JP2016512437A5 - - Google Patents

Download PDF

Info

Publication number
JP2016512437A5
JP2016512437A5 JP2016501984A JP2016501984A JP2016512437A5 JP 2016512437 A5 JP2016512437 A5 JP 2016512437A5 JP 2016501984 A JP2016501984 A JP 2016501984A JP 2016501984 A JP2016501984 A JP 2016501984A JP 2016512437 A5 JP2016512437 A5 JP 2016512437A5
Authority
JP
Japan
Prior art keywords
nucleic acid
amplicons
target nucleic
methylation specific
detection reagent
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
JP2016501984A
Other languages
English (en)
Other versions
JP2016512437A (ja
Filing date
Publication date
Application filed filed Critical
Priority claimed from PCT/US2014/025854 external-priority patent/WO2014160117A1/en
Publication of JP2016512437A publication Critical patent/JP2016512437A/ja
Publication of JP2016512437A5 publication Critical patent/JP2016512437A5/ja
Pending legal-status Critical Current

Links

Claims (15)

  1. a)標的核酸を、メチル化特異的検出試薬で処理すること、
    b)前記標的核酸内の複数の核酸セグメントを同時に増幅して、複数のアンプリコンを生成すること、および
    c)前記複数のアンプリコンを検出すること
    を含む方法。
  2. 前記標的核酸が、遺伝子のプロモーター領域である、請求項1に記載の方法。
  3. 前記メチル化特異的検出試薬が、亜硫酸水素塩である、請求項1または2に記載の方法。
  4. 前記同時増幅を、単一反応容器で実施する、請求項1から3のいずれか一項に記載の方法。
  5. 前記標的核酸が、CpGアイランドを含む、請求項1から4のいずれか一項に記載の方法。
  6. 前記検出が、リアルタイムPCR増幅および検出を含む、請求項1から5のいずれか一項に記載の方法
  7. 前記検出が、質量分析、配列決定およびハイブリダイゼーションからなる群から選択される核酸検出技術を含む、請求項1から5のいずれか一項に記載の方法。
  8. 前記複数のアンプリコンが少なくとも5個または10個のアンプリコンを含む、請求項1からのいずれか一項に記載の方法。
  9. 核酸を増幅する方法であって、
    a)メチル化特異的検出試薬で処理した標的核酸内の複数の核酸セグメントを同時に増幅して、複数のアンプリコンを生成すること、および
    b)前記複数のアンプリコンを検出すること
    を含む、核酸を増幅する方法。
  10. a)メチル化特異的検出試薬で標的核酸を処理すること、
    b)前記標的核酸内の複数の核酸セグメントを同時に増幅して、複数のアンプリコンを生成すること、および
    c)前記アンプリコンを複数の核酸プローブと接触させて、前記複数のアンプリコンを検出すること
    を含む方法。
  11. a)標的核酸の増幅のための複数のプライマーペア、
    b)前記複数のプライマーペアで増幅されたアンプリコンに特異的に結合する複数の核酸プローブ、および
    c)メチル化特異的検出試薬
    を含むキット。
  12. 検出可能な標識を含む、請求項11に記載のキット。
  13. 前記プローブ同じ標識を含む、請求項12に記載のキット。
  14. 前記標識が蛍光標識である、請求項12または13に記載のキット。
  15. 前記メチル化特異的試薬が亜硫酸水素塩である、請求項11から14のいずれか一項に記載のキット。
JP2016501984A 2013-03-14 2014-03-13 多重メチル化特異的増幅システムおよび方法 Pending JP2016512437A (ja)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201361782370P 2013-03-14 2013-03-14
US61/782,370 2013-03-14
PCT/US2014/025854 WO2014160117A1 (en) 2013-03-14 2014-03-13 Multiplex methylation-specific amplification systems and methods

Related Child Applications (1)

Application Number Title Priority Date Filing Date
JP2018244615A Division JP2019076100A (ja) 2013-03-14 2018-12-27 多重メチル化特異的増幅システムおよび方法

Publications (2)

Publication Number Publication Date
JP2016512437A JP2016512437A (ja) 2016-04-28
JP2016512437A5 true JP2016512437A5 (ja) 2017-03-30

Family

ID=51529804

Family Applications (2)

Application Number Title Priority Date Filing Date
JP2016501984A Pending JP2016512437A (ja) 2013-03-14 2014-03-13 多重メチル化特異的増幅システムおよび方法
JP2018244615A Withdrawn JP2019076100A (ja) 2013-03-14 2018-12-27 多重メチル化特異的増幅システムおよび方法

Family Applications After (1)

Application Number Title Priority Date Filing Date
JP2018244615A Withdrawn JP2019076100A (ja) 2013-03-14 2018-12-27 多重メチル化特異的増幅システムおよび方法

