AU2002232177B2 - Method of detecting nucleotide polymorphism - Google Patents
Method of detecting nucleotide polymorphism Download PDFInfo
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- AU2002232177B2 AU2002232177B2 AU2002232177A AU2002232177A AU2002232177B2 AU 2002232177 B2 AU2002232177 B2 AU 2002232177B2 AU 2002232177 A AU2002232177 A AU 2002232177A AU 2002232177 A AU2002232177 A AU 2002232177A AU 2002232177 B2 AU2002232177 B2 AU 2002232177B2
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- primer
- precursor
- base
- nucleotide
- nucleic acid
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- 125000002467 phosphate group Chemical group [H]OP(=O)(O[H])O[*] 0.000 description 1
- 229920002401 polyacrylamide Polymers 0.000 description 1
- 108091033319 polynucleotide Proteins 0.000 description 1
- 239000002157 polynucleotide Substances 0.000 description 1
- 102000040430 polynucleotide Human genes 0.000 description 1
- 238000000746 purification Methods 0.000 description 1
- 229940048084 pyrophosphate Drugs 0.000 description 1
- 108700042226 ras Genes Proteins 0.000 description 1
- 108010014186 ras Proteins Proteins 0.000 description 1
- 102000016914 ras Proteins Human genes 0.000 description 1
- 230000010076 replication Effects 0.000 description 1
- 238000011160 research Methods 0.000 description 1
- 230000000717 retained effect Effects 0.000 description 1
- 150000003290 ribose derivatives Chemical class 0.000 description 1
- 210000003296 saliva Anatomy 0.000 description 1
- 238000005070 sampling Methods 0.000 description 1
- 210000000582 semen Anatomy 0.000 description 1
- 238000011896 sensitive detection Methods 0.000 description 1
- 238000013207 serial dilution Methods 0.000 description 1
- 210000002966 serum Anatomy 0.000 description 1
- FQENQNTWSFEDLI-UHFFFAOYSA-J sodium diphosphate Chemical compound [Na+].[Na+].[Na+].[Na+].[O-]P([O-])(=O)OP([O-])([O-])=O FQENQNTWSFEDLI-UHFFFAOYSA-J 0.000 description 1
- 229940048086 sodium pyrophosphate Drugs 0.000 description 1
- 239000007787 solid Substances 0.000 description 1
- 241000894007 species Species 0.000 description 1
- 210000003802 sputum Anatomy 0.000 description 1
- 208000024794 sputum Diseases 0.000 description 1
- 230000006641 stabilisation Effects 0.000 description 1
- 238000011105 stabilization Methods 0.000 description 1
- 239000008107 starch Substances 0.000 description 1
- 235000019698 starch Nutrition 0.000 description 1
- 230000001629 suppression Effects 0.000 description 1
- 238000003786 synthesis reaction Methods 0.000 description 1
- 235000019818 tetrasodium diphosphate Nutrition 0.000 description 1
- 239000001577 tetrasodium phosphonato phosphate Substances 0.000 description 1
- 210000001519 tissue Anatomy 0.000 description 1
- 238000013518 transcription Methods 0.000 description 1
- 230000035897 transcription Effects 0.000 description 1
- YNJBWRMUSHSURL-UHFFFAOYSA-N trichloroacetic acid Chemical compound OC(=O)C(Cl)(Cl)Cl YNJBWRMUSHSURL-UHFFFAOYSA-N 0.000 description 1
- 235000011178 triphosphate Nutrition 0.000 description 1
- 239000001226 triphosphate Substances 0.000 description 1
- UNXRWKVEANCORM-UHFFFAOYSA-N triphosphoric acid Chemical compound OP(O)(=O)OP(O)(=O)OP(O)(O)=O UNXRWKVEANCORM-UHFFFAOYSA-N 0.000 description 1
- 239000012137 tryptone Substances 0.000 description 1
- 238000011144 upstream manufacturing Methods 0.000 description 1
- 229940035893 uracil Drugs 0.000 description 1
- 210000002700 urine Anatomy 0.000 description 1
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- 239000012138 yeast extract Substances 0.000 description 1
Classifications
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
