * 2008-11-26 2010-06-03 Board Of Regents, The University Of Texas System Genomic sequencing using modified protein pores and ionic liquids
US9222082B2 (en) 2009-01-30 2015-12-29 Oxford Nanopore Technologies Limited Hybridization linkers
WO2010086622A1 (en) 2009-01-30 2010-08-05 Oxford Nanopore Technologies Limited Adaptors for nucleic acid constructs in transmembrane sequencing
GB0905140D0 (en) 2009-03-25 2009-05-06 Isis Innovation Method
WO2010117470A2 (en) 2009-04-10 2010-10-14 Pacific Biosciences Of California, Inc. Nanopore sequencing devices and methods
US9017937B1 (en) 2009-04-10 2015-04-28 Pacific Biosciences Of California, Inc. Nanopore sequencing using ratiometric impedance
AU2010301128B2 (en) 2009-09-30 2014-09-18 Quantapore, Inc. Ultrafast sequencing of biological polymers using a labeled nanopore
CN102741430B (zh) 2009-12-01 2016-07-13 牛津楠路珀尔科技有限公司 生化分析仪器、用于进行生化分析的第一模块以及相关方法
US9005425B2 (en) 2010-03-05 2015-04-14 University Of Utah Research Foundation Detection of nucleic acid lesions and adducts using nanopores
WO2011109825A2 (en) * 2010-03-05 2011-09-09 University Of Utah Research Foundation Detection of nucleic acid lesions and adducts using nanopores
US8652779B2 (en) 2010-04-09 2014-02-18 Pacific Biosciences Of California, Inc. Nanopore sequencing using charge blockade labels
EP2622343B1 (en) 2010-10-01 2016-01-20 Oxford Nanopore Technologies Limited Biochemical analysis apparatus using nanopores
US8673757B2 (en) * 2010-10-28 2014-03-18 International Business Machines Corporation Structure and method for using high-k material as an etch stop layer in dual stress layer process
JP6169976B2 (ja) 2011-02-11 2017-07-26 オックスフォード ナノポール テクノロジーズ リミテッド 変異体細孔
AU2012264497B2 (en) 2011-05-27 2017-06-15 Oxford Nanopore Technologies Limited Coupling method
RU2467218C1 (ru) * 2011-06-16 2012-11-20 Закрытое Акционерное Общество "Научно-производственное объединение "Гидравлические аппараты" (ЗАО "НПО "Гидроаппарат") Гидромуфта
JP6364348B2 (ja) 2011-07-20 2018-07-25 ザ リージェンツ オブ ザ ユニバーシティ オブ カリフォルニア 2細孔装置
WO2013014451A1 (en) 2011-07-25 2013-01-31 Oxford Nanopore Technologies Limited Hairpin loop method for double strand polynucleotide sequencing using transmembrane pores
CN104039979B (zh) 2011-10-21 2016-08-24 牛津纳米孔技术公司 使用孔和Hel308解旋酶表征目标多核苷酸的酶方法
US9617591B2 (en) 2011-12-29 2017-04-11 Oxford Nanopore Technologies Ltd. Method for characterising a polynucleotide by using a XPD helicase
WO2013098562A2 (en) 2011-12-29 2013-07-04 Oxford Nanopore Technologies Limited Enzyme method
US10739341B2 (en) 2012-02-15 2020-08-11 Oxford Nanopore Technologies Limited Aptamer method
KR102083695B1 (ko) 2012-04-10 2020-03-02 옥스포드 나노포어 테크놀로지즈 리미티드 돌연변이체 리세닌 기공
WO2014013259A1 (en) * 2012-07-19 2014-01-23 Oxford Nanopore Technologies Limited Ssb method
EP2875152B1 (en) * 2012-07-19 2019-10-09 Oxford Nanopore Technologies Limited Enzyme construct
