JP2019506872A5 - - Google Patents

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JP2019506872A5
JP2019506872A5 JP2018543210A JP2018543210A JP2019506872A5 JP 2019506872 A5 JP2019506872 A5 JP 2019506872A5 JP 2018543210 A JP2018543210 A JP 2018543210A JP 2018543210 A JP2018543210 A JP 2018543210A JP 2019506872 A5 JP2019506872 A5 JP 2019506872A5
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Applications Claiming Priority (9)

Application Number Priority Date Filing Date Title
US201662296310P 2016-02-17 2016-02-17
US62/296,310 2016-02-17
US201662299206P 2016-02-24 2016-02-24
US62/299,206 2016-02-24
US201662429149P 2016-12-02 2016-12-02
US62/429,149 2016-12-02
US201662432017P 2016-12-09 2016-12-09
US62/432,017 2016-12-09
PCT/US2017/018086 WO2017143006A1 (en) 2016-02-17 2017-02-16 Molecular programming tools

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JP2019506872A JP2019506872A (ja) 2019-03-14
JP2019506872A5 true JP2019506872A5 (enExample) 2020-03-26
JP7085999B2 JP7085999B2 (ja) 2022-06-17

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EP (3) EP3916107B1 (enExample)
JP (1) JP7085999B2 (enExample)
CN (2) CN116949140A (enExample)
WO (1) WO2017143006A1 (enExample)

Families Citing this family (61)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP5960709B2 (ja) 2010-10-27 2016-08-02 プレジデント アンド フェローズ オブ ハーバード カレッジ トーホールドプライマーデュプレックスの組成物およびその使用方法
US10024796B2 (en) 2010-10-29 2018-07-17 President And Fellows Of Harvard College Nucleic acid nanostructure barcode probes
US11639522B2 (en) 2015-01-30 2023-05-02 President And Fellows Of Harvard College Microscope-free imaging
EP3916107B1 (en) * 2016-02-17 2023-04-05 President and Fellows of Harvard College Molecular programming tools
CA3017945A1 (en) 2016-04-26 2017-11-02 Ultivue, Inc. Super-resolution immunofluorescence with diffraction-limited preview
CN119574873A (zh) 2016-05-02 2025-03-07 Encodia公司 采用核酸编码的大分子分析
EP3464636B1 (en) 2016-05-27 2022-07-06 President and Fellows of Harvard College Conditional primer extension for single-molecule detection
US10697974B2 (en) 2016-07-22 2020-06-30 President And Fellows Of Harvard College Methods and compositions for protein identification
EP3516079B1 (en) 2016-09-20 2022-06-22 President and Fellows of Harvard College Molecular product authentication systems
JP7116062B2 (ja) * 2017-01-10 2022-08-09 プレジデント アンド フェローズ オブ ハーバード カレッジ 多重化シグナル増幅
US11513126B2 (en) 2017-10-31 2022-11-29 Encodia, Inc. Kits for analysis using nucleic acid encoding and/or label
CN111630179B (zh) * 2018-01-26 2024-07-19 哈佛学院院长及董事 邻近检测方法和组合物
US12142104B2 (en) 2018-03-22 2024-11-12 President And Fellows Of Harvard College Methods and compositions for molecular authentication
EP3802858A1 (en) 2018-06-08 2021-04-14 Ultivue, Inc. Multiplexed catalyzed reporter deposition
US12286621B2 (en) 2018-09-28 2025-04-29 California Institute Of Technology Efficient combinatorial bead barcoding
JP2022513739A (ja) 2018-12-14 2022-02-09 アルティヴュー, インク. 標的を逐次検出するための方法及び組成物
US20220056498A1 (en) * 2019-01-25 2022-02-24 President And Fellows Of Harvard College Compositions and method for synthesizing nucleic acids
CN114072499B (zh) 2019-04-30 2024-08-06 Encodia公司 用于制备分析物的方法和相关试剂盒
WO2021007099A1 (en) 2019-07-05 2021-01-14 Ultivue, Inc. Improved multiplexing method
CN114641581A (zh) * 2019-10-28 2022-06-17 深圳华大智造科技股份有限公司 Dna接头寡核苷酸
US20230221326A1 (en) 2019-12-30 2023-07-13 Ultivue, Inc. Methods for Reducing Nonspecific Interactions on Biological Samples
