DE60131284D1 - Methode zum nachweis von mikroorganismen - Google Patents

Methode zum nachweis von mikroorganismen

Info

Publication number
DE60131284D1
DE60131284D1 DE60131284T DE60131284T DE60131284D1 DE 60131284 D1 DE60131284 D1 DE 60131284D1 DE 60131284 T DE60131284 T DE 60131284T DE 60131284 T DE60131284 T DE 60131284T DE 60131284 D1 DE60131284 D1 DE 60131284D1
Authority
DE
Germany
Prior art keywords
sample
target sequence
present
universal target
microorganisms
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Expired - Lifetime
Application number
DE60131284T
Other languages
English (en)
Other versions
DE60131284T2 (de
Inventor
Neil Hunter
Nicholas Anthony Jacques
Fjelda Elizabeth Martin
Mangala Aniruddha Nadkarni
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
University of Sydney
Original Assignee
University of Sydney
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by University of Sydney filed Critical University of Sydney
Publication of DE60131284D1 publication Critical patent/DE60131284D1/de
Application granted granted Critical
Publication of DE60131284T2 publication Critical patent/DE60131284T2/de
Anticipated expiration legal-status Critical
Expired - Lifetime legal-status Critical Current

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
DE60131284T 2000-07-28 2001-07-27 Methode zum nachweis von mikroorganismen Expired - Lifetime DE60131284T2 (de)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
AUPQ909000 2000-07-28
AUPQ9090A AUPQ909000A0 (en) 2000-07-28 2000-07-28 A method of detecting microorganisms
PCT/AU2001/000933 WO2002010444A1 (en) 2000-07-28 2001-07-27 A method of detecting microorganisms

Publications (2)

Publication Number Publication Date
DE60131284D1 true DE60131284D1 (de) 2007-12-20
DE60131284T2 DE60131284T2 (de) 2008-09-04

Family

ID=3823148

Family Applications (1)

Application Number Title Priority Date Filing Date
DE60131284T Expired - Lifetime DE60131284T2 (de) 2000-07-28 2001-07-27 Methode zum nachweis von mikroorganismen

Country Status (9)

Country Link
US (1) US7303870B2 (de)
EP (1) EP1311706B1 (de)
JP (1) JP5139620B2 (de)
AT (1) ATE377656T1 (de)
AU (3) AUPQ909000A0 (de)
CA (1) CA2417419A1 (de)
DE (1) DE60131284T2 (de)
NZ (1) NZ524496A (de)
WO (1) WO2002010444A1 (de)