JP6614972B2 (ja) 2012-07-19 2019-12-04 オックスフォード ナノポール テクノロジーズ リミテッド 修飾ヘリカーゼ
EP2895618B1 (en) 2012-09-14 2017-07-26 Oxford Nanopore Technologies Limited Sample preparation method
US9651539B2 (en) 2012-10-28 2017-05-16 Quantapore, Inc. Reducing background fluorescence in MEMS materials by low energy ion beam treatment
WO2014072703A1 (en) 2012-11-06 2014-05-15 Oxford Nanopore Technologies Limited Quadruplex method
GB201314695D0 (en) 2013-08-16 2013-10-02 Oxford Nanopore Tech Ltd Method
SG11201507138RA (en) 2013-03-08 2015-10-29 Oxford Nanopore Tech Ltd Enzyme stalling method
GB201318465D0 (en) 2013-10-18 2013-12-04 Oxford Nanopore Tech Ltd Method
GB201313477D0 (en) 2013-07-29 2013-09-11 Univ Leuven Kath Nanopore biosensors for detection of proteins and nucleic acids
CN103267785B (zh) * 2013-05-14 2016-04-13 西北大学 一种检测药物包裹或释放过程的单分子分析方法
AU2014268322B2 (en) 2013-05-24 2019-01-24 Quantapore, Inc. Nanopore-based nucleic acid analysis with mixed FRET detection
ES2817425T3 (es) 2013-05-24 2021-04-07 Illumina Cambridge Ltd Secuenciado pirofosforolítico usando nanoporos
GB201316849D0 (en) 2013-09-23 2013-11-06 Isis Innovation Method
GB201406151D0 (en) 2014-04-04 2014-05-21 Oxford Nanopore Tech Ltd Method
US10724018B2 (en) 2013-10-18 2020-07-28 Oxford Nanopore Technologies Ltd. Modified helicases
US10385389B2 (en) 2014-01-22 2019-08-20 Oxford Nanopore Technologies Ltd. Method for attaching one or more polynucleotide binding proteins to a target polynucleotide
GB201406155D0 (en) 2014-04-04 2014-05-21 Oxford Nanopore Tech Ltd Method
GB201403096D0 (en) 2014-02-21 2014-04-09 Oxford Nanopore Tech Ltd Sample preparation method
CN106460061B (zh) 2014-04-04 2020-03-06 牛津纳米孔技术公司 在双链核酸分子的两端使用纳米孔和锚分子来表征所述双链核酸的方法
GB201417712D0 (en) 2014-10-07 2014-11-19 Oxford Nanopore Tech Ltd Method
WO2015166275A1 (en) 2014-05-02 2015-11-05 Oxford Nanopore Technologies Limited Mutant pores
GB201411285D0 (en) 2014-06-25 2014-08-06 Prosser Joseph Sequencer
KR20170042794A (ko) 2014-09-01 2017-04-19 브이아이비 브이지더블유 돌연변이체 csgg 포어
US10266885B2 (en) 2014-10-07 2019-04-23 Oxford Nanopore Technologies Ltd. Mutant pores
CA2963604C (en) 2014-10-10 2023-02-14 Quantapore, Inc. Nanopore-based polymer analysis with mutually-quenching fluorescent labels
GB201418159D0 (en) 2014-10-14 2014-11-26 Oxford Nanopore Tech Ltd Method
JP6824881B2 (ja) 2014-10-17 2021-02-03 オックスフォード ナノポール テクノロジーズ リミテッド ナノ細孔rnaを特徴付けるための方法
GB201418469D0 (en) 2014-10-17 2014-12-03 Oxford Nanopore Tech Ltd Method
EP3209800B1 (en) 2014-10-24 2022-02-16 Quantapore, Inc. Efficient optical analysis of polymers using arrays of nanostructures
WO2016069806A2 (en) 2014-10-31 2016-05-06 Genia Technologies, Inc. Alpha-hemolysin variants with altered characteristics
US10060903B2 (en) * 2014-11-05 2018-08-28 Genia Technologies, Inc. Exporting measurements of nanopore arrays
