JP2003516710A5 - - Google Patents
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- JP2003516710A5 JP2003516710A5 JP2000541335A JP2000541335A JP2003516710A5 JP 2003516710 A5 JP2003516710 A5 JP 2003516710A5 JP 2000541335 A JP2000541335 A JP 2000541335A JP 2000541335 A JP2000541335 A JP 2000541335A JP 2003516710 A5 JP2003516710 A5 JP 2003516710A5
- Authority
- JP
- Japan
- Prior art keywords
- dna
- probe
- labeling
- analysis
- minutes
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Granted
Links
- 239000000523 sample Substances 0.000 description 43
- 108020004414 DNA Proteins 0.000 description 35
- 238000002372 labelling Methods 0.000 description 28
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- 238000004458 analytical method Methods 0.000 description 22
- 230000003321 amplification Effects 0.000 description 16
- 238000003199 nucleic acid amplification method Methods 0.000 description 16
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 16
- 239000011324 bead Substances 0.000 description 13
- LFQSCWFLJHTTHZ-UHFFFAOYSA-N Ethanol Chemical compound CCO LFQSCWFLJHTTHZ-UHFFFAOYSA-N 0.000 description 12
- FAPWRFPIFSIZLT-UHFFFAOYSA-M Sodium chloride Chemical compound [Na+].[Cl-] FAPWRFPIFSIZLT-UHFFFAOYSA-M 0.000 description 12
- 241000192701 Microcystis Species 0.000 description 11
- 239000000243 solution Substances 0.000 description 11
- QKNYBSVHEMOAJP-UHFFFAOYSA-N 2-amino-2-(hydroxymethyl)propane-1,3-diol;hydron;chloride Chemical compound Cl.OCC(N)(CO)CO QKNYBSVHEMOAJP-UHFFFAOYSA-N 0.000 description 10
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- 108020005187 Oligonucleotide Probes Proteins 0.000 description 6
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- ZRALSGWEFCBTJO-UHFFFAOYSA-N Guanidine Chemical compound NC(N)=N ZRALSGWEFCBTJO-UHFFFAOYSA-N 0.000 description 4
- 102000004160 Phosphoric Monoester Hydrolases Human genes 0.000 description 4
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- 235000011178 triphosphate Nutrition 0.000 description 4
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- UNXRWKVEANCORM-UHFFFAOYSA-N triphosphoric acid Chemical compound OP(O)(=O)OP(O)(=O)OP(O)(O)=O UNXRWKVEANCORM-UHFFFAOYSA-N 0.000 description 4
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- OAKPWEUQDVLTCN-NKWVEPMBSA-N 2',3'-Dideoxyadenosine-5-triphosphate Chemical compound C1=NC=2C(N)=NC=NC=2N1[C@H]1CC[C@@H](CO[P@@](O)(=O)O[P@](O)(=O)OP(O)(O)=O)O1 OAKPWEUQDVLTCN-NKWVEPMBSA-N 0.000 description 2
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- 241000191358 Chlorobium sp. Species 0.000 description 2
- HEDRZPFGACZZDS-UHFFFAOYSA-N Chloroform Chemical compound ClC(Cl)Cl HEDRZPFGACZZDS-UHFFFAOYSA-N 0.000 description 2
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- 241000192710 Microcystis aeruginosa Species 0.000 description 2
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- CHJJGSNFBQVOTG-UHFFFAOYSA-N N-methyl-guanidine Natural products CNC(N)=N CHJJGSNFBQVOTG-UHFFFAOYSA-N 0.000 description 2
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- JLCPHMBAVCMARE-UHFFFAOYSA-N [3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methyl [5-(6-aminopurin-9-yl)-2-(hydroxymethyl)oxolan-3-yl] hydrogen phosphate Polymers Cc1cn(C2CC(OP(O)(=O)OCC3OC(CC3OP(O)(=O)OCC3OC(CC3O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c3nc(N)[nH]c4=O)C(COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3CO)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cc(C)c(=O)[nH]c3=O)n3cc(C)c(=O)[nH]c3=O)n3ccc(N)nc3=O)n3cc(C)c(=O)[nH]c3=O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)O2)c(=O)[nH]c1=O JLCPHMBAVCMARE-UHFFFAOYSA-N 0.000 description 2
