JP2017106933A5 - - Google Patents

Download PDF

Info

Publication number
JP2017106933A5
JP2017106933A5 JP2017049533A JP2017049533A JP2017106933A5 JP 2017106933 A5 JP2017106933 A5 JP 2017106933A5 JP 2017049533 A JP2017049533 A JP 2017049533A JP 2017049533 A JP2017049533 A JP 2017049533A JP 2017106933 A5 JP2017106933 A5 JP 2017106933A5
Authority
JP
Japan
Prior art keywords
nucleic acid
acid molecule
molecule
nanopore
progression
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Granted
Application number
JP2017049533A
Other languages
English (en)
Japanese (ja)
Other versions
JP6431108B2 (ja
JP2017106933A (ja
Filing date
Publication date
Application filed filed Critical
Publication of JP2017106933A publication Critical patent/JP2017106933A/ja
Publication of JP2017106933A5 publication Critical patent/JP2017106933A5/ja
Application granted granted Critical
Publication of JP6431108B2 publication Critical patent/JP6431108B2/ja
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

JP2017049533A 2012-02-16 2017-03-15 標的分子を検出する方法 Active JP6431108B2 (ja)

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
US201261599871P 2012-02-16 2012-02-16
US61/599,871 2012-02-16
US201261600398P 2012-02-17 2012-02-17
US61/600,398 2012-02-17

Related Parent Applications (1)

Application Number Title Priority Date Filing Date
JP2014557852A Division JP6178805B2 (ja) 2012-02-16 2013-02-15 ナノ細孔センサーとともに使用するための二重層を作製するための方法

Related Child Applications (1)

Application Number Title Priority Date Filing Date
JP2018034689A Division JP6617167B2 (ja) 2012-02-16 2018-02-28 ナノ細孔センサーとともに使用するための二重層を作製するための方法

Publications (3)

Publication Number Publication Date
JP2017106933A JP2017106933A (ja) 2017-06-15
JP2017106933A5 true JP2017106933A5 (enExample) 2018-04-12
JP6431108B2 JP6431108B2 (ja) 2018-11-28

Family

ID=48984792

Family Applications (4)

Application Number Title Priority Date Filing Date
JP2014557852A Active JP6178805B2 (ja) 2012-02-16 2013-02-15 ナノ細孔センサーとともに使用するための二重層を作製するための方法
JP2017049533A Active JP6431108B2 (ja) 2012-02-16 2017-03-15 標的分子を検出する方法
JP2018034689A Active JP6617167B2 (ja) 2012-02-16 2018-02-28 ナノ細孔センサーとともに使用するための二重層を作製するための方法
JP2019094447A Withdrawn JP2019164155A (ja) 2012-02-16 2019-05-20 ナノ細孔センサーとともに使用するための二重層を作製するための方法

Family Applications Before (1)

Application Number Title Priority Date Filing Date
JP2014557852A Active JP6178805B2 (ja) 2012-02-16 2013-02-15 ナノ細孔センサーとともに使用するための二重層を作製するための方法

Family Applications After (2)

Application Number Title Priority Date Filing Date
JP2018034689A Active JP6617167B2 (ja) 2012-02-16 2018-02-28 ナノ細孔センサーとともに使用するための二重層を作製するための方法
JP2019094447A Withdrawn JP2019164155A (ja) 2012-02-16 2019-05-20 ナノ細孔センサーとともに使用するための二重層を作製するための方法

Country Status (7)

Country Link
US (5) US9850534B2 (enExample)
EP (2) EP2814983B1 (enExample)
JP (4) JP6178805B2 (enExample)
CN (2) CN104254619B (enExample)
CA (1) CA2864125C (enExample)
ES (1) ES2732256T3 (enExample)
WO (1) WO2013123450A1 (enExample)