Families Citing this family (85)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
RU2329305C2 (ru) * 2001-03-01 2008-07-20 Дзе Джонс Хопкинс Юниверсити Количественный анализ, позволяющий одновременно обнаруживать и идентифицировать бактериальные инфекции
US7666588B2 (en) 2001-03-02 2010-02-23 Ibis Biosciences, Inc. Methods for rapid forensic analysis of mitochondrial DNA and characterization of mitochondrial DNA heteroplasmy
US7226739B2 (en) 2001-03-02 2007-06-05 Isis Pharmaceuticals, Inc Methods for rapid detection and identification of bioagents in epidemiological and forensic investigations
US20040121335A1 (en) 2002-12-06 2004-06-24 Ecker David J. Methods for rapid detection and identification of bioagents associated with host versus graft and graft versus host rejections
US20030027135A1 (en) 2001-03-02 2003-02-06 Ecker David J. Method for rapid detection and identification of bioagents
WO2004060278A2 (en) 2002-12-06 2004-07-22 Isis Pharmaceuticals, Inc. Methods for rapid identification of pathogens in humans and animals
US8073627B2 (en) 2001-06-26 2011-12-06 Ibis Biosciences, Inc. System for indentification of pathogens
US7217510B2 (en) 2001-06-26 2007-05-15 Isis Pharmaceuticals, Inc. Methods for providing bacterial bioagent characterizing information
ES2193873B1 (es) * 2002-03-22 2004-08-16 Carlos Muñoz Ruiz Metodo para la deteccion de presencia bacteriana en un sujeto.
WO2004046375A2 (en) * 2002-11-20 2004-06-03 Pharmacia Italia S.P.A. Method for the detection of microorganisms in pharmaceutical products
EP1473370A3 (de) * 2003-04-24 2005-03-09 BioMerieux, Inc. Gattungs-, gruppen-, art- und/oder stammspezifische 16S rDNA-Sequenzen
US8057993B2 (en) 2003-04-26 2011-11-15 Ibis Biosciences, Inc. Methods for identification of coronaviruses
US7964343B2 (en) 2003-05-13 2011-06-21 Ibis Biosciences, Inc. Method for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture
US8158354B2 (en) 2003-05-13 2012-04-17 Ibis Biosciences, Inc. Methods for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture
US20120122096A1 (en) 2003-09-11 2012-05-17 Rangarajan Sampath Compositions for use in identification of bacteria
US8546082B2 (en) 2003-09-11 2013-10-01 Ibis Biosciences, Inc. Methods for identification of sepsis-causing bacteria
US8097416B2 (en) 2003-09-11 2012-01-17 Ibis Biosciences, Inc. Methods for identification of sepsis-causing bacteria
US8163895B2 (en) 2003-12-05 2012-04-24 Ibis Biosciences, Inc. Compositions for use in identification of orthopoxviruses
JP2005229838A (ja) * 2004-02-17 2005-09-02 Sapporo Breweries Ltd 偏性嫌気性グラム陰性菌の検出・識別方法
US7666592B2 (en) 2004-02-18 2010-02-23 Ibis Biosciences, Inc. Methods for concurrent identification and quantification of an unknown bioagent
EP2458619B1 (de) 2004-05-24 2017-08-02 Ibis Biosciences, Inc. Massenspektrometrie mit selektivem Ionfilter durch digitale Schwelle
US20050266411A1 (en) 2004-05-25 2005-12-01 Hofstadler Steven A Methods for rapid forensic analysis of mitochondrial DNA
JP3916086B2 (ja) * 2004-06-29 2007-05-16 ソニー株式会社 ハイブリダイゼーションなどの相互作用を検出する方法及び検出部、該検出部を備えるバイオアッセイ用基板、ハイブリダイゼーションなどの相互作用を検出する装置、並びに試薬キット
US7811753B2 (en) 2004-07-14 2010-10-12 Ibis Biosciences, Inc. Methods for repairing degraded DNA
US7662562B2 (en) 2004-08-10 2010-02-16 Becton, Dickinson And Company Method for rapid identification of microorganisms
KR100763906B1 (ko) * 2004-12-23 2007-10-05 삼성전자주식회사 9 종의 박테리아의 표적 서열을 특이적으로 증폭할 수 있는 프라이머 세트 및 상기 9 종의 박테리아 중 각 표적 서열에 특이적으로 혼성화하는 프로브 올리고뉴클레오티드