US12275984B2 (en) 2021-03-02 2025-04-15 10X Genomics, Inc. Sequential hybridization and quenching
CN113156122B (zh) * 2021-04-29 2023-07-04 重庆医科大学 一种检测外泌体pd-l1的荧光传感器及其制备与应用
WO2022256324A1 (en) 2021-06-01 2022-12-08 10X Genomics, Inc. Methods and compositions for analyte detection and probe resolution
WO2022256422A1 (en) 2021-06-02 2022-12-08 10X Genomics, Inc. Sample analysis using asymmetric circularizable probes
US20230012607A1 (en) 2021-07-09 2023-01-19 10X Genomics, Inc. Methods for detecting analytes using sparse labelling
CN117651855A (zh) 2021-07-13 2024-03-05 10X基因组学有限公司 用于制备具有可控厚度的聚合基质的方法
US12139751B2 (en) 2021-07-30 2024-11-12 10X Genomics, Inc. Circularizable probes for in situ analysis
ES2988400T3 (es) 2021-07-30 2024-11-20 10X Genomics Inc Métodos y composiciones para sincronizar reacciones in situ
US12391984B2 (en) 2021-08-03 2025-08-19 10X Genomics, Inc. Compositions and methods for rolling circle amplification
US12529096B2 (en) 2021-08-03 2026-01-20 10X Genomics, Inc. Stabilization and/or compaction of nucleic acid structures
EP4446426B1 (en) 2021-08-16 2026-03-04 10X Genomics, Inc. Probes comprising a split barcode region and methods of use
EP4445377A2 (en) 2021-12-10 2024-10-16 10X Genomics, Inc. Multi-resolution in situ decoding
US20230242974A1 (en) 2021-12-27 2023-08-03 10X Genomics, Inc. Methods and compositions for rolling circle amplification
CN114438079B (zh) * 2021-12-31 2023-08-08 上海交通大学医学院附属仁济医院 一种仿病毒dna多面体框架结构及其制备方法与应用
EP4466376B1 (en) 2022-01-21 2026-03-04 10X Genomics, Inc. Multiple readout signals for analyzing a sample
EP4490737A1 (en) 2022-03-08 2025-01-15 10X Genomics, Inc. In situ code design methods for minimizing optical crowding
WO2023183881A2 (en) 2022-03-24 2023-09-28 Digital Biology Inc. Tissue spatial omics
EP4500481A1 (en) 2022-03-29 2025-02-05 10X Genomics, Inc. Spectral unmixing combined with decoding for super-multiplexed in situ analysis
CN119032271A (zh) 2022-04-01 2024-11-26 10X基因组学有限公司 用于靶向掩蔽自发荧光的组合物和方法
WO2023196526A1 (en) 2022-04-06 2023-10-12 10X Genomics, Inc. Methods for multiplex cell analysis
WO2023215612A1 (en) 2022-05-06 2023-11-09 10X Genomics, Inc. Analysis of antigen and antigen receptor interactions
US20240084378A1 (en) 2022-05-11 2024-03-14 10X Genomics, Inc. Compositions and methods for in situ sequencing
EP4540607A1 (en) 2022-06-17 2025-04-23 10X Genomics, Inc. Catalytic de-crosslinking of samples for in situ analysis
CA3261351A1 (en) 2022-07-12 2024-01-18 Abrus Bio, Inc. DETERMINATION OF PROTEIN INFORMATION BY RECODED AMINO ACID POLYMERS INTO DNA POLYMERS
CN115948605A (zh) * 2022-07-13 2023-04-11 宁波华岳生物科技有限公司 一种基于dna链置换反应与per扩增的病毒检测试剂盒
CA3262364A1 (en) 2022-07-19 2024-01-25 Digital Biology Inc. BARCODE-BASED SPATIAL OMICS
EP4573372A2 (en) 2022-08-19 2025-06-25 Abrus Bio, Inc. Determination of protein information by recoding amino acid polymers into dna polymers
WO2024081869A1 (en) 2022-10-14 2024-04-18 10X Genomics, Inc. Methods for analysis of biological samples
US12372771B2 (en) 2022-11-18 2025-07-29 10X Genomics, Inc. Systems and methods for actively mitigating vibrations
US12581050B2 (en) 2022-11-23 2026-03-17 10X Genomics, Inc. Optical assemblies for machine vision calibration
CN116334185A (zh) * 2023-04-10 2023-06-27 江苏甬泽生物科技有限公司 一种基于PER-Cas12a的核酸检测试剂盒
WO2024249878A1 (en) * 2023-06-01 2024-12-05 Sherlock Biosciences, Inc. Condensed loop-mediated isothermal amplification
