WO2018048937A1 - 2'-substituted-n6-substituted purine nucleotides for rna virus treatment - Google Patents

2'-substituted-n6-substituted purine nucleotides for rna virus treatment Download PDF

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Publication number
WO2018048937A1
WO2018048937A1 PCT/US2017/050323 US2017050323W WO2018048937A1 WO 2018048937 A1 WO2018048937 A1 WO 2018048937A1 US 2017050323 W US2017050323 W US 2017050323W WO 2018048937 A1 WO2018048937 A1 WO 2018048937A1
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Prior art keywords
alkyl
c2alkyl
aryl
hydrogen
heteroaryl
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PCT/US2017/050323
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English (en)
French (fr)
Inventor
Jean-Pierre Sommadossi
Adel Moussa
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Atea Pharmaceuticals, Inc.
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Priority to KR1020227035793A priority Critical patent/KR20220146668A/ko
Priority to BR112019004297A priority patent/BR112019004297A2/pt
Priority to MYPI2019001191A priority patent/MY197236A/en
Priority to EA201990628A priority patent/EA037868B1/ru
Priority to JP2019512772A priority patent/JP2019526596A/ja
Priority to CN202310189960.6A priority patent/CN116036114A/zh
Application filed by Atea Pharmaceuticals, Inc. filed Critical Atea Pharmaceuticals, Inc.
Priority to CA3034648A priority patent/CA3034648C/en
Priority to ES17849474T priority patent/ES2907874T3/es
Priority to CN201780054843.1A priority patent/CN109689672B/zh
Priority to KR1020207025602A priority patent/KR102456417B1/ko
Priority to SI201731075T priority patent/SI3512863T1/sl
Priority to KR1020197009555A priority patent/KR20190043602A/ko
Priority to HRP20220278TT priority patent/HRP20220278T1/hr
Priority to EP22165102.9A priority patent/EP4088725A1/en
Priority to LTEPPCT/US2017/050323T priority patent/LT3512863T/lt
Priority to AU2017324939A priority patent/AU2017324939B2/en
Priority to RU2019109263A priority patent/RU2776918C2/ru
Priority to DK17849474.6T priority patent/DK3512863T3/da
Priority to RS20220185A priority patent/RS62943B1/sr
Priority to PL17849474T priority patent/PL3512863T3/pl
Priority to SG11201901457TA priority patent/SG11201901457TA/en
Priority to EP21167491.6A priority patent/EP3865136A1/en
Priority to EP17849474.6A priority patent/EP3512863B1/en
Publication of WO2018048937A1 publication Critical patent/WO2018048937A1/en
Priority to ZA2019/01061A priority patent/ZA201901061B/en
Priority to US16/293,423 priority patent/US10946033B2/en
Priority to US16/821,850 priority patent/US20200222442A1/en
Priority to AU2020220216A priority patent/AU2020220216B2/en
Priority to US17/482,224 priority patent/US11975016B2/en
Priority to CY20221100145T priority patent/CY1125163T1/el
Priority to AU2022215185A priority patent/AU2022215185A1/en

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    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00—Medicinal preparations containing organic active ingredients
    • A61K31/70—Carbohydrates; Sugars; Derivatives thereof
    • A61K31/7042—Compounds having saccharide radicals and heterocyclic rings
    • A61K31/7052—Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides
    • A61K31/706—Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides containing six-membered rings with nitrogen as a ring hetero atom
    • A61K31/7064—Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides containing six-membered rings with nitrogen as a ring hetero atom containing condensed or non-condensed pyrimidines
    • A61K31/7076—Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides containing six-membered rings with nitrogen as a ring hetero atom containing condensed or non-condensed pyrimidines containing purines, e.g. adenosine, adenylic acid
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00—Medicinal preparations containing organic active ingredients
    • A61K31/66—Phosphorus compounds
    • A61K31/675—Phosphorus compounds having nitrogen as a ring hetero atom, e.g. pyridoxal phosphate
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K9/00—Medicinal preparations characterised by special physical form
    • A61K9/0012—Galenical forms characterised by the site of application
    • A61K9/0043—Nose
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P1/00—Drugs for disorders of the alimentary tract or the digestive system
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12—Antivirals
    • A61P31/14—Antivirals for RNA viruses
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H19/00—Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof
    • C07H19/02—Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof sharing nitrogen
    • C07H19/04—Heterocyclic radicals containing only nitrogen atoms as ring hetero atom
    • C07H19/16—Purine radicals
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H19/00—Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof
    • C07H19/02—Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof sharing nitrogen
    • C07H19/04—Heterocyclic radicals containing only nitrogen atoms as ring hetero atom
    • C07H19/16—Purine radicals
    • C07H19/20—Purine radicals with the saccharide radical esterified by phosphoric or polyphosphoric acids
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H19/00—Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof
    • C07H19/02—Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof sharing nitrogen
    • C07H19/04—Heterocyclic radicals containing only nitrogen atoms as ring hetero atom
    • C07H19/16—Purine radicals
    • C07H19/20—Purine radicals with the saccharide radical esterified by phosphoric or polyphosphoric acids
    • C07H19/207—Purine radicals with the saccharide radical esterified by phosphoric or polyphosphoric acids the phosphoric or polyphosphoric acids being esterified by a further hydroxylic compound, e.g. flavine adenine dinucleotide or nicotinamide-adenine dinucleotide
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
    • C07H23/00—Compounds containing boron, silicon, or a metal, e.g. chelates, vitamin B12
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A50/00—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE in human health protection, e.g. against extreme weather
    • Y02A50/30—Against vector-borne diseases, e.g. mosquito-borne, fly-borne, tick-borne or waterborne diseases whose impact is exacerbated by climate change

Definitions

  • the present invention is directed to nucleotide compounds, compositions and uses thereof to treat RNA viruses other than HCV. BACKGROUND OF THE INVENTION
  • the Baltimore classification system sorts viruses into Groups, labeled I-VII, according to their genome.
  • DNA viruses belong to Groups I, II, and VII, while RNA viruses belong to Groups III-VI.
  • RNA viruses use ribonucleic acid as their genetic material.
  • An RNA virus can have double-stranded (ds) RNA or single stranded RNA and can also be positive-stranded or negative- stranded.
  • Group III viruses are double-stranded RNA viruses.
  • Groups IV and V are both single- stranded RNA viruses, but Groups IV viruses are positive-sense and Groups V are negative- sense.
  • Group VI are positive-sense single-stranded RNA viruses that replicate through a DNA intermediate.
  • the Group III dsRNA viruses include the following eleven families: Amalgaviridae, Birnaviridae, Chrysoviridae, Cystoviridae, Endornaviridae, Hypoviridae, Megabirnaviridae, Partitiviridae, Picobirnaviridae, Quadriviridae, Reoviridae and Totiviridae.
  • the Group IV positive-sense ssRNA viruses include three orders and thirty-three families.
  • the order Nidovirales includes the following families: Arteviridae, Coronaviridae, Mesoniviridae, and Roniviridae.
  • the order Picornavirales includes the following families: Dicistroviridae, Ifaviridae, Marnaviridae, Picornaviridae and Secoviridae.
  • the order Tymovirales includes the following families: Alphaflexiviridae, Betaflexiviridae, Gammaflexiviridae and Tymoviridae.
  • the following positive-sense ssRNA viruses include viruses from the following unassigned families: Alphatetraviridae, Alvernaviridae, Astroviridae, Barnaviridae, Benyviridae, Bromoviridae, Caliciviridae, Carmotetraviridae, Closteroviridae, Flaviviridae, Fusariviridae, Hepeviridae, Leviviridae, Luteoviridae, Narnaviridae, Nodaviridae, Permutotetraviridae, Potyviridae, Togaviridae, Tombusviridae and Virgaviridae.
  • Coronaviridae viral infections include infections with virus of the genuses Alphacoronavirus, Betacoronavirus (which includes severe acute respiratory syndrome coronavirus (SARS-CoV)), Gammacoronavirus, and Deltacoronavirus.
  • Alphacoronavirus which includes severe acute respiratory syndrome coronavirus (SARS-CoV)
  • Betacoronavirus which includes severe acute respiratory syndrome coronavirus (SARS-CoV)
  • Gammacoronavirus gammacoronavirus
  • Deltacoronavirus avirus
  • Flaviviridae viral infections include infections with viruses of the genera Flavivirus and Pestivirus.
  • Flavivirus infections include Dengue fever, Kyasanur Forest disease, Powassan disease, Wesselsbron disease, West Nile fever, yellow fever, Zika virus, Rio bravo, Rocio, Negishi, and the encephalitises including: California encephalitis, central European encephalitis, Ilheus virus, Murray Valley encephalitis, St. Louis encephalitis, Japanese B encephalitis, Louping ill, and Russian spring-rodents summer encephalitis.
  • Pestivirus infections include primarily livestock diseases, including swine fever in pigs, BVDV (bovine viral diarrhea virus) in cattle, and Border Disease virus infections.
  • Picornavirus infections include infections with viruses of the genuses Aphthovirus, Aquamavirus, Avihepatovirus, Cardiovirus, Cosavirus, Dicipivirus, Enterovirus, Erbovirus, Hepatovirus, Kobuvirus, Megrivirus, Parechovirus, Salivirus, Sapelovirus, Senecavirus, Teschovirus, and Tremovirus.
  • the Togaviridae family comprises four genera: Alphavirus, Arterivirus, Rubivirus and Pestivirus.
  • the alphavirus genus contains four viruses that produce encephalitis: Eastern equine encephalitis (EEE) virus, Venezuelan equine encephalitis (VEE) virus, Western equine encephalitis (WEE) virus and the Everglades virus.
  • the Alphavirus genus includes the Chikungunya virus, Mayaro virus, Ockelbo virus, O'nyong-nyong virus, Ross River virus, Semliki Forest virus and Sindbis virus (SINV).
  • the Arterivirus genus contains a single member: the equine arteritis virus.
  • the pestivirus genus contains three viruses of veterinary importance, namely the bovine viral diarrhea virus (BVDV), hog cholera virus and border disease virus.
  • the only member of the Rubivirus genus is the rubella virus.
  • the Group V negative-sense ssRNA viruses include the order Mononegavirales.
  • the Mononegavirales order includes, but is not limited to, the following families and viruses: Bornaviridae, Borna disease virus; Filoviridae, Ebola virus and Marburg virus; Paramyxoviridae, Measles virus, Mumps virus, Nipah virus, Hendra virus, respiratory syncytial virus (RSV) and Newcastle disease virus (NDV); Rhabdoviridae, Rabies virus and Nyamiviridae, Nyavirus.
  • Unassigned families and viruses include, but are not limited to: Arenaviridae, Lassa virus; Bunyaviridae, Hantavirus, Crimean-Congo hemorrhagic fever; Ophioviridae and Orthomyxoviridae, influenza virus.
  • the Bunyaviridae family comprises more than two hundred named viruses and the family is divided into five genera: Hantavirus, Nairovirus, Orthobunyavirus, Phlebovirus and Tospovirus.
  • the Hantavirus genus includes the Hantaan virus.
  • the Nairovirus genus includes the Crimean-Congo Hemorrhagic Fever virus and Dugbe viruses.
  • the Orthobunyavirus genus is comprised of approximately one hundred seventy viruses that have been divided into multiple serogroups.
  • the Serogroups include Anopheles A serogroup, Anopheles B serogroup, Bakau serogroup, Bunyamwera serogroup, Bwamba serogroup, California serogroup, Capim serogroup, Gamboa serogroup, Group C serogroup, Guama serogroup, Koongol serogroup, Mapputta serogroup, Minatitlan serogroup, Nyando serogroup, Olifanstlei serogroup, Patois serogroup, Simbu serogroup, Tete serogroup, Turlock serogroup, Wyeomyia serogroup and the Unclassified group.
  • the Anopheles A serogroup includes the Anopheles A virus, Tacaiuma virus, Virgin River virus, Trombetas complex, Arumateua virus, Caraipe virus, Trombetas virus and the Tucurui virus.
  • the Anopheles B serogroup includes the Anopheles B virus and the Boraceia virus.
  • the Bakau serogroup includes the Bakau virus and the Nola virus.
  • the Bunyamwera serogroup includes the Birao virus, Bozo virus, Bunyamwera virus, Cache Valley virus, Fort Sherman virus, Germiston virus, Guaroa virus, Ilesha virus, Kairi virus, Main Drain virus, Northway virus, Playas virus, Potosi virus, Shokwe virus, Stanfield virus, Tensaw virus, Xingu virus, Batai virus, Calovo virus, Chittoor virus, Garissa virus, KV-141 virus, and Ngari virus.
  • the Bwamba serogroup includes the Bwamba and Pongola viruses.
  • the California serogroup includes the California encephalitis virus, Chatanga virus, Inkoo virus, Jamestown Canyon virus, Jerry Slough virus, Keystone virus, Khatanga virus, La Crosse virus, Lumbo virus, Melao virus, Morro Bay virus, San Angelo virus, Serra do Navio virus, Snowshoe hare virus, South River virus, Tahyna virus, and the Trivittatus virus.
  • the Capim serogroup includes the Acara virus, Benevides virus and the Capim virus.
  • the Gamboa serogroup includes the Alajuela virus, Gamboa virus, Pueblo Viejo virus and San Juan virus.
