JP5628390B2 - 生物試料を処理するための方法 - Google Patents
生物試料を処理するための方法 Download PDFInfo
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- JP5628390B2 JP5628390B2 JP2013173652A JP2013173652A JP5628390B2 JP 5628390 B2 JP5628390 B2 JP 5628390B2 JP 2013173652 A JP2013173652 A JP 2013173652A JP 2013173652 A JP2013173652 A JP 2013173652A JP 5628390 B2 JP5628390 B2 JP 5628390B2
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- 239000000344 soap Substances 0.000 description 1
- AJPJDKMHJJGVTQ-UHFFFAOYSA-M sodium dihydrogen phosphate Chemical compound [Na+].OP(O)([O-])=O AJPJDKMHJJGVTQ-UHFFFAOYSA-M 0.000 description 1
- 239000000600 sorbitol Substances 0.000 description 1
- 125000006850 spacer group Chemical group 0.000 description 1
- 210000003802 sputum Anatomy 0.000 description 1
- 208000024794 sputum Diseases 0.000 description 1
- 210000004895 subcellular structure Anatomy 0.000 description 1
- 150000005846 sugar alcohols Chemical class 0.000 description 1
- 230000001629 suppression Effects 0.000 description 1
- 238000000672 surface-enhanced laser desorption--ionisation Methods 0.000 description 1
- 238000001356 surgical procedure Methods 0.000 description 1
- 231100000378 teratogenic Toxicity 0.000 description 1
- 230000003390 teratogenic effect Effects 0.000 description 1
- 230000001225 therapeutic effect Effects 0.000 description 1
- 239000003440 toxic substance Substances 0.000 description 1
- 230000002110 toxicologic effect Effects 0.000 description 1
- 231100000027 toxicology Toxicity 0.000 description 1
- PFURGBBHAOXLIO-PHDIDXHHSA-N trans-cyclohexane-1,2-diol Chemical compound O[C@@H]1CCCC[C@H]1O PFURGBBHAOXLIO-PHDIDXHHSA-N 0.000 description 1
- 230000007704 transition Effects 0.000 description 1
- 229960002622 triacetin Drugs 0.000 description 1
- DQWPFSLDHJDLRL-UHFFFAOYSA-N triethyl phosphate Chemical compound CCOP(=O)(OCC)OCC DQWPFSLDHJDLRL-UHFFFAOYSA-N 0.000 description 1
- QXJQHYBHAIHNGG-UHFFFAOYSA-N trimethylolethane Chemical compound OCC(C)(CO)CO QXJQHYBHAIHNGG-UHFFFAOYSA-N 0.000 description 1
- FAKLAEQNIGOLGL-UHFFFAOYSA-N undecane-1,2,11-triol Chemical compound OCCCCCCCCCC(O)CO FAKLAEQNIGOLGL-UHFFFAOYSA-N 0.000 description 1
- LONLGEZTBVAKJF-UHFFFAOYSA-N undecane-1,2,3-triol Chemical compound CCCCCCCCC(O)C(O)CO LONLGEZTBVAKJF-UHFFFAOYSA-N 0.000 description 1
- BUMVVNKGNPPUME-UHFFFAOYSA-N undecane-1,2-diol Chemical compound CCCCCCCCCC(O)CO BUMVVNKGNPPUME-UHFFFAOYSA-N 0.000 description 1
- 239000004034 viscosity adjusting agent Substances 0.000 description 1
Classifications
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L3/00—Containers or dishes for laboratory use, e.g. laboratory glassware; Droppers
- B01L3/50—Containers for the purpose of retaining a material to be analysed, e.g. test tubes
- B01L3/508—Containers for the purpose of retaining a material to be analysed, e.g. test tubes rigid containers not provided for above
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N1/00—Sampling; Preparing specimens for investigation
- G01N1/28—Preparing specimens for investigation including physical details of (bio-)chemical methods covered elsewhere, e.g. G01N33/50, C12Q
- G01N1/30—Staining; Impregnating ; Fixation; Dehydration; Multistep processes for preparing samples of tissue, cell or nucleic acid material and the like for analysis
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N1/00—Sampling; Preparing specimens for investigation
- G01N1/28—Preparing specimens for investigation including physical details of (bio-)chemical methods covered elsewhere, e.g. G01N33/50, C12Q
- G01N1/30—Staining; Impregnating ; Fixation; Dehydration; Multistep processes for preparing samples of tissue, cell or nucleic acid material and the like for analysis
- G01N1/31—Apparatus therefor
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L2300/00—Additional constructional details
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- Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
- Y10T—TECHNICAL SUBJECTS COVERED BY FORMER US CLASSIFICATION
- Y10T436/00—Chemistry: analytical and immunological testing
- Y10T436/10—Composition for standardization, calibration, simulation, stabilization, preparation or preservation; processes of use in preparation for chemical testing
- Y10T436/107497—Preparation composition [e.g., lysing or precipitation, etc.]
