DE60128908D1 - Verfahren zum Nachweis und zur Lokalisierung von Genen in situ durch Hybridisierung einer verzweigten DNA - Google Patents

Verfahren zum Nachweis und zur Lokalisierung von Genen in situ durch Hybridisierung einer verzweigten DNA

Info

Publication number
DE60128908D1
DE60128908D1 DE60128908T DE60128908T DE60128908D1 DE 60128908 D1 DE60128908 D1 DE 60128908D1 DE 60128908 T DE60128908 T DE 60128908T DE 60128908 T DE60128908 T DE 60128908T DE 60128908 D1 DE60128908 D1 DE 60128908D1
Authority
DE
Germany
Prior art keywords
nucleic acid
situ
detection
hybridization
localization
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Expired - Lifetime
Application number
DE60128908T
Other languages
English (en)
Other versions
DE60128908T2 (de
Inventor
Daryn Kenny
Lu Ping Shen
Vincent P Antao
Audrey N Player
Wei Cao
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Siemens Healthcare Diagnostics Inc
Original Assignee
Bayer Corp
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Bayer Corp filed Critical Bayer Corp
Publication of DE60128908D1 publication Critical patent/DE60128908D1/de
Application granted granted Critical
Publication of DE60128908T2 publication Critical patent/DE60128908T2/de
Anticipated expiration legal-status Critical
Expired - Lifetime legal-status Critical Current

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6816Hybridisation assays characterised by the detection means
    • C12Q1/682Signal amplification
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6841In situ hybridisation

Landscapes

  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Physics & Mathematics (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
DE60128908T 2000-06-02 2001-06-01 Verfahren zum Nachweis und zur Lokalisierung von Genen in situ durch Hybridisierung einer verzweigten DNA Expired - Lifetime DE60128908T2 (de)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US20913900P 2000-06-02 2000-06-02
US209139P 2000-06-02
PCT/US2001/017595 WO2001094632A2 (en) 2000-06-02 2001-06-01 Highly sensitive gene detection and localization using in situ branched-dna hybridization

Publications (2)

Publication Number Publication Date
DE60128908D1 true DE60128908D1 (de) 2007-07-26
DE60128908T2 DE60128908T2 (de) 2008-02-28

Family

ID=22777503

Family Applications (1)

Application Number Title Priority Date Filing Date
DE60128908T Expired - Lifetime DE60128908T2 (de) 2000-06-02 2001-06-01 Verfahren zum Nachweis und zur Lokalisierung von Genen in situ durch Hybridisierung einer verzweigten DNA

Country Status (7)

Country Link
US (1) US7033758B2 (de)
EP (1) EP1287165B1 (de)
JP (1) JP2003535600A (de)
AT (1) ATE364722T1 (de)
DE (1) DE60128908T2 (de)
ES (1) ES2287134T3 (de)
WO (1) WO2001094632A2 (de)

