WO2021235855A1 - L- 분지쇄 아미노산 생산능이 강화된 미생물 및 이를 이용하여 l-분지쇄 아미노산을 생산하는 방법 - Google Patents
L- 분지쇄 아미노산 생산능이 강화된 미생물 및 이를 이용하여 l-분지쇄 아미노산을 생산하는 방법 Download PDFInfo
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- WO2021235855A1 WO2021235855A1 PCT/KR2021/006262 KR2021006262W WO2021235855A1 WO 2021235855 A1 WO2021235855 A1 WO 2021235855A1 KR 2021006262 W KR2021006262 W KR 2021006262W WO 2021235855 A1 WO2021235855 A1 WO 2021235855A1
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/74—Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
- C12N15/77—Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora for Corynebacterium; for Brevibacterium
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/195—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
- C07K14/34—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Corynebacterium (G)
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- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P13/00—Preparation of nitrogen-containing organic compounds
- C12P13/04—Alpha- or beta- amino acids
- C12P13/06—Alanine; Leucine; Isoleucine; Serine; Homoserine
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- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P13/00—Preparation of nitrogen-containing organic compounds
- C12P13/04—Alpha- or beta- amino acids
- C12P13/08—Lysine; Diaminopimelic acid; Threonine; Valine
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2800/00—Nucleic acids vectors
- C12N2800/10—Plasmid DNA
- C12N2800/101—Plasmid DNA for bacteria
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12R—INDEXING SCHEME ASSOCIATED WITH SUBCLASSES C12C - C12Q, RELATING TO MICROORGANISMS
- C12R2001/00—Microorganisms ; Processes using microorganisms
- C12R2001/01—Bacteria or Actinomycetales ; using bacteria or Actinomycetales
- C12R2001/15—Corynebacterium
Definitions
- the present application relates to a microorganism for producing L-branched chain amino acids, in which the activity of regulators of acetate metabolism A is enhanced, and a method for producing L-branched chain amino acids using the same.
- L-amino acid is a basic structural unit of protein and is used as an important material for pharmaceutical raw materials, food additives, animal feed, nutrients, pesticides, and disinfectants.
- Branched Chain Amino Acids (BCAA) is a generic term for essential amino acids L-valine, L-leucine, and L-isoleucine. The branched chain amino acids directly promote antioxidant effects and protein synthesis in muscle cells. It is known to be effective.
- the production of branched-chain amino acids using microorganisms is mainly made through microorganisms of the genus Escherichia or microorganisms of the genus Corynebacterium, and through several steps from pyruvic acid, ketoisocaproate (2-ketoisocaproate) is biosynthesized as a precursor (US 10316297 B2, US 10526586 B2, US 10072278 B2).
- ketoisocaproate 2-ketoisocaproate
- One object of the present application is to provide an L-branched-chain amino acid-producing microorganism with enhanced activity of regulators of acetate metabolism A (A).
- Another object of the present application is to substitute another nucleotide at a position corresponding to any one or more positions selected from among the 34th, 36th, 37th, 41st and 43rd nucleotides of the polynucleotide sequence represented by SEQ ID NO: 1 It is to provide a microorganism comprising a polynucleotide having a promoter activity comprising a, L- branched chain amino acid production microorganisms.
- Another object of the present application is to provide a method for producing L- branched chain amino acids, comprising the step of culturing the microorganism in a medium.
- Another object of the present application is that any one or more nucleotides selected from among the 34th, 36th, 37th, 41st and 43rd nucleotides of the polynucleotide sequence represented by SEQ ID NO: 1 are substituted with other nucleotides, promoter activity To provide a polynucleotide having
- L-branched chain amino acids When culturing a microorganism producing L-branched chain amino acids including the polynucleotide of the present application, L-branched chain amino acids can be produced with high efficiency.
- amino acid prepared by the present application may be applied to various products such as human food or food additives, pharmaceuticals, as well as animal feed or animal feed additives.
- One aspect of the present application is to provide an L-branched-chain amino acid-producing microorganism with enhanced activity of regulators of acetate metabolism A (A).
- regulatory of acetate metabolism A refers to a regulatory protein involved in acetic acid metabolism as the target protein of the present application, and may be encoded by the ramA gene.
- the expression of the acetic acid metabolism regulator A may be enhanced, and may result in an increase in the production capacity of L-branched chain amino acids due to the enhanced expression.
- the term “enhancement” of the activity of the acetabular regulator A means that the activity of the acetic acid metabolism regulator A is increased compared to the intrinsic activity.
- the reinforcement may be used interchangeably with terms such as activation, up-regulation, overexpression, and increase.
- activation, enhancement, upregulation, overexpression, and increase may include those that exhibit an activity that was not originally possessed, or that exhibit improved activity compared to intrinsic activity or activity before modification.
- intrinsic activity refers to the activity of a specific polypeptide originally possessed by the parent strain or unmodified microorganism before transformation when the trait is changed due to genetic mutation caused by natural or artificial factors.
- the enhancement can be achieved by introducing an exogenous polypeptide, or by enhancing the activity and/or increasing the concentration (expression) of the endogenous polypeptide. Whether or not the activity of the acetic acid metabolism regulator A is enhanced can be confirmed from the improvement/increase of the activity, expression level, or amount of the product excreted from the polypeptide.
- the enhancement of the activity of the acetic acid metabolism regulator A can be applied by various methods well known in the art, and is not limited as long as it can enhance the activity of the target polypeptide compared to the microorganism before modification. Specifically, it may be one using genetic engineering and/or protein engineering well known to those skilled in the art as a routine method of molecular biology, but is not limited thereto (eg, Sitnicka et al. Functional Analysis of Genes. Advances in Cell). Biology 2010, Vol. 2. 1-16, Sambrook et al. Molecular Cloning 2012, etc.).
- modification of the polynucleotide sequence encoding the polypeptide to enhance the activity of the polypeptide eg, modification of the polynucleotide sequence of the polypeptide gene to encode a polypeptide that has been modified to enhance the activity of the polypeptide;
- the increase in the intracellular copy number of the polynucleotide encoding the polypeptide is achieved by introduction of a vector to which the polynucleotide encoding the polypeptide is operably linked, which can replicate and function independently of the host, into a host cell.
- the polynucleotide encoding the polypeptide may be achieved by introducing one copy or two or more copies into the chromosome of a host cell.
- the introduction into the chromosome may be performed by introducing a vector capable of inserting the polynucleotide into the chromosome of the host cell into the host cell, but is not limited thereto.
- the vector is as described below.
- the expression control region is not particularly limited thereto, but may include a promoter, an operator sequence, a sequence encoding a ribosome binding site, a sequence controlling the termination of transcription and translation, an enhancer, and the like.
- the method may specifically be to link a strong heterologous promoter instead of the original promoter, but is not limited thereto.
- Examples of known strong promoters include CJ1 to CJ7 promoter (US 7662943 B2), lac promoter, trp promoter, trc promoter, tac promoter, lambda phage PR promoter, PL promoter, tet promoter, gapA promoter, SPL7 promoter, SPL13 (sm3) promoter (US Patent US 10584338 B2), O2 promoter (US Patent US 10273491 B2), tkt promoter, yccA promoter, etc., but is not limited thereto.
- the modification of the nucleotide sequence encoding the start codon or 5'-UTR region of the gene transcript encoding the polypeptide is, for example, a nucleotide sequence encoding another start codon having a higher expression rate of the polypeptide compared to the intrinsic start codon. It may be a substitution, but is not limited thereto.