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- Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
- Y10T—TECHNICAL SUBJECTS COVERED BY FORMER US CLASSIFICATION
- Y10T436/00—Chemistry: analytical and immunological testing
- Y10T436/10—Composition for standardization, calibration, simulation, stabilization, preparation or preservation; processes of use in preparation for chemical testing
- Y10T436/108331—Preservative, buffer, anticoagulant or diluent
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- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
- Y10T—TECHNICAL SUBJECTS COVERED BY FORMER US CLASSIFICATION
- Y10T436/00—Chemistry: analytical and immunological testing
- Y10T436/25—Chemistry: analytical and immunological testing including sample preparation
- Y10T436/2525—Stabilizing or preserving
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Description
i)生物試料を提供する、および
(α1)1から最大100重量%、特に好ましくは少なくとも5重量%、より好ましくは少なくとも10重量%、さらにより好ましくは少なくとも25重量%、特に好ましくは少なくとも35重量%および非常に好ましくは少なくとも50重量%、たとえば少なくとも1、2、3、4、5、6、7、8、9、10、11、12、13、14、15、16、17、18、19、20、21、22、23、24、25、26、27、28、29、30、31、32、33、34、35、36、37、38、39、40、41、42、43、44、45、46、47、48、49、50、51、52、53、54、55、56、57、58、59、60、61、62、63、64、65、66、67、68、69、70、71、72、73、74、75、76、77、78、79、80、81、82、83、84、85、86、87、88、89、90、91、92、93、94、95、96、97、98または99重量%の、少なくとも一つのポリオール、および
(α2)0から99重量%、好ましくは0から95重量%、特に好ましくは0.1から50重量%、さらにより好ましくは0.5から25重量%、より好ましくは1から15重量%および非常に好ましくは2.5から10重量%、たとえば最大0.1、0.2、0.3、0.4、0.5、0.6、0.7、0.8、0.9、1.0、1.1、1.2、1.3、1.4、1.5、1.6、1.7、1.8、1.9、2.0、2.1、2.2、2.3、2.4、2.5、2.6、2.7、2.8、2.9、3.0、3.1、3.2、3.3、3.4、3.5、3.6、3.7、3.8、3.9、4.0、4.1、4.2、4.3、4.4、4.5、4.6、4.7、4.8、4.9、5.0、5.1、5.2、5.3、5.4、5.5、5.6、5.7、5.8、5.9、6.0、6.1、6.2、6.3、6.4、6.5、6.6、6.7、6.8、6.9、7.0、7.1、7.2、7.3、7.4、7.5、7.6、7.7、7.8、7.9、8.0、8.1、8.2、8.3、8.4、8.5、8.6、8.7、8.8、8.9、9.0、9.1、9.2、9.3、9.4、9.5、9.6、9.7、9.8、9.9、10.0、11、12、13、14、15、16、17、18、19、20、21、22、23、24、25、26、27、28、29、30、31、32、33、34、35、36、37、38、39、40、41、42、43、44、45、46、47、48、49、50、51、52、53、54、55、56、57、58、59、60、61、62、63、64、65、66、67、68、69、70、71、72、73、74、75、76、77、78、79、80、81、82、83、84、85、86、87、88、89、90、91、92、93、94、95または99重量%の、少なくとも一つの添加剤,