CN101111596A (zh) * 2005-01-31 2008-01-23 株式会社益力多本社 以rRNA为标的的微生物定量分析方法
WO2006094238A2 (en) 2005-03-03 2006-09-08 Isis Pharmaceuticals, Inc. Compositions for use in identification of adventitious viruses
US8084207B2 (en) 2005-03-03 2011-12-27 Ibis Bioscience, Inc. Compositions for use in identification of papillomavirus
WO2007014045A2 (en) 2005-07-21 2007-02-01 Isis Pharmaceuticals, Inc. Methods for rapid identification and quantitation of nucleic acid variants
US8609829B2 (en) 2005-10-17 2013-12-17 Gen-Probe Incorporated Compositions and methods to detect Legionella pneumophila nucleic acid
EP1937847A2 (de) * 2005-10-17 2008-07-02 Gen-Probe Incorporated Zusammensetzungen und verfahren zum nachweis von legionella pneumophila-nukleinsäure
US20070269813A1 (en) * 2005-11-03 2007-11-22 Dewhirst Floyd E Methods and arrays for identifying human microflora
WO2007114507A1 (en) * 2006-03-31 2007-10-11 Canon Kabushiki Kaisha Probe, probe set, probe-immobilized carrier, and genetic testing method
WO2007118222A2 (en) 2006-04-06 2007-10-18 Ibis Biosciences, INC Compositions for the use in identification of fungi
US7452700B2 (en) * 2006-04-14 2008-11-18 Pioneer Hi-Bred International, Inc. Methods for identifying novel pesticidal gene homologues
US7771941B2 (en) * 2006-06-23 2010-08-10 University Of South Florida Method for determining the specific growth rate of distinct microbial populations in a non-homogeneous system
EP2046991B1 (de) * 2006-07-21 2010-01-13 Pioneer Hi-Bred International Inc. Verfahren zur identifizierung neuer gene
AT504194B1 (de) 2006-09-07 2008-07-15 Oesterr Rotes Kreuz Bakteriennachweis
WO2008143627A2 (en) 2006-09-14 2008-11-27 Ibis Biosciences, Inc. Targeted whole genome amplification method for identification of pathogens
US8871471B2 (en) 2007-02-23 2014-10-28 Ibis Biosciences, Inc. Methods for rapid forensic DNA analysis
AU2008201391A1 (en) * 2007-03-30 2008-10-16 Gc Corporation A method for measuring the number of oral lactobacillus, and a PCR primers-probe set used for the same
EP1997906A1 (de) * 2007-06-01 2008-12-03 Friesland Brands B.V. Lactobacillus
WO2008151023A2 (en) 2007-06-01 2008-12-11 Ibis Biosciences, Inc. Methods and compositions for multiple displacement amplification of nucleic acids
CA2711265A1 (en) * 2008-02-08 2009-08-13 Colgate-Palmolive Company Assessment of oral cavity bioflora
EP2271771A2 (de) * 2008-04-01 2011-01-12 Metametrix Clinical Laboratory Verfahren und methode zur beobachtung der mikroflora des magen-darm-trakts
US8550694B2 (en) 2008-09-16 2013-10-08 Ibis Biosciences, Inc. Mixing cartridges, mixing stations, and related kits, systems, and methods
US8148163B2 (en) 2008-09-16 2012-04-03 Ibis Biosciences, Inc. Sample processing units, systems, and related methods
EP2344893B1 (de) 2008-09-16 2014-10-15 Ibis Biosciences, Inc. Mikroplatten-handhabungssysteme und verfahren
WO2010057069A1 (en) 2008-11-14 2010-05-20 Gen-Probe Incorporated Compositions, kits and methods for detection campylobacter nucleic acid
EP2396803A4 (de) 2009-02-12 2016-10-26 Ibis Biosciences Inc Ionisationssondenanordnungen
WO2010104798A1 (en) 2009-03-08 2010-09-16 Ibis Biosciences, Inc. Bioagent detection methods
WO2010114842A1 (en) 2009-03-30 2010-10-07 Ibis Biosciences, Inc. Bioagent detection systems, devices, and methods
US9194877B2 (en) 2009-07-17 2015-11-24 Ibis Biosciences, Inc. Systems for bioagent indentification
WO2011008971A1 (en) 2009-07-17 2011-01-20 Ibis Biosciences, Inc. Lift and mount apparatus