Families Citing this family (83)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP2652153B1 (en) 2010-12-17 2017-07-05 The Trustees of Columbia University in the City of New York Dna sequencing by synthesis using modified nucleotides and nanopore detection
WO2013109970A1 (en) * 2012-01-20 2013-07-25 Genia Technologies, Inc. Nanopore based molecular detection and sequencing
EP2814983B1 (en) 2012-02-16 2019-04-24 Genia Technologies, Inc. Methods for creating bilayers for use with nanopore sensors
US10246479B2 (en) 2012-04-09 2019-04-02 The Trustees Of Columbia University In The City Of New York Method of preparation of nanopore and uses thereof
GB2510719A (en) * 2012-06-15 2014-08-13 Genia Technologies Inc Chip set-up and high-accuracy nucleic acid sequencing
EP2864502B1 (en) * 2012-06-20 2019-10-23 The Trustees of Columbia University in the City of New York Nucleic acid sequencing by nanopore detection of tag molecules
US10648026B2 (en) 2013-03-15 2020-05-12 The Trustees Of Columbia University In The City Of New York Raman cluster tagged molecules for biological imaging
CN105102627B (zh) 2013-03-15 2018-10-19 纽约哥伦比亚大学理事会 用于检测样品中多种预定化合物的方法
KR102245192B1 (ko) * 2013-05-06 2021-04-29 온테라 인크. 나노포어를 이용한 표적 검출
ES2704902T3 (es) * 2013-05-06 2019-03-20 Two Pore Guys Inc Un método de detección de objetivos biológicos usando un nanoporo y un agente de unión a proteínas de fusión
WO2014190299A2 (en) * 2013-05-23 2014-11-27 Arizona Board Of Regents Acting For And On Behalf Of Arizona State University Chemistry, systems and methods of translocation of a polymer through a nanopore
US9322062B2 (en) * 2013-10-23 2016-04-26 Genia Technologies, Inc. Process for biosensor well formation
EP3640349A3 (en) 2013-10-23 2020-07-29 Roche Sequencing Solutions, Inc. High speed molecular sensing with nanopores
CA2943952A1 (en) 2014-03-24 2015-10-01 The Trustees Of Columbia University In The City Of New York Chemical methods for producing tagged nucleotides
CN106687574B (zh) * 2014-06-03 2021-06-29 亿明达股份有限公司 使用对纳米颗粒或纳米颗粒附近锚定的系链检测事件的组合物,系统和方法
SG10201809900PA (en) * 2014-07-31 2018-12-28 Illumina Inc Hybrid Nanopore Sensors
CA2966246C (en) 2014-10-31 2020-07-14 Genia Technologies, Inc. Alpha-hemolysin variants with altered characteristics
US10036739B2 (en) 2015-01-27 2018-07-31 Genia Technologies, Inc. Adjustable bilayer capacitance structure for biomedical devices
CN104651500B (zh) 2015-01-30 2017-06-30 华东理工大学 气单胞菌溶素纳米孔通道的制备方法及其应用
CA2974456A1 (en) 2015-02-02 2016-08-11 F. Hoffmann-La Roche Ag Polymerase variants
US9791432B2 (en) * 2015-03-20 2017-10-17 Genia Technologies, Inc. Serpentine flow channels for flowing fluids over chip sensors
TWI571626B (zh) * 2015-07-15 2017-02-21 力晶科技股份有限公司 具有奈米腔的集成生物感測器及其製作方法
US10174371B2 (en) 2015-08-05 2019-01-08 Genia Technologies, Inc. Use of titanium nitride as an electrode in non-faradaic electrochemical cell
US10809243B2 (en) 2015-08-31 2020-10-20 Roche Sequencing Solutions, Inc. Small aperture large electrode cell
WO2017050723A1 (en) 2015-09-22 2017-03-30 Genia Technologies, Inc. Pol7 polymerase variants