ここで成分(α1)および(α2)の合計は100重量%の量になる。
iv)組成物と接触させられた生物試料の組織学的分析、または、組成物と接触させられた生物試料中の、またはそれに由来する、生体分子の分析、
を行うのがさらに好ましい可能性があり、
ここでこの方法段階iv)はまた、必要に応じて、上記の方法段階iii)に記載の保存の前または後に実施されうる。
(β1)液体を充填レベルhまで受け入れるための少なくとも一つのポートを有する少なくとも一つの容器、
(β2)少なくとも一つのポートを密閉するための少なくとも一つの蓋、
(β3)蓋(β2)の少なくとも一つに結合されている少なくとも一つの浸漬補助具、および
(β4)軸Lについて回転可能に配置され、および少なくとも一つの容器(β1)内の液体を混合するための案内羽根を含む混合装置
を含む、生物試料を処理するための第一の装置もまた、始めに言及された目標を達成するのに貢献する。
(β1)充填レベルhまで液体を受容するための少なくとも一つのポートを有しおよび断面積A容器を有する少なくとも一つの容器、ここで容器は少なくとも一つのポリオールおよび必要に応じて少なくとも一つの添加剤を含む本発明に記載の方法に関連して記載される組成物で、充填レベルhまで満たされる、
(β2)少なくとも一つのポートを密閉するための少なくとも一つの蓋、および
(β5)断面積A体部を有し、容器(β1)または蓋(β2)と結合されていない、および容器内に位置し、比A体部/A容器が好ましくは約0.02ないし0.95%、特に好ましくは約0.1ないし0.9%および非常に好ましくは約0.2ないし0.5%の範囲にある、少なくとも一つの体部
を含む、生物試料を処理するための第二の装置もさらに、上述の目標を達成するのに貢献する。
(γ2)当業者がこの組成物を受容するのに適すると判断する、上記の装置のうちの一つまたは別の容器、好ましくは密閉可能な容器、たとえばグライナー(Greiner)チューブ、ファルコン(Falcon)チューブ、エッペンドルフ(Eppendorf)ベッセルまたは公報US6,602,718、US2004/0043505A1、US2005/0160701A1、US2003/0086830A1、US2003/0087423A1またはWO2005/014173A1に記載される容器のうちの一つ
を含むキットは、さらに、始めに言及された目的を達成するのに貢献する。
(γ3)生物試料中のまたはそれに由来する生体分子を分析するための、または生物試料の形態を分析するための試薬
を含むキットは、さらに、始めに言及された目的を達成するのに貢献する。
(γ2)この組成物を受容するのに適すると当業者が判断する、上記の装置のうちの一つまたは別の容器、好ましくは密閉可能な容器、および
(γ3)生物試料中のまたはそれに由来する生体分子を分析するための、または生物試料の形態を分析するための試薬
を含むキットは、さらに、始めに言及された目的を達成するのに貢献する。
(σ1)方法段階i)、ii)およびiv)を含む本発明に記載の方法による生物試料の分析を含む診断方法による疾患の診断、および
(σ2)診断された疾患の治療的処置
を含む、疾患を治療する方法もまた、始めに言及された目的を達成するのに貢献する。
臓器の摘出直後、ラット肝臓組織を、各例で表1に詳細を示す組成物1mlを用いて処理し、および1日間25℃のインキュベーター内で保存した。保存後、組織片を溶液から取り出し、プラスチック箱に移し、および、従来の手順後、エタノール上昇系列中でおよびキシレン中でインキュベートし、およびパラフィンに包埋する。ミクロトームを用いて、パラフィン包埋組織から切片を調製し、およびこれらの切片をスライドグラス上でヘマトキシリン−エオシンを用いて従来の方法で染色する。染色された組織切片を光学顕微鏡下で観察する。結果を表1にまとめる:
この実験のために、25%1,2,3−プロパントリオールおよび75%3−メチル−1,3,5−ペンタントリオールおよびパラホルムアルデヒド飽和水溶液(交差活性化添加剤)から構成される組成物を調製する。最終組成物を調製するために、トリオール混合物の90容量%をパラホルムアルデヒド溶液の10容量%と混合する。
臓器の摘出直後、ラット肝臓組織を、各例で異なる溶液1ml(表2参照)を用いて処理し、および室温にて最長28日間および4〜8℃にて冷蔵庫で最長3ヶ月保存した。保存後、RNAを保存試料から単離する。
添加剤を含む組成物のRNA安定化特性を試験するために、異なる量のパラホルムアルデヒドを含む組成物を、実施例1aに記載の通りに調製する(表2a参照)。臓器の摘出直後、ラット肝臓組織を各例で最終組成物1.5mlを用いて処理し、および3日間室温にて保存する。その後、RNAを実施例2に記載される方法にしたがって単離する。各例で3試料を試験する。