- the modification of the amino acid sequence or polynucleotide sequence of 4) and 5) above may include deletion, insertion, non-conservative or conservative substitution of the amino acid sequence of the polypeptide or the polynucleotide sequence encoding the polypeptide to enhance the activity of the polypeptide;
- a combination thereof may result in sequence mutation, or replacement with an amino acid sequence or polynucleotide sequence improved to have stronger activity or an amino acid sequence or polynucleotide sequence improved to increase activity, but is not limited thereto.
- the replacement may be specifically performed by inserting a polynucleotide into a chromosome by homologous recombination, but is not limited thereto.
- the vector used may further include a selection marker for confirming whether or not the chromosome is inserted. Selection markers are as described below.
- the introduction of the foreign polynucleotide exhibiting the activity of the polypeptide may be introduction of the foreign polynucleotide encoding the polypeptide exhibiting the same/similar activity as the polypeptide into a host cell.
- the foreign polynucleotide is not limited in its origin or sequence as long as it exhibits the same/similar activity as the polypeptide.
- the method used for the introduction can be performed by appropriately selecting a known transformation method by those skilled in the art, and the introduced polynucleotide is expressed in a host cell to generate a polypeptide and increase its activity.
- Codon optimization of the polynucleotide encoding the polypeptide is codon-optimized so that the transcription or translation of the endogenous polynucleotide is increased in the host cell, or the transcription and translation of the foreign polynucleotide are optimized in the host cell. It may be that its codons are optimized so that the
- Selecting an exposed site by analyzing the tertiary structure of the polypeptide and modifying or chemically modifying the sequence is, for example, by comparing the sequence information of the polypeptide to be analyzed with a database in which sequence information of proteins with known structures is stored. It may be to determine a template protein candidate according to the degree, check the structure based on this, and select an exposed site to be modified or chemically modified and modified or modified.
- Such enhancement of acetic acid metabolism regulator A activity, the activity or concentration (expression amount) of the corresponding polypeptide is increased relative to the activity or concentration of the acetic acid metabolism regulator A expressed in the wild-type or pre-modified microbial strain, or the corresponding The amount of the product produced from the polypeptide may be increased, but is not limited thereto.
- the term "gene expression control sequence” is also used interchangeably with a 'gene expression control region' and is a sequence operably linked thereto so as to express a target gene, and refers to the variant polynucleotide of the present application.
- the gene expression control sequence of the present application may refer to a promoter, enhancer, etc. for carrying out the transcription of a gene, in addition to any operator sequence for regulating transcription, a suitable mRNA encoding a ribosome binding site. It is a concept that may further include a sequence and a DNA that controls the termination of transcription and translation.
- the gene expression control sequence may be a promoter, but is not limited thereto.
- the expression of the acetic acid metabolism regulator A may be enhanced by introducing a mutation into the promoter or replacing it with a promoter with strong activity, but is not limited thereto.
- promoter refers to an untranslated nucleotide sequence upstream of the coding region, including a binding site for polymerase, having an activity of initiating transcription into mRNA of a target gene, that is, polymerase. Refers to a region of DNA that allows me to bind and initiate transcription of a gene. The promoter may be located 5' of the mRNA transcription initiation site.
- operably linked means that the polynucleotide having the promoter activity of the present application is functionally linked with the gene sequence to initiate and mediate transcription of the target gene.
- the operable linkage may be prepared using a genetic recombination technique known in the art, and site-specific DNA cleavage and ligation may be made using a cleavage and ligation enzyme in the art, but is not limited thereto.
- the target gene refers to a gene encoding a target protein to be regulated in expression in a microorganism.
- the gene may be a gene encoding regulators of acetate metabolism A
- the present invention is not limited thereto. More specifically, the gene may be a ramA gene, but is not limited thereto.
- the ramA gene may be an endogenous gene or a foreign gene, and may include a mutation for regulating activity.
- the sequence of the ramA gene can be easily obtained by those skilled in the art through a known database such as GenBank of the US National Institutes of Health.
- Another aspect of the present application is a substitution with another nucleotide at a position corresponding to any one or more positions selected from among the 34th, 36th, 37th, 41st, and 43rd nucleotides of the polynucleotide sequence represented by SEQ ID NO: 1. It is to provide a microorganism comprising a polynucleotide having a promoter activity comprising a, L- branched chain amino acid production microorganisms.
- polynucleotide refers to a DNA strand of a certain length or more as a polymer of nucleotides in which nucleotide monomers are connected in a long chain form by covalent bonds.
- polynucleotide having promoter activity may be referred to as “variant polynucleotide”, “variant promoter”, or “mutant ramA promoter”, etc. In this specification, all of the above-described terms may be used.
- mutation refers to a genetically or non-genetically stable phenotypic change, and may be used interchangeably with “mutation” in the present specification.
- the variant polynucleotide of the present application may have a mutated (increased) promoter activity compared to a polynucleotide that does not include the mutation. Accordingly, it is possible to regulate (increase) the expression of the ramA gene, which is a target gene operably linked to the variant polynucleotide of the present application, and the activity of a protein encoded by the ramA gene, and furthermore, the expression of genes other than the target gene can be adjusted.
- the polynucleotide having the promoter activity is an amino acid, specifically a branched chain amino acid, more specifically, leucine, valine, to increase the expression of a protein involved in increasing the production of amino acids including isoleucine. It means a polynucleotide capable of, but is not limited to.
- polynucleotide sequence represented by SEQ ID NO: 1 may refer to a promoter sequence of a gene encoding regulators of acetate metabolism A (RamA).
- the polynucleotide having the promoter activity of the present application is a mutant polynucleotide having promoter activity, not a naturally-derived sequence, and is capable of increasing the expression of a target protein operably linked compared to the polynucleotide sequence represented by SEQ ID NO: 1.
- the polynucleotide sequence represented by SEQ ID NO: 1, that is, the promoter sequence of the ramA gene is mutated, and the 34th, 36th, 37th, 41st and 43rd of the sequence Any one or more nucleotides selected from among nucleotides may be substituted with other nucleotides.
- the 34th nucleotide of the polynucleotide sequence represented by SEQ ID NO: 1 is substituted with T; the 36th nucleotide is replaced with T; the 37th nucleotide is replaced with G; the 41st nucleotide is replaced with T;
- the 43 th nucleotide may be substituted with A or may include a combination thereof, but is not limited thereto.
- the polynucleotide of the present application may consist of any one nucleotide sequence selected from SEQ ID NOs: 3 to 5.
- the 34th nucleotide of the polynucleotide sequence represented by SEQ ID NO: 1 is substituted with T; the 36th nucleotide is replaced with T; and the 37th nucleotide may be substituted with G.
- the variant polynucleotide of the present application may be composed of SEQ ID NO: 5.
- the 41st nucleotide of the polynucleotide sequence represented by SEQ ID NO: 1 is substituted with T; and the 43rd nucleotide may be substituted with A.
- the variant polynucleotide of the present application may be composed of SEQ ID NO: 4.
- the 34th nucleotide of the polynucleotide sequence represented by SEQ ID NO: 1 is substituted with T; the 36th nucleotide is replaced with T; the 37th nucleotide is replaced with G; the 41st nucleotide is replaced with T; and the 43rd nucleotide may be substituted with A.
- the variant polynucleotide of the present application may be composed of SEQ ID NO: 3.
- L-branched chain amino acid-producing microorganism of the present application is a polynucleotide sequence represented by SEQ ID NO: 1, the 34th nucleotide is replaced with T; the 36th nucleotide is replaced with T; the 37th nucleotide is replaced with G; the 41st nucleotide is replaced with T; It may be a microorganism comprising a polynucleotide having promoter activity in which the 43rd nucleotide is substituted with A or a combination thereof.