US9557294B2 (en) 2014-12-19 2017-01-31 Genia Technologies, Inc. Nanopore-based sequencing with varying voltage stimulus
US9863904B2 (en) 2014-12-19 2018-01-09 Genia Technologies, Inc. Nanopore-based sequencing with varying voltage stimulus
HK1244318A1 (zh) * 2015-02-02 2018-08-03 奥特拉公司 用於生物标志物检测的不稳定的接头
GB201502809D0 (en) 2015-02-19 2015-04-08 Oxford Nanopore Tech Ltd Mutant pore
GB201502810D0 (en) * 2015-02-19 2015-04-08 Oxford Nanopore Tech Ltd Method
US11169138B2 (en) 2015-04-14 2021-11-09 Katholieke Universiteit Leuven Nanopores with internal protein adaptors
US10126262B2 (en) 2015-09-24 2018-11-13 Genia Technologies, Inc. Differential output of analog memories storing nanopore measurement samples
EP3766987B1 (en) * 2015-09-24 2023-08-02 F. Hoffmann-La Roche AG Alpha-hemolysin variants
CN105259229B (zh) * 2015-10-22 2018-04-20 清华大学 一种检测药物的单分子分析方法
US10280411B2 (en) 2015-10-27 2019-05-07 Pacific Biosciences of California, In.c Methods, systems, and reagents for direct RNA sequencing
US10976300B2 (en) 2015-12-08 2021-04-13 Katholieke Universiteit Leuven Modified nanopores, compositions comprising the same, and uses thereof
JP6579948B2 (ja) * 2015-12-24 2019-09-25 株式会社日立ハイテクノロジーズ 生体ポリマを分析するための測定試薬及び分析デバイス
CN116200476A (zh) 2016-03-02 2023-06-02 牛津纳米孔科技公开有限公司 靶分析物测定方法、突变CsgG单体及其构筑体、及聚核苷酸和寡聚孔
EP3440098B1 (en) 2016-04-06 2022-07-27 Oxford Nanopore Technologies plc Mutant pore
GB201609220D0 (en) 2016-05-25 2016-07-06 Oxford Nanopore Tech Ltd Method
CN109196116B (zh) * 2016-05-25 2022-09-27 牛津纳米孔科技公开有限公司 一种表征靶多核苷酸的方法
EP3482196B1 (en) 2016-07-05 2022-02-23 Quantapore, Inc. Optically based nanopore sequencing
GB201619930D0 (en) 2016-11-24 2017-01-11 Oxford Nanopore Tech Apparatus and methods for controlling insertion of a membrane channel into a membrane
CN119530363A (zh) * 2017-02-10 2025-02-28 牛津纳米孔科技公开有限公司 修饰的纳米孔、包含其的组合物及其用途
EP4026916B1 (en) * 2017-04-19 2023-10-18 Electronic Biosciences Inc. Nanopore/nanowell electrode enabled exonuclease sequencing
GB201707122D0 (en) 2017-05-04 2017-06-21 Oxford Nanopore Tech Ltd Pore
CN110914290A (zh) 2017-06-30 2020-03-24 弗拉芒区生物技术研究所 新颖蛋白孔
EP3717905A1 (en) * 2017-11-27 2020-10-07 H. Hoffnabb-La Roche Ag Normalization and baseline shift removal for nanopore-sbs signals
GB201807793D0 (en) 2018-05-14 2018-06-27 Oxford Nanopore Tech Ltd Method
GB202202716D0 (en) 2022-02-28 2022-04-13 Oxford Nanopore Tech Plc Apparatus and methods for controlling insertion of a membrane channel into a membrane
JP2025527266A (ja) 2022-08-02 2025-08-20 グリフィック バイオテクノロジーズ,インク. 重合性分子の結合を介したタンパク質の配列決定
GB202401864D0 (en) 2024-02-12 2024-03-27 Fund Centre De Regulacio Genòmica A method of detecting non-canonical bases in sequencing data

Family Cites Families (41)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
FI82266C (fi) 1982-10-19 1991-02-11 Cetus Corp Foerfarande foer framstaellning av il-2 -mutein.