- C12Q1/683—Hybridisation assays for detection of mutation or polymorphism involving restriction enzymes, e.g. restriction fragment length polymorphism [RFLP]
Landscapes
- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Life Sciences & Earth Sciences (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- Physics & Mathematics (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Analytical Chemistry (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (15)
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| JP2001039268 | 2001-02-15 | ||
| JP2001-39268 | 2001-02-15 | ||
| JP2001-40721 | 2001-02-16 | ||
| JP2001040721 | 2001-02-16 | ||
| JP2001101055 | 2001-03-30 | ||
| JP2001-101055 | 2001-03-30 | ||
| JP2001-177381 | 2001-06-12 | ||
| JP2001177381 | 2001-06-12 | ||
| JP2001290384 | 2001-09-25 | ||
| JP2001-290384 | 2001-09-25 | ||
| JP2001338440 | 2001-11-02 | ||
| JP2001-338440 | 2001-11-02 | ||
| JP2001-368929 | 2001-12-03 | ||
| JP2001368929 | 2001-12-03 | ||
| PCT/JP2002/001222 WO2002064833A1 (en) | 2001-02-15 | 2002-02-14 | Method of detecting nucleotide polymorphism |
Publications (2)
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| AU2002232177A1 AU2002232177A1 (en) | 2003-02-20 |
| AU2002232177B2 true AU2002232177B2 (en) | 2006-11-09 |
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| AU2002232177A Ceased AU2002232177B2 (en) | 2001-02-15 | 2002-02-14 | Method of detecting nucleotide polymorphism |
Country Status (9)
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| US (1) | US7135291B2 (https=) |
| EP (1) | EP1367136A4 (https=) |
| JP (3) | JP3681729B2 (https=) |
| KR (1) | KR100809949B1 (https=) |
| CN (1) | CN100351393C (https=) |
| AU (1) | AU2002232177B2 (https=) |
| CA (1) | CA2438574C (https=) |
| EA (1) | EA005141B1 (https=) |
| WO (1) | WO2002064833A1 (https=) |
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| TW200404889A (en) * | 2002-05-31 | 2004-04-01 | Takara Bio Inc | Method of typing gene polymorphisms |
| DK2302070T3 (da) * | 2005-06-23 | 2012-11-26 | Keygene Nv | Strategier til identifikation og detektion af polymorfismer med højt gennemløb |
| EP2644708B1 (en) | 2008-04-30 | 2014-12-17 | Integrated Dna Technologies, Inc. | RNASE-H-based assays utilizing modified RNA monomers |
| US8911948B2 (en) | 2008-04-30 | 2014-12-16 | Integrated Dna Technologies, Inc. | RNase H-based assays utilizing modified RNA monomers |
| US10227641B2 (en) | 2008-04-30 | 2019-03-12 | Integrated Dna Technologies, Inc. | RNase H-based assays utilizing modified RNA monomers |
| EP2333109B1 (en) * | 2008-09-03 | 2013-08-07 | Takara Bio, Inc. | Composition for detection of rna |
| CN105200097A (zh) * | 2008-10-20 | 2015-12-30 | 霍夫曼-拉罗奇有限公司 | 改进的等位基因特异性扩增 |
| US20110117559A1 (en) * | 2009-11-13 | 2011-05-19 | Integrated Dna Technologies, Inc. | Small rna detection assays |
| US9238832B2 (en) | 2009-12-11 | 2016-01-19 | Roche Molecular Systems, Inc. | Allele-specific amplification of nucleic acids |
| US8614071B2 (en) | 2009-12-11 | 2013-12-24 | Roche Molecular Systems, Inc. | Preferential amplification of mRNA over DNA using chemically modified primers |
| WO2012135053A2 (en) | 2011-03-25 | 2012-10-04 | Integrated Dna Technologies, Inc. | Rnase h-based assays utilizing modified rna monomers |
| WO2013123238A1 (en) | 2012-02-14 | 2013-08-22 | Great Basin Scientific | Methods of isothermal amplification using blocked primers |
| JP6009649B2 (ja) | 2013-03-14 | 2016-10-19 | タカラバイオ株式会社 | 耐熱性のミスマッチエンドヌクレアーゼの利用方法 |
| CA2906365A1 (en) * | 2013-03-15 | 2014-09-18 | Integrated Dna Technologies, Inc. | Rnase h-based assays utilizing modified rna monomers |