Country Status (5)

Country Link
US (2) US9701999B2 (ja)
EP (1) EP2971171A4 (ja)
JP (2) JP2016512437A (ja)
CN (1) CN105378107A (ja)
WO (1) WO2014160117A1 (ja)

Families Citing this family (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US11603555B2 (en) * 2015-06-15 2023-03-14 Cepheid Integrated purification and measurement of DNA methylation and co-measurement of mutations and/or MRNA expression levels in an automated reaction cartridge
CN108350485A (zh) 2015-10-30 2018-07-31 精密科学发展有限责任公司 血浆dna的多重扩增检测测定以及分离和检测
AU2017260630B2 (en) 2016-05-05 2023-07-13 Exact Sciences Corporation Detection of lung neoplasia by analysis of methylated DNA
MX2019006628A (es) 2016-12-12 2019-11-12 Cepheid Purificacion y medicion integradas de metilacion de adn y co-medicion de mutaciones y/o niveles de expresion de arnm en un cartucho de reaccion automatizado.
CN110475875A (zh) 2017-01-27 2019-11-19 精密科学发展有限责任公司 通过分析甲基化dna检测结肠瘤形成
US10648025B2 (en) 2017-12-13 2020-05-12 Exact Sciences Development Company, Llc Multiplex amplification detection assay II
US20230046033A1 (en) * 2019-09-16 2023-02-16 Exact Sciences Corporation Structure and temperature-dependent flap endonuclease substrates