- the L-branched chain amino acid producing microorganism of the present application is composed of any one nucleotide sequence selected from SEQ ID NOs: 3 to 5 or a nucleotide sequence having at least 80% or more and less than 100% sequence homology thereto, the promoter activity
- the branch may be a microorganism comprising a polynucleotide. Details of the variant polynucleotide of the present application are the same as those described in detail below.
- branched chain amino acid refers to an amino acid having a branched alkyl group in the side chain, and includes valine, leucine and isoleucine.
- the branched chain amino acid may be an L-branched chain amino acid, and the L-branched chain amino acid may be L-valine, L-leucine and L-isoleucine, but is not limited thereto.
- microorganism that produces branched chain amino acids includes both wild-type microorganisms and microorganisms in which genetic modification has occurred naturally or artificially, in which an external gene is inserted or the activity of an intrinsic gene is enhanced or inactivated. As a microorganism whose specific mechanism is weakened or strengthened due to a cause, it may be a microorganism in which genetic mutation or activity is enhanced for the production of a desired branched chain amino acid.
- microorganism may be used interchangeably with "a microorganism producing branched-chain amino acids” and "a microorganism having the ability to produce branched-chain amino acids.”
- the microorganism may be any microorganism capable of producing branched chain amino acids including the variant polynucleotide of the present application.
- the microorganism producing the branched chain amino acid may be a microorganism characterized in that the desired branched chain amino acid production capacity is increased, including the mutant polynucleotide.
- a microorganism producing a branched chain amino acid or a microorganism having a branched chain amino acid production ability a part of a gene in a branched chain amino acid biosynthesis pathway is enhanced or weakened, or a part of a gene in a branched chain amino acid degradation pathway is enhanced or weakened It may be a microorganism, but is not limited thereto.
- the microorganism of the genus Corynebacterium having branched-chain amino acid production ability is transformed with a vector containing the mutant polynucleotide of the present application, or a gene encoding the polynucleotide of the present application It means a microorganism of the genus Corynebacterium that has been converted and has improved branched chain amino acid production ability.
- the "microorganism of the genus Corynebacterium having improved branched chain amino acid production ability" refers to a microorganism having improved branched chain amino acid production capability than the parent strain or unmodified microorganism before transformation.
- the 'unmodified microorganism' does not exclude a strain containing a mutation that can occur naturally in a microorganism, it is a native strain itself, or a microorganism that does not contain the polynucleotide of the present application, or contains the polynucleotide of the present application It means a microorganism that has not been transformed with a vector.
- the Corynebacterium genus microorganism is specifically Corynebacterium glutamicum ( Corynebacterium glutamicum ), Corynebacterium ammoniagenes ( Corynebacterium ammoniagenes ), Brevibacterium lactofermentum ( Brevibacterium lactofermentum ), Brevibacter Leum flavum ( Brevibacterium flavum ), Corynebacterium thermoaminogenes ( Corynebacterium thermoaminogenes ), Corynebacterium efficiens ( Corynebacterium efficiens ), Corynebacterium stationis ( Corynebacterium stationis ). It is not necessarily limited to this.
- the vector of the present application is an artificial DNA molecule carrying genetic material so that the target polypeptide can be expressed in a suitable host, specifically encoding the target polypeptide operably linked to a suitable expression control region capable of expressing the target gene It may include a DNA preparation including the nucleotide sequence of the polynucleotide. After transformation into a suitable host cell, the vector can replicate or function independently of the host genome, and can be integrated into the genome itself.
- the vector used in the present application is not particularly limited, and any vector known in the art may be used.
- Examples of commonly used vectors include plasmids, cosmids, viruses and bacteriophages in a natural or recombinant state.
- pWE15, M13, MBL3, MBL4, IXII, ASHII, APII, t10, t11, Charon4A, and Charon21A may be used as phage vectors or cosmid vectors, and pDZ-based, pBR-based, and pUC-based plasmid vectors may be used.
- pBluescript II-based pGEM-based, pTZ-based, pCL-based, pET-based and the like
- pDZ pDC, pDCM2, pACYC177, pACYC184, pCL, pECCG117, pUC19, pBR322, pMW118, pCC1BAC vectors and the like
- pC1BAC vectors and the like can be used.
- a target polynucleotide may be inserted into a chromosome through a vector for intracellular chromosome insertion.
- the insertion of the polynucleotide into the chromosome may be performed by any method known in the art, for example, homologous recombination, but is not limited thereto. It may further include a selection marker (selection marker) for confirming whether the chromosome is inserted.
- the selection marker is used to select cells transformed with the vector, that is, to determine whether a target nucleic acid molecule is inserted, and selectable phenotypes such as drug resistance, auxotrophy, resistance to cytotoxic agents, or surface polypeptide expression. Markers to be given can be used. In an environment treated with a selective agent, only the cells expressing the selectable marker survive or exhibit other expression traits, so that the transformed cells can be selected.
- the term “transformation” refers to introducing a vector containing a target polynucleotide into a host cell or microorganism so that the polynucleotide can be expressed/functioned in the host cell.
- the transformed polynucleotide may include all of them regardless of whether they are inserted into the chromosome of the host cell or located extrachromosomally, as long as they can be expressed or function in the host cell.
- the polynucleotide may include DNA and/or RNA encoding a target polypeptide.
- the polynucleotide may be introduced in any form as long as it can be introduced and expressed into a host cell.
- the polynucleotide may be introduced into a host cell in the form of an expression cassette, which is a gene construct including all elements necessary for self-expression.
- the expression cassette may include a promoter operably linked to the polynucleotide, a transcription termination signal, a ribosome binding site, and a translation termination signal.
- the expression cassette may be in the form of an expression vector capable of self-replication.
- the polynucleotide may be introduced into a host cell in its own form and expressed in the host cell, but is not limited thereto.
- Another aspect of the present application provides a method for producing L-branched chain amino acids comprising the step of culturing the microorganism in a medium.
- the method for producing the L-branched chain amino acid may further include the step of recovering or separating the target material from the medium or microorganism.
- polynucleotide "Corynebacterium genus microorganism”, "vector” and "L-branched chain amino acid” are as described above.
- the term "cultivation” means growing the microorganism of the present application under moderately controlled environmental conditions.
- the culturing process of the present application may be made according to a suitable medium and culture conditions known in the art. Such a culture process can be easily adjusted and used by those skilled in the art according to the selected strain.
- the culture may be a batch, continuous and/or fed-batch, but is not limited thereto.
- the term "medium” refers to a material in which nutrients required for culturing the microorganism of the present application are mixed as a main component, and supplies nutrients and growth factors, including water, which are essential for survival and growth. .
- the medium and other culture conditions used for culturing the microorganisms of the genus Corynebacterium of the present application may be used without any particular limitation as long as they are media used for culturing conventional microorganisms, but the microorganism of the present application is used as a suitable carbon source, It can be cultured under aerobic conditions in a normal medium containing a nitrogen source, phosphorus, inorganic compounds, amino acids and/or vitamins while controlling temperature, pH, and the like.
- the culture medium for microorganisms of the genus Corynebacterium can be found in the literature ["Manual of Methods for General Bacteriology” by the American Society for Bacteriology (Washington D.C., USA, 1981)].
- the carbon source includes carbohydrates such as glucose, saccharose, lactose, fructose, sucrose, maltose, and the like; sugar alcohols such as mannitol and sorbitol; organic acids such as pyruvic acid, lactic acid, citric acid and the like; Amino acids such as glutamic acid, methionine, lysine, and the like may be included.