Families Citing this family (88)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2005090608A2 (en) * 2004-03-05 2005-09-29 Advandx, Inc. High affinity probes for analysis of human papillomavirus expression
WO2005098049A2 (en) * 2004-03-25 2005-10-20 California Institute Of Technology Hybridization chain reaction
US7727721B2 (en) * 2005-03-08 2010-06-01 California Institute Of Technology Hybridization chain reaction amplification for in situ imaging
US20060234261A1 (en) * 2005-03-08 2006-10-19 Pierce Niles A Colorimetric readout of hybridization chain reaction
CA2606723A1 (en) 2005-05-09 2006-11-16 Panomics, Inc. Multiplex capture of nucleic acids
US8632970B2 (en) 2005-05-09 2014-01-21 Affymetrix, Inc. Multiplex capture of nucleic acids
DE602006020715D1 (de) * 2005-05-12 2011-04-28 Affymetrix Inc Multiplex-assays für verzweigtkettige dna
US20090081688A1 (en) * 2005-06-20 2009-03-26 Advanced Cell Diagnostics Methods of detecting nucleic acids in individual cells and of identifying rare cells from large heterogeneous cell populations
EP2460893B1 (de) * 2005-06-20 2013-08-28 Advanced Cell Diagnostics, Inc. Multiplex-Erkennen von Nukleinsäuren
WO2007044427A2 (en) * 2005-10-05 2007-04-19 Panomics, Inc. Detection of nucleic acids from whole blood
US7960357B2 (en) * 2005-10-07 2011-06-14 California Institute Of Technology PKR activation via hybridization chain reaction
ATE553211T1 (de) * 2005-11-10 2012-04-15 Affymetrix Inc Nachweis von nukleinsäuren über amplifikation von stellvertreternukleinsäuren
JP2008043332A (ja) * 2006-08-17 2008-02-28 Panomics Inc 組織スライドからの核酸定量
US7615351B2 (en) * 2006-12-01 2009-11-10 Panomics, Inc. Two stage nucleic acid amplification using an amplification oligomer
WO2008106658A2 (en) * 2007-03-01 2008-09-04 California Institute Of Technology TRIGGERED RNAi
EP2155770B1 (de) 2007-05-16 2013-10-16 California Institute of Technology Vielseitiges nukleinsäure-haarnadel-motiv zur programmierung biomolekularer selbstanordnungspfade
EP3136103B1 (de) 2007-10-05 2018-08-29 Affymetrix, Inc. Stark gebündelte assays
US8497364B2 (en) * 2008-02-27 2013-07-30 California Institute Of Technology Triggered RNAi
US20100021904A1 (en) * 2008-05-21 2010-01-28 Pierce Niles A Shielded cross-linking probes
US8241854B2 (en) * 2008-05-22 2012-08-14 California Institute Of Technology Triggered RNAi
US20100021901A1 (en) * 2008-05-22 2010-01-28 Peng Yin Compositions and methods for detecting analytes
US20090298709A1 (en) * 2008-05-28 2009-12-03 Affymetrix, Inc. Assays for determining telomere length and repeated sequence copy number
WO2010056579A1 (en) * 2008-11-17 2010-05-20 Magic Technologies, Inc. Methods and compositions in particle-based detection of target molecules using covalent bond forming reactive pairs
US9150910B2 (en) * 2008-11-17 2015-10-06 Headway Technologies, Inc. Methods and compositions in particle-based detection of target molecules using linking molecules
US20130023433A1 (en) 2009-09-28 2013-01-24 Yuling Luo Methods of detecting nucleic acid sequences with high specificity
SG182303A1 (en) 2009-12-31 2012-08-30 Ventana Med Syst Inc Methods for producing uniquely specific nucleic acid probes
WO2011094669A1 (en) * 2010-01-29 2011-08-04 Advanced Cell Diagnostics, Inc. Methods of in situ detection of nucleic acids
EP2539355B1 (de) * 2010-02-26 2016-10-05 Ventana Medical Systems, Inc. In-situ hybridisierung mit polytag-sonden
US8658780B2 (en) 2010-05-18 2014-02-25 California Institute Of Technology Triggered covalent probes for imaging and silencing genetic expression
WO2011149897A1 (en) 2010-05-25 2011-12-01 Qiagen Gaithersburg, Inc. Fast results hybrid capture assay and associated strategically-truncated probes
US9512471B2 (en) * 2010-06-30 2016-12-06 Diacarta Inc Methods and kits for detecting human papillomavirus
US8962241B2 (en) 2010-07-20 2015-02-24 California Institute Of Technology Triggered molecular geometry based bioimaging probes
US8877438B2 (en) 2010-07-20 2014-11-04 California Institute Of Technology Self-assembled polynucleotide structure
US9834439B2 (en) 2010-07-20 2017-12-05 California Institute Of Technology Biomolecular self-assembly
EP3327140B1 (de) 2010-09-16 2025-08-06 Gen-Probe Incorporated Über l-nukleotide immobilisierbare fängersonden
EP2625292B1 (de) 2010-10-07 2018-12-05 The General Hospital Corporation Krebsbiomarker
EP3034625B1 (de) 2010-10-21 2017-10-04 Advanced Cell Diagnostics, Inc. Hochsensitives verfahren für den in-situ-nachweis von nukleinsäuren
US9284602B2 (en) 2010-10-27 2016-03-15 President And Fellows Of Harvard College Compositions of toehold primer duplexes and methods of use
CN103476948A (zh) * 2011-01-28 2013-12-25 领先细胞医疗诊断有限公司 用于测定头颈癌和宫颈病变中的hpv状态的rnascope* hpv测定法
CN103476951B (zh) 2011-02-16 2017-07-28 海德威技术公司 用于可检测的标记的靶标定位锚定的方法和组合物
US10501791B2 (en) 2011-10-14 2019-12-10 President And Fellows Of Harvard College Sequencing by structure assembly
ES2991004T3 (es) 2011-12-22 2024-12-02 Harvard College Métodos para la detección de analitos
CA2859761C (en) 2011-12-22 2023-06-20 President And Fellows Of Harvard College Compositions and methods for analyte detection
WO2014163886A1 (en) 2013-03-12 2014-10-09 President And Fellows Of Harvard College Method of generating a three-dimensional nucleic acid containing matrix