臓器の摘出直後、ラット肝臓組織を1mlの組成物a)25%3−メチル−1,2,5−ペンタントリオールおよび75%1,2,6−ヘキサントリオールを用いて処理し、および4〜8℃にて冷蔵庫で最大12ヶ月保存する。同様に、ラット腎臓組織を1mlの組成物b)25%1,2,3−プロパントリオールおよび75%3−メチル−1,2,5−ペンタントリオールを用いて処理しおよび保存する。
臓器の摘出直後、ラット肺組織を、各例で異なる溶液1ml(表3参照)を用いて処理し、および6日間25℃にて保存した。保存後、DNAを保存試料から単離する。
臓器の摘出直後、ラット肝臓組織を、各例で異なるトリオール1ml(表4参照)を用いて処理し、および、2日間および7日間25℃にてインキュベーター内で保存した。保存後、保存試料からのタンパク質抽出物を調製する。ラットからの摘出後に液体窒素中で直接凍結されおよび以後−80℃にて保存されている肝臓組織を対照として用いる。
臓器の摘出直後、ラット肝臓組織を、各例で異なるトリオール1ml(表5参照)を用いて処理し、および2日間4〜8℃にて冷蔵庫に保存する。臓器の摘出直後に液体窒素中で凍結されておりおよび−80℃にて凍結保存された組織が、陽性対照として用いられる。
臓器の摘出直後、ラット肝臓組織を各例で、25%3−メチル−1,2,5−ペンタントリオールおよび75%1,2,6−ヘキサントリオールの組成物1.5mlで処理し、および最大6ヶ月25℃にてインキュベーター内で、または2〜8℃にて冷蔵庫で保存する。タンパク質抽出物を保存試料から表5aに示す時点に調製する。
臓器の摘出直後、ラット腎臓組織を、各例で25%3−メチル−1,2,5−ペンタントリオールおよび75%1,2,6−ヘキサントリオールの組成物1.5mlで処理し、および7日間25℃にてインキュベーター内で保存する。臓器の摘出後に液体窒素中で直ちに凍結されおよび−80℃にて保存されている組織試料を対照として用いる。保存後、タンパク質抽出物を調製する。
臓器の摘出直後、ラット腎臓組織を、各例で1mlの1,2,4−ブタントリオール(1)、3−メチル−1,3,5−ペンタントリオール(2)、1,2,6−ヘキサントリオール(3)、および75%1,2,3−プロパントリオールおよび25%1,2,6−ヘキサントリオールの混合物(4)で処理し、および1日間40℃にて、または2時間50℃にてインキュベーター内で保存した。
臓器の摘出直後、ラット脾臓組織を各例で1mlの1,2,3,4,5−ペンタンペントール(飽和水溶液)(1)、1,2,3,4,5,6−ヘキサンヘキサオール(4.72M水溶液)(2)または1,2,3−プロパントリオール(3)で処理し、および1日間25℃にてインキュベーター内で(a)、または3日間4〜8℃にて冷蔵庫で保存(b)した。
精製された逆転写酵素であるキアゲン社(QIAGEN)の「オムニスクリプト(Omniscript)」酵素を用いて、安定化試薬は単離されたタンパク質を安定化するのに適していることを証明した。
臓器の摘出直後、ラット脾臓組織を、各例で表7に示す組成物1mlを用いて処理し、および7日間25℃にて保存した。その後、これらの試料からRNAを実施例2に記載の方法に従って単離する。
臓器の摘出直後、ラット肝臓組織を液体窒素中で凍結しおよび次いで液体窒素中で保存した。各例でこれらの試料20から50mgを、次いで各例で1mlの表8に示す組成物と共にインキュベートし、および3日間4から8℃にて保存した。その後、このように前処理された試料からRNAを実施例2に記載の通り単離した。結果を表8に示す。
生物からの生物試料の採取は、細胞でのストレス反応を引き起こす。遺伝子発現プロファイルは、まずRNA分解によって、しかし次にまた新しい転写物の合成の誘導によって、直ちに変化し始める。生物試料の本発明に記載の処理は、したがって、分解だけでなく、誘導もまた防がなければならない。本発明に従った試料の処理による誘導の即時防止を検出するために、臓器の摘出直後のラット肺組織を、25%3−メチル−1,3,5−ペンタントリオールおよび75%1,2,6−ヘキサントリオールから成る組成物1mlを用いて処理し、および2時間、4時間および24時間25℃にて保存する。PBSを用いて処理しおよび等しく保存した組織試料、および臓器の摘出後に直ちに液体窒素中で凍結しおよび−80℃にて保存した組織試料を対照とする。その後、RNAを実施例2に記載の方法に従って単離する。
Claims (19)
- 組織学的分析及び生体分子の分析の両方を使用用途として、生物試料の組織及び生体分子を同時に安定化するための方法であって、次の方法段階を含む、生物試料を処理する方法、