  • the Group C serogroup includes, but is not limited to, Bruconha virus, Ossa virus, Apeu virus, Brunconha virus, Caraparu virus, Vinces virus, Madrid virus, Gumbo limbo virus, Marituba virus, Murutucu virus, Nepuyo virus, Restan virus, Itaqui virus and Oriboca virus.
  • the Guama serogroup includes, but is not limited to, the Bertioga virus, Bimiti virus, Cananeia virus, Guama virus, Guaratuba virus, Itimirim virus and Mirim virus.
  • the Koongol serogroup includes, but is not limited to, the Koongol virus and Wongal virus.
  • the Mapputta serogroup includes, but is not limited to, the Buffalo Creek virus, Mapputta virus, Maprik virus, Murrumbidgee virus and Salt Ash virus.
  • the Minatitlan serogroup includes, but is not limited to, Minatitlan virus and Palestina virus.
  • the Nyando serogroup includes, but is not limited to, Eretmapodites virus and Nyamdo virus.
  • the Olifanstlei serogroup includes, but is not limited to, Botambi virus and Olifanstlei virus.
  • the Patois serogroup includes, but is not limited to, Abras virus, Babahoyo virus, Pahayokee virus, Patois virus and Shark River virus.
  • the Simbu serogroup includes, but is not limited to, Iquitos virus, Jatobal virus, Leanyer virus, Madre de Dios virus, Oropouche virus, Oya virus, Thimiri virus, Akabane virus, Tinaroo virus, Douglas virus, Sathuperi virus, Aino virus, Shuni virus, Peaton virus, Shamonda virus, Schmallenberg virus and Simbu virus.
  • the Tete serogroup includes, but is not limited to, Batama virus and Tete virus.
  • the Turlock serogroup includes, but is not limited to, M’Poko virus, Turlock virus and Umbre virus.
  • the Wyeomyia serogroup includes, but is not limited to, Anhembi virus, Cachoeira Porteira virus, Iaco virus, Macaua virus, Sororoca virus, Taiassui virus, Tucunduba virus and Wyeomyia virus.
  • the Unclassified serogroup includes, but is not limited to, Batama virus, Belmont virus, Enseada virus, Estero Real virus, Jurona virus, Kaeng Khei virus and Kowanyama virus.
  • the Phlebovirus genus includes, but is not limited to, the Naples and Sicilian Sandfly Fever viruses and Rift Valley Fever virus.
  • the Tospovirus genus includes, but is not limited to, the type species Tomato spotted wilt virus and the following species: Bean necrotic mosaic virus, Capsicum chlorosis virus, Groundnut bud necrosis virus, Groundnut ringspot virus, Groundnut yellow spot virus, Impatiens necrotic spot virus, Iris yellow spot virus, Melon yellow spot virus, Peanut bud necrosis virus, Peanut yellow spot virus, Soybean vein necrosis-associated virus, Tomato chlorotic spot virus, Tomato necrotic ringspot virus, Tomato yellow ring virus, Tomato zonate spot virus, Watermelon bud necrosis virus, Watermelon silver mottle virus and Zucchini lethal chlorosis virus.
  • Picornavirus infections include infections with viruses of the genuses Aphthovirus, Aquamavirus, Avihepatovirus, Cardiovirus, Cosavirus, Dicipivirus, Enterovirus, Erbovirus, Hepatovirus, Kobuvirus, Megrivirus, Parechovirus, Salivirus, Sapelovirus, Senecavirus, Teschovirus, and Tremovirus.
  • Coronavirus infections include infections with virus of the genuses Alphacoronavirus, Betacoronavirus (which includes severe acute respiratory syndrome coronavirus (SARS-CoV)), Gammacoronavirus, and Deltacoronavirus.
  • nucleoside polymerase inhibitors for the treatment of viruses include those filed by Idenix Pharmaceuticals (6,812,219; 6,914,054; 7,105,493; 7,138,376; 7,148,206; 7,157,441; 7,163,929; 7,169,766; 7,192,936; 7,365,057; 7,384,924; 7,456,155; 7,547,704; 7,582,618; 7,608,597; 7,608,600; 7,625,875; 7,635,689; 7,662,798; 7,824,851; 7,902,202; 7,932,240; 7,951,789; 8,193,372; 8,299,038; 8,343,937; 8,362,068; 8,507,460; 8,637,475; 8,674,085; 8,680,071; 8,691,788, 8,742,101, 8,951,985; 9,109,001; 9,243,025; US2016/0002281; US2013
  • RNA virus in particular RNA viruses other than HCV.
  • RNA viruses in particular RNA viruses other than HCV
  • the host can be a human or any animal that carries the viral infection.
  • Disclosed nucleotides include those with advantageous activity, for example, against bovine viral diarrhea virus (BVDV), Dengue virus 2, West Nile virus (WNV), Zika and Yellow fever virus (YFV) in vitro. Disclosed nucleotides also include those with advantageous activity against subtype 5 of the Coxsackie B virus.
  • BVDV bovine viral diarrhea virus
  • WNV West Nile virus
  • YFV Yellow fever virus
  • a method is presented to treat a single-stranded RNA positive stranded virus other than a hepacivirus or other than HCV.
  • a method is provided to treat Dengue virus 2 or Yellow fever virus.
  • a method is presented to treat a single-stranded RNA negative-sense virus.
  • a method is presented to treat a double-stranded RNA virus.
  • the compounds of the present invention are anabolized to a 5-monophosphate of the N 6 - substituted-purine without substantial N 6 -deamination and then subsequently anabolized at the 6- position to generate active guanine triphosphate compounds in a manner that provides good activity and therapeutic index.
  • the metabolism of the ⁇ -D-2'-substituted-N 6 -methyl-2,6-diaminopurine nucleoside as a phosphoramidate involves the production of a 5’-monophosphate and the subsequent anabolism of the N 6 -methyl-2,6-diaminopurine base to generate the 2'-substituted guanine nucleoside as the 5’-monophosphate.
  • the monophosphate is then further anabolized to the active species which is the 5’-triphosphate.
  • a 5’-stabilized phosphate prodrug or derivative of a 2'-substituted-N 6 -methyl-2,6-diaminopurine nucleotide, as well as a 2'-substituted-2-N 6 - dimethyl-2,6-diaminopurine nucleotide, and other 2'-substituted-N 6 -substituted purine nucleotides as described below are active against a range of RNA viruses.
  • the invention is the use of a compound of Formula I below for the treatment of an infection of an RNA virus in a host, for example, a human in need thereof.
  • a method is presented to treat a host, including a human, infected with a single- stranded RNA positive stranded virus other than a hepacivirus or other than HCV with an effective amount of a compound of Formula I.
  • a method is presented to treat a host, including a human, infected with a single-stranded RNA positive stranded virus of the Flaviviridae family, including but not limited to Dengue virus 2 and Yellow Fever, with an effective amount of a compound of Formula I.
  • a method is presented to treat a host, including a human, infected with a single-stranded RNA negative-sense virus with an effective amount of a compound of Formula I.
  • a method is presented to treat a host, including a human, infected with a double- stranded RNA virus with an effective amount of a compound of Formula I:
  • Y is NR 1 R 2 ;
  • R 1 is C 1 -C 5 alkyl (including methyl, ethyl, n-propyl, iso-propyl, n-butyl, iso-butyl, sec- butyl, tert-butyl and pentyl), C 1 -C 5 haloalkyl (including CH 2 F, CHF 2 , CF 3 , CH 2 CF 3 , CF 2 CH 3 and CF2CF3), C2-C6 alkenyl, C2-C6 alkynyl, –(C0-C2alkyl)(C3-C6cycloalkyl), –(C0- C2alkyl)(heterocycle), –(C0-C2alkyl)(aryl), –(C0-C2alkyl)(heteroaryl), –OR 25 , -C(O)R 3C (including–C(O)CH 3 ,–C(O)CH 2 CH 3 -C(O)CH(CH 3
  • R 2 is hydrogen, C 1 -C 5 alkyl (including methyl, ethyl, n-propyl, iso-propyl, n-butyl, iso- butyl, sec-butyl, tert-butyl and pentyl), C 1 -C 5 haloalkyl (including CHF 2 , CHF 2 , CF 3 , CH 2 CF 3 and CF2CF3), –(C0-C2alkyl)(C3-C6cycloalkyl), -C(O)R 3C (including –C(O)CH3, –C(O)CH2CH3- C(O)CH(CH 3 ) 2 , -C(O)OCH 3, -C(O)OC 2 H 5, -C(O)OC 3 H 7, -C(O)OC 4 H 9, and -C(O)OC 5 H 11 ),–(C 0 - C 2 alkyl)(aryl),–(C 0
  • R 1 and R 2 are methyl, CH2F, CHF2 or CF3;
  • R 3 is hydrogen, diphosphate, triphosphate, an optionally substituted carbonyl linked amino acid, or -C(O)R 3C ;
  • R 3A can be selected from O-, OH, an–O-optionally substituted aryl, an–O-optionally substituted heteroaryl, or an optionally substituted heterocyclyl;
  • R 3B can be selected from O-, OH, an optionally substituted N-linked amino acid or an optionally substituted N-linked amino acid ester;
  • R 3C is alkyl, alkenyl, alkynyl, -(C0-C2)(cycloalkyl), -(C0-C2)(heterocyclo), -(C0-C2)(aryl), -(C0-C2)(heteroaryl), -O-alkyl, -O-alkenyl, -O-alkynyl, -O-(C0-C2)(cycloalkyl), -O-(C0- C 2 )(heterocyclo), -O-(C 0 -C 2 )(aryl), or -O-(C 0 -C 2 )(heteroaryl), each of which can be optionally substituted;
  • R 4 is a monophosphate, diphosphate, triphosphate, or a stabilized phosphate prodrug, including but not limited to a phosphoramidate, a thiophosphoramidate, or any other moiety that is metabolized to a monophosphate, diphosphate or triphosphate in vivo in the host human or animal; or
  • R 3 and R 4 together with the oxygens that they are bonded to can form a 3’,5’-cyclic prodrug, including but not limited to, a 3’,5’-cyclic phosphate prodrug;
  • R 12 is hydrogen, CH3, CH2F, CHF2, CF3, or ethynyl
  • R 13 is hydrogen, fluoro, chloro, bromo, N3, NH2, CN or OR 3 ;
  • R 12 is methyl
  • R 13 is bromo, chloro, N 3 , NH 2 , CN or OR 3 .
  • At least one of R 1 and R 2 is cyclopropyl.
  • At least one of R 1 and R 2 is cyclopentyl.
  • the invention is the use of a compound of Formula II below for the treatment of an infection of an RNA virus in a host, for example, a human in need thereof.
  • a method is presented to treat a host, including a human, infected with a single- stranded RNA positive stranded virus other than a hepacivirus or other than HCV with an effective amount of a compound of Formula II.
  • a method is presented to treat a host, including a human, infected with a single-stranded RNA positive stranded virus of the Flaviviridae family, including but not limited to Dengue virus 2 and Yellow Fever, with an effective amount of a compound of Formula II.
  • a method is presented to treat a host, including a human, infected with a single-stranded RNA negative-sense virus with an effective amount of a compound of Formula II.