US10102338B2 (en) 2015-09-24 2018-10-16 Genia Technologies, Inc. Adaptive compression and modification of nanopore measurement data
EP3766987B1 (en) 2015-09-24 2023-08-02 F. Hoffmann-La Roche AG Alpha-hemolysin variants
US10935512B2 (en) 2015-09-24 2021-03-02 Roche Sequencing Solutions, Inc. Encoding state change of nanopore to reduce data size
CN108521782A (zh) * 2015-10-21 2018-09-11 豪夫迈·罗氏有限公司 含氟聚合物作为疏水层以支持用于纳米孔的脂质双层形成的用途
CN105368938B (zh) * 2015-11-06 2018-09-21 中国科学院重庆绿色智能技术研究院 一种基于电击穿在氮化硅薄膜上精确制备纳米孔的方法
US10718737B2 (en) * 2016-01-21 2020-07-21 Roche Sequencing Solutions, Inc. Molded flow channel
EP3423575B1 (en) 2016-02-29 2021-06-16 Genia Technologies, Inc. Exonuclease deficient polymerases
US10465240B2 (en) * 2016-03-30 2019-11-05 Roche Sequencing Solutions, Inc. Electrical enhancement of bilayer formation
EP3436602B1 (en) 2016-03-31 2024-08-14 Genia Technologies, Inc. Nanopore protein conjugates and uses thereof
WO2017184866A1 (en) 2016-04-21 2017-10-26 F. Hoffmann-La Roche Ag Alpha-hemolysin variants and uses thereof
WO2018001925A1 (en) 2016-06-27 2018-01-04 F. Hoffmann-La Roche Ag Osmotic imbalance methods for bilayer formation
EP3478706B1 (en) 2016-06-30 2022-02-09 F. Hoffmann-La Roche AG Long lifetime alpha-hemolysin nanopores
GB201612458D0 (en) * 2016-07-14 2016-08-31 Howorka Stefan And Pugh Genevieve Membrane spanning DNA nanopores for molecular transport
CN106443008A (zh) * 2016-08-31 2017-02-22 中国科学院重庆绿色智能技术研究院 一种基于固态纳米孔的hiv‑1蛋白酶检测方法
WO2018054970A2 (en) 2016-09-22 2018-03-29 F. Hoffmann-La Roche Ag Pol6 polymerase variants
US10975427B2 (en) 2017-01-20 2021-04-13 Omniome, Inc. Process for cognate nucleotide detection in a nucleic acid sequencing workflow
CN113755319A (zh) * 2017-02-14 2021-12-07 阿克斯比尔公司 用于大分子的连续诊断的设备和方法
EP3655423B1 (en) * 2017-07-17 2023-12-20 President and Fellows of Harvard College Nanopore-matched protein shuttle for molecular characterization
CA3079411C (en) 2017-10-19 2023-12-05 Omniome, Inc. Simultaneous background reduction and complex stabilization in binding assay workflows
WO2019081442A1 (en) * 2017-10-23 2019-05-02 F. Hoffmann-La Roche Ag REMOVAL AND REINTEGRATION OF PROTEIN NANOPORES IN A MEMBRANE USING AN OSMOTIC IMBALANCE
CN109709185B (zh) * 2017-10-25 2024-09-24 深圳宣泽生物医药有限公司 一种修饰生物探针的纳米孔检测装置及制作方法
WO2019158548A1 (en) 2018-02-15 2019-08-22 F. Hoffmann-La Roche Ag Nanopore protein conjugates for detection and analysis of analytes
EP3759123A1 (en) 2018-02-28 2021-01-06 F. Hoffmann-La Roche AG Alpha-hemolysin variants and uses thereof
CN111919118B (zh) * 2018-04-13 2025-09-05 豪夫迈·罗氏有限公司 用于检测和分析分析物的方法和组合物
CN112204154B (zh) 2018-05-28 2024-06-25 豪夫迈·罗氏有限公司 Dna-孔隙-聚合酶复合物的酶促富集
EP3815092A2 (en) 2018-06-29 2021-05-05 F. Hoffmann-La Roche AG Detection of microsatellite instability
ES3016009T3 (en) * 2018-12-11 2025-05-08 Hoffmann La Roche Systems and methods for self-limiting protein pore insertion in a membrane
JP7162283B2 (ja) * 2019-05-27 2022-10-28 国立大学法人山形大学 脂質二分子膜チャネル評価チップ及びその製造方法並びに評価装置
WO2021013805A1 (en) 2019-07-22 2021-01-28 F. Hoffmann-La Roche Ag Systems and methods for cell of origin determination from variant calling data