WO2011014811A1 (en) 2009-07-31 2011-02-03 Ibis Biosciences, Inc. Capture primers and capture sequence linked solid supports for molecular diagnostic tests
EP3098325A1 (de) 2009-08-06 2016-11-30 Ibis Biosciences, Inc. Basenzusammensetzungen ohne massenbestimmung zur nukleinsäureerkennung
US9890408B2 (en) 2009-10-15 2018-02-13 Ibis Biosciences, Inc. Multiple displacement amplification
GB2475226A (en) 2009-11-03 2011-05-18 Genetic Analysis As Universal Prokaryote 16S ribosome PCR primer pair
CA2782692C (en) * 2009-12-03 2021-11-09 Quest Diagnostics Investments Incorporated Methods for the diagnosis of bacterial vaginosis
EP3604558B1 (de) 2010-02-17 2022-10-12 Gen-Probe Incorporated Zusammensetzungen und verfahren zum nachweis von atopobium-vaginae-nukleinsäure
WO2011115840A2 (en) 2010-03-14 2011-09-22 Ibis Biosciences, Inc. Parasite detection via endosymbiont detection
KR101158647B1 (ko) * 2010-05-27 2012-06-26 울산대학교 산학협력단 이중 실시간 중합효소연쇄반응법과 융해곡선분석을 이용하는 결핵균과 항산성비결핵균의 검출 방법
US20130005593A1 (en) * 2011-03-09 2013-01-03 Teles Flavia R F RNA-Oligonucleotide Quantification Technique for the Enumeration of Uncultivated Bacterial Species
WO2013101935A1 (en) * 2011-12-27 2013-07-04 Ibis Biosciences, Inc. Bioagent detection oligonucleotides
KR101497977B1 (ko) * 2012-07-04 2015-03-11 서울대학교산학협력단 총세균 검출용 dna 탐침자
US10174373B2 (en) 2012-10-18 2019-01-08 Idexx Laboratories, Inc. Nucleic acid amplification controls and kits and methods of use thereof
CN103088145B (zh) * 2013-01-25 2014-10-08 中国海洋大学 一种紫云蛤科贝类线粒体16S rRNA基因的扩增引物
US20140258299A1 (en) * 2013-03-07 2014-09-11 Boris A. Vinatzer Method for Assigning Similarity-Based Codes to Life Form and Other Organisms
WO2014165810A2 (en) 2013-04-05 2014-10-09 Akins Robert A Systems and methods to assess microbiomes and treatments thereof
KR102084217B1 (ko) * 2013-07-24 2020-03-03 솔젠트 (주) 중합효소연쇄반응 및 실시간중합효소연쇄반응을 이용한 세포치료제 또는 생물학적 의약품에 오염되는 세균을 검출하는 방법 및 이 방법에 사용하기 위한 키트
MX2016000997A (es) * 2013-07-25 2016-04-19 Dch Molecular Diagnostics Inc Metodos y composiciones para detectar contaminacion bacteriana.
CN104419703B (zh) * 2013-09-11 2017-10-24 中国科学院上海生命科学研究院 一种高通量快速检测常见致病菌的方法
JP6299660B2 (ja) * 2014-05-12 2018-03-28 三菱ケミカル株式会社 菌叢解析方法と菌叢解析用デバイス
US10428370B2 (en) * 2016-09-15 2019-10-01 Sun Genomics, Inc. Universal method for extracting nucleic acid molecules from a diverse population of one or more types of microbes in a sample
US11959125B2 (en) 2016-09-15 2024-04-16 Sun Genomics, Inc. Universal method for extracting nucleic acid molecules from a diverse population of one or more types of microbes in a sample
KR102640361B1 (ko) * 2017-05-17 2024-02-23 마이크로바이오 피티와이 엘티디 바이오마커 및 그의 용도
CN108690864A (zh) * 2017-10-31 2018-10-23 中山大学 一种粪便样本中菌群稳态评价方法及在结直肠癌筛查中的应用
WO2019088272A1 (ja) 2017-11-02 2019-05-09 三菱ケミカル株式会社 臨床的指標と関連性のある細菌群の情報を利用した口腔内検査方法
US20190292608A1 (en) * 2018-03-26 2019-09-26 Buckman Laboratories International, Inc. Methods To Quantify Bioburden In Substances
CN111378557B (zh) 2018-12-26 2023-06-06 财团法人工业技术研究院 用于产生液珠的管状结构及液珠产生方法
CN112280840A (zh) * 2020-09-29 2021-01-29 杭州迪安医学检验中心有限公司 一种分枝杆菌检测鉴定的试剂盒及其检测方法
CN112626244B (zh) * 2020-12-30 2022-03-29 山东省眼科研究所 眼科临床微生物快速检测用探针、芯片、引物、试剂盒和应用
WO2022261365A1 (en) * 2021-06-11 2022-12-15 Alfred E. Mann Institute For Biomedical Engineering At The University Of Southern California Primers and methods for microbial detection and quantification of porphyromonas in a sample
CN113658640B (zh) * 2021-07-14 2023-07-28 北京大学 一种淡水生态系统健康评价方法