  • a method is presented to treat a host, including a human, infected with a double- stranded RNA virus with an effective amount of a compound of Formula II:
  • Y is NR 1 R 2 ;
  • R 1 is C1-C5alkyl (including methyl, ethyl, n-propyl, iso-propyl, n-butyl, iso-butyl, sec- butyl, tert-butyl and pentyl), C 1 -C 5 haloalkyl (including CH 2 F, CHF 2 , CF 3 , CH 2 CF 3 , CF 2 CH 3 and CF2CF3), C2-C6 alkenyl, C2-C6 alkynyl, –(C0-C2alkyl)(C3-C6cycloalkyl), –(C0- C2alkyl)(heterocycle), –(C0-C2alkyl)(aryl), –(C0-C2alkyl)(heteroaryl), –OR 25 , -C(O)R 3C (including–C(O)CH 3 ,–C(O)CH 2 CH 3 -C(O)CH(CH 3
  • R 2 is hydrogen, optionally substituted C 1 -C 5 alkyl (including methyl, ethyl, n-propyl, iso- propyl, n-butyl, iso-butyl, sec-butyl, tert-butyl and pentyl), C 1 -C 5 haloalkyl (including CHF 2 , CHF2, CF3, CH2CF3 and CF2CF3), optionally substituted –(C0-C2alkyl)(C3-C6cycloalkyl), optionally substituted–(C0-C2alkyl)(heterocycle), optionally substituted–(C0-C2alkyl)(aryl), optionally substituted –(C 0 -C 2 alkyl)(heteroaryl), -C(O)R 3C (including –C(O)CH 3 , – C(O)CH2CH3-C(O)CH(CH3)2, -C(O)OCH3, -
  • R 1 and R 2 is methyl, CH 2 F, CHF 2 or CF 3 ;
  • R 3 is hydrogen, diphosphate, triphosphate, an optionally substituted carbonyl linked amino acid, or -C(O)R 3C ;
  • R 3A can be selected from O-, OH, an–O-optionally substituted aryl, an–O-optionally substituted heteroaryl, or an optionally substituted heterocyclyl;
  • R 3B can be selected from O-, OH, an optionally substituted N-linked amino acid or an optionally substituted N-linked amino acid ester;
  • R 3C is alkyl, alkenyl, alkynyl, -(C 0 -C 2 )(cycloalkyl), -(C 0 -C 2 )(heterocyclo), -(C 0 -C 2 )(aryl), -(C0-C2)(heteroaryl), -O-alkyl, -O-alkenyl, -O-alkynyl, -O-(C0-C2)(cycloalkyl), -O-(C0- C2)(heterocyclo), -O-(C0-C2)(aryl), -O-(C0-C2)(heteroaryl), -S-alkyl, -S-alkenyl, -S-alkynyl, -S- (C 0 -C 2 )(cycloalkyl), -S-(C 0 -C 2 )(heterocyclo), -S-(C 0 -
  • R 3D is alkyl, alkenyl, alkynyl, -(C0-C2)(cycloalkyl), -(C0-C2)(heterocyclo), -(C0-C2)(aryl), -(C 0 -C 2 )(heteroaryl), -O-alkyl, -O-alkenyl, -O-alkynyl, -O-(C 0 -C 2 )(cycloalkyl), -O-(C 0 - C 2 )(heterocyclo), -O-(C 0 -C 2 )(aryl), or -O-(C 0 -C 2 )(heteroaryl), each of which can be optionally substituted;
  • R 4 is a monophosphate, diphosphate, triphosphate, or a stabilized phosphate prodrug, including but not limited to a phosphoramidate, a thiophosphoramidate, or any other moiety that is metabolized to a monophosphate, diphosphate or triphosphate in vivo in the host human or animal; or
  • R 3 and R 4 together with the oxygens that they are bonded to can form a 3’,5’-cyclic prodrug, including but not limited to, a 3’,5’-cyclic phosphate prodrug;
  • R 5 is C1-C5alkyl (including methyl, ethyl, n-propyl, iso-propyl, n-butyl, iso-butyl, sec- butyl, tert-butyl and pentyl), C 1 -C 5 haloalkyl (including CHF 2 , CHF 2 , CF 3 , CH 2 CF 3 and CF 2 CF 3 ), C 2 -C 6 alkenyl, C 2 -C 6 alkynyl,–(C 0 -C 2 alkyl)(C 3 -C 6 cycloalkyl),–(C 0 -C 2 alkyl)(heterocycle), about(C 0 - C2alkyl)(aryl), –(C0-C2alkyl)(heteroaryl), –OR 25 , -C(O)R 3C (including –C(O)CH3, – C(O)CH 2 CH 3 -C
  • R 6 is hydrogen, optionally substituted C1-C5alkyl (including methyl, ethyl, n-propyl, iso- propyl, n-butyl, iso-butyl, sec-butyl, tert-butyl and pentyl), C1-C5haloalkyl (including CHF2, CHF 2 , CF 3 , CH 2 CF 3 and CF 2 CF 3 ), optionally substituted –(C 0 -C 2 alkyl)(C 3 -C 6 cycloalkyl), optionally substituted–(C0-C2alkyl)(heterocycle), optionally substituted–(C0-C2alkyl)(aryl), optionally substituted–(C0-C2alkyl)(heteroaryl), -C(O)R 3C (including–C(O)CH3,
  • R 5 and R 6 together with the nitrogen that they are bonded to can form a heterocyclic ring;
  • R 12 is hydrogen, CH3, CH2F, CHF2, CF3, or ethynyl;
  • R 13 is hydrogen, fluoro, chloro, bromo, N3, NH2, CN or OR 3 ;
  • R 12 is methyl
  • R 13 is bromo, chloro, N 3 , NH 2 , CN or OR 3 .
  • -P(O)(OR 29 )(NR 29 R 30 ) or–NR 5 R 6 for example including but not limited to the following embodiments, chloro, bromo, fluoro, cyano, azido, ethyl, n-propyl, iso-propyl, n-butyl, iso-butyl, sec-butyl, tert-butyl and n-pentyl, 1,1-dimethylpropyl, 2,2-dimtheylpropyl, 3-methylbutyl, 1- methylbutyl, 1-ethylpropyl, vinyl, allyl, 1-butynyl, 2-butynyl, acetylenyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, -(CH2)-cyclopropyl, -(CH2)-cyclobutyl, -(CH2)-cyclopentyl, -(CH 2 —
  • R 23 is C1-C5alkyl, –(C0-C2alkyl)(C3-C6cycloalkyl), -(C0-C2alkyl)(heterocycle), -(C0- 2alkyl)(aryl) or -(C0-C2alkyl)(heteroaryl) each of which can be optionally substituted;
  • R 24 is hydrogen, C 1 -C 6 alkyl,–(C 1 -C 2 alkyl)(C 3 -C 6 cycloalkyl),
  • R 25 is hydrogen, C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, –(C 0 -C 2 alkyl)(C 3 - C 6 cycloalkyl),–(C 0 -C 2 alkyl)(C 3 -C 6 heterocycle), -(C 0 -C 2 alkyl)(aryl) or -(C 0 -C 2 alkyl)(heteroaryl) wherein except for the hydrogen each of which can be optionally substituted;
  • R 26 is independently selected from hydrogen, C1-C6alkyl, –(C0-C2alkyl)(C3- C 6 cycloalkyl), -(C 0 -C 2 alkyl)(heterocycle), -(C 0 -C 2 alkyl)(aryl), or -(C 0 -C 2 alkyl)(heteroaryl) wherein except for the hydrogen each of which can be optionally substituted;
  • R 27 hydrogen or optionally substituted C1-C6 alkyl
  • R 28 is C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl,–(C 0 -C 2 alkyl)(C 3 -C 6 cycloalkyl), –(C 0- C 2 alkyl)(C 3 -C 6 heterocycle), -(C 0 -C 2 alkyl)(aryl) or -(C 0 -C 2 alkyl)(heteroaryl) each of which can be optionally substituted;
  • R 29 is hydrogen, C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, –(C 0 -C 2 alkyl)(C 3 - C 6 cycloalkyl),–(C 0- C 2 alkyl)(C 3 -C 6 heterocycle), -(C 0 -C 2 alkyl)(aryl) or -(C 0 -C 2 alkyl)(heteroaryl) wherein except for the hydrogen each of which can be optionally substituted; or
  • R 27 and R 29 together with the nitrogen that they are bonded to can form a heterocyclic ring
  • R 30 is hydrogen, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl,
  • R 29 and R 30 can be bonded together to form a heterocyclic ring
  • x is 1, 2 or 3.
  • At least one of R 1 and R 2 is cyclopropyl.
  • R 1 and R 2 are cyclopentyl.
  • R 23 is -(C0-C2alkyl)(heterocycle) or -(C0-2alkyl)(aryl).
  • ⁇ -D-2'-Deoxy-2'- ⁇ -fluoro-2'- ⁇ -ethynyl-N 6 -methyl-2,6-diaminopurine nucleoside phosphoramidate is first metabolized to the 5’-monophosphate and then the N 6 -methyl-2,6- diaminopurine base is anabolized to generate the ⁇ -D-2'-deoxy-2'- ⁇ -fluoro-2'- ⁇ -ethynylguanine nucleoside as the 5’-monophosphate. The monophosphate is then further anabolized to the active species, the 5’-triphosphate (Scheme 1).
  • Scheme 1 2'-Substituted-N 6 -substituted-2,6-diaminopurine nucleotides can be further substituted at the N 2 -position by alkylation or acylated. This can modify the lipophilicity, pharmacokinetics, and/or targeting of the nucleotide to the liver.
  • N 2 modifications will increase cell permeability. In one embodiment, N 2 modifications will increase hepatic targeting.
  • the compounds described herein are provided in the ⁇ -D- configuration.
  • the amino acid portion can be in the L- or D-configuration.
  • the compounds can be provided in a ⁇ -L-configuration.
  • any substituent group that exhibits chirality can be provided in racemic, enantiomeric, diastereomeric form or any mixture thereof.
  • a phosphoramidate, thiophosphoramidate or other stabilized phosphorus prodrug in which the phosphorus exhibits chirality is used as the R 4 stabilized phosphate prodrug, it can be provided as an R or S chiral phosphorus derivative or a mixture thereof, including a racemic mixture. All of the combinations of these stereoconfigurations are included in the invention described herein.
  • the present invention includes the use of a compound of Formula I, Formula II, Formula III, Formula IV, Formula V, or Formula VI or a pharmaceutically acceptable composition, salt, or prodrug thereof, as described herein in an effective amount to treat an RNA virus, for example, an RNA virus other than HCV.
  • the parent nucleoside i.e., the nucleoside wherein R 4 is hydrogen and the 5’-position thus has a hydroxyl group
  • the parent nucleoside is not substantially deaminated by adenosine deaminase under conditions that mimic the in vivo environment (e.g., ambient temperature and aqueous physiological pH), for a period of 7 minutes, 10 minutes, 30 minutes, 60 minutes or 120 minutes. Unless otherwise stated, the time period is 30 minutes.
  • the term“not substantially deaminated” means that the parent compound is not converted to the corresponding guanine derivative, or 6-oxo derivative, in an amount sufficient to provide a therapeutic effect in vivo.
  • Compounds, methods, and compositions are provided for the treatment of a host infected with an RNA virus via administration of an effective amount of the compound or its pharmaceutically acceptable salt.
  • the compound or formulations that include the compounds can also be used in an effective amount prophylactically to prevent or restrict the progression of clinical illness in individuals who are RNA virus antibody- or antigen-positive.
  • the invention is the use of an effective amount of a compound of Formula Ia below for the treatment of an infection of an RNA virus in a host, for example, a human in need thereof.
  • a method is provided to treat a host infected with a single-stranded RNA positive stranded virus other than a hepacivirus or other than HCV.
  • a method is provided that includes the administration of an effective amount of a compound of Formula Ia for the treatment of a single-stranded RNA positive stranded virus of the Flaviviridae family, including but not limited to Dengue virus 2 and Yellow Fever, in a host, including a human in need thereof.
  • a method in an alternative embodiment, includes the administration of an effective amount of a compound of Formula Ia for the treatment of a single-stranded RNA negative-sense virus in a host, including a human in need thereof. In an alternative embodiment, a method is provided that includes the administration of an effective amount of a compound of Formula Ia for the treatment of a double-stranded RNA virus in a host, including a human in need thereof.
  • R 3 , R 3A , R 3B , R 3C , R 3D , and R 4 are as defined above.
  • R 3 is hydrogen
  • R 1 when Y is NR 1 R 2 , R 1 is methyl and R 2 is hydrogen. In one embodiment of Formula Ia, when Y is NR 1 R 2 , both R 1 and R 2 are methyl.
  • R 1 when Y is NR 1 R 2 , R 1 is methyl and R 2 is cyclopropyl. In one embodiment of Formula Ia, when Y is NR 1 R 2 , R 1 is cyclopropyl and R 2 is hydrogen.
  • R 4 is a stabilized phosphoramidate.
  • R 3 is independently selected from hydrogen, diphosphate, triphosphate, an optionally substituted carbonyl linked amino acid, and -C(O)R 3C .
  • the invention is the use of an effective amount of a compound of Formula Ib, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • Y, R 3 and R 4 are as defined above.
  • R 3 is hydrogen
  • R 1 when Y is NR 1 R 2 , R 1 is methyl and R 2 is hydrogen. In one embodiment of Formula Ib, when Y is NR 1 R 2 , both R 1 and R 2 are methyl.
  • R 1 when Y is NR 1 R 2 , R 1 is methyl and R 2 is cyclopropyl. In one embodiment of Formula Ib, when Y is NR 1 R 2 , R 1 is cyclopropyl and R 2 is hydrogen.
  • the invention is the use of an effective amount of a compound of Formula Ib’, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • n 1, 2, or 3;
  • p 0, 1, or 2;
  • R 60 is independently selected from C1-C5alkyl (including methyl, ethyl, n-propyl, iso- propyl, n-butyl, iso-butyl, sec-butyl, tert-butyl and pentyl), C 1 -C 5 haloalkyl (including CHF 2 , CHF2, CF3, CH2CF3 and CF2CF3), C2-C6 alkenyl, C2-C6 alkynyl,–(C0-C2alkyl)(C3- C6cycloalkyl),–(C0-C2alkyl)(heterocycle), about(C0-C2alkyl)(aryl),–(C0-C2alkyl)(heteroaryl), etc OR 25 , -C(O)R 3C (including–C(O)CH 3 ,–C(O)CH 2 CH 3 -C(O)CH(CH 3 ) 2 , -C(O)OCH 3,
  • R 3 , R 4 , R 3C , R 3D , R 25 , and R 28 are as defined above.
  • m is 1 and p is 0.
  • m is 2 and p is 0.
  • m is 3 and p is 0.
  • m is 2
  • p is 0, and R 3 is hydrogen.
  • m is 2, p is 0, R 3 is hydrogen, and R 4 is a stabilized phosphoramidate. In one embodiment of Formula Ib’, m is 3, p is 0, R 3 is hydrogen, and R 4 is a stabilized phosphoramidate.
  • R 4 is a stabilized phosphoramidate.
  • the invention is the use of an effective amount of a compound of Formula Ic, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • Y, R 3 and R 4 are as defined above.
  • R 3 is hydrogen
  • R 1 when Y is NR 1 R 2 , R 1 is methyl and R 2 is hydrogen. In one embodiment of Formula Ic, when Y is NR 1 R 2 , both R 1 and R 2 are methyl.
  • R 1 when Y is NR 1 R 2 , R 1 is methyl and R 2 is cyclopropyl. In one embodiment of Formula Ic, when Y is NR 1 R 2 , R 1 is cyclopropyl and R 2 is hydrogen.
  • R 1 is cyclopentyl and R 2 is hydrogen.