WO2025014758A1 (en) 2023-07-07 2025-01-16 10X Genomics, Inc. Systems and methods for tissue bounds detection
WO2025038914A1 (en) 2023-08-16 2025-02-20 10X Genomics, Inc. Systems and methods for image segmentation
US20250117932A1 (en) 2023-10-06 2025-04-10 10X Genomics, Inc. Feature pyramiding for in situ data visualizations (aka dynamic display of molecular information dependent on zoom level)
WO2025122890A1 (en) 2023-12-07 2025-06-12 10X Genomics, Inc. Graphical user interface and method of estimating an instrument run completion time
WO2025160489A1 (en) 2024-01-25 2025-07-31 10X Genomics, Inc. Systems and methods for image segmentation using multiple stain indicators
WO2025189080A1 (en) 2024-03-08 2025-09-12 10X Genomics, Inc. Multi-focus image fusion with background removal
WO2025194033A1 (en) 2024-03-15 2025-09-18 10X Genomics, Inc. Systems and methods for covering and sealing an open well
WO2026009634A1 (ja) * 2024-07-03 2026-01-08 パナソニックIpマネジメント株式会社 情報処理方法、情報処理システム、および情報処理プログラム

Family Cites Families (77)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5030566A (en) 1989-01-04 1991-07-09 Board Of Regents, The University Of Texas System Concatemeric DNA length standards
US5543507A (en) 1992-03-05 1996-08-06 Isis Pharmaceuticals, Inc. Covalently cross-linked oligonucleotides
US5866336A (en) 1996-07-16 1999-02-02 Oncor, Inc. Nucleic acid amplification oligonucleotides with molecular energy transfer labels and methods based thereon
US6485901B1 (en) 1997-10-27 2002-11-26 Boston Probes, Inc. Methods, kits and compositions pertaining to linear beacons
AU2206800A (en) 1998-12-11 2000-06-26 Regents Of The University Of California, The Targeted molecular bar codes and methods for using the same
CN100422323C (zh) 2000-04-07 2008-10-01 荣研化学株式会社 使用双链核酸为模板扩增核酸的方法
US20040161741A1 (en) * 2001-06-30 2004-08-19 Elazar Rabani Novel compositions and processes for analyte detection, quantification and amplification
AU2002367750A1 (en) 2001-08-14 2003-11-03 Discovery, Inc. Isothermal amplification in nucleic acid analysis
WO2003031591A2 (en) 2001-10-10 2003-04-17 Superarray Bioscience Corporation Detecting targets by unique identifier nucleotide tags
EP1442087B1 (de) 2001-11-02 2007-01-24 november Aktiengesellschaft Gesellschaft für Molekulare Medizin Markierungslösung zur fälschungssicheren kennzeichnung eines wertgegenstands, aus der markierungslösung hergestellte markierung sowie verfahren zur markierung eines wertgegenstands
WO2004046321A2 (en) 2002-11-15 2004-06-03 Trustees Of Boston University Cis/trans riboregulators
US20040166520A1 (en) 2003-01-03 2004-08-26 Connolly D. Michael Identifying items with nucleic acid taggants
US20050112610A1 (en) 2003-04-16 2005-05-26 Applied Dna Sciences, Inc. System and method for marking textiles with nucleic acids
US8426216B2 (en) 2003-04-16 2013-04-23 APDN (B.V.I.), Inc. Methods for authenticating articles with optical reporters
US8415164B2 (en) 2003-04-16 2013-04-09 Apdn (B.V.I.) Inc. System and method for secure document printing and detection
EP1615948B1 (en) 2003-04-18 2015-04-01 Becton Dickinson and Company Immuno-amplification
CN1836050A (zh) 2003-07-07 2006-09-20 单细胞系统公司 发夹标记的探针及其使用方法
US20050064435A1 (en) 2003-09-24 2005-03-24 Xing Su Programmable molecular barcodes
CN101048505A (zh) 2004-10-25 2007-10-03 德福根有限公司 用于递送双链rna至有害生物的包含至少一个适配子的多结构域rna分子