- natural organic nutrient sources such as starch hydrolyzate, molasses, blackstrap molasses, rice winter, cassava, sugar cane offal and corn steep liquor can be used, specifically glucose and sterilized pre-treated molasses (i.e., converted to reducing sugar). molasses) may be used, and other appropriate amounts of carbon sources may be variously used without limitation. These carbon sources may be used alone or in combination of two or more, but is not limited thereto.
- nitrogen source examples include inorganic nitrogen sources such as ammonia, ammonium sulfate, ammonium chloride, ammonium acetate, ammonium phosphate, anmonium carbonate, and ammonium nitrate; Amino acids such as glutamic acid, methionine, glutamine, and organic nitrogen sources such as peptone, NZ-amine, meat extract, yeast extract, malt extract, corn steep liquor, casein hydrolyzate, fish or degradation products thereof, defatted soybean cake or degradation products thereof, etc. can be used These nitrogen sources may be used alone or in combination of two or more, but is not limited thereto.
- inorganic nitrogen sources such as ammonia, ammonium sulfate, ammonium chloride, ammonium acetate, ammonium phosphate, anmonium carbonate, and ammonium nitrate
- Amino acids such as glutamic acid, methionine, glutamine
- organic nitrogen sources such as peptone, NZ-amine, meat extract, yeast extract
- the phosphorus may include monopotassium phosphate, dipotassium phosphate, or a sodium-containing salt corresponding thereto.
- sodium chloride, calcium chloride, iron chloride, magnesium sulfate, iron sulfate, manganese sulfate, calcium carbonate, etc. may be used, and in addition, amino acids, vitamins and/or suitable precursors may be included. These components or precursors may be added to the medium either batchwise or continuously. However, the present invention is not limited thereto.
- compounds such as ammonium hydroxide, potassium hydroxide, ammonia, phosphoric acid, sulfuric acid, etc. may be added to the medium in an appropriate manner to adjust the pH of the medium.
- an antifoaming agent such as fatty acid polyglycol ester may be used to suppress bubble formation.
- oxygen or oxygen-containing gas may be injected into the medium, or nitrogen, hydrogen or carbon dioxide gas may be injected without injection of gas or without injection of gas to maintain anaerobic and microaerobic conditions, which are limited thereto. it is not
- the culture temperature may be maintained at 20 to 45° C., specifically, 25 to 40° C., and may be cultured for about 10 to 160 hours, but is not limited thereto.
- the L-branched chain amino acids produced by the culture of the present application may be secreted into the medium or remain in the cells.
- the L-branched chain amino acid production method of the present application includes a step of preparing the microorganism of the present application, a step of preparing a medium for culturing the strain, or a combination thereof (regardless of order, in any order), for example For example, before the culturing step, it may be further included.
- the method for producing L-branched chain amino acids of the present application may further include recovering L-branched chain amino acids from the culture medium (cultured medium) or the microorganism of the present application.
- the recovering step may be further included after the culturing step.
- the recovery is to collect the desired L-branched chain amino acids using a suitable method known in the art according to the culture method of the microorganism of the present application, for example, a batch, continuous or fed-batch culture method.
- a suitable method known in the art can For example, centrifugation, filtration, treatment with a crystallized protein precipitating agent (salting out method), extraction, ultrasonic disruption, ultrafiltration, dialysis, molecular sieve chromatography (gel filtration), adsorption chromatography, ion exchange chromatography, affinity
- a suitable method known in the art for example, centrifugation, filtration, treatment with a crystallized protein precipitating agent (salting out method), extraction, ultrasonic disruption, ultrafiltration, dialysis, molecular sieve chromatography (gel filtration), adsorption chromatography, ion exchange chromatography, affinity
- chromatography such as island chromatography, HPLC, SMB, or a combination thereof may be used, and a desired L
- the L-branched chain amino acid production method of the present application may additionally include a purification step.
- the purification may be performed using a suitable method known in the art.
- the recovery step and the purification step are performed continuously or discontinuously, regardless of the order, or simultaneously or in one step may be integrated and performed, but is not limited thereto.
- any one or more nucleotides selected from among the 34th, 36th, 37th, 41st and 43rd nucleotides of the polynucleotide sequence represented by SEQ ID NO: 1 are substituted with other nucleotides, having promoter activity A polynucleotide is provided.
- polynucleotide and “promoter” are as described above.
- variant polynucleotide sequence of the present application may be modified by conventionally known mutagenesis methods, for example, direct evolution and site-directed mutagenesis.
- the 34th sequence is fixed to T with respect to the nucleotide sequence of SEQ ID NO: 3; the 36th sequence is fixed at T; 37th sequence fixed at G; the 41st sequence is fixed at T; and the 43rd sequence is fixed to A, and has at least 70%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or more homology with other sequences.
- it may include a polynucleotide comprising a nucleotide sequence having the identity (identity).
- the 41st sequence is fixed to T with respect to the nucleotide sequence of SEQ ID NO: 4; and the 43rd sequence is fixed to A, and has at least 70%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or more homology with other sequences.
- it may include a polynucleotide comprising a nucleotide sequence having the identity (identity).
- the 34th sequence is fixed to T with respect to the nucleotide sequence of SEQ ID NO: 5; the 36th sequence is fixed at T; and the 37th sequence is fixed at G; and a nucleotide having at least 70%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% homology or identity with other sequences polynucleotides comprising the sequence.
- nucleotide sequence having homology or identity may be a sequence having less than 100% identity, except for a sequence having 100% identity in the above categories.
- sequence having homology with the above sequence if it is a polynucleotide sequence substantially identical to or having a biological activity corresponding to any one nucleotide sequence selected from SEQ ID NOs: 3 to 5, the 34th, 36th, 37th, 41st or It is apparent that a case in which a partial sequence other than the 43rd position has a deleted, modified, substituted or added polynucleotide sequence is also included in the scope of the present application.
- the term 'homology' or 'identity' refers to the degree of similarity between two given amino acid sequences or nucleotide sequences and may be expressed as a percentage.
- the terms homology and identity can often be used interchangeably.
- Sequence homology or identity of a conserved polynucleotide or polypeptide is determined by standard alignment algorithms, with default gap penalties established by the program used may be used. Substantially homologous or identical sequences are generally capable of hybridizing with all or part of the sequence under moderate or high stringent conditions. It is apparent that hybridization also includes hybridization with a polynucleotide containing a common codon in a polynucleotide or a codon in consideration of codon degeneracy.
- a GAP program can be defined as the total number of symbols in the shorter of the two sequences divided by the number of similarly aligned symbols (ie, nucleotides or amino acids).
- Default parameters for the GAP program are: (1) a binary comparison matrix (containing values of 1 for identity and 0 for non-identity) and Schwartz and Dayhoff, eds., Atlas Of Protein Sequence And Structure, National Biomedical Research Foundation , pp. 353-358 (1979), Gribskov et al (1986) Nucl. Acids Res. 14: weighted comparison matrix of 6745 (or EDNAFULL (EMBOSS version of NCBI NUC4.4) substitution matrix); (2) a penalty of 3.0 for each gap and an additional 0.10 penalty for each symbol in each gap (or a gap opening penalty of 10, a gap extension penalty of 0.5); and (3) no penalty for end gaps.
- variant polynucleotides of the present application may be located in the coding region within a range that does not change the polynucleotide sequence due to codon degeneracy or in consideration of codons preferred in the organism in which the polynucleotide is to be expressed.