- HDRRAMINWIWTNU-NTSWFWBYSA-N [[(2s,5r)-5-(2-amino-6-oxo-3h-purin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl] phosphono hydrogen phosphate Chemical compound C1=2NC(N)=NC(=O)C=2N=CN1[C@H]1CC[C@@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)O1 HDRRAMINWIWTNU-NTSWFWBYSA-N 0.000 description 2
- 238000000246 agarose gel electrophoresis Methods 0.000 description 2
- 229940043376 ammonium acetate Drugs 0.000 description 2
- 235000019257 ammonium acetate Nutrition 0.000 description 2
- 239000007864 aqueous solution Substances 0.000 description 2
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- URGJWIFLBWJRMF-JGVFFNPUSA-N ddTTP Chemical compound O=C1NC(=O)C(C)=CN1[C@@H]1O[C@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)CC1 URGJWIFLBWJRMF-JGVFFNPUSA-N 0.000 description 2
- 238000011161 development Methods 0.000 description 2
- 229960000633 dextran sulfate Drugs 0.000 description 2
- 239000013024 dilution buffer Substances 0.000 description 2
- SWSQBOPZIKWTGO-UHFFFAOYSA-N dimethylaminoamidine Natural products CN(C)C(N)=N SWSQBOPZIKWTGO-UHFFFAOYSA-N 0.000 description 2
- 239000003651 drinking water Substances 0.000 description 2
- 235000020188 drinking water Nutrition 0.000 description 2
- 239000007788 liquid Substances 0.000 description 2
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- 230000005298 paramagnetic effect Effects 0.000 description 2
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- 229940016590 sarkosyl Drugs 0.000 description 2
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- 230000035945 sensitivity Effects 0.000 description 2
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- 229910052709 silver Inorganic materials 0.000 description 2
- 239000004332 silver Substances 0.000 description 2
- 235000020183 skimmed milk Nutrition 0.000 description 2
- KSAVQLQVUXSOCR-UHFFFAOYSA-M sodium lauroyl sarcosinate Chemical compound [Na+].CCCCCCCCCCCC(=O)N(C)CC([O-])=O KSAVQLQVUXSOCR-UHFFFAOYSA-M 0.000 description 2
- 241000894007 species Species 0.000 description 2
- 229920000936 Agarose Polymers 0.000 description 1
- 241001479434 Agfa Species 0.000 description 1
- 108091093088 Amplicon Proteins 0.000 description 1
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- SRUWWOSWHXIIIA-UKPGNTDSSA-N Cyanoginosin Chemical compound N1C(=O)[C@H](CCCN=C(N)N)NC(=O)[C@@H](C)[C@H](C(O)=O)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)C(=C)N(C)C(=O)CC[C@H](C(O)=O)N(C)C(=O)[C@@H](C)[C@@H]1\C=C\C(\C)=C\[C@H](C)[C@@H](O)CC1=CC=CC=C1 SRUWWOSWHXIIIA-UKPGNTDSSA-N 0.000 description 1
- 241000531083 Dolichospermum lemmermannii Species 0.000 description 1
- 241000186394 Eubacterium Species 0.000 description 1
- 241000015869 Gracila Species 0.000 description 1
- 241001316831 Microcystis aeruginosa NIVA-CYA 143 Species 0.000 description 1
- 206010028980 Neoplasm Diseases 0.000 description 1
- 241000192673 Nostoc sp. Species 0.000 description 1
- 238000010222 PCR analysis Methods 0.000 description 1