Family Cites Families (71)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4965188A (en) 1986-08-22 1990-10-23 Cetus Corporation Process for amplifying, detecting, and/or cloning nucleic acid sequences using a thermostable enzyme
US4683202A (en) 1985-03-28 1987-07-28 Cetus Corporation Process for amplifying nucleic acid sequences
US4683195A (en) 1986-01-30 1987-07-28 Cetus Corporation Process for amplifying, detecting, and/or-cloning nucleic acid sequences
EP0232967B1 (en) 1986-01-10 1993-04-28 Amoco Corporation Competitive homogeneous assay
US4800159A (en) 1986-02-07 1989-01-24 Cetus Corporation Process for amplifying, detecting, and/or cloning nucleic acid sequences
US5283174A (en) 1987-09-21 1994-02-01 Gen-Probe, Incorporated Homogenous protection assay
US5130238A (en) 1988-06-24 1992-07-14 Cangene Corporation Enhanced nucleic acid amplification process
ATE141956T1 (de) 1989-07-11 1996-09-15 Gen Probe Inc Verfahren zur vervielfältigung von nukleinsäuresequenzen
CA2020958C (en) 1989-07-11 2005-01-11 Daniel L. Kacian Nucleic acid sequence amplification methods
US5455166A (en) 1991-01-31 1995-10-03 Becton, Dickinson And Company Strand displacement amplification
US5270184A (en) 1991-11-19 1993-12-14 Becton, Dickinson And Company Nucleic acid target generation
SE501439C2 (sv) 1993-06-22 1995-02-13 Pharmacia Lkb Biotech Sätt och anordning för analys av polynukleotidsekvenser
US5925517A (en) 1993-11-12 1999-07-20 The Public Health Research Institute Of The City Of New York, Inc. Detectably labeled dual conformation oligonucleotide probes, assays and kits
DE69417918T2 (de) 1993-11-30 2000-01-05 Univ Montreal Mcgill Dna methyltransferase inhibierung
US5714330A (en) 1994-04-04 1998-02-03 Lynx Therapeutics, Inc. DNA sequencing by stepwise ligation and cleavage
US5648211A (en) 1994-04-18 1997-07-15 Becton, Dickinson And Company Strand displacement amplification using thermophilic enzymes
US5641658A (en) 1994-08-03 1997-06-24 Mosaic Technologies, Inc. Method for performing amplification of nucleic acid with two primers bound to a single solid support
ATE226983T1 (de) 1994-08-19 2002-11-15 Pe Corp Ny Gekoppeltes ampflikation- und ligationverfahren
US5695934A (en) 1994-10-13 1997-12-09 Lynx Therapeutics, Inc. Massively parallel sequencing of sorted polynucleotides
JP3189000B2 (ja) 1994-12-01 2001-07-16 東ソー株式会社 特定核酸配列の検出方法
US5750341A (en) 1995-04-17 1998-05-12 Lynx Therapeutics, Inc. DNA sequencing by parallel oligonucleotide extensions
US5710029A (en) 1995-06-07 1998-01-20 Gen-Probe Incorporated Methods for determining pre-amplification levels of a nucleic acid target sequence from post-amplification levels of product
AU713667B2 (en) 1996-04-12 1999-12-09 Phri Properties, Inc. Detection probes, kits and assays
US5871917A (en) 1996-05-31 1999-02-16 North Shore University Hospital Research Corp. Identification of differentially methylated and mutated nucleic acids
US6017704A (en) 1996-06-03 2000-01-25 The Johns Hopkins University School Of Medicine Method of detection of methylated nucleic acid using agents which modify unmethylated cytosine and distinguishing modified methylated and non-methylated nucleic acids
US5786146A (en) 1996-06-03 1998-07-28 The Johns Hopkins University School Of Medicine Method of detection of methylated nucleic acid using agents which modify unmethylated cytosine and distinguishing modified methylated and non-methylated nucleic acids
GB9620209D0 (en) 1996-09-27 1996-11-13 Cemu Bioteknik Ab Method of sequencing DNA
GB9626815D0 (en) 1996-12-23 1997-02-12 Cemu Bioteknik Ab Method of sequencing DNA
US6969488B2 (en) 1998-05-22 2005-11-29 Solexa, Inc. System and apparatus for sequential processing of analytes
US6511803B1 (en) 1997-10-10 2003-01-28 President And Fellows Of Harvard College Replica amplification of nucleic acid arrays
WO1999019341A1 (en) 1997-10-10 1999-04-22 President & Fellows Of Harvard College Replica amplification of nucleic acid arrays
US6485944B1 (en) 1997-10-10 2002-11-26 President And Fellows Of Harvard College Replica amplification of nucleic acid arrays
DE19754482A1 (de) 1997-11-27 1999-07-01 Epigenomics Gmbh Verfahren zur Herstellung komplexer DNA-Methylierungs-Fingerabdrücke
EP1092047B1 (en) 1998-07-02 2009-08-26 Gen-Probe Incorporated Molecular torches
US6787308B2 (en) 1998-07-30 2004-09-07 Solexa Ltd. Arrayed biomolecules and their use in sequencing
AR021833A1 (es) 1998-09-30 2002-08-07 Applied Research Systems Metodos de amplificacion y secuenciacion de acido nucleico
US6303305B1 (en) 1999-03-30 2001-10-16 Roche Diagnostics, Gmbh Method for quantification of an analyte
US6331393B1 (en) 1999-05-14 2001-12-18 University Of Southern California Process for high-throughput DNA methylation analysis
DE60014762T2 (de) 1999-05-24 2005-10-13 Tosoh Corp., Shinnanyo Methode zum Nachweis von Ribonukleinsäuren
US7501245B2 (en) 1999-06-28 2009-03-10 Helicos Biosciences Corp. Methods and apparatuses for analyzing polynucleotide sequences
US6818395B1 (en) 1999-06-28 2004-11-16 California Institute Of Technology Methods and apparatus for analyzing polynucleotide sequences
EP1218543A2 (en) 1999-09-29 2002-07-03 Solexa Ltd. Polynucleotide sequencing
DE19959691A1 (de) * 1999-12-06 2001-08-16 Epigenomics Ag Verfahren zur parallelen Detektions des Methylierungszustandes von genomischer DNA
DE10010280B4 (de) 2000-02-25 2006-08-10 Epigenomics Ag Verfahren zur Detektion von Cytosin-Methylierung in DNA Proben
CN100462433C (zh) 2000-07-07 2009-02-18 维西根生物技术公司 实时序列测定
US6706162B1 (en) 2000-09-25 2004-03-16 Applera Corporation High speed, high resolution compositions, methods, and kits for capillary electrophoresis
AR031640A1 (es) 2000-12-08 2003-09-24 Applied Research Systems Amplificacion isotermica de acidos nucleicos en un soporte solido
US20030027135A1 (en) 2001-03-02 2003-02-06 Ecker David J. Method for rapid detection and identification of bioagents
US7668697B2 (en) 2006-02-06 2010-02-23 Andrei Volkov Method for analyzing dynamic detectable events at the single molecule level
US7250098B2 (en) 2001-09-28 2007-07-31 Applera Corporation Multi-capillary array electrophoresis device
DE10215770A1 (de) 2002-04-10 2003-10-30 Michael Giesing Verfahren zum Nachweis methylierter und/oder nichtmethylierter Cytosine in Nukleinsäuren, dessen Verwendung sowie entsprechende Analysekits
AU2003290433A1 (en) 2002-12-25 2004-07-22 Combimatrix K.K. Nucleic acid methylation detection process using an internal reference sample
CA2513889A1 (en) 2003-01-29 2004-08-19 454 Corporation Double ended sequencing
JP2006525027A (ja) 2003-05-01 2006-11-09 ジェン−プロウブ インコーポレイテッド 分子スイッチを含むオリゴヌクレオチド
WO2005042713A2 (en) * 2003-10-28 2005-05-12 The Johns Hopkins University Quantitative multiplex methylation-specific pcr
US7169560B2 (en) 2003-11-12 2007-01-30 Helicos Biosciences Corporation Short cycle methods for sequencing polynucleotides
DE602005026730D1 (de) 2004-08-27 2011-04-14 Gen Probe Inc Einfach-Primernukleinsäuren-Erweiterungsverfahren
WO2006056478A1 (en) * 2004-11-29 2006-06-01 Klinikum Der Universität Regensburg Kits and methods for detecting methylated dna
US7482120B2 (en) 2005-01-28 2009-01-27 Helicos Biosciences Corporation Methods and compositions for improving fidelity in a nucleic acid synthesis reaction
EP1844162B1 (en) 2005-02-01 2014-10-15 Applied Biosystems, LLC Method for identifying a sequence in a polynucleotide
WO2007032748A1 (en) 2005-09-15 2007-03-22 Agency For Science, Technology & Research Method for detecting dna methylation
US7282337B1 (en) 2006-04-14 2007-10-16 Helicos Biosciences Corporation Methods for increasing accuracy of nucleic acid sequencing
US20080241951A1 (en) 2006-07-20 2008-10-02 Visigen Biotechnologies, Inc. Method and apparatus for moving stage detection of single molecular events
US8262900B2 (en) 2006-12-14 2012-09-11 Life Technologies Corporation Methods and apparatus for measuring analytes using large scale FET arrays
EP2653861B1 (en) 2006-12-14 2014-08-13 Life Technologies Corporation Method for sequencing a nucleic acid using large-scale FET arrays
US9290803B2 (en) 2007-04-12 2016-03-22 University Of Southern California DNA methylation analysis by digital bisulfite genomic sequencing and digital methylight
WO2008157696A2 (en) 2007-06-19 2008-12-24 Stratos Genomics Inc. High throughput nucleic acid sequencing by expansion
US20100301398A1 (en) 2009-05-29 2010-12-02 Ion Torrent Systems Incorporated Methods and apparatus for measuring analytes
US20100137143A1 (en) 2008-10-22 2010-06-03 Ion Torrent Systems Incorporated Methods and apparatus for measuring analytes
US20110091882A1 (en) 2009-10-02 2011-04-21 Ibis Biosciences, Inc. Determination of methylation status of polynucleotides
CN102424857B (zh) 2011-12-30 2013-11-27 陕西北美基因股份有限公司 一种Taqman水解探针以及定量检测MGMT甲基化程度的方法