EP4003382A4 (en) * 2019-07-31 2023-10-11 Axbio Inc. SYSTEMS AND METHODS FOR EVALUATION OF A TARGET MOLECULE
US20220372566A1 (en) 2019-09-20 2022-11-24 Roche Sequencing Solutions, Inc. Immune repertoire profiling by primer extension target enrichment
EP4051778A4 (en) * 2019-10-30 2023-11-22 Stratos Genomics Inc. METHODS AND COMPOSITIONS FOR ASSEMBLING BIOLOGICAL NANOPORES
JP7520978B2 (ja) 2019-11-21 2024-07-23 エフ. ホフマン-ラ ロシュ アーゲー 次世代シーケンシングサンプルにおける汚染検出のためのシステムおよび方法
EP4158062B1 (en) 2020-05-28 2024-09-04 F. Hoffmann-La Roche AG Sequence alignment systems and methods to identify short motifs in high-error single-molecule reads
CA3191929A1 (en) * 2020-09-08 2022-03-17 Harold G. Monbouquette Lateral flow nucleic acid assay with integrated pore-based detection
CN114249294B (zh) * 2020-09-22 2025-07-04 上海新微技术研发中心有限公司 一种多层mems结构及其制作方法与应用
US12378596B2 (en) 2020-12-03 2025-08-05 Roche Sequencing Solutions, Inc. Whole transcriptome analysis in single cells
JP7646850B2 (ja) 2021-02-09 2025-03-17 エフ. ホフマン-ラ ロシュ アーゲー 核酸中のメチル化の塩基レベル検出のための方法
CN117062902A (zh) 2021-03-03 2023-11-14 豪夫迈·罗氏有限公司 用于从生物学样品中电泳提取核酸的装置和方法
CN115125098B (zh) * 2021-03-29 2025-05-27 上海近观科技有限责任公司 基于分子封层及加热密封结构的纳米孔检测装置及方法
CN117730155A (zh) 2021-05-24 2024-03-19 豪夫迈·罗氏有限公司 用于核酸杂交的增强子寡核苷酸
KR20240099447A (ko) 2021-12-07 2024-06-28 카리부 바이오사이언시스 인코포레이티드 Crispr 엔도뉴클레아제 절단 생성물을 포획하는 방법
CN114410459A (zh) * 2022-01-11 2022-04-29 深圳清华大学研究院 基因测序装置和测序方法
CN119403937A (zh) 2022-06-14 2025-02-07 豪夫迈·罗氏有限公司 表观遗传胞嘧啶修饰的检测
EP4573207A1 (en) 2022-08-18 2025-06-25 F. Hoffmann-La Roche AG Detection of epigenetic modifications
TWI862997B (zh) * 2022-09-30 2024-11-21 國立中興大學 微流體感測裝置、微流體感測系統及微流體感測方法
CN115651821B (zh) 2022-12-07 2023-04-07 北京齐碳科技有限公司 一种分子检测单元、芯片以及制备方法
CN116381250A (zh) * 2023-03-03 2023-07-04 南京大学 基于纳米孔道蛋白的高通量检测装置
EP4689180A1 (en) 2023-03-30 2026-02-11 F. Hoffmann-La Roche AG Modulation of target molecule-lipid bilayer interactions
WO2025024676A1 (en) 2023-07-26 2025-01-30 Caribou Biosciences, Inc. In vitro validation methods for cd19-targeting cell therapies
US20250161882A1 (en) * 2023-11-17 2025-05-22 Illumina, Inc. Fluidic devices, nanopore instruments, and methods
WO2025193609A1 (en) 2024-03-11 2025-09-18 Caribou Biosciences, Inc. Methods and compositions for cost-effective assessment of nucleic acid transcripts and isoforms in cells
WO2025221988A1 (en) 2024-04-17 2025-10-23 Roche Sequencing Solutions, Inc. Systems and methods for somatic small variant calling
WO2025221998A1 (en) 2024-04-17 2025-10-23 Roche Sequencing Solutions, Inc. Systems and methods for variant calling
WO2025231432A1 (en) 2024-05-03 2025-11-06 Caribou Biosciences, Inc. In vivo gene editing with crispr systems
WO2026039623A1 (en) 2024-08-14 2026-02-19 Roche Sequencing Solutions, Inc. Systems and methods for germline snv and indel variant calling
WO2026050617A1 (en) 2024-08-30 2026-03-05 Roche Sequencing Solutions, Inc. Systems and methods for clustering sequencing reads to identify pcr duplicates
WO2026055639A1 (en) 2024-09-06 2026-03-12 Cepheid Sample in sequencing-ready library out automated library preparation solution