- ISWSIDIOOBJBQZ-UHFFFAOYSA-N Phenol Chemical compound OC1=CC=CC=C1 ISWSIDIOOBJBQZ-UHFFFAOYSA-N 0.000 description 1
- 241000048846 Planktothrix agardhii NIVA-CYA 29 Species 0.000 description 1
- 108020001027 Ribosomal DNA Proteins 0.000 description 1
- 231100000570 acute poisoning Toxicity 0.000 description 1
- 238000013459 approach Methods 0.000 description 1
- 238000003556 assay Methods 0.000 description 1
- 230000001580 bacterial effect Effects 0.000 description 1
- 230000000711 cancerogenic effect Effects 0.000 description 1
- 231100000315 carcinogenic Toxicity 0.000 description 1
- 239000007795 chemical reaction product Substances 0.000 description 1
- 210000003763 chloroplast Anatomy 0.000 description 1
- 238000004140 cleaning Methods 0.000 description 1
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- 230000002380 cytological effect Effects 0.000 description 1
- 239000005546 dideoxynucleotide Substances 0.000 description 1
- 230000000694 effects Effects 0.000 description 1
- 230000007613 environmental effect Effects 0.000 description 1
- ZMMJGEGLRURXTF-UHFFFAOYSA-N ethidium bromide Chemical compound [Br-].C12=CC(N)=CC=C2C2=CC=C(N)C=C2[N+](CC)=C1C1=CC=CC=C1 ZMMJGEGLRURXTF-UHFFFAOYSA-N 0.000 description 1
- 229960005542 ethidium bromide Drugs 0.000 description 1
- 238000011156 evaluation Methods 0.000 description 1
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- 238000013213 extrapolation Methods 0.000 description 1
- 238000012252 genetic analysis Methods 0.000 description 1
- 230000002068 genetic effect Effects 0.000 description 1
- 238000010438 heat treatment Methods 0.000 description 1
- 231100000334 hepatotoxic Toxicity 0.000 description 1
- 230000003082 hepatotoxic effect Effects 0.000 description 1
- 210000001990 heterocyst Anatomy 0.000 description 1
- 238000005286 illumination Methods 0.000 description 1
- 238000007901 in situ hybridization Methods 0.000 description 1
- 238000003780 insertion Methods 0.000 description 1
- 230000037431 insertion Effects 0.000 description 1
- 210000004185 liver Anatomy 0.000 description 1
- 239000012139 lysis buffer Substances 0.000 description 1
- 238000005259 measurement Methods 0.000 description 1
- 238000002844 melting Methods 0.000 description 1
- 230000008018 melting Effects 0.000 description 1
- 108010067094 microcystin Proteins 0.000 description 1
- 238000007431 microscopic evaluation Methods 0.000 description 1
- 230000000877 morphologic effect Effects 0.000 description 1
- 230000019612 pigmentation Effects 0.000 description 1
- 231100000683 possible toxicity Toxicity 0.000 description 1
- 238000012545 processing Methods 0.000 description 1
- 230000006798 recombination Effects 0.000 description 1
- 238000005215 recombination Methods 0.000 description 1
- 238000011160 research Methods 0.000 description 1
- 235000019515 salmon Nutrition 0.000 description 1
- 238000005464 sample preparation method Methods 0.000 description 1
- 238000012216 screening Methods 0.000 description 1
- 238000010561 standard procedure Methods 0.000 description 1
- 239000013076 target substance Substances 0.000 description 1
- 238000012360 testing method Methods 0.000 description 1
- 238000004448 titration Methods 0.000 description 1
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| GB9807045.1 | 1998-04-01 | ||
| GBGB9807045.1A GB9807045D0 (en) | 1998-04-01 | 1998-04-01 | Nucleic acid detection method |