  • R 4 is a stabilized phosphoramidate.
  • the invention is the use of an effective amount of a compound of Formula Id, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • Y, R 3 and R 4 are as defined above.
  • R 3 is hydrogen
  • R 1 when Y is NR 1 R 2 , R 1 is methyl and R 2 is hydrogen. In one embodiment of Formula Id, when Y is NR 1 R 2 , both R 1 and R 2 are methyl.
  • R 1 when Y is NR 1 R 2 , R 1 is methyl and R 2 is cyclopropyl. In one embodiment of Formula Id, when Y is NR 1 R 2 , R 1 is cyclopropyl and R 2 is hydrogen.
  • R 1 is cyclopentyl and R 2 is hydrogen.
  • R 4 is a stabilized phosphoramidate.
  • the invention is the use of an effective amount of a compound of Formula Ie, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • Y, R 3 and R 4 are as defined above.
  • R 3 is hydrogen
  • Formula Ie when Y is NR 1 R 2 , R 1 is methyl and R 2 is hydrogen. In one embodiment of Formula Ie, when Y is NR 1 R 2 , R 1 is methyl and R 2 is cyclopropyl. In an alternative embodiment of Formula Ie, when Y is NR 1 R 2 , R 1 is cyclopropyl and R 2 is cyclopropyl.
  • R 1 is cyclopentyl and R 2 is hydrogen.
  • R 4 is a stabilized phosphoramidate.
  • the invention is the use of an effective amount of a compound of Formula II, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • Y, R 3 , R 4 , R 12 , R 13 and R 22 are as defined above.
  • the invention is the use of an effective amount of a compound of Formula IIa, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • R 3 , R 3A , R 3B , R 3C , R 3D , R 4 and R 22 are as defined above.
  • R 3 is hydrogen
  • R 1 when Y is NR 1 R 2 , R 1 is methyl and R 2 is hydrogen. In one embodiment of Formula IIa, when Y is NR 1 R 2 , both R 1 and R 2 are methyl.
  • R 1 when Y is NR 1 R 2 , R 1 is methyl and R 2 is cyclopropyl. In one embodiment of Formula IIa, when Y is NR 1 R 2 , R 1 is cyclopropyl and R 2 is hydrogen.
  • R 1 is cyclopentyl and R 2 is hydrogen.
  • R 4 is a stabilized phosphoramidate.
  • R 3 is independently selected from
  • the invention is the use of an effective amount of a compound of Formula IIb, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • Y, R 3 , R 4 , and R 22 are as defined above.
  • R 3 is hydrogen
  • R 1 when Y is NR 1 R 2 , R 1 is methyl and R 2 is hydrogen. In one embodiment of Formula IIb, when Y is NR 1 R 2 , both R 1 and R 2 are methyl.
  • R 1 is methyl and R 2 is cyclopropyl.
  • R 1 is cyclopropyl and R 2 is hydrogen.
  • R 1 is cyclopentyl and R 2 is hydrogen.
  • R 4 is a stabilized phosphoramidate.
  • the invention is the use of an effective amount of a compound of Formula IIb’, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • R 3 , R 4 , R 22 , R 60 , m, and p are as defined above.
  • m is 1 and p is 0.
  • m is 2 and p is 0.
  • m is 3 and p is 0.
  • the invention is the use of an effective amount of a compound of Formula IIc, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • R 3 is hydrogen
  • R 1 when Y is NR 1 R 2 , R 1 is methyl and R 2 is hydrogen. In one embodiment of Formula IIc, when Y is NR 1 R 2 , both R 1 and R 2 are methyl.
  • R 1 when Y is NR 1 R 2 , R 1 is methyl and R 2 is cyclopropyl. In one embodiment of Formula IIc, when Y is NR 1 R 2 , R 1 is cyclopropyl and R 2 is hydrogen.
  • R 4 is a stabilized phosphoramidate.
  • the invention is the use of an effective amount of a compound of Formula IId, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • Y, R 3 , R 4 , and R 22 are as defined above.
  • R 3 is hydrogen
  • R 1 when Y is NR 1 R 2 , R 1 is methyl and R 2 is hydrogen. In one embodiment of Formula IId, when Y is NR 1 R 2 , both R 1 and R 2 are methyl.
  • R 1 when Y is NR 1 R 2 , R 1 is cyclopropyl and R 2 is hydrogen. In an alternative embodiment of Formula IId, when Y is NR 1 R 2 , R 1 is cyclopropyl and R 2 is cyclopropyl.
  • R 1 is cyclopentyl and R 2 is hydrogen.
  • R 4 is a stabilized phosphoramidate.
  • the invention is the use of an effective amount of a compound of Formula IIe, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • Y, R 3 , R 4 , and R 22 are as defined above.
  • R 3 is hydrogen
  • Formula IIe when Y is NR 1 R 2 , R 1 is methyl and R 2 is hydrogen. In one embodiment of Formula IIe, when Y is NR 1 R 2 , R 1 is methyl and R 2 is cyclopropyl. In an alternative embodiment of Formula IIe, when Y is NR 1 R 2 , R 1 is cyclopropyl and R 2 is cyclopropyl.
  • R 1 is cyclopentyl and R 2 is hydrogen.
  • R 4 is a stabilized phosphoramidate.
  • the invention is the use of an effective amount of a compound of Formula III, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • R 7 is hydrogen, C1-6alkyl; C3-7cycloalkyl; heteroaryl, heterocyclic, or aryl, which includes, but is not limited to, phenyl or naphthyl, where phenyl or naphthyl are optionally substituted with C1-6alkyl, C2-6alkenyl, C2-6 alkynyl, C1-6alkoxy, F, Cl, Br, I, nitro, cyano, C1- 6haloalkyl, -N(R 7' )2, C1-6acylamino, NHSO2C1-6alkyl, -SO2N(R 7' )2, COR 7" , and -SO2C1-6alkyl; (R 7' is independently hydrogen or C 1-6 alkyl; R 7" is–OR 11 or-N(R 7 ) 2 );
  • R 8 is hydrogen, C 1-6 alkyl, or R 9a or R 9b and R 8 together are (CH 2 ) n so as to form a cyclic ring that includes the adjoining N and C atoms; where n is 2 to 4;
  • R 10 is hydrogen, C 1-6 alkyl optionally substituted with an alkoxy, di(lower alkyl)-amino, or halogen; C 1-6 haloalkyl, C 3-7 cycloalkyl, heterocycloalkyl, aminoacyl, aryl, such as phenyl; heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl;
  • R 11 is an optionally substituted C 1-6 alkyl, an optionally substituted cycloalkyl; an optionally substituted C 2-6 alkynyl, an optionally substituted C 2-6 alkenyl, or optionally substituted acyl;
  • R 11' is hydrogen, an optionally substituted C1-6alkyl, an optionally substituted cycloalkyl; an optionally substituted C 2-6 alkynyl, an optionally substituted C 2-6 alkenyl, or optionally substituted acyl; and
  • the variables Y, R 3 , R 12 and R 13 are described herein.
  • the invention is the use of an effective amount of a compound of Formula IIIa, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the phosphoramidate is in the L- configuration.
  • the phosphoramidate is in the D- configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the L-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the D-configuration.
  • R 3 is hydrogen, , diphosphate, triphosphate, an optionally substituted carbonyl linked amino acid, or -C(O)R 3C ;
  • the invention is the use of an effective amount of a compound of Formula IIIb, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the phosphoramidate is in the L- configuration.
  • the phosphoramidate is in the D- configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the L-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the D-configuration.
  • the invention is the use of an effective amount of a compound of Formula IIIb’, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • m is 1 and p is 0.
  • m is 2 and p is 0.
  • m is 3 and p is 0.
  • m is 2
  • p is 0, and R 3 is hydrogen.
  • the phosphoramidate is in the L-configuration. In one embodiment of Formula IIIb’, the phosphoramidate is in the D-configuration. In one embodiment of Formula IIIb’, R 7 is phenyl, R 8 is hydrogen, R 9a is methyl, R 9b is hydrogen, and R 10 is isopropyl and the phosphoramide is in the L-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the D-configuration.
  • R 3 is hydrogen, m is 2, p is 0, R 7 is phenyl, R 8 is hydrogen, R 9a is methyl, R 9b is hydrogen, and R 10 is isopropyl.
  • R 3 is hydrogen, m is 3, p is 0, R 7 is phenyl, R 8 is hydrogen, R 9a is methyl, R 9b is hydrogen, and R 10 is isopropyl.
  • the invention is the use of an effective amount of a compound of Formula IIIc, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the phosphoramidate is in the L- configuration.
  • the phosphoramidate is in the D- configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the L-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the D-configuration.
  • the invention is the use of an effective amount of a compound of Formula IIId or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the phosphoramidate is in the L- configuration.
  • the phosphoramidate is in the D- configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the L-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the D-configuration.
  • the invention is the use of an effective amount of a compound of Formula IIIe, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the phosphoramidate is in the L- configuration.
  • the phosphoramidate is in the D- configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the L-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the D-configuration.
  • the invention is the use of an effective amount of a compound of Formula IV or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the phosphoramidate is in the L- configuration.
  • the phosphoramidate is in the D- configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the L-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the D-configuration.
  • the invention is the use of an effective amount of a compound of Formula IVa, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the phosphoramidate is in the L- configuration.
  • the phosphoramidate is in the D- configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the L-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the D-configuration.
  • R 3 is independently selected from
  • the invention is the use of an effective amount of a compound of Formula IVb, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the phosphoramidate is in the L- configuration.
  • the phosphoramidate is in the D- configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the L-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the D-configuration.
  • the invention is the use of an effective amount of a compound of Formula IVb’, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a h in l in h m n in n h r f
  • m is 2 and p is 0.
  • m is 3 and p is 0.
  • m is 2
  • p is 0, and R 3 is hydrogen.
  • m is 2, p is 0, R 22 is NR 5 R 6 , and R 3 is hydrogen.
  • the phosphoramidate is in the L-configuration.
  • the phosphoramidate is in the D-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the L-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the D-configuration.
  • the invention is the use of an effective amount of a compound of Formula IVc, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the phosphoramidate is in the L- configuration.
  • the phosphoramidate is in the D- configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the L-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the D-configuration.
  • the invention is the use of an effective amount of a compound of Formula IVd, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the phosphoramidate is in the L- configuration.
  • the phosphoramidate is in the D- configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the L-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the D-configuration.
  • the invention is the use of an effective amount of a compound of Formula IVe, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the phosphoramidate is in the L- configuration.
  • the phosphoramidate is in the D- configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the L-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the D-configuration.
  • compounds of Formula V are disclosed.
  • the invention is a method for the treatment of an infection of an RNA virus in a host, including a human in need thereof, comprising administering an effective amount of a compound of Formula V or a pharmaceutically acceptable salt thereof.
  • the method includes administration of an effective amount of a compound of Formula V for the treatment of a single-stranded RNA positive stranded virus other than a hepacivirus or other than HCV in a host, including a human in need thereof.
  • the method includes administration of an effective amount of a compound of Formula V for the treatment of a single-stranded RNA positive stranded virus of the Flaviviridae family, including but not limited to Dengue virus 2 and Yellow Fever, in a host, including a human in need thereof.
  • the method includes administration of an effective amount of a compound of Formula V for the treatment of a single-stranded RNA negative-sense virus in a host, including a human in need thereof. In an alternative embodiment, the method includes administration of an effective amount of a compound of Formula V for the treatment of a double-stranded RNA virus in a host, including a human in need thereof.
  • R 50 is selected from hydrogen, NH 2 , and R 22 ;
  • R 62 is hydrogen, CH3, CH2F, CHF2, CF3, or ethynyl
  • R 63 is hydrogen, fluoro, chloro, bromo, N3, NH2, CN or OR 3 ;
  • R 65 is C 1 -C 3 alkyl (including, methyl, ethyl, isopropyl, and cyclopropyl) or C 1 - 3 haloalkyl (including CH 2 F, CHF 2 , and CF 3 ); and
  • R 3 , R 4 , R 5 , and R 22 are as defined above.
  • R 3 is hydrogen
  • R 65 is methyl. In one embodiment of Formula V, R 50 is hydrogen.
  • R 50 is -NH 2 .
  • Q is CHR 65
  • R 3 is hydrogen
  • R 65 is methyl
  • R 50 is hydrogen
  • compounds of Formula Va are disclosed.
  • the invention is the use of an effective amount of a compound of Formula Va, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • R 3 , R 4 , and R 50 are defined as above.
  • R 3 is hydrogen
  • R 65 is methyl
  • R 50 is hydrogen
  • R 50 is -NH 2 .
  • Q is CHR 65
  • R 3 is hydrogen
  • R 65 is methyl
  • R 50 is hydrogen
  • Q is CHR 65
  • R 3 is hydrogen
  • R 65 is cyclopropyl
  • R 50 is hydrogen.
  • compounds of Formula Vb are disclosed.
  • the invention is the use of an effective amount of a compound of Formula Vb, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • R 3 , R 4 , and R 50 are defined as above.
  • R 3 is hydrogen
  • R 65 is methyl
  • R 50 is hydrogen
  • R 50 is -NH 2 .
  • Q is CHR 65
  • R 3 is hydrogen
  • R 65 is methyl
  • R 50 is hydrogen
  • Q is CHR 65
  • R 3 is hydrogen
  • R 65 is cyclopropyl
  • R 50 is hydrogen.
  • compounds of Formula Vc are disclosed.
