BR112017007912A2 - transposon de preservação de contiguidade - Google Patents

transposon de preservação de contiguidade

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Publication number
BR112017007912A2
BR112017007912A2 BR112017007912-7A BR112017007912A BR112017007912A2 BR 112017007912 A2 BR112017007912 A2 BR 112017007912A2 BR 112017007912 A BR112017007912 A BR 112017007912A BR 112017007912 A2 BR112017007912 A2 BR 112017007912A2
Authority
BR
Brazil
Prior art keywords
contiguity
transposon
preservation
nucleic acid
target
Prior art date
Application number
BR112017007912-7A
Other languages
English (en)
Inventor
J. Steemers Frank
L. Gunderson Kevin
Zhang Fan
Richard Betley Jason
Anthony Gormley Niall
Meuleman Wouter
Weir Jacqueline
Ioannou Avgousta
Jenkins Gareth
Jackson Rosamond
Morrell Natalie
K. Pokholok Dmitry
J. Norberg Steven
He Molly
Kia Amirali
Pantoja Rigo
Goryshin Igor
Original Assignee
Illumina Cambridge Limited
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Illumina Cambridge Limited filed Critical Illumina Cambridge Limited
Priority to BR122021026779-0A priority Critical patent/BR122021026779B1/pt
Priority to BR122021026781-2A priority patent/BR122021026781B1/pt
Publication of BR112017007912A2 publication Critical patent/BR112017007912A2/pt

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    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034—Isolating an individual clone by screening libraries
    • C12N15/1065—Preparation or screening of tagged libraries, e.g. tagged microorganisms by STM-mutagenesis, tagged polynucleotides, gene tags
    • C—CHEMISTRY; METALLURGY
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    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
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    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034—Isolating an individual clone by screening libraries
    • C12N15/1082—Preparation or screening gene libraries by chromosomal integration of polynucleotide sequences, HR-, site-specific-recombination, transposons, viral vectors
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    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034—Isolating an individual clone by screening libraries
    • C12N15/1093—General methods of preparing gene libraries, not provided for in other subgroups
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
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    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
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    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
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    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C—CHEMISTRY; METALLURGY
    • C40—COMBINATORIAL TECHNOLOGY
    • C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
    • C40B50/00—Methods of creating libraries, e.g. combinatorial synthesis
    • C40B50/06—Biochemical methods, e.g. using enzymes or whole viable microorganisms
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    • C40—COMBINATORIAL TECHNOLOGY
    • C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
    • C40B70/00—Tags or labels specially adapted for combinatorial chemistry or libraries, e.g. fluorescent tags or bar codes
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    • C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
    • C12Q2525/10—Modifications characterised by
    • C12Q2525/191—Modifications characterised by incorporating an adaptor
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    • C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
    • C12Q2563/179—Nucleic acid detection characterized by the use of physical, structural and functional properties the label being a nucleic acid
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    • C12Q2565/00—Nucleic acid analysis characterised by mode or means of detection
    • C12Q2565/50—Detection characterised by immobilisation to a surface
    • C12Q2565/514—Detection characterised by immobilisation to a surface characterised by the use of the arrayed oligonucleotides as identifier tags, e.g. universal addressable array, anti-tag or tag complement array
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    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/154—Methylation markers
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    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/172—Haplotypes

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Genetics & Genomics (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Biotechnology (AREA)
  • General Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Biochemistry (AREA)
  • Molecular Biology (AREA)
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  • Crystallography & Structural Chemistry (AREA)
  • Immunology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Virology (AREA)
  • General Chemical & Material Sciences (AREA)
  • Medicinal Chemistry (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Immobilizing And Processing Of Enzymes And Microorganisms (AREA)
  • Glass Compositions (AREA)
  • Inorganic Insulating Materials (AREA)
  • Transition And Organic Metals Composition Catalysts For Addition Polymerization (AREA)

Abstract

as concretizações aqui proporcionadas referem-se a métodos e composições para preparar uma biblioteca imobilizada de fragmentos de dna de código de barras de um ácido nucleico alvo, identificar variantes genômicas, determinar a informação de contiguidade, informação de fase e estado de metilação do ácido nucleico alvo.
BR112017007912-7A 2014-10-17 2015-10-16 transposon de preservação de contiguidade BR112017007912A2 (pt)

Priority Applications (2)

Application Number Priority Date Filing Date Title
BR122021026779-0A BR122021026779B1 (pt) 2014-10-17 2015-10-16 Transposon de preservação de contiguidade
BR122021026781-2A BR122021026781B1 (pt) 2014-10-17 2015-10-16 Transposon de preservação de contiguidade

Applications Claiming Priority (7)

Application Number Priority Date Filing Date Title
US201462065544P 2014-10-17 2014-10-17
US62/065,544 2014-10-17
US201562157396P 2015-05-05 2015-05-05
US62/157,396 2015-05-05
US201562242880P 2015-10-16 2015-10-16
PCT/US2015/056040 WO2016061517A2 (en) 2014-10-17 2015-10-16 Contiguity preserving transposition
US62/242,880 2015-10-16

Publications (1)

Publication Number Publication Date
BR112017007912A2 true BR112017007912A2 (pt) 2018-01-23

Family

ID=55747561

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BR122021026781-2A BR122021026781B1 (pt) 2014-10-17 2015-10-16 Transposon de preservação de contiguidade
BR122021026779-0A BR122021026779B1 (pt) 2014-10-17 2015-10-16 Transposon de preservação de contiguidade
BR112017007912-7A BR112017007912A2 (pt) 2014-10-17 2015-10-16 transposon de preservação de contiguidade

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BR122021026781-2A BR122021026781B1 (pt) 2014-10-17 2015-10-16 Transposon de preservação de contiguidade
BR122021026779-0A BR122021026779B1 (pt) 2014-10-17 2015-10-16 Transposon de preservação de contiguidade

Country Status (10)

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US (3) US11873480B2 (pt)
JP (3) JP6808617B2 (pt)
KR (2) KR102643955B1 (pt)
AU (2) AU2015331739B2 (pt)
BR (3) BR122021026781B1 (pt)
CA (1) CA2964799A1 (pt)
IL (3) IL299976A (pt)
RU (2) RU2736728C2 (pt)
SG (2) SG10201903408VA (pt)
WO (1) WO2016061517A2 (pt)

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SG11201703139VA (en) 2017-07-28
JP2018501776A (ja) 2018-01-25

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