Family Cites Families (30)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JPH07508342A (ja) * 1992-04-22 1995-09-14 エコール ポリテクニーク フェデラル ドゥ ローザンヌ(エーペーエフエル) 脂質膜センサー
US6413792B1 (en) * 2000-04-24 2002-07-02 Eagle Research Development, Llc Ultra-fast nucleic acid sequencing device and a method for making and using the same
US6952651B2 (en) * 2002-06-17 2005-10-04 Intel Corporation Methods and apparatus for nucleic acid sequencing by signal stretching and data integration
AU2004223493A1 (en) * 2003-02-28 2004-10-07 Brown University Nanopores, methods for using same, methods for making same and methods for characterizing biomolecules using same
US20050023156A1 (en) * 2003-07-30 2005-02-03 Ramsey J. Michael Nanostructured material transport devices and their fabrication by application of molecular coatings to nanoscale channels
US20050136408A1 (en) * 2003-12-19 2005-06-23 May Tom-Moy Methods and systems for characterizing a polymer
JP4953044B2 (ja) * 2005-05-09 2012-06-13 財団法人生産技術研究奨励会 脂質二重膜の形成方法およびその装置
CA2610027A1 (en) * 2005-05-26 2006-11-30 Ensemble Discovery Corporation Biodetection by nucleic acid-templated chemistry
WO2007047498A2 (en) * 2005-10-14 2007-04-26 The Regents Of The University Of California Formation and encapsulation of molecular bilayer and monolayer membranes
US7777505B2 (en) * 2006-05-05 2010-08-17 University Of Utah Research Foundation Nanopore platforms for ion channel recordings and single molecule detection and analysis
US20100196203A1 (en) * 2007-02-20 2010-08-05 Gurdial Singh Sanghera Formation of Lipid Bilayers
WO2008124107A1 (en) * 2007-04-04 2008-10-16 The Regents Of The University Of California Compositions, devices, systems, and methods for using a nanopore
GB0713402D0 (en) 2007-07-11 2007-08-22 Cardiff & Vale Nhs Trust A method of diagnosing a condition using a neural network
BRPI0813718A2 (pt) * 2007-07-13 2014-12-30 Univ Leland Stanford Junior Método e aparelho que utilizam um campo elétrico para ensaios biológicos aperfeiçoados
JP5441142B2 (ja) 2007-11-26 2014-03-12 国立大学法人 東京大学 マイクロ流体による平面脂質二重膜アレイ及びその平面脂質二重膜を用いた分析方法
GB2467479B (en) * 2007-11-30 2011-12-28 Electronic Bio Sciences Llc Method and apparatus for single side bilayer formation
GB0724736D0 (en) * 2007-12-19 2008-01-30 Oxford Nanolabs Ltd Formation of layers of amphiphilic molecules
US8628649B2 (en) * 2008-03-18 2014-01-14 Arizona Board Of Regents Acting For And On Behalf Of Arizona State University Nanopore and carbon nanotube based DNA sequencer and a serial recognition sequencer
WO2010082860A1 (en) * 2009-01-19 2010-07-22 Instituto De Biologia Experimental E Tecnologia (Ibet) Method and device for nanopore based single-molecule protein/ protein interaction detection
JP5372570B2 (ja) * 2009-03-30 2013-12-18 株式会社日立ハイテクノロジーズ ナノポアを用いたバイオポリマー決定方法、システム、及びキット
EP2483680A4 (en) * 2009-09-30 2014-01-01 Quantapore Inc ULTRASOUND SEQUENCING OF BIOLOGICAL POLYMERS WITH THE HELP OF A MARKED NANOPORE
CA2995178C (en) * 2010-02-08 2023-09-12 Genia Technologies, Inc. Method and system for forming a nanopore in a lipid bilayer
US8324914B2 (en) 2010-02-08 2012-12-04 Genia Technologies, Inc. Systems and methods for characterizing a molecule
US9605307B2 (en) * 2010-02-08 2017-03-28 Genia Technologies, Inc. Systems and methods for forming a nanopore in a lipid bilayer
EP3190193A1 (en) 2010-07-14 2017-07-12 The Curators Of The University Of Missouri Nanopore-facilitated single molecule detection of nucleic acids
WO2012088339A2 (en) 2010-12-22 2012-06-28 Genia Technologies, Inc. Nanopore-based single dna molecule characterization using speed bumps
US8968539B2 (en) * 2011-03-08 2015-03-03 Electronic Biosciences, Inc. Methods for voltage-induced protein incorporation into planar lipid bilayers
IN2014DN00221A (enExample) * 2011-07-25 2015-06-05 Oxford Nanopore Tech Ltd
EP2814983B1 (en) 2012-02-16 2019-04-24 Genia Technologies, Inc. Methods for creating bilayers for use with nanopore sensors
EP3532843B1 (en) * 2016-10-26 2020-11-18 F. Hoffmann-La Roche AG Multi-chip packaging of integrated circuits and flow cells for nanopore sequencing