WO2013167387A1 (en) 2012-05-10 2013-11-14 Ventana Medical Systems, Inc. Uniquely specific probes for pten, pik3ca, met, top2a, and mdm2
WO2013184754A2 (en) 2012-06-05 2013-12-12 President And Fellows Of Harvard College Spatial sequencing of nucleic acids using dna origami probes
WO2014048942A1 (en) 2012-09-25 2014-04-03 Ventana Medical Systems, Inc. Probes for pten, pik3ca, met, and top2a, and method for using the probes
US9783841B2 (en) 2012-10-04 2017-10-10 The Board Of Trustees Of The Leland Stanford Junior University Detection of target nucleic acids in a cellular sample
US9273349B2 (en) 2013-03-14 2016-03-01 Affymetrix, Inc. Detection of nucleic acids
WO2014182528A2 (en) 2013-04-30 2014-11-13 California Institute Of Technology Multiplex labeling of molecules by sequential hybridization barcoding
US10510435B2 (en) 2013-04-30 2019-12-17 California Institute Of Technology Error correction of multiplex imaging analysis by sequential hybridization
MX385330B (es) 2013-06-04 2025-03-18 Harvard College Regulación transcripcional guiada por ácido ribonucleico.
US9856472B2 (en) 2013-07-01 2018-01-02 California Institute Of Technology Small conditional RNAs
US20150105298A1 (en) * 2013-10-10 2015-04-16 The Research Foundation For The State University Of New York Multi-oligomer in situ hybridization probes
WO2015120273A1 (en) 2014-02-07 2015-08-13 The General Hospital Corporation Differential diagnosis of hepatic neoplasms
US20150232935A1 (en) * 2014-02-14 2015-08-20 The General Hospital Corporation Methods for diagnosing igg4-related disease
WO2015131099A1 (en) 2014-02-28 2015-09-03 The General Hospital Corporation Diagnosis of multiple myeloma and lymphoma
WO2015200697A1 (en) 2014-06-25 2015-12-30 The General Hospital Corporation Targeting human satellite ii (hsatii)
US10179932B2 (en) 2014-07-11 2019-01-15 President And Fellows Of Harvard College Methods for high-throughput labelling and detection of biological features in situ using microscopy
US20160046984A1 (en) * 2014-08-15 2016-02-18 Affymetrix, Inc. Robust Detection of Nucleic Acids in Situ
WO2016123419A1 (en) 2015-01-30 2016-08-04 President And Fellows Of Harvard College Microscope-free imaging
CN106555010A (zh) * 2015-09-30 2017-04-05 江苏博铼生技医疗科技有限公司 人类乳头瘤病毒检测试剂盒及检测方法
US11078528B2 (en) 2015-10-12 2021-08-03 Advanced Cell Diagnostics, Inc. In situ detection of nucleotide variants in high noise samples, and compositions and methods related thereto
CA3004285A1 (en) 2015-11-03 2017-05-11 President And Fellows Of Harvard College Method and apparatus for volumetric imaging of a three-dimensional nucleic acid containing matrix
CA3038658A1 (en) 2015-12-14 2017-06-22 The Penn State Research Foundation Polymer-based signal amplification for protein and cell detection
WO2017189525A1 (en) 2016-04-25 2017-11-02 President And Fellows Of Harvard College Hybridization chain reaction methods for in situ molecular detection
ES2908919T3 (es) 2016-07-05 2022-05-04 California Inst Of Techn Reacción en cadena de hibridación de iniciador fraccionario
US12421540B2 (en) 2016-08-01 2025-09-23 California Institute Of Technology Sequential probing of molecular targets based on pseudo-color barcodes with embedded error correction mechanism
IL264831B (en) 2016-08-30 2022-09-01 California Inst Of Techn Immunohistochemistry via hybridization chain reaction
CN109923216B (zh) 2016-08-31 2024-08-02 哈佛学院董事及会员团体 将生物分子的检测组合到使用荧光原位测序的单个试验的方法
JP7239465B2 (ja) 2016-08-31 2023-03-14 プレジデント アンド フェローズ オブ ハーバード カレッジ 蛍光in situ配列決定による検出のための核酸配列ライブラリの作製法
AU2017348369B2 (en) 2016-10-27 2023-09-28 Geneoscopy, Inc. Detection method
CN110225980B (zh) 2016-11-21 2023-01-06 纳米线科技公司 化学组合物及其使用方法
DK3929304T3 (da) * 2016-12-16 2024-04-08 Aratome Llc Molekylær detektering ved ligeringsforstærkning
CN110050070B (zh) * 2016-12-22 2023-12-22 文塔纳医疗系统公司 用于组织样品的全自动化核酸提取方法
EP3568492B1 (de) * 2017-01-10 2025-01-01 President and Fellows of Harvard College Multiplexierte signalverstärkung
EP3743525A4 (de) 2018-01-26 2021-09-29 President and Fellows of Harvard College Näherungsdetektionsverfahren und -zusammensetzungen
CA3090652A1 (en) 2018-02-06 2019-08-15 The General Hospital Corporation Repeat rna as biomarkers of tumor immune response
EP3794146B1 (de) 2018-05-14 2025-12-10 Bruker Spatial Biology, Inc. Verfahren zur erkennung einer zuvor bestimmten nukleotidesequenz
EP3836967A4 (de) 2018-07-30 2022-06-15 ReadCoor, LLC Verfahren und systeme zur probenverarbeitung oder -analyse
WO2020076976A1 (en) 2018-10-10 2020-04-16 Readcoor, Inc. Three-dimensional spatial molecular indexing
CN109943665B (zh) * 2019-04-15 2023-05-16 郑州科蒂亚生物技术有限公司 一种用于检测头颈鳞癌致癌基因检测的探针序列及其试剂盒、应用
CA3135206A1 (en) * 2019-04-29 2020-11-05 Pierre Indermuhle Methods and systems for integrated on-chip single-molecule detection
US20210340621A1 (en) * 2020-04-22 2021-11-04 Readcoor, Llc Methods and systems for sequencing
CN111378723B (zh) * 2020-04-24 2023-05-26 郑州科蒂亚生物技术有限公司 一种在组织上检测PD-L1 mRNA的试剂盒及方法
US20220049303A1 (en) 2020-08-17 2022-02-17 Readcoor, Llc Methods and systems for spatial mapping of genetic variants
CN112831599B (zh) * 2020-12-07 2023-05-23 郑州科蒂亚生物技术有限公司 一种基于信号放大技术的CoVID-19病毒检测试剂盒
US11873485B2 (en) 2021-01-26 2024-01-16 California Institute Of Technology Allosteric conditional guide RNAs for cell-selective regulation of CRISPR/Cas