| JP2016536995A (ja) | 2013-11-14 | 2016-12-01 | インテグレイテツド・デイー・エヌ・エイ・テクノロジーズ・インコーポレイテツド | 増大した鋳型識別活性を有するｄｎａポリメラーゼ突然変異体 |
| CA2951514C (en) | 2014-06-18 | 2025-09-09 | Clear Gene, Inc. | METHODS, COMPOSITIONS AND DEVICES FOR THE RAPID ANALYSIS OF BIOLOGICAL MARKERS |
| KR20170053636A (ko) | 2014-09-11 | 2017-05-16 | 다카라 바이오 가부시키가이샤 | 내열성의 미스매치 엔도뉴클레아제의 이용방법 |
| US9909169B2 (en) | 2014-12-17 | 2018-03-06 | Roche Molecular Systems, Inc. | Allele-specific amplification of nucleic acids using blocking oligonucleotides for wild type suppression |
| EP3272865A4 (en) * | 2015-03-20 | 2018-10-17 | Takara Bio Inc. | High-sensitivity method for detecting target nucleic acid |
| CA3008273A1 (en) | 2015-12-18 | 2017-06-22 | Clear Gene, Inc. | Methods, compositions, kits and devices for rapid analysis of biological markers |
| US12275994B2 (en) | 2017-06-22 | 2025-04-15 | Clear Gene, Inc. | Methods and compositions for the analysis of cancer biomarkers |
| CN108148895A (zh) * | 2017-12-29 | 2018-06-12 | 星阵（广州）基因科技有限公司 | 用于检测突变的人akt1基因的引物、试剂盒及方法 |
| AU2022216246A1 (en) * | 2021-02-02 | 2023-09-14 | Rhodx, Inc. | Synthetic polynucleotides and methods for selectively amplifying alleles |
| CN113215163B (zh) * | 2021-05-12 | 2023-05-12 | 苏州海苗生物科技有限公司 | 一种特异性扩增目的基因的分子锁及应用 |
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| WO1992002638A1 (en) * | 1990-08-06 | 1992-02-20 | F. Hoffmann-La Roche Ag | Homogeneous assay system |
| WO2001002557A1 (en) * | 1999-06-29 | 2001-01-11 | Janssen Pharmaceutica N.V. | Neurotrophic factor receptor |
| AU7710200A (en) * | 1999-09-22 | 2001-04-24 | Genecopoeia, Inc. | Method and compositions for improved polynucleotide synthesis |
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| US4521509A (en) * | 1982-11-24 | 1985-06-04 | Research Corporation | Method for degrading DNA |
| US4683202A (en) | 1985-03-28 | 1987-07-28 | Cetus Corporation | Process for amplifying nucleic acid sequences |
| US4683195A (en) | 1986-01-30 | 1987-07-28 | Cetus Corporation | Process for amplifying, detecting, and/or-cloning nucleic acid sequences |
| US5011769A (en) | 1985-12-05 | 1991-04-30 | Meiogenics U.S. Limited Partnership | Methods for detecting nucleic acid sequences |
| US4876187A (en) | 1985-12-05 | 1989-10-24 | Meiogenics, Inc. | Nucleic acid compositions with scissile linkage useful for detecting nucleic acid sequences |
| US4800159A (en) | 1986-02-07 | 1989-01-24 | Cetus Corporation | Process for amplifying, detecting, and/or cloning nucleic acid sequences |
| CA1340807C (en) | 1988-02-24 | 1999-11-02 | Lawrence T. Malek | Nucleic acid amplification process |
| JP2650159B2 (ja) | 1988-02-24 | 1997-09-03 | アクゾ・ノベル・エヌ・ベー | 核酸増幅方法 |
| US5639611A (en) * | 1988-12-12 | 1997-06-17 | City Of Hope | Allele specific polymerase chain reaction |
| US5137806A (en) * | 1989-12-11 | 1992-08-11 | Board Of Regents, The University Of Texas System | Methods and compositions for the detection of sequences in selected DNA molecules |
| US5455166A (en) | 1991-01-31 | 1995-10-03 | Becton, Dickinson And Company | Strand displacement amplification |
| US5846717A (en) | 1996-01-24 | 1998-12-08 | Third Wave Technologies, Inc. | Detection of nucleic acid sequences by invader-directed cleavage |
| WO1995014106A2 (en) | 1993-11-17 | 1995-05-26 | Id Biomedical Corporation | Cycling probe cleavage detection of nucleic acid sequences |
| EP0705905B1 (de) | 1994-07-16 | 2001-10-10 | Roche Diagnostics GmbH | Verfahren zum sensitiven Nachweis von Nukleinsäuren |
| ATE414793T1 (de) * | 1996-01-24 | 2008-12-15 | Third Wave Tech Inc | Invasive spaltung von nukleinsäuren |