Family Cites Families (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
BR9206705A (pt) * 1991-11-01 1995-11-21 Adelaide Children S Hospital Processo de amplificação de fase sólida
DE19732086C2 (de) * 1997-07-25 2002-11-21 Univ Leipzig Verfahren zur quantitativen Bestimmung von Eubakterien
US5985569A (en) * 1997-09-26 1999-11-16 Becton, Dickinson And Company Primers for amplification of a genus specific sequence of the mycobacterium 16S rRNA gene
DE19822108A1 (de) * 1998-05-12 2000-02-03 Schering Ag Verfahren zur Detektion von Mikroorganismen in Produkten, insbesondere in Arzneimitteln und Kosmetika

Also Published As

Publication number Publication date
US20040072242A1 (en) 2004-04-15
EP1311706B1 (de) 2007-11-07
ATE377656T1 (de) 2007-11-15
EP1311706A1 (de) 2003-05-21
WO2002010444A1 (en) 2002-02-07
NZ524496A (en) 2004-07-30
AU7618001A (en) 2002-02-13
JP5139620B2 (ja) 2013-02-06
CA2417419A1 (en) 2002-02-07
US7303870B2 (en) 2007-12-04
EP1311706A4 (de) 2004-11-03
DE60131284T2 (de) 2008-09-04
AUPQ909000A0 (en) 2000-08-24
AU2001276180B2 (en) 2007-05-10
JP2004504069A (ja) 2004-02-12

Similar Documents

Publication Publication Date Title
DE60131284D1 (de) Methode zum nachweis von mikroorganismen
Anuj et al. Identification of Pseudomonas aeruginosa by a duplex real-time polymerase chain reaction assay targeting the ecfX and the gyrB genes
Meays et al. Source tracking fecal bacteria in water: a critical review of current methods
Maukonen et al. Methodologies for the characterization of microbes in industrial environments: a review
CN106755424A (zh) 一种基于crispr的大肠杆菌st131系菌株检测引物、试剂盒及检测方法
Lawson et al. Detection of campylobacter in gastroenteritis: comparison of direct PCR assay of faecal samples with selective culture
NO326359B1 (no) Fremgangsmate ved pavisning av forskjellige nukleotidsekvenser i en enkelt prove samt sett for utforelse av fremgangsmaten
CN104232783B (zh) 牛种布氏菌弱毒疫苗株a19的快速检测方法
Ramirez et al. Development of a sensitive detection system for Cryptosporidium in environmental samples
JP5610416B2 (ja) バイオオーグメンテーションにおける環境影響の評価方法
WO1995033854B1 (en) Use of a specific marker for detection of salmonella with pcr
Osek et al. Listeria monocytogenes in foods—From culture identification to whole‐genome characteristics
Kageyama et al. Yersinia pseudotuberculosis infection in breeding monkeys: detection and analysis of strain diversity by PCR
Yousef Detection of bacterial pathogens in different matrices: Current practices and challenges
JP2003061675A (ja) セレノモナス属菌検出のための核酸プローブ、およびビール混濁細菌の検出方法
Oh et al. Simultaneous identification of seven foodborne pathogens and Escherichia coli (Pathogenic and Nonpathogenic) using capillary electrophoresis–based single-strand conformation polymorphism coupled with multiplex PCR
US20170081709A1 (en) Method for detecting escherichia coli and carrier for detecting escherichia coli
Petrisor et al. Microbial forensics
Salati et al. A sensitive FRET probe assay for the selective detection of Mycobacterium marinum in fish
Manome et al. Quantification of potato common scab pathogens in soil by quantitative competitive PCR with fluorescent quenching‐based probes
ATE431432T1 (de) Verfahren zum nachweis von mycobacterium tuberculosis
JP2005065605A (ja) 微生物群集の解析方法
JP2005006556A (ja) ビール有害菌の検出方法
Saha et al. Quantitative real-time PCR detection of Pseudomonas oleovorans subsp. lubricantis using TaqMan-MGB assay in contaminated metalworking fluids
JP2009254358A (ja) 炭化水素分解菌の挙動解析方法及び土壌浄化方法

Legal Events

Date Code Title Description
8364 No opposition during term of opposition