  • the invention is the use of an effective amount of a compound of Formula Vc, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • R 3 is hydrogen.
  • R 65 is methyl
  • R 50 is hydrogen
  • R 50 is -NH 2 .
  • Q is CHR 65
  • R 3 is hydrogen
  • R 65 is methyl
  • R 50 is hydrogen
  • Q is CHR 65
  • R 3 is hydrogen
  • R 65 is cyclopropyl
  • R 50 is hydrogen.
  • compounds of Formula Vd are disclosed.
  • the invention is the use of an effective amount of a compound of Formula Vd, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • R 3 , R 4 , and R 50 are defined as above.
  • R 3 is hydrogen
  • R 65 is methyl
  • R 50 is hydrogen
  • R 50 is -NH 2 .
  • Q is CHR 65
  • R 3 is hydrogen
  • R 65 is methyl
  • R 50 is hydrogen
  • Q is CHR 65
  • R 3 is hydrogen
  • R 65 is cyclopropyl
  • R 50 is hydrogen.
  • compounds of Formula Ve are disclosed.
  • the invention is the use of an effective amount of a compound of Formula Ve, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • R 3 , R 4 , and R 50 are defined as above.
  • R 3 is hydrogen
  • R 65 is methyl
  • R 50 is hydrogen
  • R 50 is -NH 2 .
  • Q is CHR 65
  • R 3 is hydrogen
  • R 65 is methyl
  • R 50 is hydrogen
  • Q is CHR 65
  • R 3 is hydrogen
  • R 65 is cyclopropyl
  • R 50 is hydrogen.
  • compounds of Formula Vf are disclosed.
  • the invention is the use of an effective amount of a compound of Formula Vf, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • R 3 , R 4 , and R 50 are defined as above.
  • R 3 is hydrogen
  • R 65 is methyl
  • R 50 is hydrogen
  • R 50 is -NH 2 .
  • Q is CHR 65
  • R 3 is hydrogen
  • R 65 is methyl
  • R 50 is hydrogen
  • Q is CHR 65
  • R 3 is hydrogen
  • R 65 is cyclopropyl
  • R 50 is hydrogen.
  • compounds of Formula VI are disclosed.
  • the invention is the use of an effective amount of a compound of Formula VI, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • R 3 , R 7 , R 8 , R 9a , R 9b , R 10 , R 50 , R 62 , and R 63 are defined as above.
  • R 3 is hydrogen. In one embodiment of Formula VI, R 65 is methyl.
  • R 50 is hydrogen
  • R 50 is -NH 2 .
  • Q is CHR 65
  • R 3 is hydrogen
  • R 65 is methyl
  • R 50 is hydrogen
  • the phosphoramidate is in the L-configuration.
  • the phosphoramidate is in the D-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the L-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the D-configuration.
  • compounds of Formula VIa are disclosed.
  • the invention is the use of an effective amount of a compound of Formula Via, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • R 3 , R 3A , R 3B , R 3C , R 3D , R 7 , R 8 , R 9a , R 9b , R 10 , and R 50 are defined as above.
  • R 3 is hydrogen
  • R 65 is methyl
  • R 50 is hydrogen
  • R 50 is -NH 2 .
  • Q is CHR 65
  • R 3 is hydrogen
  • R 65 is methyl
  • R 50 is hydrogen.
  • the phosphoramidate is in the L-configuration.
  • the phosphoramidate is in the D-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the L-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the D-configuration.
  • Q is CHR 65 , R 3 is hydrogen, R 7 is phenyl, R 8 is hydrogen, R 9a is methyl, R 9b is hydrogen, and R 10 is isopropyl.
  • Q is CHR 65 , R 3 is hydrogen, R 65 is methyl, R 50 is hydrogen, R 7 is phenyl, R 8 is hydrogen, R 9a is methyl, R 9b is hydrogen, and R 10 is isopropyl.
  • R 3 is independently selected from hydrogen, , diphosphate, triphosphate, an optionally substituted carbonyl linked amino acid, or -C(O)R 3C .
  • compounds of Formula VIb are disclosed.
  • the invention is the use of an effective amount of a compound of Formula VIb, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • R 3 is hydrogen.
  • R 65 is methyl
  • R 50 is hydrogen
  • R 50 is -NH 2 .
  • Q is CHR 65
  • R 3 is hydrogen
  • R 65 is methyl
  • R 50 is hydrogen
  • the phosphoramidate is in the L-configuration.
  • the phosphoramidate is in the D-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the L-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the D-configuration.
  • Q is CHR 65
  • R 3 is hydrogen
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl.
  • Formula VIb Q is CHR 65 , R 3 is hydrogen, R 65 is methyl, R 50 is hydrogen, R 7 is phenyl, R 8 is hydrogen, R 9a is methyl, R 9b is hydrogen, and R 10 is isopropyl.
  • compounds of Formula VIc are disclosed.
  • the invention is the use of an effective amount of a compound of Formula Vic, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • R 3 , R 7 , R 8 , R 9a , R 9b , R 10 , and R 50 are defined as above.
  • R 3 is hydrogen. In one embodiment of Formula VIc, R 65 is methyl.
  • R 50 is hydrogen
  • R 50 is -NH 2 .
  • Q is CHR 65
  • R 3 is hydrogen
  • R 65 is methyl
  • R 50 is hydrogen
  • the phosphoramidate is in the L-configuration.
  • the phosphoramidate is in the D-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the L-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the D-configuration.
  • Q is CHR 65 , R 3 is hydrogen, R 7 is phenyl, R 8 is hydrogen, R 9a is methyl, R 9b is hydrogen, and R 10 is isopropyl.
  • Formula VIc Q is CHR 65 , R 3 is hydrogen, R 65 is methyl, R 50 is hydrogen, R 7 is phenyl, R 8 is hydrogen, R 9a is methyl, R 9b is hydrogen, and R 10 is isopropyl.
  • compounds of Formula VId are disclosed.
  • the invention is the use of an effective amount of a compound of Formula Vid, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • R 3 , R 7 , R 8 , R 9a , R 9b , R 10 , and R 50 are defined as above.
  • R 3 is hydrogen
  • R 65 is methyl. In one embodiment of Formula VId, R 50 is hydrogen.
  • R 50 is -NH 2 .
  • the phosphoramidate is in the L-configuration.
  • the phosphoramidate is in the D-configuration.
  • Q is CHR 65
  • R 3 is hydrogen
  • R 65 is methyl
  • R 50 is hydrogen
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the L-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the D-configuration.
  • Q is CHR 65 , R 3 is hydrogen, R 7 is phenyl, R 8 is hydrogen, R 9a is methyl, R 9b is hydrogen, and R 10 is isopropyl.
  • Q is CHR 65 , R 3 is hydrogen, R 65 is methyl, R 50 is hydrogen, R 7 is phenyl, R 8 is hydrogen, R 9a is methyl, R 9b is hydrogen, and R 10 is isopropyl.
  • compounds of Formula Vie are disclosed.
  • the invention is the use of an effective amount of a compound of Formula Vie, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • R 3 , R 7 , R 8 , R 9a , R 9b , R 10 , and R 50 are defined as above.
  • R 3 is hydrogen
  • R 65 is methyl
  • R 50 is hydrogen. In one embodiment of Formula VIe, R 50 is -NH 2 .
  • Q is CHR 65
  • R 3 is hydrogen
  • R 65 is methyl
  • R 50 is hydrogen
  • the phosphoramidate is in the L-configuration.
  • the phosphoramidate is in the D-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the L-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the D-configuration.
  • Q is CHR 65 , R 3 is hydrogen, R 7 is phenyl, R 8 is hydrogen, R 9a is methyl, R 9b is hydrogen, and R 10 is isopropyl.
  • Q is CHR 65 , R 3 is hydrogen, R 65 is methyl, R 50 is hydrogen, R 7 is phenyl, R 8 is hydrogen, R 9a is methyl, R 9b is hydrogen, and R 10 is isopropyl.
  • compounds of Formula VIf are disclosed.
  • the invention is the use of an effective amount of a compound of Formula VIf, or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • R 3 , R 7 , R 8 , R 9a , R 9b , R 10 , and R 50 are defined as above.
  • R 3 is hydrogen
  • R 65 is methyl
  • R 50 is hydrogen
  • R 50 is -NH 2 .
  • Q is CHR 65
  • R 3 is hydrogen
  • R 65 is methyl
  • R 50 is hydrogen.
  • the phosphoramidate is in the L-configuration.
  • the phosphoramidate is in the D-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the L-configuration.
  • R 7 is phenyl
  • R 8 is hydrogen
  • R 9a is methyl
  • R 9b is hydrogen
  • R 10 is isopropyl and the phosphoramide is in the D-configuration.
  • Q is CHR 65 , R 3 is hydrogen, R 7 is phenyl, R 8 is hydrogen, R 9a is methyl, R 9b is hydrogen, and R 10 is isopropyl.
  • Q is CHR 65 , R 3 is hydrogen, R 65 is methyl, R 50 is hydrogen, R 7 is phenyl, R 8 is hydrogen, R 9a is methyl, R 9b is hydrogen, and R 10 is isopropyl.
  • the phosphorus in any of the Formulas above may be chiral and thus can be provided as an R or S enantiomer or mixture thereof, including a racemic mixture.
  • compounds, methods, and compositions are provided for the treatment of a host infected with an RNA virus described herein, for example, other than a hepacivirus or HCV.
  • the compounds of the invention can be administered in an effective amount alone or in combination with another anti-RNA viral agent to treat the infected host in need thereof.
  • it is useful to administer a combination of drugs that modulate the same or a different pathway or inhibit a different target in the virus.
  • the disclosed 2'-substituted-N 6 -substituted purine nucleotides are polymerase inhibitors, it can be advantageous to administer the compound to a host in combination with a protease inhibitor or an NS5A inhibitor.
  • the compounds of the invention can also be administered in combination with a structurally different polymerase inhibitor such as another compound described herein or otherwise known to those in the art.
  • the compounds of the invention can also be administered in combination with ribavirin and/or interferon.
  • the 2'-substituted-N 6 -substituted purine nucleotides of the invention are typically administered orally, for example in pill or tablet form, but may be administered via another route which the attending physician considers appropriate, including via intravenous, transdermal, subcutaneous, topical, parenteral, or other suitable route.
  • the invention disclosed herein are compounds and their uses, methods, and compositions as described herein for the treatment of infections in or exposure to humans or another host animal to an RNA virus that includes the administration of an effective amount of a compound of Formula I, Formula II, Formula III, Formula IV, Formula V, or Formula VI as described herein or a pharmaceutically acceptable salt or prodrug thereof, optionally in a pharmaceutically acceptable carrier.
  • the compounds described herein either possess anti-RNA activity, or are metabolized to a compound that exhibits such activity.
  • the method includes the administration of a compound of Formula I, Formula II, Formula III, Formula IV, Formula V, or Formula VI or a pharmaceutically acceptable salt thereof for the treatment of an infection of a single-stranded RNA positive stranded virus other than a hepacivirus or other than HCV in a host in need thereof, including a human.
  • a method that includes the administration of a compound of Formula I, Formula II, Formula III, Formula IV, Formula V, or Formula VI or a pharmaceutically acceptable salt thereof for the treatment of an infection of a single-stranded RNA positive stranded virus of the Flaviviridae family, including but not limited to Dengue virus 2 and Yellow Fever, in a host in need thereof, including a human.
  • a method is presented that includes the administration of a compound of Formula I, Formula II, Formula III, Formula IV, Formula V, or Formula VI or a pharmaceutically acceptable salt thereof for the treatment of an infection of a single-stranded RNA negative-sense virus in a host in need thereof, including a human.
  • a method in an alternative embodiment, includes the administration of a compound of Formula I, Formula II, Formula III, Formula IV, Formula V, or Formula VI or a pharmaceutically acceptable salt thereof for the treatment of an infection of a double-stranded RNA virus in a host in need thereof, including a human.
  • the compounds and compositions can also be used to treat conditions related to or occurring as a result of an RNA viral exposure.
  • the compounds or formulations that include the compounds can also be used prophylactically to prevent or retard the progression of clinical illness in individuals who are RNA virus antibody- or RNA virus antigen-positive.
  • the compounds described herein are provided in the ⁇ -D- configuration.
  • the compounds can be provided in a ⁇ -L- configuration.
  • any substituent group that exhibits chirality can be provided in racemic, enantiomeric, diastereomeric form or any mixture thereof.
  • a phosphoramidate, thiophosphoramidate or other stabilized phosphorus prodrug in which the phosphorus exhibits chirality is used as the R 4 stabilized phosphate prodrug, it can be provided as an R or S chiral phosphorus derivative or a mixture thereof, including a racemic mixture.
  • the amino acid of the phosphoramidate or thiophosphoramidate can be in the D- or L-configuration, or a mixture thereof, including a racemic mixture. All of the combinations of these stereo configurations are included in the invention described herein.
  • the present invention includes the following features:
  • a pharmaceutical formulation comprising an effective host-treating amount of the Formulas I-VI or a pharmaceutically acceptable salt or prodrug thereof together with a pharmaceutically acceptable carrier or diluent to treat an RNA virus other than a hepacivirus or other than HCV.