| NL1002427C2 (nl) * | 1996-02-23 | 1997-08-26 | Akzo Nobel Nv | Bekledingssamenstelling omvattende een bicyclo- of spiroorthoester functionele verbinding. |
| US5808108A (en) * | 1997-01-15 | 1998-09-15 | Chappelow; Cecil C. | Polymeric compositions and composites prepared from spiroorthocarbonates and epoxy monomers |
| DE19733619C1 (de) * | 1997-08-04 | 2000-02-24 | Markus Schuermann | CASE-PCR, ein hochselektives Verfahren zum Nachweis von Onkogenmutationen und Allelvarianten |
| ATE362532T1 (de) | 1999-03-19 | 2007-06-15 | Takara Bio Inc | Verfahren zur amplifizierung einer nukleinsäuresequenz unter verwendung eines chimären primers |
| DE60029225T2 (de) | 1999-07-02 | 2007-07-05 | Invitrogen Corp., Carlsbad | Zusammensetzungen und verfahren zu höhere empfindlichkeit und spezifität von nukleinsäuresynthese |
| GB9918150D0 (en) | 1999-08-03 | 1999-10-06 | Univ Sheffield | Nuclease variant |
| JP2001136965A (ja) * | 1999-11-12 | 2001-05-22 | Takara Shuzo Co Ltd | 核酸配列の増幅方法 |
| JP3937136B2 (ja) | 1999-12-10 | 2007-06-27 | 東洋紡績株式会社 | 塩基多型の検出方法 |
| CA2412721A1 (en) | 2000-06-26 | 2002-01-03 | Nugen Technologies, Inc. | Methods and compositions for transcription-based nucleic acid amplification |
| US6773885B1 (en) * | 2000-09-29 | 2004-08-10 | Integrated Dna Technologies, Inc. | Compositions and methods for visual ribonuclease detection assays |
| WO2002063049A2 (en) * | 2001-02-02 | 2002-08-15 | Genome Therapeutics Corporation | Methods for determining a nucleotide at a specific location within a nucleic acid molecule |
| DE60235491D1 (de) * | 2001-11-28 | 2010-04-08 | Bio Rad Laboratories | Paralleles scoring von polymorphismen mittels amplifikation und fehlerkorrektur |
-
2002
- 2002-02-14 EP EP02712338A patent/EP1367136A4/en not_active Withdrawn
- 2002-02-14 EA EA200300880A patent/EA005141B1/ru not_active IP Right Cessation
- 2002-02-14 AU AU2002232177A patent/AU2002232177B2/en not_active Ceased
- 2002-02-14 WO PCT/JP2002/001222 patent/WO2002064833A1/ja not_active Ceased
- 2002-02-14 CA CA002438574A patent/CA2438574C/en not_active Expired - Fee Related
- 2002-02-14 JP JP2002565143A patent/JP3681729B2/ja not_active Expired - Fee Related
- 2002-02-14 KR KR1020037010391A patent/KR100809949B1/ko not_active Expired - Fee Related
- 2002-02-14 US US10/468,128 patent/US7135291B2/en not_active Expired - Fee Related
- 2002-02-14 CN CNB028079310A patent/CN100351393C/zh not_active Expired - Fee Related
-
2004
- 2004-07-29 JP JP2004221749A patent/JP2004298200A/ja active Pending
-
2005
- 2005-05-17 JP JP2005144399A patent/JP2005245465A/ja active Pending
Patent Citations (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO1992002638A1 (en) * | 1990-08-06 | 1992-02-20 | F. Hoffmann-La Roche Ag | Homogeneous assay system |
| WO2001002557A1 (en) * | 1999-06-29 | 2001-01-11 | Janssen Pharmaceutica N.V. | Neurotrophic factor receptor |
| AU7710200A (en) * | 1999-09-22 | 2001-04-24 | Genecopoeia, Inc. | Method and compositions for improved polynucleotide synthesis |
Also Published As
| Publication number | Publication date |
|---|---|
| JP2005245465A (ja) | 2005-09-15 |
| US20040137451A1 (en) | 2004-07-15 |
| KR20030074797A (ko) | 2003-09-19 |
| CA2438574A1 (en) | 2002-08-22 |
| CN100351393C (zh) | 2007-11-28 |
| JP3681729B2 (ja) | 2005-08-10 |
| WO2002064833A1 (en) | 2002-08-22 |
| US7135291B2 (en) | 2006-11-14 |
| JP2004298200A (ja) | 2004-10-28 |
| EP1367136A1 (en) | 2003-12-03 |
| EP1367136A4 (en) | 2005-01-12 |
| EA005141B1 (ru) | 2004-12-30 |
| KR100809949B1 (ko) | 2008-03-06 |
| JPWO2002064833A1 (ja) | 2004-06-17 |
| CA2438574C (en) | 2009-08-11 |
| CN1524127A (zh) | 2004-08-25 |
| EA200300880A1 (ru) | 2004-02-26 |
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