EP1841890B1 (en) 2005-01-03 2013-08-14 THE GOVERNMENT OF THE UNITED STATES OF AMERICA, as represented by the Secretary, Department of Health and Human Services Primer for nucleic acid detection
WO2007086890A2 (en) 2005-03-10 2007-08-02 Genemark Inc. Method, apparatus, and system for authentication using labels containing nucleotide seouences
WO2006127558A2 (en) 2005-05-20 2006-11-30 Applied Dna Sciences, Inc System and method for authenticating multiple components associated with a particular product
US20070077570A1 (en) 2005-05-31 2007-04-05 Applera Corporation Multiplexed amplification of short nucleic acids
US20070048759A1 (en) 2005-06-10 2007-03-01 Dan Luo Detection of target molecules with labeled nucleic acid detection molecules
US7842793B2 (en) 2005-06-14 2010-11-30 The California Institute Of Technology Methods of making nucleic acid nanostructures
WO2007002016A2 (en) 2005-06-20 2007-01-04 Johnson & Johnson Systems and methods for product authentication
WO2007005649A2 (en) 2005-06-30 2007-01-11 Applera Corporation Proximity probing of target proteins comprising restriction and/or extension field
JP5537034B2 (ja) 2005-12-23 2014-07-02 ナノストリング テクノロジーズ,インコーポレーテッド ナノレポーターならびにその作製方法および使用方法
WO2007092538A2 (en) 2006-02-07 2007-08-16 President And Fellows Of Harvard College Methods for making nucleotide probes for sequencing and synthesis
JP5260503B2 (ja) 2006-06-01 2013-08-14 サード ウェーブ テクノロジーズ,インコーポレーテッド 核酸の検出
DE102006031015A1 (de) 2006-07-03 2008-01-10 Identif Gmbh Verfahren und Vorrichtung zur Authentifizierung von mit einer Markierung versehenen Gegenständen
WO2008130585A2 (en) 2007-04-17 2008-10-30 Dana-Farber Cancer Institute Wireframe nanostructures
US20080287668A1 (en) 2007-05-14 2008-11-20 Tihamer Thomas Toth-Fejel Nanostructures and methods of making
WO2008144562A1 (en) 2007-05-16 2008-11-27 California Institute Of Technology A versatile nucleic acid hairpin motif for programming biomolecular self-assembly pathways
US8518640B2 (en) * 2007-10-29 2013-08-27 Complete Genomics, Inc. Nucleic acid sequencing and process
US9340416B2 (en) 2008-08-13 2016-05-17 California Institute Of Technology Polynucleotides and related nanoassemblies, structures, arrangements, methods and systems
CN102317471A (zh) 2008-12-11 2012-01-11 加利福尼亚大学董事会 用于单个dna分子的直接测序的方法和系统
GB0910302D0 (en) 2009-06-15 2009-07-29 Lumora Ltd Nucleic acid amplification
US20110129834A1 (en) * 2009-11-24 2011-06-02 Life Technologies Corporation Selective amplification of polynucleotide sequences
US9238832B2 (en) * 2009-12-11 2016-01-19 Roche Molecular Systems, Inc. Allele-specific amplification of nucleic acids
EP2524056A4 (en) 2010-01-15 2013-08-14 Univ British Columbia MULTIPLEX REINFORCEMENT FOR DETECTING NUCLEIC ACID VARIATIONS
CA2802049C (en) 2010-06-07 2018-07-10 Firefly Bioworks, Inc. Scanning multifunctional particles
US8962241B2 (en) 2010-07-20 2015-02-24 California Institute Of Technology Triggered molecular geometry based bioimaging probes
US8877438B2 (en) 2010-07-20 2014-11-04 California Institute Of Technology Self-assembled polynucleotide structure
US9834439B2 (en) 2010-07-20 2017-12-05 California Institute Of Technology Biomolecular self-assembly
JP5960709B2 (ja) 2010-10-27 2016-08-02 プレジデント アンド フェローズ オブ ハーバード カレッジ トーホールドプライマーデュプレックスの組成物およびその使用方法
US10024796B2 (en) 2010-10-29 2018-07-17 President And Fellows Of Harvard College Nucleic acid nanostructure barcode probes
WO2012057689A1 (en) 2010-10-29 2012-05-03 Ge Healthcare Bio-Sciences Ab Proximity ligation technology for western blot applications