Similar Documents

Publication Publication Date Title
JP2016512437A5 (ja)
JP2015156872A5 (ja)
JP2016195614A5 (ja)
ES2610461T3 (es) Método de detección de nucleótidos únicos
SA516371691B1 (ar) Dna طرق وتركيبات لتحديد صورة تحليلية لـ
WO2016154337A3 (en) Method for identification and enumeration of nucleic acid sequences
JP2019528704A5 (ja)
RU2017101353A (ru) Набор или устройство для обнаружения рака пищевода и способ обнаружения
ATE549419T1 (de) Verfahren und zusammensetzungen für die universelle grössenspezifische polymerasekettenreaktion
RU2017101174A (ru) Набор или устройство для обнаружения рака печени и способ обнаружения
NZ701145A (en) Compositions and methods for quantifying a nucleic acid sequence in a sample
WO2016059473A3 (en) Sequence conversion and signal amplifier dna having locked nucleic acids and detection methods using same
BR112016029907A2 (pt) enriquecimento geneticamente adaptado e reação em cadeia da polimerase para a rápida detecção de microrganismos".
WO2018089945A8 (en) Polynucleotides for the amplification and detection of neisseria gonorrhoeae
NZ732886A (en) Amplification and detection of nucleic acids in a biological sample
JP2017501733A5 (ja)
EA201491821A1 (ru) Модифицированные олигонуклеотиды, включающие тиольные функциональные группы, и их применение для детекции нуклеиновых кислот
WO2015153571A3 (en) Detection of dna methylation using combined nuclease ligation reactions
JP2014083052A5 (ja)
WO2016073255A8 (en) Detection of hiv-1 nucleic acids by reverse-transcription loop-mediated isothermal amplication
MY182821A (en) Kit for together detecting multiple target nucleic acids differing from each other and detection method using the same
JP2014003946A5 (ja)
WO2015127201A8 (en) Hiv-2 nucleic acids and methods of detection
EP3342876A3 (en) Methods for detecting gastrointestinal pathogen nucleic acid
MX2019011503A (es) Composiciones de cebador y métodos multiplex para detectar la presencia de listeria.