CA2160909A1 (en) 1993-04-28 1994-11-10 Hagan Bayley Cell-targeted lytic pore-forming agents
US5777078A (en) 1993-04-28 1998-07-07 Worcester Foundation For Experimental Biology Triggered pore-forming agents
US5795782A (en) * 1995-03-17 1998-08-18 President & Fellows Of Harvard College Characterization of individual polymer molecules based on monomer-interface interactions
US6362002B1 (en) 1995-03-17 2002-03-26 President And Fellows Of Harvard College Characterization of individual polymer molecules based on monomer-interface interactions
WO1999005167A1 (en) * 1997-07-25 1999-02-04 University Of Massachusetts Designed protein pores as components for biosensors
US6087099A (en) 1997-09-08 2000-07-11 Myriad Genetics, Inc. Method for sequencing both strands of a double stranded DNA in a single sequencing reaction
US6127166A (en) 1997-11-03 2000-10-03 Bayley; Hagan Molluscan ligament polypeptides and genes encoding them
JPH11137260A (ja) 1997-11-06 1999-05-25 Soyaku Gijutsu Kenkyusho:Kk 抗インフルエンザウイルス環状ダンベル型rna−dnaキメラ化合物及び抗インフルエンザウイルス剤
US6123819A (en) 1997-11-12 2000-09-26 Protiveris, Inc. Nanoelectrode arrays
DE19826758C1 (de) 1998-06-15 1999-10-21 Soft Gene Gmbh Darstellung von linearen kovalent geschlossenen DNA-Molekülen als Expressionskonstrukte
US6267872B1 (en) 1998-11-06 2001-07-31 The Regents Of The University Of California Miniature support for thin films containing single channels or nanopores and methods for using same
US6426231B1 (en) 1998-11-18 2002-07-30 The Texas A&M University System Analyte sensing mediated by adapter/carrier molecules
NO986133D0 (no) 1998-12-23 1998-12-23 Preben Lexow FremgangsmÕte for DNA-sekvensering
EP1192103A1 (en) 1999-06-22 2002-04-03 President And Fellows of Harvard College Control of solid state dimensional features
AU5668100A (en) 1999-06-29 2001-01-22 University Health Network Peptide conjugates for the stabilization of membrane proteins and interactions with biological membranes
JP2003532380A (ja) 1999-12-02 2003-11-05 モレキュラー ステージング,インコーポレイテッド 線状自己アニーリングセグメントからの一本鎖環状dnaの産出
US6916665B2 (en) * 2000-02-11 2005-07-12 The Texas A&M University System Biosensor compositions and methods of use
US7001792B2 (en) 2000-04-24 2006-02-21 Eagle Research & Development, Llc Ultra-fast nucleic acid sequencing device and a method for making and using the same
US6936433B2 (en) 2000-11-27 2005-08-30 The Regents Of The University Of California Methods and devices for characterizing duplex nucleic acid molecules
US7807408B2 (en) 2001-03-19 2010-10-05 President & Fellows Of Harvard College Directed evolution of proteins
JP4211603B2 (ja) * 2001-05-29 2009-01-21 旭硝子株式会社 シゾサッカロマイセス・ポンベ(Schizosaccharomycespombe)宿主の構築方法および異種タンパク質の製造方法
US6863833B1 (en) 2001-06-29 2005-03-08 The Board Of Trustees Of The Leland Stanford Junior University Microfabricated apertures for supporting bilayer lipid membranes
AU2003245272A1 (en) 2002-05-10 2003-11-11 The Texas A And M University System Stochastic sensing through covalent interactions
US7163658B2 (en) 2003-04-23 2007-01-16 Rouvain Bension Rapid sequencing of polymers