Family Cites Families (11)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5985549A (en) 1985-10-22 1999-11-16 University Of Massachusetts Non-isotopic in-situ hybridization method for detection of nucleic acids
US4868105A (en) 1985-12-11 1989-09-19 Chiron Corporation Solution phase nucleic acid sandwich assay
US5124246A (en) 1987-10-15 1992-06-23 Chiron Corporation Nucleic acid multimers and amplified nucleic acid hybridization assays using same
US5849481A (en) 1990-07-27 1998-12-15 Chiron Corporation Nucleic acid hybridization assays employing large comb-type branched polynucleotides
JP3454847B2 (ja) * 1992-08-26 2003-10-06 株式会社東芝 ハイブリダイゼーション法
US5501954A (en) 1994-06-13 1996-03-26 Genzyme Corporation Method of detecting cellular material
US5876924A (en) * 1994-06-22 1999-03-02 Mount Sinai School Of Medicine Nucleic acid amplification method hybridization signal amplification method (HSAM)
US5681702A (en) 1994-08-30 1997-10-28 Chiron Corporation Reduction of nonspecific hybridization by using novel base-pairing schemes
US6022689A (en) * 1995-04-07 2000-02-08 University Of New Mexico Situ hybridization slide processes
US5888733A (en) 1995-11-16 1999-03-30 Dako A/S In situ hybridization to detect specific nucleic acid sequences in eucaryotic samples
US6465175B2 (en) 1997-09-04 2002-10-15 Bayer Corporation Oligonucleotide probes bearing quenchable fluorescent labels, and methods of use thereof