i)生物試料を提供する段階、
ii)前記生物試料をC6−トリオール、またはC3−C6トリオールからなる群から選択される少なくとも二つのトリオールの混合物を含む組成物と前記生物試料全体が含浸するように接触させる段階、
iii)ii)の段階の後、前記生物試料を保存する段階
ここで前記組成物は、
(α1)前記C6−トリオール、または前記C3−C6トリオールからなる群から選択される少なくとも二つのトリオールの混合物に加え、
(α2)一価アルコール(モノオール)、ケトン、ジメチルスルホキシド、芳香族炭化水素、ハロゲン化炭化水素、エーテル、カルボン酸、カルボキサミド、ニトリル、ニトロアルカンおよびエステルを含む群から選択されるポリオール以外の有機溶媒である添加剤を含み、(α1)および(α2)の合計が100重量%に等しく、前記(α1)が、90から最大100重量%の少なくとも一つのトリオールであり、前記(α2)が、0から10重量%の少なくとも一つの添加剤である。 - 生物試料が凍結生物試料である、請求項1に記載の方法。
- 生物試料が非凍結生物試料である、請求項1に記載の方法。
- 生物試料を組成物と接触させるのが、−80℃ないし+80℃の範囲の温度にて実施される、請求項1から3のいずれかに記載の方法。
- 生物試料を組成物と接触させるのが、0℃ないし+80℃の範囲の温度にて実施される、請求項1から3のいずれかに記載の方法。
- 方法段階iii)が、組成物と接触させた生物試料の、−80℃ないし+80℃の範囲の温度で保存する、請求項1から5のいずれかに記載の方法。
- 組成物と接触させた生物試料の保存が、0℃ないし+80℃の範囲の温度にて実施される、請求項6に記載の方法。
- 方法段階iii)の後、iv)組成物と接触させた生物試料中のまたはそれに由来する生体分子を分析する段階を含む、請求項1から7のいずれかに記載の方法。
- 方法段階iv)が組織学的分析および生体分子の分析との両方を含む、請求項8に記載の方法。
- 方法段階iv)がタンパク質の分析および核酸の分析の両方を含む、請求項8または請求項9に記載の方法。
- 生物試料が、生物、単離細胞、オルガネラ、細菌、真菌、または真菌の一部、ウイルス、ウイロイド、プリオン、組織、組織断片、組織切片、体液、天然の、随意的に単離された、タンパク質、合成または修飾タンパク質、天然の、随意的に単離された、核酸、合成または修飾核酸、他の生体分子たとえば脂質、糖質、代謝産物および代謝体、植物または植物の一部、糞便、塗沫標本、穿刺液、食品試料、環境試料、法医学試料を含む、請求項1から10のいずれかに記載の方法。
- 請求項1から11のいずれかに記載の生物試料を処理する方法に用いるキットであって、
(γ1)前記組成物、ならびに
(β1)前記組成物を充填レベルhまで受け入れるための少なくとも一つのポートを有する少なくとも一つの容器(1)、
(β2)少なくとも一つのポートを密閉するための少なくとも一つの蓋(2)、
(β3)蓋(β2)の少なくとも一つに結合されている少なくとも一つの浸漬補助具(3)、および
(β4)軸Lについて回転可能に配置され、および少なくとも一つの容器(β1)内の前記組成物を混合するための案内羽根(4)を含む混合装置、を含むキット。 - 充填レベルhが容器(β1)の全高Hの50から80%に達する、請求項12に記載のキット。
- 浸漬補助具(β3)が容器の断面にまたがる、請求項12または請求項13に記載のキット。
- 浸漬補助具(β3)が混合装置(β4)の成分である、請求項12から14のいずれかに記載のキット。
- 浸漬補助具(β3)が生物試料用の少なくとも一つの受容手段を含む、請求項12から15のいずれかに記載のキット。
- 浸漬補助具(β3)が少なくとも一つの蓋(β2)と一体化して接続されている、請求項12から16のいずれかに記載のキット。
- 請求項1から11のいずれかに記載の生物試料を処理する方法に用いるキットであって、
(γ1)前記組成物、ならびに
(β1)充填レベルhまで前記組成物を受容するための少なくとも一つのポートを有する少なくとも一つの容器(1)、ここで容器は前記組成物で充填レベルhまで満たされる、
(β2)少なくとも一つのポートを密閉するための少なくとも一つの蓋(2)、および
(β5)容器(β1)または蓋(β2)と結合されていない、および容器(β1)内に位置する、少なくとも一つの体部(7)
を含む装置、を含むキット。 - (γ3)生物試料中のまたはそれに由来する生体分子を分析するための、または生物試料の形態を分析するための、試薬をさらに含む請求項12から18のいずれかに記載のキット。
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