  • active compounds of the invention are those depicted, for example, in Formula I which can be provided in a pharmaceutically acceptable composition, salt or prodrug thereof:
  • Y is NR 1 R 2 ;
  • R 1 is C1-C5alkyl (including methyl, ethyl, n-propyl, iso-propyl, n-butyl, iso-butyl, sec- butyl, tert-butyl and pentyl), C1-C5haloalkyl (including CH2F, CH2F, CF3, CH2CF3, CF2CH3 and CF 2 CF 3 ), C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, –(C 0 -C 2 alkyl)(C 3 -C 6 cycloalkyl), –(C 0 - C2alkyl)(heterocycle), –(C0-C2alkyl)(aryl), –(C0-C2alkyl)(heteroaryl), –OR 25 , -C(O)R 3C (including–C(O)CH3,–C(O)CH2CH3-C(O)CH(
  • R 2 is hydrogen, optionally substituted C1-C5alkyl (including methyl, ethyl, n-propyl, iso- propyl, n-butyl, iso-butyl, sec-butyl, tert-butyl and pentyl), C 1 -C 5 haloalkyl (including CHF 2 , CH2F, CF3, CH2CF3 and CF2CF3), optionally substituted –(C0-C2alkyl)(C3-C6cycloalkyl), optionally substituted–(C0-C2alkyl)(heterocycle), optionally substituted–(C0-C2alkyl)(aryl), optionally substituted –(C 0 -C 2 alkyl)(heteroaryl), -C(O)R 3C (including –C(O)CH 3 , – C(O)CH2CH3-C(O)CH(CH3)2, -C(O)OCH3, -
  • R 1 and R 2 is methyl, CH 2 F, CHF 2 or CF 3 ;
  • R 3 is hydrogen, diphosphate, triphosphate, an optionally substituted carbonyl linked amino acid, or -C(O)R 3C ;
  • R 3A can be selected from O-, OH, an–O-optionally substituted aryl, an–O-optionally substituted heteroaryl, or an optionally substituted heterocyclyl;
  • R 3B can be selected from O-, OH, an optionally substituted N-linked amino acid or an optionally substituted N-linked amino acid ester;
  • R 3C is alkyl, alkenyl, alkynyl, -(C0-C2)(cycloalkyl), -(C0-C2)(heterocyclo), -(C0-C2)(aryl), -(C0-C2)(heteroaryl), -O-alkyl, -O-alkenyl, -O-alkynyl, -O-(C0-C2)(cycloalkyl), -O-(C0- C 2 )(heterocyclo), -O-(C 0 -C 2 )(aryl), or -O-(C 0 -C 2 )(heteroaryl), each of which can be optionally substituted;
  • R 4 is a monophosphate, diphosphate, triphosphate, or a stabilized phosphate prodrug, including but not limited to a phosphoramidate, a thiophosphoramidate, or any other moiety that is metabolized to a monophosphate, diphosphate or triphosphate in vivo in the host human or animal; or
  • R 3 and R 4 together with the oxygens that they are bonded to can form a 3’,5’-cyclic prodrug, including but not limited to, a 3’,5’-cyclic phosphate prodrug;
  • R 12 is hydrogen, CH3, CH2F, CHF2, CF3, or ethynyl
  • R 13 is hydrogen, fluoro, chloro, bromo, N3, NH2, CN or OR 3 ;
  • R 12 is methyl
  • R 13 is bromo, chloro, N 3 , NH 2 , CN or OR 3 .
  • a stabilized phosphate prodrug is any moiety that can deliver a mono, di, or triphosphate.
  • at least one of R 1 and R 2 is cyclopropyl.
  • At least one of R 1 and R 2 is cyclopently.
  • the invention is the use of an effective amount of a compound of Formula Ia or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • Y, R 3 and R 4 are as defined above.
  • the invention is the use of an effective amount of a compound of Formula Ib or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • Y, R 3 and R 4 are as defined above.
  • the invention is the use of an effective amount of a compound of Formula Ib’ or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the invention is the use of an effective amount of a compound of Formula Ic or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • Y, R 3 and R 4 are as defined above.
  • the invention is the use of an effective amount of a compound of Formula Id or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • Y, R 3 and R 4 are as defined above.
  • the invention is the use of an effective amount of a compound of Formula Ie or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • Y, R 3 and R 4 are as defined above.
  • the invention is the use of an effective amount of a compound of Formula II or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • Y, R 3 , R 4 , R 12 , R 13 and R 22 are as defined above.
  • the invention is the use of an effective amount of a compound of Formula IIa or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • Y, R 3 , R 4 and R 22 are as defined above.
  • the invention is the use of an effective amount of a compound of Formula IIb or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • Y, R 3 , R 4 and R 22 are as defined above.
  • the invention is the use of an effective amount of a compound of Formula IIb’ or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • R 3 , R 4 , R 22 , R 60 , m, and p are as defined above.
  • the invention is the use of an effective amount of a compound of Formula IIc or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • Y, R 3 , R 4 , and R 22 are as defined above.
  • the invention is the use of an effective amount of a compound of Formula lid or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • Y, R 3 , R 4 , and R 22 are as defined above.
  • the invention is the use of an effective amount of a compound of Formula He or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • Y, R 3 , R 4 , and R 22 are as defined above.
  • the invention is the use of an effective amount of a compound of Formula III or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the invention is the use of an effective amount of a compound of Formula IIIa or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the invention is the use of an effective amount of a compound of Formula IIIb or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the invention is the use of an effective amount of a compound of Formula IIIb’ or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the invention is the use of an effective amount of a compound of Formula IIIc or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the invention is the use of an effective amount of a compound of Formula IIId or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the invention is the use of an effective amount of a compound of Formula IIIe or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the invention is the use of an effective amount of a compound of Formula IV or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the invention is the use of an effective amount of a compound of Formula IVa or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including
  • the invention is the use of an effective amount of a compound of Formula IVb or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the invention is the use of an effective amount of a compound of Formula IVb’ or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host includin a human in need thereof.
  • the invention is the use of an effective amount of a compound of Formula IVc or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the invention is the use of an effective amount of a compound of Formula IVd or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the invention is the use of an effective amount of a compound of Formula IVe or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the invention is the use of an effective amount of a compound of Formula V or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the invention is the use of an effective amount of a compound of Formula V or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • R 3 , R 4 , R 50 , and Q are defined above.
  • the invention is the use of an effective amount of a compound of Formula Vb or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • R 3 , R 4 , R 50 , and Q are defined above.
  • the invention is the use of an effective amount of a compound of Formula Vc or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • R 3 , R 4 , R 50 , and Q are defined above.
  • the invention is the use of an effective amount of a compound of Formula Vd or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • R 3 , R 4 , R 50 , and Q are defined above.
  • the invention is the use of an effective amount of a compound of Formula Ve or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • R 3 , R 4 , R 50 , and Q are defined above.
  • the invention is the use of an effective amount of a compound of Formula Vf or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • R 3 , R 4 , R 50 , and Q are defined above.
  • the invention is the use of an effective amount of a compound of Formula VI or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the invention is the use of an effective amount of a compound of Formula VIa or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the invention is the use of an effective amount of a compound of Formula VIb or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the invention is the use of an effective amount of a compound of Formula VIc or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the invention is the use of an effective amount of a compound of Formula VId or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the invention is the use of an effective amount of a compound of Formula VIe or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the invention is the use of an effective amount of a compound of Formula VIf or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof.
  • the compound is a ⁇ -D isomer with reference to the corresponding nucleoside (i.e., in the naturally occurring configuration).
  • the compound is provided as a ⁇ -L isomer.
  • the compound is typically at least 90% free of the opposite enantiomer, and can be at least 95%, 96%, 97%, 98%, 99% or even 100% free of the opposite enantiomer. Unless described otherwise, the compound is at least 90% free of the opposite enantiomer. Metabolism of ⁇ -D-2'-deoxy-2'- ⁇ -fluoro-2'- ⁇ -C-substituted-N 6 -substituted-2,6- diaminopurine nucleotides
  • the metabolism of the ⁇ -D-2'-deoxy-2'- ⁇ -fluoro-2'- ⁇ -ethynyl-N 6 -methyl-2,6- diaminopurine nucleoside phosphoramidate involves the production of a 5’-monophosphate and the subsequent anabolism of the N 6 -methyl-2,6-diaminopurine base to generate the ⁇ -D-2'- deoxy-2'- ⁇ -fluoro-2'- ⁇ -ethynylguanine nucleoside as the 5’-monophosphate.
  • the monophosphate is then further anabolized to the active species; the 5’-triphosphate.
  • the metabolism of the ⁇ -D-2'-deoxy-2'- ⁇ -fluoro-2'- ⁇ -ethynyl-N 6 -dimethyl-2,6- diaminopurine nucleotide involves both the formation of the ⁇ -D-2'-deoxy-2'- ⁇ -fluoro-2'- ⁇ - ethynyl-N 6 -dimethyl-2,6-diaminopurine nucleoside triphosphate as well as the generation of the corresponding guanine nucleoside triphosphate. These metabolic pathways are illustrated in Schemes 2 and 3 below.
  • Stabilized phosphate prodrugs are moieties that can deliver a mono, di, or triphosphate in vivo.
  • McGuigan has disclosed phosphoramidates in US Patent Nos.: 8,933,053; 8,759,318; 8,658,616; 8,263,575; 8,119,779; 7,951,787 and 7,115,590.
  • Alios has disclosed thiophosphoramidates in US 8,895,723 and 8,871,737 incorporated by reference herein.
  • Alios has also disclosed cyclic nucleotides in US Patent No. 8,772,474 incorporated by reference herein.
  • Idenix has disclosed cyclic phosphoramidates and phosphoramidate/SATE derivatives in WO 2013/177219 incorporated by reference herein. Idenix has also disclosed substituted carbonyloxymethylphosphoramidate compounds in WO 2013/039920 incorporated by reference herein.
  • Hostetler has disclosed lipid phosphate prodrugs, see, for example, US 7,517,858 incorporated by reference herein. Hostetler has also disclosed lipid conjugates of phosphonate prodrugs, see, for example, US 8,889,658; 8,846,643; 8,710,030; 8,309,565; 8,008,308; and 7,790,703.
  • Emory University has disclosed nucleotide sphingoid and lipid derivatives in WO 2014/124430 incorporated by reference herein.
  • RFS Pharma has disclosed purine nucleoside monophosphate prodrugs in WO 2010/091386.
  • Cocrystal Pharma Inc. has also disclosed purine nucleoside monophosphate prodrugs in US Patent No.: 9,173,893 incorporated by reference herein.
  • HepDirect TM technology is disclosed in the article "Design, Synthesis, and Characterization of a Series of Cytochrome P(450) 3A-Activated Prodrugs (HepDirect Prodrugs) Useful for Targeting Phosph(on)ate-Based Drugs to the Liver," (J. Am. Chem. Soc.
  • Additional phosphate prodrugs include, but are not limited to phosphate esters, 3’,5’-cyclic phosphates including CycloSAL, SATE derivatives (S-acyl-2thioesters) and DTE (dithiodiethyl) prodrugs.
  • CycloSAL CycloSAL
  • SATE derivatives S-acyl-2thioesters
  • DTE dithiodiethyl
  • the stabilized phosphate prodrugs include, but are not limited to those described in U.S. Patent No. 9,173,893 and U.S. Patent No. 8,609,627, incorporated by reference herein, including for processes of preparation.
  • 5’- prodrugs of Formula I, Formula II, Formula III, Formula IV, Formula V, and Formula VI can be represented by the group:
  • 3’,5’-prodrugs of Formula I-VI can be represented by the group:
  • Z is O or S;
  • R 33 is selected from OR 34 , fatty alcohol derived (for example but not limited to: )
  • R 34 , R 35 , and R 36 are as defined below;
  • R 31 and R 32 when administered in vivo, are capable of providing the nucleoside monophosphate or thiomonophosphate, which may or may not be partially or fully resistant to 6-NH2 deamination in a biological system.
  • Representative R 31 and R 32 are independently selected from: (a) OR 34 where R 34 is selected from H, Li, Na, K, phenyl and pyridinyl; phenyl and pyridinyl are substituted with one to three substituents independently selected from the group consisting of (CH2)0-6CO2R 37 and (CH2)0-6CON(R 37 )2;
  • R 37 is independently H, C 1-20 alkyl, the carbon chain derived from a fatty alcohol (such as oleyl alcohol, octacosanol, triacontanol, linoleyl alcohol, and etc) or C1-20 alkyl substituted with a lower alkyl, alkoxy, di(lower alkyl)-amino, fluoro, C3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl; wherein the substituents are C1-5 alkyl, or C1-5 alkyl substituted with a lower alkyl, alkoxy, di(lower alkyl)-amino, fluoro, C3-10 cycloalkyl, or cycloalkyl;
  • a fatty alcohol such as oleyl alcohol,
  • R 36 is restricted to those sidechains occurring in natural L-amino acids
  • R 35 is H, C 1-20 alkyl, the carbon chain derived from a fatty alcohol (such as oleyl alcohol, octacosanol, triacontanol, linoleyl alcohol, and etc) or C1-20 alkyl substituted with a lower alkyl, alkoxy, di(lower alkyl)-amino, fluoro, C3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl; wherein the substituents are C 1-5 alkyl, or C 1-5 alkyl substituted with a lower alkyl, alkoxy, di(lower alkyl)-amino, fluoro, C3-10 cycloalkyl, or cycloalkyl;
  • a fatty alcohol such as oleyl alcohol,
  • R 31 and R 32 can come together to form a ring
  • R 38 is H, C1-20 alkyl, C1-20 alkenyl, the carbon chain derived from a fatty alcohol (such as oleyl alcohol, octacosanol, triacontanol, linoleyl alcohol, etc) or C 1-20 alkyl substituted with a lower alkyl, alkoxy, di(lower alkyl)-amino, fluoro, C3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aryl, such as phenyl, heteroaryl, such as, pyridinyl, substituted aryl, or substituted heteroaryl; wherein the substituents are C 1-5 alkyl, or C 1-5 alkyl substituted with a lower alkyl, alkoxy, di(lower alkyl)-amino, fluoro, C 3-10 cycloalkyl, or cycloalkyl;
  • a fatty alcohol such as
  • R 31 and R 32 can come together to form a ring selected from
  • R 39 is O or NH
  • R 40 is selected from H, C1-20 alkyl, C1-20 alkenyl, the carbon chain derived from a fatty acid (such as oleic acid, linoleic acid, and the like), and C 1-20 alkyl substituted with a lower alkyl, alkoxy, di(lower alkyl)-amino, fluoro, C 3-10 cycloalkyl, cycloalkyl alkyl, cycloheteroalkyl, aryl, such as phenyl, heteroaryl, such as pyridinyl, substituted aryl, or substituted heteroaryl; wherein the substituents are C1-5 alkyl, or C1-5 alkyl substituted with a lower alkyl, alkoxy, di(lower alkyl)- amino, fluoro, C 3-10 cycloalkyl, or cycloalkyl.