Also Published As

Publication number Publication date
US20020172950A1 (en) 2002-11-21
ATE364722T1 (de) 2007-07-15
WO2001094632A2 (en) 2001-12-13
EP1287165B1 (de) 2007-06-13
DE60128908T2 (de) 2008-02-28
ES2287134T3 (es) 2007-12-16
US7033758B2 (en) 2006-04-25
EP1287165A2 (de) 2003-03-05
JP2003535600A (ja) 2003-12-02
WO2001094632A3 (en) 2002-05-30

Similar Documents

Publication Publication Date Title
DE60128908D1 (de) Verfahren zum Nachweis und zur Lokalisierung von Genen in situ durch Hybridisierung einer verzweigten DNA
CN102373273B (zh) 一种结核分枝杆菌核酸的检测试剂盒
ATE459727T1 (de) Test und zusammensetzungen zum nachweis von bacillus-anthracis-nukleinsäure
DE69031911D1 (de) Verfahren zum nachweis von picornaviren in biologischen flüssigkeiten und geweben
WO2001075166A3 (en) Compositions and methods for detecting and quantifying gene expression
DE60133111D1 (de) Verfahren zur erkennung und zum assay von nukleinsäuresequenzen
ATE188745T1 (de) Verfahren zur detektion einer nukleinsaeure mittels einer nukleinsaeuresonde, das ein spezifisches einfangen und eine detektion auf einmal erlaubt
CN103614489B (zh) 一种登革热病毒的恒温扩增检测试剂盒及检测方法
DE69017204D1 (de) Immobilisierte oligonukleotidsonden und ihre verwendungen.
ATE368125T1 (de) Verfahren zur erkennung von einzel-nukleotid- polymorphismen
ATE307903T1 (de) Immunologischer nachweis von rna:dna hybriden auf mikroarrays
DE60219813D1 (de) Test-streife-probesystem und verfahren zur nachweis von spezifischen nukleinsäuresequenzen
DE59712894D1 (de) Verfahren zum nachweis klinisch relevanter veränderungen der dns-sequenz des ki-ras-onkogens, seine verwendung und testkit zur früherkennung von tumoren
DE69717840D1 (de) Nachweis und identifizierung von nicht-polio enteroviren
Wei et al. A new strategy based on a cascade amplification strategy biosensor for on-site eDNA detection and outbreak warning of crown-of-thorns starfish
ATE293707T1 (de) Nukelinsäure primer und proben zum nachweis von tumorzellen
DE60306328D1 (de) Verfahren zur integrierten Integritätsbewertung und Analyse von Nukleinsäuren
WO2006012302A3 (en) Methods for rna fluorescence in situ hybridization
ATE412053T1 (de) Verfahren zum nachweis von krebs
DE69122800D1 (de) Nucleinsäure-Proben und Verfahren zum Nachweis von Giardia Lamblia
DE60025336D1 (de) Verfahren und kit zur früherkennung von krebs
DE69524199D1 (de) Primer und sonden zur amplifizierung und zum nachweis von cmv nukleinsäure
WO2004001067A3 (de) Detektion von toxischen algen
ATE290605T1 (de) Verfahren und reagentiensatz zur erkennung von antiviralen wirkstoff resistenzen
ATE242781T1 (de) Verfahren, kit und dna-sonden zum nachweis einer pilz-spezies in klinischem material

Legal Events

Date Code Title Description
8364 No opposition during term of opposition
8327 Change in the person/name/address of the patent owner

Owner name: SIEMENS HEALTHCARE DIAGNOSTICS INC. (N.D.GES.D, US

8328 Change in the person/name/address of the agent

Representative=s name: MAIER, D., DIPL.-ING. UNIV., PAT.-ASS., 81739 MUEN