| PCT/GB1999/001025 WO1999050448A2 (en) | 1998-04-01 | 1999-04-01 | Nucleic acid detection method |
Publications (3)
| Publication Number | Publication Date |
|---|---|
| JP2003516710A JP2003516710A (ja) | 2003-05-20 |
| JP2003516710A5 true JP2003516710A5 (cg-RX-API-DMAC7.html) | 2009-06-18 |
| JP4481491B2 JP4481491B2 (ja) | 2010-06-16 |
Family
ID=10829712
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2000541335A Expired - Lifetime JP4481491B2 (ja) | 1998-04-01 | 1999-04-01 | 核酸の検出方法 |
Country Status (11)
| Country | Link |
|---|---|
| US (2) | US6617138B1 (cg-RX-API-DMAC7.html) |
| EP (1) | EP1068352B1 (cg-RX-API-DMAC7.html) |
| JP (1) | JP4481491B2 (cg-RX-API-DMAC7.html) |
| CN (1) | CN100381576C (cg-RX-API-DMAC7.html) |
| AT (1) | ATE377091T1 (cg-RX-API-DMAC7.html) |
| AU (1) | AU769566B2 (cg-RX-API-DMAC7.html) |
| CA (1) | CA2325052C (cg-RX-API-DMAC7.html) |
| DE (1) | DE69937447T2 (cg-RX-API-DMAC7.html) |
| GB (1) | GB9807045D0 (cg-RX-API-DMAC7.html) |
| NO (1) | NO326359B1 (cg-RX-API-DMAC7.html) |
| WO (1) | WO1999050448A2 (cg-RX-API-DMAC7.html) |
Families Citing this family (27)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| DE10012540B4 (de) * | 2000-03-15 | 2004-09-23 | Vermicon Ag | Oligonukleotide und Verfahren zum spezifischen Nachweis von Mikroorganismen durch Polymerase-Kettenreaktion |
| US7732138B2 (en) * | 2001-11-07 | 2010-06-08 | Diagcor Bioscience Incorporation Limited | Rapid genotyping analysis and the device thereof |
| EP1624820B1 (en) * | 2003-05-17 | 2011-11-16 | Depuy International Limited | An intramedullary nail assembly |
| FI20030771A7 (fi) * | 2003-05-21 | 2004-11-22 | Helsingin Yliopisto | Menetelmä toksisten syanobakteerien määrittämiseksi |
| US7338763B2 (en) | 2004-06-02 | 2008-03-04 | Eppendorf Array Technologies S.A. | Method and kit for the detection and/or quantification of homologous nucleotide sequences on arrays |
| US20060057611A1 (en) | 2004-06-30 | 2006-03-16 | Applera Corporation | Log-linear amplification |
| FR2873388B1 (fr) * | 2004-07-23 | 2012-04-06 | Biomerieux Sa | Procede de marquage et de purification d'acides nucleiques d'interet presents dans un echantillon biologique a traiter dans un unique recipient reactionnel |
| AU2006213692C1 (en) * | 2005-02-09 | 2011-08-04 | Pacific Biosciences Of California, Inc. | Nucleotide compositions and uses thereof |
| US7897337B2 (en) | 2005-03-10 | 2011-03-01 | Gen-Probe Incorporated | Method for performing multi-formatted assays |
| WO2006128230A1 (en) * | 2005-05-31 | 2006-12-07 | Newsouth Innovations Pty Limited | Detection of hepatotoxic cyanobacteria |
| CN102171367A (zh) * | 2008-10-01 | 2011-08-31 | 皇家飞利浦电子股份有限公司 | 在载体上测试核酸并对其质量控制的方法 |
| GB2475226A (en) | 2009-11-03 | 2011-05-18 | Genetic Analysis As | Universal Prokaryote 16S ribosome PCR primer pair |
| US9046507B2 (en) | 2010-07-29 | 2015-06-02 | Gen-Probe Incorporated | Method, system and apparatus for incorporating capacitive proximity sensing in an automated fluid transfer procedure |
| GB201021397D0 (en) | 2010-12-16 | 2011-01-26 | Genetic Analysis As | Diagnosis of Crohn's disease |
| GB201021399D0 (en) | 2010-12-16 | 2011-01-26 | Genetic Analysis As | Oligonucleotide probe set and methods of microbiota profiling |
| GB201102693D0 (en) | 2011-02-16 | 2011-03-30 | Genetic Analysis As | Method for identifying neonates at risk for necrotizing enterocolitis |