  • a fatty acid such as oleic acid, linoleic acid, and the like
  • the compounds can be prepared, for example, by preparing the 5′-OH analogs, then converting these to the monophosphate analogs.
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is hydrogen, R 3 is hydrogen, R 4 is a stabilized phosphate prodrug;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is hydrogen, R 3 is hydrogen, and R 4 is a stabilized thiophosphate prodrug;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is hydrogen, R 3 is hydrogen, and R 4 is a phosphoramidate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is hydrogen, R 3 is hydrogen, and R 4 is a thiophosphoramidate:
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is hydrogen, R 3 is hydrogen, and R 4 is a monophosphate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is hydrogen, R 3 is hydrogen, and R 4 is a diphosphate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is hydrogen, R 3 is hydrogen, and R 4 is a triphosphate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is methyl, R 3 is hydrogen, R 4 is a stabilized phosphate prodrug;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is methyl, R 3 is hydrogen, and R 4 is a stabilized thiophosphate prodrug;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is methyl, R 3 is hydrogen, and R 4 is a phosphoramidate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is methyl, R 3 is hydrogen, and R 4 is a thiophosphoramidate: (xii) in Formula Ia, Y is NR 1 R 2 , R 1 is methyl, R 2 is methyl, R 3 is hydrogen, and R 4 is a monophosphate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is methyl, R 3 is hydrogen, and R 4 is a diphosphate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is methyl, R 3 is hydrogen, and R 4 is a triphosphate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is cyclopropyl, R 3 is hydrogen, R 4 is a stabilized phosphate prodrug;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is cyclopropyl, R 3 is hydrogen, and R 4 is a stabilized thiophosphate prodrug;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is cyclopropyl, R 3 is hydrogen, and R 4 is a phosphoramidate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is cyclopropyl, R 3 is hydrogen, and R 4 is a thiophosphoramidate:
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is cyclopropyl, R 3 is hydrogen, and R 4 is a monophosphate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is cyclopropyl, R 3 is methyl, and R 4 is a diphosphate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is cyclopropyl, R 3 is hydrogen, and R 4 is a triphosphate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is propyl, R 3 is hydrogen, R 4 is a stabilized phosphate prodrug;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is propyl, R 3 is hydrogen, and R 4 is a stabilized thiophosphate prodrug;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is propyl, R 3 is hydrogen, and R 4 is a phosphoramidate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is propyl, R 3 is hydrogen, and R 4 is a thiophosphoramidate:
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is ethyl, R 3 is hydrogen, R 4 is a stabilized phosphate prodrug;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is ethyl, R 3 is hydrogen, and R 4 is a stabilized thiophosphate prodrug;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is ethyl, R 3 is hydrogen, and R 4 is a phosphoramidate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is ethyl, R 3 is hydrogen, and R 4 is a thiophosphoramidate:
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is ethyl, R 3 is hydrogen, and R 4 is a diphosphate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is ethyl, R 3 is hydrogen, and R 4 is a triphosphate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is methyl, R 3 is hydrogen, R 4 is a stabilized phosphate prodrug;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is methyl, R 3 is hydrogen, and R 4 is a stabilized thiophosphate prodrug;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is methyl, R 3 is hydrogen, and R 4 is a phosphoramidate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is methyl, R 3 is hydrogen, and R 4 is a thiophosphoramidate:
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is methyl, R 3 is hydrogen, and R 4 is a monophosphate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is hydrogen, R 3 is hydrogen, R 4 is a stabilized phosphate prodrug;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is hydrogen, R 3 is hydrogen, and R 4 is a stabilized thiophosphate prodrug;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is hydrogen, R 3 is hydrogen, and R 4 is a phosphoramidate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is hydrogen, R 3 is hydrogen, and R 4 is a thiophosphoramidate:
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is hydrogen, R 3 is hydrogen, and R 4 is a monophosphate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is hydrogen, R 3 is hydrogen, and R 4 is a diphosphate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is hydrogen, R 3 is hydrogen, and R 4 is a triphosphate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is cyclopropyl, R 3 is hydrogen, R 4 is a stabilized phosphate prodrug;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is cyclopropyl, R 3 is hydrogen, and R 4 is a stabilized thiophosphate prodrug;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is cyclopropyl, R 3 is hydrogen, and R 4 is a phosphoramidate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is cyclopropyl, R 3 is hydrogen, and R 4 is a thiophosphoramidate:
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is cyclopropyl, R 3 is hydrogen, and R 4 is a monophosphate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is cyclopropyl, R 3 is methyl, and R 4 is a diphosphate;
  • Y is NR 1 R 2 , R 1 is methyl, R 2 is cyclopropyl, R 3 is hydrogen, and R 4 is a triphosphate.
  • the compound has an R 22 substituent.
  • the R 22 is F, amide or carbamate.
  • R 22 is chloro, bromo, cyano, azido, ethyl, n-propyl, iso-propyl, n-butyl, iso-butyl, sec-butyl, tert-butyl and n-pentyl, 1,1-dimethylpropyl, 2,2-dimtheylpropyl, 3- methylbutyl, 1-methylbutyl, 1-ethylpropyl, vinyl, allyl, 1-butynyl, 2-butynyl, acetylenyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, -(CH 2 )-cyclopropyl, -(CH 2 )-cyclobutyl, -(CH 2 )-cyclopentyl, -(CH 2 )-cyclohexyl, aziridine, oxirane, thiirane
  • an L-nucleoside is used in Formula I-VI.
  • Formula I R 12 variable is CH2F.
  • Formula I R 12 variable is CHF2.
  • the Formula I R 12 variable is CF 3 .
  • the use of an effective amount of a compound of Formula I or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof is provided.
  • Non-limiting examples of compounds of Formula I include:
  • RNA virus RNA virus
  • a host including a human in need thereof.
  • Non-limiting examples of Formula III include but are not limited to:
  • thiophosphoramidates of Formula III include, but are not limited to:
  • thiophosphoramidates of Formula III include, but are not limited to:
  • RNA virus RNA virus
  • a host including a human in need thereof.
  • stabilized phosphate prodrugs of Formula I are illustrated below:
  • RNA virus RNA virus
  • a host including a human in need thereof.
  • compounds of Formula II include:
  • Non-limiting examples of compounds of Formula V include: In one embodiment, the use of an effective amount of a compound of Formula VI or a pharmaceutically acceptable salt thereof, for the treatment of an infection of an RNA virus in a host, including a human in need thereof is provided.
  • Non-limiting examples of compounds of Formula VI include:
  • R 3 is H and R 4 is In some embodiments, R 3 is H and R 4 is In some embodiments, R 3 is H and R 4 is In some embodiments, R 3 is H and R 4 is In some embodiments, R 3 is H and R 4 is In some embodiments, R 3 is H and R 4 is In some embodiments, R 3 is H and R 4 is In some embodiments, R 3 is H and R 4 is In some embodiments, R 3 is H and R 4 is In some embodiments, R 1 is CH3, R 2 is H, R 3 is H and R 4 is
  • R 1 is CH3
  • R 2 is H
  • R 3 is H
  • R 4 is
  • R 1 is CH 2
  • R is H
  • R 3 is H
  • R 4 is .
  • R 1 is CH 3
  • R 2 is CH 3
  • R 3 is H
  • R 4 is
  • R 1 is CH 3
  • R 2 is CH 3
  • R 3 is H
  • R 4 is
  • R 1 is CH 3
  • R 2 is CH 3
  • R 3 is H
  • R 4 is
  • R 1 is cyclopropyl
  • R 2 is CH 3
  • R 3 is H
  • R 4 is
  • R 1 is cyclopropyl
  • R 2 is CH 3
  • R 3 is H
  • R 4 is
  • R 1 is cyclopropyl
  • R 2 is CH 3
  • R 3 is H
  • R 4 is
  • RNA virus RNA virus
  • a host including a human in need thereof.
  • Non-limiting examples of Formula III include but are not limited to:
  • alkyl shall mean within its context, a linear, or branch-chained fully saturated hydrocarbon radical or alkyl group which can be optionally substituted (for example, with halogen, including F).
  • an alkyl group can have 1, 2, 3, 4, 5, 6, 7 or 8 carbon atoms (i.e., C1 -C8 alkyl), 1, 2, 3, 4, 5 or 6 carbon atoms (i.e., C1-C6 alkyl) or 1 to 4 carbon atoms (i.e., C 1 -C 4 alkyl).
  • alkyl groups include, but are not limited to, methyl, ethyl, n- propyl, iso-propyl, n-butyl, isobutyl, sec-butyl, tert-butyl, pentyl, isopentyl, tert-pentyl, neopentyl, hexyl, 2-methylpentyl, 3-methylpentyl, 2,2-dimethylbutyl and 2,3-dimethylbutyl.
  • alkenyl refers to a non-aromatic hydrocarbon group which contains at least one double bond between adjacent carbon atoms and a similar structure to an alkyl group as otherwise described herein.
  • an alkenyl group can have 2 to 8 carbon atoms (i.e., C 2 -C 8 alkenyl), or 2 to 4 carbon atoms (i.e., C 2 -C 4 alkenyl).
  • the alkenyl group can be optionally substituted as described herein.
  • alkynyl refers to a non-aromatic hydrocarbon group containing at least one triple bond between adjacent carbon atoms and a similar structure to an alkyl group as otherwise described herein.
  • an alkynyl group can have 2 to 8 carbon atoms (i.e., C2-C8 alkyne,), or 2 to 4 carbon atoms (i.e., C 2 -C 4 alkynyl).
  • alkynyl groups include, but are not limited to, acetylenic or ethynyl and propargyl.
  • the alkynyl group can be optionally substituted as described herein.
  • acyl refers to the moiety–C(O)R in which the carbonyl moiety is bonded to R, for example, -C(O)alkyl.
  • R can be selected from alkoxy, alkyl, cycloalkyl, lower alkyl (i.e., C1-C4); alkoxyalkyl, including methoxymethyl; aralkyl- including benzyl, aryloxyalkyl- such as phenoxymethyl; aryl including phenyl optionally substituted with halogen, C 1 to C 4 alkyl or C 1 to C4 alkoxy.
  • the term "acyl” refers to a mono, di or triphosphate.
  • lower acyl refers to an acyl group in which the carbonyl moiety is lower alkyl (i.e., C1-C4).
  • alkoxy refers to the group–OR’ where–OR’ is -O-alkyl, -O-alkenyl, -O- alkynyl, -O-(C0-C2)(cycloalkyl), -O-(C0-C2)(heterocyclo), -O-(C0-C2)(aryl), or -O-(C0- C2)(heteroaryl), each of which can be optionally substituted.
  • amino refers to the group–NH 2 .
  • amino acid refers to a D- or L- natural or non- naturally occurring amino acid.
  • Representative amino acids include, but are not limited to, alanine, ⁇ -alanine, arginine, asparagine, aspartic acid, cysteine, cystine, glutamic acid, glutamine, glycine, phenylalanine, histidine, isoleucine, lysine, leucine, methionine, proline, serine, threonine, valine, tryptophan, or tyrosine, among others.
  • aryl or "aromatic”, in context, refers to a substituted (as otherwise described herein) or unsubstituted monovalent aromatic radical having a single ring (e.g., phenyl or benzyl) or condensed rings (e.g., naphthyl, anthracenyl, phenanthrenyl, etc.) and can be bound to the compound according to the present invention at any available stable position on the ring(s) or as otherwise indicated in the chemical structure presented.
  • the aryl group can be optionally substituted as described herein.
  • Cycloalkyl refers to a saturated (i.e., cycloalkyl) or partially unsaturated (e.g., cycloakenyl, cycloalkadienyl, etc.) ring having 3 to 7 carbon atoms as a monocycle.
  • Monocyclic carbocycles have 3 to 7 ring atoms, still more typically 5 or 6 ring atoms.
  • Non-limiting examples of cycloalkyl groups include cyclopropyl, cyclobutyl, cyclopentyl, l-cyclopent-1-enyl, l-cyclopent-2-enyl, l-cyclopent-3-enyl, cyclohexyl, l-cyclohex-1-enyl, l-cyclohex-2-enyl, a n d l-cyclo-hex-3-enyl.