- Various modifications may be made.
- by hybridizing under stringent conditions with a probe that can be prepared from a known gene sequence, for example, a sequence complementary to all or part of the nucleotide sequence one or more nucleotides in the polynucleotide sequence of SEQ ID NO: 1 are different nucleotides Any polynucleotide sequence substituted with and having promoter activity may be included without limitation.
- stringent condition refers to a condition that enables specific hybridization between polynucleotides. These conditions are specifically described in the literature (eg, J. Sambrook et al., supra). For example, genes with high homology or identity, 40% or more, specifically 70% or more, 80% or more, 85% or more, 90% or more, more specifically 95% or more, More specifically, the conditions under which genes having homology or identity of 97% or more, particularly specifically 99% or more, hybridize with each other, and genes with lower homology or identity do not hybridize, or normal southern hybridization (southern hybridization).
- Hybridization requires that two nucleic acids have complementary sequences, although mismatch between bases is possible depending on the stringency of hybridization.
- complementary is used to describe the relationship between nucleotide bases capable of hybridizing to each other.
- adenosine is complementary to thymine
- cytosine is complementary to guanine.
- the present application may also include isolated nucleic acid fragments that are complementary to substantially similar nucleic acid sequences as well as the entire sequence.
- polynucleotides having homology or identity can be detected using hybridization conditions including a hybridization step at a Tm value of 55° C. and using the conditions described above.
- the Tm value may be 60° C., 63° C. or 65° C., but is not limited thereto and may be appropriately adjusted by those skilled in the art depending on the purpose.
- the expression that the variant polynucleotide consists of any one nucleotide sequence selected from SEQ ID NOs: 3 to 5 or a nucleotide sequence having at least 80% or more and less than 100% sequence homology thereto is the polynucleotide
- it means not to exclude cases of addition, and/or deletion, and/or mutation of nucleotides that may occur during the process of linking to the target gene, such as the use of restriction enzymes.
- the polynucleotide having promoter activity consisting of a nucleotide sequence represented by any one of SEQ ID NOs: 3 to 5 is all or part of any one nucleotide sequence selected from SEQ ID NOs: 3 to 5 It may also include a polynucleotide sequence having the promoter activity of the present application by hybridizing under stringent conditions with a complementary sequence to.
- microorganisms containing the variant polynucleotide of the present application it is characterized in that the production of branched chain amino acids including valine, leucine or isoleucine is increased.
- This is significant in that the production of branched chain amino acids can be increased through the polynucleotide having the promoter activity of the present application, compared to the wild-type Corynebacterium sp. strain that can or cannot produce branched chain amino acids in a very trace amount.
- Example 1-1 Artificial mutagenesis through UV irradiation
- Example 1-2 Evaluation of fermentation potency of mutagenic strains and selection of strains
- Glucose 10g broth 5g, polypeptone 10g, sodium chloride 2.5g, yeast extract 5g, agar 20g, urea 2g (based on 1 liter of distilled water)
- Glucose 100g Ammonium Sulfate 40g, Soy Protein 2.5g, Corn Steep Solids 5g, Urea 3g, Potassium Dibasic 1g, Magnesium Sulfate 0.5g, Biotin 100 ⁇ g, Thiamine-HCl 1 mg, calcium pantothenate 2 mg, nicotinamide 3 mg, calcium carbonate 30 g (based on 1 liter of distilled water)
- strain name L-valine (g/L) control KCCM11201P 2.8 experimental group A1 2.9 A2 2.5 A3 3.5 A4 3.0 A5 1.5 A6 1.2 A7 4.2 A8 3.9 A9 2.8 A10 2.4 A11 3.1 A12 3.3 A13 3.8 A14 2.7 A15 2.9
- the strain A7 which had the largest increase in valine production compared to the control KCCM11201P strain, was selected (see Table 1).
- the main genes of the A7 strain with increased valine production capacity were sequenced and compared with the KCCM11201P strain and the Corynebacterium glutamicum ATCC14067 wild-type strain. As a result, it was confirmed that the A7 strain contained a mutation in the promoter position of the regulators of acetate metabolism A (RamA).
- the A7 strain has the nucleotide sequence of SEQ ID NO: 2 including a mutation in the promoter region (SEQ ID NO: 1) of the ramA gene.
- the promoter improved and enhanced RamA expression by substitution of ramA gene Corynebacterium a branched-chain amino acids Solarium spp valine, isoleucine, To determine the effect on the amount of leucine production.
- Example 3-1 Introduction of promoter mutations into Corynebacterium glutamicum KCCM11201P strain and evaluation of L-valine production ability
- a vector including a target mutation was prepared.
- the genomic DNA of the A7 strain was extracted according to the protocol provided in the kit using a G-spin Total DNA extraction mini kit (Intron, Cat. No 17045), and the genomic DNA was used as a template PCR was performed.
- PCR conditions were denatured at 94°C for 5 minutes; After 25 repetitions of denaturation at 94° C. for 30 seconds, annealing at 55° C. for 30 seconds, and polymerization at 72° C. for 150 seconds; A polymerization reaction was performed at 72° C. for 7 minutes, and a PCR product of 1114 bp was obtained using SEQ ID NO: 9 and SEQ ID NO: 10 (hereinafter, referred to as "mutant introduction fragment 1").
- the pDZ-Pm-ramA was transformed into Corynebacterium glutamicum KCCM11201P by homologous recombination on the chromosome (van der Rest et al., Appl Microbiol). Biotechnol 52:541-545, 1999).
- the strain into which the vector was inserted into the chromosome by recombination of the homologous sequence was selected in a medium containing 25 mg/L of kanamycin.
- the recombinant strain was named Corynebacterium glutamicum KCCM11201P-Pm-ramA.
- Flask evaluation was performed to compare the valine-producing ability of the valine-producing strains, Corynebacterium glutamicum KCCM11201P and KCCM11201P-Pm-ramA. After each strain was subcultured in a nutrient medium, each strain was inoculated in a 250 ml corner-baffle flask containing 25 ml of the production medium, and cultured with shaking at 30° C. for 72 hours at 200 rpm. Thereafter, the concentration of L-valine was analyzed using HPLC, and the analyzed concentrations of L-valine are shown in Table 3 below.
- Glucose 10g broth 5g, polypeptone 10g, sodium chloride 2.5g, yeast extract 5g, agar 20g, urea 2g (based on 1 liter of distilled water)
- Glucose 100g Ammonium Sulfate 40g, Soy Protein 2.5g, Corn Steep Solids 5g, Urea 3g, Potassium Dibasic 1g, Magnesium Sulfate 0.5g, Biotin 100 ⁇ g, Thiamine-HCl 1 mg, calcium pantothenate 2 mg, nicotinamide 3 mg, calcium carbonate 30 g (based on 1 liter of distilled water)
- Example 3-2 Production of improved and substituted strains of promoters in Corynebacterium glutamicum KCCM11201P strains and evaluation of L-valine production ability of the prepared strains
- primers 3 (SEQ ID NO: 11) to primer 10 (SEQ ID NO: 18) of Table 4 were synthesized to have xbaI restriction enzyme sites at the 5' and 3' ends.
- the improved ramA promoter was named Pm1, Pm2, and Pm3-ramA, and for the production of Pm1-ramA, a pair of primers of SEQ ID NO: 11 and SEQ ID NO: 13; And the primer pair of SEQ ID NO: 12 and SEQ ID NO: 14 was used, and the primer pair of SEQ ID NO: 11 and SEQ ID NO: 15 for Pm2-ramA production; and primer pairs of SEQ ID NO: 12 and SEQ ID NO: 14 were used.