| WO2012116308A1 (en) | 2011-02-24 | 2012-08-30 | Gen-Probe Incorporated | Systems and methods for distinguishing optical signals of different modulation frequencies in an optical signal detector |
| GB201110712D0 (en) | 2011-06-23 | 2011-08-10 | Univ Ulster | Diagnostic methods |
| DE102012204366B4 (de) * | 2011-12-16 | 2017-07-27 | Siemens Aktiengesellschaft | Verfahren und Kit zur Identifizierung und Quantifizierung von einer einzelsträngigen Ziel-Nukleinsäure |
| GB201501603D0 (en) * | 2015-01-30 | 2015-03-18 | Norwegian University Of Life Sciences And Hedmark University College | Method and product |
| CN110383070A (zh) | 2017-03-07 | 2019-10-25 | 爱丽卜塔有限公司 | 癌生物标记 |
| CN107287291B (zh) * | 2017-06-02 | 2021-01-05 | 华南师范大学 | 一种基于g-C3N4与CdTe/CdS量子点相互作用的双标记核酸检测方法 |
| WO2019200326A1 (en) | 2018-04-13 | 2019-10-17 | Rarecyte, Inc. | Kits for labeling of biomarkers and methods of using the same |
| AU2020218358A1 (en) * | 2019-02-08 | 2021-08-26 | Board Of Regents, The University Of Texas System | Isolation and detection of exosome-associated microbiome for diagnostic and therapeutic purposes |
| CN110878298B (zh) * | 2019-11-22 | 2023-09-15 | 深圳市易基因科技有限公司 | rRNA捕获探针及其应用 |
| WO2023057467A1 (en) | 2021-10-04 | 2023-04-13 | Age Labs As | Screening method for rheumatoid arthritis |
| WO2024008955A1 (en) | 2022-07-08 | 2024-01-11 | Age Labs As | Method of screening for severe covid-19 susceptibility |
Family Cites Families (5)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5710028A (en) * | 1992-07-02 | 1998-01-20 | Eyal; Nurit | Method of quick screening and identification of specific DNA sequences by single nucleotide primer extension and kits therefor |
| CA2140278C (en) * | 1992-07-17 | 2009-03-17 | Morteza Asgari | Enriching and identyfing fetal cells in maternal blood for in situ hybridization |
| EP0672187A4 (en) * | 1992-10-08 | 1999-11-17 | Univ California | PCR TEST METHOD FOR DETERMINING PRESENCE AND CONCENTRATING A TARGET SUBSTANCE. |
| ATE309387T1 (de) * | 1996-03-01 | 2005-11-15 | Du Pont | Methode zur vervielfältigung und zum nachweis eines gewünschten nukleinsäurefragments |
| DE19612684A1 (de) * | 1996-03-29 | 1997-10-02 | Gsf Forschungszentrum Umwelt | Neue Verwendung extrem thermophiler DNA-Polymerasen |
-
1998
- 1998-04-01 GB GBGB9807045.1A patent/GB9807045D0/en not_active Ceased
-
1999
- 1999-04-01 CA CA2325052A patent/CA2325052C/en not_active Expired - Lifetime
- 1999-04-01 WO PCT/GB1999/001025 patent/WO1999050448A2/en not_active Ceased
- 1999-04-01 DE DE69937447T patent/DE69937447T2/de not_active Expired - Lifetime
- 1999-04-01 JP JP2000541335A patent/JP4481491B2/ja not_active Expired - Lifetime
- 1999-04-01 EP EP99914659A patent/EP1068352B1/en not_active Expired - Lifetime
- 1999-04-01 AT AT99914659T patent/ATE377091T1/de not_active IP Right Cessation
- 1999-04-01 AU AU33389/99A patent/AU769566B2/en not_active Ceased
- 1999-04-01 US US09/646,847 patent/US6617138B1/en not_active Expired - Lifetime
- 1999-04-01 CN CNB998048712A patent/CN100381576C/zh not_active Expired - Lifetime
-
2000
- 2000-10-02 NO NO20004962A patent/NO326359B1/no not_active IP Right Cessation
-
2003
- 2003-09-09 US US10/658,100 patent/US20040197794A1/en not_active Abandoned
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