WO2005056750A2 (en) 2003-12-11 2005-06-23 Quark Biotech, Inc. Inversion-duplication of nucleic acids and libraries prepared thereby
US7238485B2 (en) 2004-03-23 2007-07-03 President And Fellows Of Harvard College Methods and apparatus for characterizing polynucleotides
AU2005272823B2 (en) 2004-08-13 2012-04-12 President And Fellows Of Harvard College An ultra high-throughput opti-nanopore DNA readout platform
EP1842061A4 (en) 2004-12-21 2009-05-13 Texas A & M Univ Sys HIGH-TEMPERATURE ION CHANNELS AND ION PORES
GB0505971D0 (en) 2005-03-23 2005-04-27 Isis Innovation Delivery of molecules to a lipid bilayer
GB0523282D0 (en) 2005-11-15 2005-12-21 Isis Innovation Methods using pores
ATE518010T1 (de) 2005-12-22 2011-08-15 Pacific Biosciences California Aktive oberflächengekoppelte polymerasen
US7932029B1 (en) 2006-01-04 2011-04-26 Si Lok Methods for nucleic acid mapping and identification of fine-structural-variations in nucleic acids and utilities
WO2008045575A2 (en) 2006-10-13 2008-04-17 J. Craig Venter Institute, Inc. Sequencing method
AU2008217579A1 (en) 2007-02-20 2008-08-28 Oxford Nanopore Technologies Limited Formation of lipid bilayers
US20110005918A1 (en) 2007-04-04 2011-01-13 Akeson Mark A Compositions, devices, systems, and methods for using a nanopore
GB2453377A (en) 2007-10-05 2009-04-08 Isis Innovation Transmembrane protein pores and molecular adapters therefore.
CA2719747C (en) 2008-03-28 2018-02-20 Pacific Biosciences Of California, Inc. Compositions and methods for nucleic acid sequencing
CN102144037A (zh) * 2008-07-07 2011-08-03 牛津纳米孔技术有限公司 检测碱基的孔
CN102245760A (zh) 2008-07-07 2011-11-16 牛津纳米孔技术有限公司 酶-孔构建体
WO2010034018A2 (en) 2008-09-22 2010-03-25 University Of Washington Msp nanopores and related methods

Similar Documents

Publication Publication Date Title
JP2009519705A5 (enExample)
RU2008123842A (ru) Способы с использованием пор
US20220348998A1 (en) Methods for labelling nucleic acids
US10704092B2 (en) Detection methods based on sequencing
JP6329624B2 (ja) 加ピロリン酸分解式配列決定法
ES2876432T3 (es) Técnicas de síntesis de ácidos nucleicos
ES2958715T3 (es) Composiciones y métodos para la secuenciación de polinucleótidos
CN104854246B (zh) 无限制酶的靶标富集
JP2010539966A5 (enExample)
JP2012516146A5 (enExample)
JP2016510218A5 (enExample)
WO2007106534A3 (en) Selective amplification of minority mutations using primer blocking high-affinity oligonucleotides
JP6664575B2 (ja) 核酸分子数計測法
CN112480218A (zh) 用于装配具有多个亚基的蛋白的方法
JP2014513557A5 (enExample)
JP2017530714A (ja) 方法
WO2008051530A3 (en) Polymerase enzymes and reagents for enhanced nucleic acid sequencing
JP2015231383A (ja) マルチプレックス配列決定反応における核酸鋳型の完全性および同定を維持するための方法
CN105026577A (zh) 通过序列捕获检测基因组重排
WO2007130519A3 (en) Viral nucleic acid microarray and method of use
CN104480534A (zh) 一种快速建库方法
JP2010534474A5 (enExample)
WO2008070144A3 (en) Imprinted genes and disease
US12385160B2 (en) Enzyme screening methods
WO2003052135A8 (en) Method and nucleic acids for the analysis of a lung cell proliferative disorder