- the PCR conditions were denaturation at 95°C for 5 minutes, denaturation at 94°C/30 seconds, annealing at 56°C/30 seconds, and polymerization at 72°C/1 minute repeated 30 times, followed by polymerization at 72°C for 7 minutes. was carried out by
- the PCR product obtained above was fusion cloned into the prepared pDZ-Pm-ramA vector after treatment with xbaI restriction enzyme. Fusion cloning was performed using the In-Fusion® HD Cloning Kit (Clontech). E. coli DH5 ⁇ was transformed and plated on LB solid medium containing kanamycin (25 mg/L). After selecting colonies transformed with the plasmid into which the desired gene was inserted through PCR, plasmids were obtained using a plasmid extraction method, and finally pDZ-Pm1-ramA, pDZ-Pm2-ramA, pDZ-Pm3-ramA named.
- primer nucleotide sequence SEQ ID NO: Primer 3 gctcggtacccggggatcctctagataggccggttcggactcgccctgcc SEQ ID NO: 11 Primer 4 ttacgccaagcttgcatgctctagaaacgtgcgcgcagtcatggtgactt SEQ ID NO: 12 Primer 5 CGA CAA GGG TCC ATT ATA CCA CAC CTT TGG GGG T SEQ ID NO: 13 Primer 6 acccccaaaggTgTGgtaTaAtgGacccttgtcg SEQ ID NO: 14 Primer 7 TCG ACA AGG GTA CAT TAT ACT TCC CCT TT SEQ ID NO: 15 Primer 8 aaggggaagtaTaAtgtacccttgtcga SEQ ID NO: 16 Primer 9 AAG GGT ACA GTG TAC CAC ACC
- primers 11 SEQ ID NO: 19
- primers 16 SEQ ID NO: 24 in Table 4 to have xbaI restriction enzyme sites at the 5' and 3' ends was synthesized.
- pDZ-Pcj7-ramA vector was prepared in the same manner as in the above mutation vector construction (Example 3-1) using the primer pair of SEQ ID NO: 23 and SEQ ID NO: 24.
- the pDZ-Pm1-ramA, pDZ-Pm2-ramA, pDZ-Pm3-ramA, and pDZ-Pcj7-ramA were transformed into Corynebacterium glutamicum KCCM11201P by homologous recombination on the chromosome (van der Rest et al. ., Appl Microbiol Biotechnol 52:541-545, 1999).
- the strain into which the vector was inserted into the chromosome by recombination of the homologous sequence was selected in a medium containing 25 mg/L of kanamycin.
- the ramA promoter was improved and the strain substituted with the Pcj7 promoter was confirmed on the chromosome through PCR using the primers of SEQ ID NO: 9 and SEQ ID NO: 10 for the Corynebacterium glutamicum transformant on which the secondary recombination was completed. .
- Corynebacterium glutamicum KCCM11201P-Pm1-ramA, KCCM11201P-Pm2-ramA, and KCCM11201P-Pm3-ramA were named CA08-1518, CA08-1519, and CA08-1520, respectively. It was deposited with the depositary institution, the Korean Culture Center of Microorganisms (KCCM) on April 27, 2020 and was given deposit numbers KCCM12704P, KCCM12705P, and KCCM12706P, respectively.
- the strain substituted with the Pcj7 promoter was named KCCM11201P-Pcj7-ramA. Thereafter, the valine production capacity was evaluated in the same manner as in 3-1 above, and the results are shown in Table 5 below.
- the KCCM11201P-Pm1-ramA (CA08-1518), KCCM11201P-Pm2-ramA (CA08-1519) and KCCM11201P-Pm3-ramA (CA08-1520) strains containing a promoter improved from that of the KCCM11201P strain.
- Example 3-3 In Corynebacterium glutamicum CJ7V strain ramA Gene promoter improvement and production of substituted strains and evaluation of L-valine production ability of the produced strains
- the genomic DNA of the ATCC14067 strain which is a Corynebacterium glutamicum wild type, was extracted using a G-spin Total DNA extraction mini kit (Intron, Cat. No 17045) according to the protocol provided in the kit.
- PCR was performed using the genomic DNA as a template.
- gene fragments (A, B) were obtained using the primer pair of SEQ ID NO: 27 and SEQ ID NO: 28, respectively.
- PCR conditions were denatured at 94°C for 5 minutes; After 25 repetitions of denaturation at 94° C. for 30 seconds, annealing at 55° C. for 30 seconds, and polymerization at 72° C.; Polymerization was performed at 72° C. for 7 minutes.
- the obtained mutagenesis fragment 2 was treated with restriction enzyme XbaI (New England Biolabs, Beverly, MA), and then ligated using a pDZ vector treated with the same restriction enzyme and T4 ligase (New England Biolabs, Beverly, MA). did.
- restriction enzyme XbaI New England Biolabs, Beverly, MA
- T4 ligase New England Biolabs, Beverly, MA
- transforming the produced gene into E. coli DH5 ⁇ it was selected in LB medium containing kanamycin, and DNA was obtained using a DNA-spin plasmid DNA purification kit (iNtRON).
- the vector for the purpose of introducing the A42V mutation of the ilvN gene was named pDZ-ilvN (A42V).
- primer nucleotide sequence SEQ ID NO:
- Primer 17 aatttctagaggcagaccctattctatgaagg SEQ ID NO: 25
- Primer 18 agtgtttcggtctttacagacacgagggac SEQ ID NO: 26
- Primer 19 gtccctcgtgtctgtaaagaccgaaacact SEQ ID NO: 27
- Primer 20 aatttctagacgtgggagtgtcactcgcttgg SEQ ID NO: 28
- the pDZ-ilvN (A42V) was transformed into a wild-type Corynebacterium glutamicum ATCC14067 by homologous recombination on the chromosome (van der Rest et al., Appl Microbiol). Biotechnol 52:541-545, 1999).
- the strain into which the vector was inserted into the chromosome by recombination of the homologous sequence was selected in a medium containing 25 mg/L of kanamycin.
- the gene fragment was amplified through PCR using SEQ ID NO: 25 and SEQ ID NO: 26 for the Corynebacterium glutamicum transformant, and then the mutant insertion strain was identified through gene sequence analysis. .
- the recombinant strain was named Corynebacterium glutamicum CJ7V.
- Corynebacterium glutamicum CJ7V was transformed to each vector in the same manner as in Examples 3-1 and 3-2, and each strain was prepared and each Corynebacterium glutamicum CJ7V-Pm1- They were named ramA, CJ7V-Pm2-ramA, CJ7V-Pm3-ramA and CJ7V-Pcj7-ramA.
- ramA CJ7V-Pm2-ramA
- CJ7V-Pm3-ramA CJ7V-Pcj7-ramA.
- Example 3-4 In Corynebacterium glutamicum CJ8V strain ramA Gene promoter improvement and production of substituted strains and evaluation of L-valine production ability of the produced strains
- Corynebacterium glutamicum CJ8V was transformed to each vector in the same manner as in Examples 3-1 and 3-2, and each strain was prepared and each Corynebacterium glutamicum CJ8V-Pm1- They were named ramA, CJ8V-Pm2-ramA, CJ8V-Pm3-ramA and CJ8V-Pcj7-ramA.
- ramA CJ8V-Pm2-ramA
- CJ8V-Pm3-ramA CJ8V-Pcj7-ramA.
