CA2983819A1 - Amplification with primers of limited nucleotide composition - Google Patents
Amplification with primers of limited nucleotide composition Download PDFInfo
- Publication number
- CA2983819A1 CA2983819A1 CA2983819A CA2983819A CA2983819A1 CA 2983819 A1 CA2983819 A1 CA 2983819A1 CA 2983819 A CA2983819 A CA 2983819A CA 2983819 A CA2983819 A CA 2983819A CA 2983819 A1 CA2983819 A1 CA 2983819A1
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- CA
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- Prior art keywords
- primer
- primers
- nucleotide
- underrepresented
- amplification
- Prior art date
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Classifications
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- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/6848—Nucleic acid amplification reactions characterised by the means for preventing contamination or increasing the specificity or sensitivity of an amplification reaction
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
- C12Q2525/10—Modifications characterised by
- C12Q2525/101—Modifications characterised by incorporating non-naturally occurring nucleotides, e.g. inosine
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- C—CHEMISTRY; METALLURGY
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- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
- C12Q2525/10—Modifications characterised by
- C12Q2525/143—Modifications characterised by incorporating a promoter sequence
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
- C12Q2525/10—Modifications characterised by
- C12Q2525/161—Modifications characterised by incorporating target specific and non-target specific sites
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
- C12Q2525/30—Oligonucleotides characterised by their secondary structure
- C12Q2525/301—Hairpin oligonucleotides
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2527/00—Reactions demanding special reaction conditions
- C12Q2527/137—Concentration of a component of medium
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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- C12Q2527/00—Reactions demanding special reaction conditions
- C12Q2527/143—Concentration of primer or probe
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2565/00—Nucleic acid analysis characterised by mode or means of detection
- C12Q2565/10—Detection mode being characterised by the assay principle
- C12Q2565/107—Alteration in the property of hybridised versus free label oligonucleotides
Landscapes
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- Genetics & Genomics (AREA)
- Biophysics (AREA)
- Analytical Chemistry (AREA)
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- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
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| US201562152756P | 2015-04-24 | 2015-04-24 | |
| US62/152,756 | 2015-04-24 | ||
| PCT/US2016/029054 WO2016172632A2 (en) | 2015-04-24 | 2016-04-22 | Amplification with primers of limited nucleotide composition |
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| ES2891085T3 (es) | 2015-01-30 | 2022-01-26 | Harvard College | Obtención de imágenes sin microscopio |
| CN114250274A (zh) | 2015-04-24 | 2022-03-29 | 阿提拉生物系统公司 | 利用有限核苷酸组成的引物扩增 |
| WO2018077847A1 (en) * | 2016-10-31 | 2018-05-03 | F. Hoffmann-La Roche Ag | Barcoded circular library construction for identification of chimeric products |
| KR102651626B1 (ko) * | 2016-12-29 | 2024-03-26 | 주식회사 씨젠 | 프라이머 다이머 형성을 감소시키고 증폭 효율을 증가시키는 방법 |
| EP3568492B1 (en) * | 2017-01-10 | 2025-01-01 | President and Fellows of Harvard College | Multiplexed signal amplification |
| CN106868111B (zh) * | 2017-01-13 | 2020-12-25 | 中玉金标记（北京）生物技术股份有限公司 | 利用通用TaqMan探针检测SNP的方法和试剂盒 |
| CA3058202A1 (en) * | 2017-04-17 | 2018-10-25 | Montana State University | Switch-like isothermal dna amplification demonstrating a non-linear amplification rate |
| AU2018313286B2 (en) * | 2017-08-11 | 2024-09-12 | Atila Biosystems Incorporated | Digital amplification with primers of limited nucleotide composition |
| US20190112636A1 (en) * | 2017-10-16 | 2019-04-18 | ChromaCode, Inc. | Methods and compositions for nucleic acid detection |
| EP3743525A4 (en) | 2018-01-26 | 2021-09-29 | President and Fellows of Harvard College | PROXIMITY DETECTION METHODS AND COMPOSITIONS |
| KR102180462B1 (ko) * | 2018-01-31 | 2020-11-18 | 한국과학기술원 | 삼중접합구조 기반 등온 핵산 증폭 기술을 이용한 표적핵산 검출 방법 |
| JP7013960B2 (ja) * | 2018-03-13 | 2022-02-01 | 株式会社リコー | 核酸検出方法及び核酸検出装置、並びに、核酸検出キット |
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| DE102018213026A1 (de) * | 2018-08-03 | 2020-02-06 | Robert Bosch Gmbh | Verfahren zur Durchführung einer Echtzeit-PCR |
| GB2587178B (en) * | 2019-01-09 | 2021-10-06 | 3Cr Bioscience Ltd | Method |
| US20220090194A1 (en) * | 2019-01-09 | 2022-03-24 | 3Cr Bioscience Ltd. | Method for detecting a nucleic acid sequence |
| JP7692355B2 (ja) * | 2019-01-25 | 2025-06-13 | プレジデント・アンド・フェロウズ・オブ・ハーバード・カレッジ | 核酸を合成するための組成物および方法 |
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| CN110079584B (zh) * | 2019-03-29 | 2020-07-28 | 中国农业大学 | 基于3d-hcr水凝胶的汞离子快速可视化检测方法 |
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| CN112301103B (zh) * | 2019-08-02 | 2023-04-11 | 北京贝瑞和康生物技术有限公司 | 一种非特异性扩增天然短片段核酸的方法和试剂盒 |
| CN110542674B (zh) * | 2019-09-19 | 2021-10-22 | 济南大学 | 一种检测谷胱甘肽的生物传感器及其制备方法 |
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| WO2022011224A2 (en) * | 2020-07-09 | 2022-01-13 | University Of Washington | Kits, methods, polypeptides, systems, and non-transitory, machine-readable storage media for detecting a nucleic acid |
| CN112899357A (zh) * | 2021-01-05 | 2021-06-04 | 南京普济生物有限公司 | 一种运用数字pcr进行胎儿分数检测的方法及其试剂盒 |
| CN112899346A (zh) * | 2021-01-05 | 2021-06-04 | 南京普济生物有限公司 | 一种降低pcr非特异性扩增的核苷酸及其设计方法与应用 |
| CN112899366A (zh) * | 2021-01-06 | 2021-06-04 | 南京普济生物有限公司 | 一种结直肠癌基因突变位点的检测方法及其试剂盒 |
| CN112735527B (zh) * | 2021-01-06 | 2022-09-13 | 武汉华大基因技术服务有限公司 | 一种串联序列解析方法、装置和存储介质 |
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| US20220033891A1 (en) | 2022-02-03 |
| CN114250274A (zh) | 2022-03-29 |
| AU2016252998B2 (en) | 2021-11-04 |
| JP2022008577A (ja) | 2022-01-13 |
| JP2018514230A (ja) | 2018-06-07 |
| EP3286338A4 (en) | 2018-12-19 |
| CN107849603A (zh) | 2018-03-27 |
| WO2016172632A2 (en) | 2016-10-27 |
| WO2016172632A3 (en) | 2017-01-12 |
| AU2022200725A1 (en) | 2022-02-24 |
| EP3286338C0 (en) | 2023-11-01 |
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