Similar Documents

Publication Publication Date Title
Wu et al. A sensitive lateral flow biosensor for Escherichia coli O157: H7 detection based on aptamer mediated strand displacement amplification
JP2013521763A5 (enExample)
JP2016000057A5 (enExample)
JP2014239695A5 (enExample)
JP2010539966A5 (enExample)
JP2018075021A5 (enExample)
JP2014513557A5 (enExample)
JP2014508298A5 (enExample)
JP2010533200A5 (enExample)
JP2012501646A5 (enExample)
WO2016126871A3 (en) Sequencing of nucleic acids via barcoding in discrete entities
AU2017257624A1 (en) Hybridization chain reaction methods for in situ molecular detection
JP2016525344A5 (enExample)
JP2008245635A5 (enExample)
JP2015503917A5 (enExample)
JP2015513529A5 (enExample)
IL287810A (en) Kits for detecting one or more target nucleic acid analytes in a sample and methods of making and using the same
JP2014525584A5 (enExample)
WO2018069484A3 (en) Molecular detection and counting using nanopores
JP2023500485A5 (enExample)
JP2019023645A5 (enExample)
WO2018060739A3 (en) Assay for distinguishing between sepsis and systemic inflammatory response syndrome
CN103361422B (zh) 一种鉴别掺假肉及其制品的多重pcr快速检测方法
CN114207105A (zh) 用于检测核酸空间信息的阵列及检测方法
JP2013523824A5 (enExample)