- Example 4 L- leucine-producing strain Corynebacterium glutamicum KCCM11661P, KCCM11662P strains in the promoter mutation introduced strain production and L- leucine production capacity evaluation
- the pDZ-Pm1-ramA, pDZ-Pm2-ramA, pDZ-Pm3-ramA, and pDZ-Pcj7-ramA were transformed into Corynebacterium glutamicum KCCM11661P and KCCM11662P by homologous recombination on the chromosome (van der Rest). et al., Appl Microbiol Biotechnol 52:541-545, 1999).
- the strain into which the vector was inserted into the chromosome by recombination of the homologous sequence was selected in a medium containing 25 mg/L of kanamycin.
- the ramA promoter improved and Pcj7 substituted strain was confirmed on the chromosome through PCR using SEQ ID NO: 9 and SEQ ID NO: 10 for the Corynebacterium glutamicum transformant on which the secondary recombination was completed, and the recombinant strains were Corynebacterium glutamicum KCCM11661P-Pm1-ramA, KCCM11661P Pm2-ramA, K KCCM11661P-Pm3-ramA, KCCM11661P-Pcj7-ramA and KCCM11662P-Pm1-ramA, KCCM11662P Pm2-ramA, K KCCM11662P, respectively It was named KCCM11662P-Pcj7-ramA.
- the produced strain was cultured in the following way to compare the leucine production ability.
- each strain was inoculated in a 250 ml corner-baffle flask containing 25 ml of the production medium, and cultured with shaking at 30° C. for 72 hours at 200 rpm. Then, the concentration of L- leucine was analyzed using HPLC, and the analyzed concentration of L- leucine is shown in Table 9 below.
- Glucose 10g broth 5g, polypeptone 10g, sodium chloride 2.5g, yeast extract 5g, agar 20g, urea 2g (based on 1 liter of distilled water)
- Glucose 50 g Ammonium Sulfate 20 g, Corn Steep Solids 20 g, Potassium Dibasic Phosphate 1 g, Magnesium Sulfate Heptahydrate 0.5 g, Biotin 100 ⁇ g, Thiamine-HCl 1 mg, Calcium Carbonate 15 g (distilled water) 1 liter)
- the KCCM11661P-Pm1-ramA, KCCM11661P Pm2-ramA, and KCCM11661P-Pm3-ramA strains containing the improved promoter were able to confirm the increase in L-leucine production by 11%, 7%, and 11%, respectively, than that of KCCM11661P. It was confirmed that the L-leucine-producing ability at a similar level to that of the KCCM11661P-Pcj7-ramA strain substituted with the promoter was confirmed.
- KCCM11662P-Pm1-ramA, KCCM11662P Pm2-ramA, KCCM11662P-Pm3-ramA strains containing the improved promoter were able to confirm 10%, 6%, and 10% L-leucine production increase rates, respectively, than KCCM11662P, and a strong promoter It was confirmed that the KCCM11662P-Pcj7-ramA strain substituted with L-leucine showed a similar level of production ability.
- Example 5 In the L-isoleucine producing strain Corynebacterium glutamicum KCCM11248P strain ramA Gene promoter improvement and substituted strain production and L-isoleucine production capacity evaluation
- KCCM11248P-Pm-ramA, KCCM11248P-Pm1-ramA, KCCM11248P-Pm2-ramA, KCCM11248P-Pm3-ramA and KCCM11248P-Pcj7-ramA strains were cultured in the following manner to evaluate isoleucine-producing ability.
- Each strain was inoculated in a 250 ml corner-baffle flask containing 25 ml of the seed medium, and incubated at 30° C. for 20 hours with shaking at 200 rpm. Then, 1 ml of the seed culture solution was inoculated into a 250 ml corner-baffle flask containing 24 ml of the production medium and cultured with shaking at 30° C. for 48 hours at 200 rpm.
- the composition of the species medium and the production medium is as follows, respectively.
- Glucose 50 g (NH 4 ) 2 SO 4 12.5 g, Soy Protein 2.5 g, Corn Steep Solids 5 g, Urea 3 g, KH 2 PO 4 1 g, MgSO 4 7H 2 O 0.5 g, Biotin 100 ⁇ g, thiamine hydrochloride 1000 ⁇ g, calcium-pantothenic acid 2000 ⁇ g, nicotinamide 3000 ⁇ g, CaCO 3 30 g (based on 1 liter of distilled water)
- the KCCM11248P-Pm1-ramA, KCCM11248P-Pm2-ramA, and KCCM11248P-Pm3-ramA strains containing the improved promoter were able to confirm 39%, 32%, and 18% L-isoleucine production increase rates, respectively, than KCCM11248P. It was confirmed that L-isoleucine-producing ability at a level similar to or higher than that of the KCCM11248P-Pcj7-ramA strain substituted with the promoter was confirmed.
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Abstract
Description
균주명 | L-발린(g/L) | |
대조군 | KCCM11201P | 2.8 |
실험군 | A1 | 2.9 |
A2 | 2.5 | |
A3 | 3.5 | |
A4 | 3.0 | |
A5 | 1.5 | |
A6 | 1.2 | |
A7 | 4.2 | |
A8 | 3.9 | |
A9 | 2.8 | |
A10 | 2.4 | |
A11 | 3.1 | |
A12 | 3.3 | |
A13 | 3.8 | |