WO2012078312A2 (en) 2010-11-12 2012-06-14 Gen9, Inc. Methods and devices for nucleic acids synthesis
US20130035259A1 (en) 2010-11-22 2013-02-07 The University Of Chicago Methods and/or Systems Producing and Providing Sets of Oligonucleotide Conjugates for Assays and Detections
US20120178081A1 (en) 2010-12-31 2012-07-12 Affymetrix. Inc. Methods of Labeling Cells, Labeled Cells, and uses Thereof
KR101350919B1 (ko) 2011-03-14 2014-01-14 (주)바이오니아 핵산을 포함하는 물체의 식별 방법
US8759036B2 (en) 2011-03-21 2014-06-24 Affymetrix, Inc. Methods for synthesizing pools of probes
WO2013012434A1 (en) 2011-07-15 2013-01-24 University Of Miami Bioluminescent stem-loop probes, compositions containing the same and methods utilizing the same
KR20140090633A (ko) * 2011-10-21 2014-07-17 옥스포드 나노포어 테크놀로지즈 리미티드 포어 및 hel308 헬리카제를 사용하여 표적 폴리뉴클레오티드를 특성화하는 방법
WO2013138300A1 (en) 2012-03-13 2013-09-19 Authentiform Technologies, Llc Nucleic acid-based authentication codes
DK2828399T3 (en) 2012-03-22 2017-04-10 Lgc Genomics Ltd SYSTEM FOR DETECTING POLYMERASE CHAIN REACTION USING OLIGONUCLEOTIDS INCLUDING A PHOSPHOROTHIOATE GROUP
AU2013202354A1 (en) 2012-06-18 2014-01-16 Speedx Pty Ltd Target detection and signal amplification
CA2883521A1 (en) 2012-09-11 2014-03-20 Theranos, Inc. Information management systems and methods using a biological signature
US20140272097A1 (en) 2013-03-12 2014-09-18 Applied Dna Sciences, Inc. Dna marking of previously undistinguished items for traceability
CN108004238A (zh) 2012-11-06 2018-05-08 哈佛学院院长等 核糖核酸调节子组合物以及使用方法
US9243283B2 (en) 2012-11-19 2016-01-26 Src, Inc. System and method for authentication and tamper detection using nucleic acid taggants
CN103014168A (zh) 2012-12-28 2013-04-03 北京大学 基于DNA hairpin和RCA的核酸检测方法
WO2015089506A2 (en) * 2013-12-15 2015-06-18 President And Fellows Of Harvard College Methods and compositions relating to optical super-resolution patterning
WO2015095633A1 (en) 2013-12-20 2015-06-25 Board Of Regents, The University Of Texas System Methods and compositions related to nucleic acid circuits and signal transducers
JP6739339B2 (ja) 2014-01-15 2020-08-12 アボット・ラボラトリーズAbbott Laboratories カバーされた配列変換dnaおよび検出方法
US20170051343A1 (en) * 2014-02-14 2017-02-23 The Board Of Regents Of The University Of Texas System Strand exchange hairpin primers that give high allelic discrimination
CN104164488B (zh) 2014-07-09 2016-11-02 青岛艾菲生物技术有限公司 一种单引物引发的核酸恒温扩增方法
US11124846B2 (en) 2014-07-14 2021-09-21 President And Fellows Of Harvard College Compositions comprising riboregulators and methods of use thereof
US20160024558A1 (en) 2014-07-23 2016-01-28 10X Genomics, Inc. Nucleic acid binding proteins and uses thereof
EP3237890A4 (en) 2014-12-16 2018-11-07 President and Fellows of Harvard College Triggered assembly of metafluorophores
US11639522B2 (en) 2015-01-30 2023-05-02 President And Fellows Of Harvard College Microscope-free imaging
EP3916107B1 (en) * 2016-02-17 2023-04-05 President and Fellows of Harvard College Molecular programming tools
EP3516079B1 (en) 2016-09-20 2022-06-22 President and Fellows of Harvard College Molecular product authentication systems
JP7116062B2 (ja) 2017-01-10 2022-08-09 プレジデント アンド フェローズ オブ ハーバード カレッジ 多重化シグナル増幅
CN111630179B (zh) 2018-01-26 2024-07-19 哈佛学院院长及董事 邻近检测方法和组合物
US12142104B2 (en) 2018-03-22 2024-11-12 President And Fellows Of Harvard College Methods and compositions for molecular authentication

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