A14 | 2.7 | |
A15 | 2.9 |
프라이머 | 염기 서열 | 서열번호 |
Pm(TATAAT)-F1 | gctctagaTAGGCCGGTTCGGACTCGCCCTGCC | 서열번호 9 |
Pm(TATAAT)-R1 | gctctagaaacgtgcgcgcagtcatggtgactt | 서열번호 10 |
균주 | L-발린 (g/L) | |||
배치 1 | 배치 2 | 배치 3 | 평균 | |
KCCM11201P | 2.6 | 2.5 | 2.7 | 2.6 |
KCCM11201P-Pm-ramA | 3.2 | 3.3 | 3.1 | 3.2 |
프라이머 | 염기 서열 | 서열번호 |
프라이머 3 | gctcggtacccggggatcctctagataggccggttcggactcgccctgcc | 서열번호11 |
프라이머 4 | ttacgccaagcttgcatgctctagaaacgtgcgcgcagtcatggtgactt | 서열번호12 |
프라이머 5 | CGA CAA GGG TCC ATT ATA CCA CAC CTT TGG GGG T | 서열번호13 |
프라이머 6 | acccccaaaggTgTGgtaTaAtgGacccttgtcg | 서열번호14 |
프라이머 7 | TCG ACA AGG GTA CAT TAT ACT TCC CCT TT | 서열번호15 |
프라이머 8 | aaaggggaagtaTaAtgtacccttgtcga | 서열번호16 |
프라이머 9 | AAG GGT ACA GTG TAC CAC ACC TTT GGG GGT | 서열번호17 |
프라이머 10 | acccccaaaggTgTGgtacactgtaccctt | 서열번호18 |
프라이머 11 | attcgagctcggtacccggtctagatcaagaaactgcaggtgtgtaccga | 서열번호19 |
프라이머 12 | CAT CGG TAG GCT ATG CCG GCG GTA CCT TCA GAT TTC CTC CTG CTT TAC AC | 서열번호20 |
프라이머 13 | gtaccgccggcatagcctaccgatg | 서열번호21 |
프라이머 14 | AGT GTT TCC TTT CGT TGG GTA CGT A | 서열번호22 |
프라이머 15 | tacgtacccaacgaaaggaaacactgtggatacccagcggattaaagatg | 서열번호23 |
프라이머 16 | TGC ATG CCT GCA GGT CGA CTC TAG AAT CGC GGC GCA GAT CCT CAT CGG TC | 서열번호24 |
균주 | L-발린 (g/L) | |||
배치 1 | 배치 2 | 배치 3 | 평균 | |
KCCM11201P | 2.6 | 2.5 | 2.7 | 2.6 |
KCCM11201P-Pm1-ramA(CA08-1518) | 3.2 | 3.4 | 3.3 | 3.3 |
KCCM11201P-Pm2-ramA(CA08-1519) | 3.1 | 3.2 | 3.3 | 3.2 |
KCCM11201P-Pm3-ramA(CA08-1520) | 3.2 | 3.0 | 3.1 | 3.1 |
KCCM11201P-Pcj7-ramA | 2.9 | 3.1 | 3.0 | 3.0 |
프라이머 | 염기 서열 | 서열번호 |
프라이머 17 | aatttctagaggcagaccctattctatgaagg | 서열번호 25 |
프라이머 18 | agtgtttcggtctttacagacacgagggac | 서열번호 26 |
프라이머 19 | gtccctcgtgtctgtaaagaccgaaacact | 서열번호 27 |
프라이머 20 | aatttctagacgtgggagtgtcactcgcttgg | 서열번호 28 |
균주 | L-발린 (g/L) | |||
배치 1 | 배치 2 | 배치 3 | 평균 | |
CJ7V | 2.2 | 2.2 | 2.3 | 2.2 |
CJ7V-Pm1-ramA | 2.8 | 2.7 | 2.7 | 2.7 |
CJ7V-Pm2-ramA | 2.6 | 2.6 | 2.7 | 2.6 |
CJ7V-Pm3-ramA | 2.6 | 2.4 | 2.5 | 2.5 |
CJ7V-Pcj7-ramA | 2.4 | 2.5 | 2.6 | 2.5 |
균주 | L-발린 (g/L) | |||
배치 1 | 배치 2 | 배치 3 | 평균 | |
CJ8V | 1.9 | 2.0 | 1.9 | 1.9 |
CJ8V-Pm1-ramA | 2.3 | 2.3 | 2.3 | 2.3 |
CJ8V-Pm2-ramA | 2.3 | 2.1 | 2.2 | 2.2 |
CJ8V-Pm3-ramA | 2.0 | 2.1 | 2.2 | 2.1 |
CJ8V-Pcj7-ramA | 2.1 | 2.0 | 1.9 | 2.0 |
균주 | L-루이신 (g/L) | |||
배치 1 | 배치 2 | 배치 3 | 평균 | |
KCCM11661P | 2.8 | 2.6 | 2.7 | 2.7 |
KCCM11661P-Pm1-ramA | 3.2 | 2.9 | 2.8 | 3.0 |
KCCM11661P Pm2-ramA | 3.0 | 2.8 | 2.9 | 2.9 |
KCCM11661P-Pm3-ramA | 3.1 | 3.1 | 3.0 | 3.0 |
KCCM11661P -Pcj7-ramA | 3.2 | 3.1 | 3.1 | 3.1 |
KCCM11662P | 3.0 | 3.1 | 2.9 | 3.0 |
KCCM11662P-Pm1-ramA | 3.3 | 3.3 | 3.5 | 3.3 |
KCCM11662P Pm2-ramA | 3.3 | 3.2 | 3.2 | 3.2 |
KCCM11662P-Pm3-ramA | 3.2 | 3.5 | 3.3 | 3.3 |
KCCM11662P -Pcj7-ramA | 3.4 | 3.4 | 3.3 | 3.3 |
균주 | L-이소류신 (g/L) | |||
배치 1 | 배치 2 | 배치 3 | 평균 | |
KCCM11248P | 1.6 | 1.3 | 1.4 | 1.43 |
KCCM11248P-Pm1-ramA | 2.0 | 1.8 | 2.2 | 2.00 |
KCCM11248P-Pm2-ramA | 1.8 | 2.0 | 1.9 | 1.90 |
KCCM11248P-Pm3-ramA | 1.7 | 1.8 | 1.6 | 1.70 |
KCCM11248P-Pcj7-ramA | 1.8 | 1.8 | 1.7 | 1.76 |
Claims (13)
- 초산 대사 조절자 A(regulators of acetate metabolism A)의 활성이 강화된, L-분지쇄 아미노산 생산 미생물.
- 제 1항에 있어서, 상기 활성 강화는 초산 대사 조절자 A 유전자 발현 조절 서열에 변이를 도입; 상기 유전자 발현 조절 서열을 발현을 향상시키는 서열로 교체; 활성이 강화되도록 해당 유전자에 변이를 추가적으로 도입 또는 이들의 조합에 의하여 달성되는 것인, 미생물.
- 제 2항에 있어서, 상기 유전자 발현 조절 서열은 프로모터인 것인, 미생물.
- 제 2항에 있어서, 서열번호 1로 표시되는 폴리뉴클레오티드 서열의 34번째, 36번째, 37번째, 41번째 및 43번째 뉴클레오티드 중 선택되는 어느 하나 이상의 위치에 상응하는 위치에서 다른 뉴클레오티드로의 치환을 포함하는 프로모터 활성을 가지는 폴리뉴클레오티드를 포함하는, 미생물.
- 제 4항에 있어서, 상기 폴리뉴클레오티드는 서열번호 1로 표시되는 폴리뉴클레오티드 서열의 34번째 뉴클레오티드가 T로 치환; 36번째 뉴클레오티드가 T로 치환; 37번째 뉴클레오티드가 G로 치환; 41번째 뉴클레오티드가 T로 치환; 43번째 뉴클레오티드가 A로 치환되거나 또는 이들의 조합을 포함하는 것인, 미생물.
- 제 4항에 있어서, 상기 폴리뉴클레오티드는, 서열번호 3 내지 5 중 선택되는 어느 하나의 뉴클레오티드 서열로 이루어지는 것인, 미생물.
- 제 1항에 있어서, 상기 미생물은 코리네박테리움 속인 것인, 미생물.
- 제 7항에 있어서, 상기 코리네박테리움 속 미생물은 코리네박테리움 글루타미쿰을 포함하는, 미생물.
- 제 1항 내지 제8항 중 어느 한 항의 미생물을 배지에서 배양하는 단계를 포함하는, L-분지쇄 아미노산을 생산하는 방법.
- 제 9항에 있어서, 상기의 배지 또는 미생물로부터 회수 또는 분리하는 단계를 추가로 포함하는, L-분지쇄 아미노산을 생산하는 방법.
- 서열번호 1로 표시되는 폴리뉴클레오티드 서열의 34번째, 36번째, 37번째, 41번째 및 43번째 뉴클레오티드 중 선택되는 어느 하나 이상의 위치에 상응하는 위치에서 다른 뉴클레오티드로의 치환을 포함하는, 프로모터 활성을 가지는 폴리뉴클레오티드.
- 제 11항에 있어서, 상기 폴리뉴클레오티드는 서열번호 1로 표시되는 폴리뉴클레오티드 서열의 34번째 뉴클레오티드가 T로 치환; 36번째 뉴클레오티드가 T로 치환; 37번째 뉴클레오티드가 G로 치환; 41번째 뉴클레오티드가 T로 치환; 43번째 뉴클레오티드가 A로 치환되거나 또는 이들의 조합을 포함하는 것인, 폴리뉴클레오티드.
- 제 11항에 있어서, 상기 폴리뉴클레오티드는, 서열번호 3 내지 5 중 선택되는 어느 하나의 뉴클레오티드 서열로 이루어지는, 폴리뉴클레오티드.
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