  • halogen refers to chloro, bromo, fluoro or iodo.
  • a heteroaryl ring system is a saturated or unsaturated ring with one or more nitrogen, oxygen, or sulfur atoms in the ring (monocyclic) including but not limited to imidazole, furyl, pyrrole, furanyl, thiene, thiazole, pyridine, pyrimidine, purine, pyrazine, triazole, oxazole, or fused ring systems such as indole, quinoline, etc., among others, which may be optionally substituted as described above.
  • Heteroaryl groups include nitrogen-containing heteroaryl groups such as pyrrole, pyridine, pyridone, pyridazine, pyrimidine, pyrazine, pyrazole, imidazole, triazole, triazine, tetrazole, indole, isoindole, indolizine, purine, indazole, quinoline, isoquinoline, quinolizine, phthalazine, naphthyridine, quinoxaline, quinazoline, cinnoline, pteridine, imidazopyridine, imidazotriazine, pyrazino-pyridazine, acridine, phenanthridine, carbazole, carbazoline, perimidine, phenanthroline, phenacene, oxadiazole, benzimidazole, pyrrolopyridine, pyrrolopyrimidine and pyridopyrimidine; sulfur
  • heterocycle or “heterocyclo” refers to a cyclic group which contains at least one heteroatom, i.e., O, N, or S, and may be aromatic (heteroaryl) or non-aromatic.
  • non-aromatic heterocyclic groups for use in the present invention include, for example, pyrrolidinyl, piperidinyl, piperazinyl, N-methylpiperazinyl, imidazolinyl, pyrazolidinyl, imidazolidinyl, morpholinyl, tetrahydropyranyl, azetidinyl, oxetanyl, oxathiolanyl, pyridone, 2- pyrrolidone, ethylene urea, 1,3-dioxolane, 1,3-dioxane, 1,4-dioxane, phthalimide, and succinimide, among others, all of which may be optionally substituted.
  • nitro refers to the group–NO 2 .
  • pharmaceutically acceptable salt or prodrug
  • any pharmaceutically acceptable form such as an ester, phosphoramidate, thiophosphoramidate, phosphate ester, salt of an ester, or a related group
  • pharmaceutically acceptable form such as an ester, phosphoramidate, thiophosphoramidate, phosphate ester, salt of an ester, or a related group
  • Examples of pharmaceutically acceptable salts are organic acid addition salts formed with acids, which form a physiological acceptable anion, for example, tosylate, methanesulfonate, acetate, citrate, malonate, tartrate, succinate, benzoate, ascorbate, ⁇ - ketoglutarate, and ⁇ -glycerophosphate.
  • Suitable inorganic salts may also be formed, including sulfate, nitrate, bicarbonate, and carbonate salts.
  • Pharmaceutically acceptable salts may be obtained using standard procedures well known in the art, for example by reacting a sufficiently basic compound such as an amine with a suitable acid affording a physiologically acceptable anion.
  • Alkali metal for example, sodium, potassium, or lithium
  • alkaline earth metal for example calcium
  • “Pharmaceutically acceptable prodrug” refers to a compound that is metabolized, for example hydrolyzed or oxidized, in the host to form the compound of the present invention.
  • Typical examples of prodrugs include compounds that have biologically labile protecting groups on a functional moiety of the active compound.
  • Prodrugs include compounds that can be oxidized, reduced, aminated, deaminated, hydroxylated, dehydroxylated, hydrolyzed, dehydrolyzed, alkylated, dealkylated, acylated, deacylated, phosphorylated, dephosphorylated, thiophoshoramidated, dethiophoshoramidated, phoshoramidated or dephosphoramidated to produce the active compound.
  • the compounds of this invention possess antiviral activity against an RNA virus, or are metabolized to a compound that exhibits such activity.
  • the 2'-substituted- N 6 -substituted purine nucleoside can also be administered as a 5’-phosphoether lipid, a bisphosphoramidate, a 3’,5’-cyclic phosphoramidate, a 3’,5’-cyclic thiophosphoramidate, a DTE conjugate, a mixed phosphoramidate-SATE derivative or a“SATE” derivative.
  • phosphonic acid refers to the group–P(O)(OH) 2 .
  • the term purine or pyrimidine base includes, but is not limited to, adenine, N 6 -alkylpurines, N 6 -acylpurines (wherein acyl is -C(O)alkyl, -C(O)(aryl)C 0 -C 4 alkyl, or -C(O)(C 0 -C 4 alkyl)aryl), N 6 -benzylpurine, N 6 -halopurine, N 6 -vinylpurine, N 6 -acetylenic purine, N 6 -acyl purine, N 6 -hydroxyalkyl purine, N 6 -thioalkyl purine, N 2 -alkylpurines, N 2 -alkyl-6- thiopurines, thymine, cytosine, 5-fluorocytosine, 5-methylcytosine, 6-azapyrimidine, including 6-azacytosine, 2- and/or 4-mercaptopyrmidine, urac
  • Purine bases include, but are not limited to, guanine, adenine, hypoxanthine, 2,6-diaminopurine, and 6-chloropurine. Functional oxygen and nitrogen groups on the base can be protected as necessary or desired. Suitable protecting groups are well known to those skilled in the art, and include benzyl, trimethylsilyl, dimethylhexylsilyl, t-butyldimethylsilyl, t-butyldiphenylsilyl, trityl, alkyl groups, and acyl groups such as acetyl and propionyl; methanesulfonyl, and p-toluenesulfonyl. Alternatively, the purine or pyrimidine base can optionally be substituted such that it forms a viable prodrug, which can be cleaved in vivo. Examples of appropriate substituents include an acyl moiety.
  • substituted or “optionally substituted” indicates that the moiety can have at least one additional substituent including, but not limited to, halogen (F, Cl, Br, I), OH, phenyl, benzyl, N 3 , CN, acyl, alkyl, including methyl; alkenyl, alkynyl, alkoxy, haloalkyl; including CHF2, CH2F and CF3; etc.
  • the term "substituted” or “optionally substituted” indicates that the moiety can have at least one additional substituent including, but not limited to, azido, cyano, halogen (fluoro, chloro, bromo, or iodo), alkyl, alkenyl, alkynyl, cycloalkyl, heterocycle, aryl, heteroaryl, haloalkyl, hydroxyl, alkoxy, amino, -NH(C1-C6 unsubstituted alkyl), -NH(C1-C6 substituted alkyl), -NH-(C0-C2alkyl)(C3-C8cycloalkyl), -NH-(C0-C2alkyl)(C3- C 8 heterocycle),-NH-(C 0 -C 2 alkyl)(aryl), -N(C 1 -C 6 unsubstituted alkyl) 2 , -N(C 1 -C 6 unsubstitute
  • sulfonate esters represented by the formula, R 14 S(O) 2 OR 15 , comprise R 14 wherein R 14 is alkyl, haloalkyl, aralkyl or aryl.
  • R 15 is alkyl, aryl or aralkyl.
  • sulfonic acid refers to the group–SO 2 OH.
  • nitrogen-protecting group refers to a moiety that is covalently attached to nitrogen and which can be removed, and typically replaced with hydrogen, when appropriate.
  • a nitrogen-protecting group may be a group that is removed in vivo after administration to a host, in vitro by a cell, or it may be removed during a manufacturing process.
  • Suitable nitrogen-protecting groups useful in the present invention are described by Greene and Wuts in Protective Groups in Organic Synthesis (1991) New York, John Wiley and Sons, Inc.
  • oxygen-protecting group refers to a moiety that is covalently attached to oxygen and which can be removed, and typically replaced with hydrogen, when appropriate.
  • an oxygen-protecting group may be a group that is removed in vivo after administration to a host, in vitro by a cell, or it may be removed during a manufacturing process.
  • Suitable oxygen-protecting groups useful in the present invention are described by Greene and Wuts in Protective Groups in Organic Synthesis (1991) New York, John Wiley and Sons, Inc.
  • Phosphate refers to the group–OP(O)(OH)2.
  • Phosphate ester refers to mono, di, and tri phosphates unless otherwise indicated.
  • phosphoamidate is a moiety that has a phosphorus bound to three oxygen groups and an amine (which may optionally be substituted).
  • Suitable phosphoramidates useful in the present invention are described by Madela, Karolina and McGuigan in 2012,“Progress in the development of anti-hepatitis C virus nucleoside and nucleotide prodrugs”, Future Medicinal Chemistry 4(5), pages 625-650 10:1021/jm300074y and Anthony, McGuigan and Balzarini in 2004, “Aryloxy Phosphoramidate Triesters as Pro-Tides”, Mini Reviews in Medicinal Chemistry 4(4), pages 371- 381.
  • Phosphoramidate groups for use in the present invention include those of the structures:
  • phosphoramidates for use in the present invention include those of the structure:
  • R P1 is an optionally substituted linear, branched, or cyclic alkyl group, or an optionally substituted aryl, heteroaryl or heterocyclic group or a linked combination thereof;
  • R P2 is a -NR N1 R N2 group or a B’ group
  • R N1 and R N2 are each independently H, C 1-8 alkyl, (C 3 -C 7 cycloalkyl)C 0 -C 4 alkyl-, (aryl)C 0 - C 4 alkyl-, (C 3 -C 6 heterocyclo)C 0 -C 4 alkyl-, or (heteroaryl)C 0 -C 4 alky-; which may be optionally substituted; or
  • R N1 and R N2 along with the nitrogen atom to which that are attached, join to form a 3 to 7 membered heterocyclic ring;
  • B’ is a group; wherein:
  • R 16 is hydrogen, (C1-C8)alkyl, (C2-C8)alkenyl, (C2-C8)alkynyl, (C3-C8cycloalkyl)C0- C 4 alkyl-, (aryl)C 0 -C 4 alkyl-, (C 3 -C 6 heterocyclo)C 0 -C 4 alkyl-, (heteroaryl)C 0 -C 4 alky-, or the sidechain of an amino acid, for example a sidechain of an amino acid (as otherwise described herein) often selected from the group consisting of alanine, ⁇ -alanine, arginine, asparagine, aspartic acid, cysteine, cystine, glutamic acid, glutamine, glycine, phenylalanine, histidine, isoleucine, lysine, leucine, methionine, proline, serine, threonine, valine, tryptophan, or tyrosine (
  • R 17 is hydrogen, (C 1 -C 8 )alkyl, (C 2 -C 8 )alkenyl, (C 2 -C 8 )alkynyl, (C 3 -C 8 cycloalkyl)C 0 - C 4 alkyl-, (aryl)C 0 -C 4 alkyl-, (C 3 -C 6 heterocyclo)C 0 -C 4 alkyl-, (heteroaryl)C 0 -C 4 alky-, or the sidechain of an amino acid, for example a sidechain of an amino acid (as otherwise described herein) often selected from the group consisting of alanine, ⁇ -alanine, arginine, asparagine, aspartic acid, cysteine, cystine, glutamic acid, glutamine, glycine, phenylalanine, histidine, isoleucine, lysine, leucine, methionine, proline, serine, threonine
  • R 18 is hydrogen or C 1 -C 3 alkyl
  • R 16 and R 17 can form a (C 3 -C 7 )cycloalkyl or (C 3 -C 7 )heterocyclic group; or
  • R 18 and R 16 or R 17 can form (C3-C6)heterocyclic group
  • R 19 is hydrogen, (C 1 -C 6 )alkyl, (C 3 -C 6 )alkenyl, (C 3 -C 6 )alkynyl, (C 3 -C 8 cycloalkyl)C 0 - C 4 alkyl-, (aryl)C 0 -C 4 alkyl-, (C 3 -C 6 heterocyclo)C 0 -C 4 alkyl-, (heteroaryl)C 0 -C 4 alky-; or
  • B’ is a group
  • R 20 is hydrogen, (C1-C3)alkyl, (C3-C8cycloalkyl)C0-C4alkyl-, (aryl)C0-C4alkyl-, (C3- C6heterocyclo)C0-C4alkyl-, or (heteroaryl)C0-C4alky-;
  • R 21 is hydrogen, (C 1 -C 3 )alkyl, (C 3 -C 8 cycloalkyl)C 0 -C 4 alkyl-, (aryl)C 0 -C 4 alkyl-, (C 3 - C6heterocyclo)C0-C4alkyl-, or (heteroaryl)C0-C4alky-; and
  • R 18 and R 19 are as defined above.
  • Typical R P1 groups include optionally substituted phenyl, naphthyl, and monocyclic heteroaryl groups, especially those groups (particularly lipophilic groups) which enhance bioavailability of the compounds in the cells of the patient and which exhibit reduced toxicity, enhanced therapeutic index and enhanced pharmacokinetics (the compounds are metabolized and excreted more slowly).
  • phosphoramidate is used throughout the specification to describe a group that is found at the 5’ or 3’ position of the furanose ring of the nucleoside compound and forms a prodrug form of the nucleoside compound. In one embodiment, phosphoramidates can be found at both the 5’ and 3’ position of the furanose ring of the nucleoside compound and form a prodrug form of the nucleoside compound.
  • the phosphoramidate found at the 5’ position of the furanose ring of the nucleoside can form a cyclic phosphoramidate compound by forming a bond with the 3’-hydroxyl substituent at the 3’ position of the furanose ring of the nucleoside compound and form a prodrug form of the nucleoside compound.
  • thiophosphoamidate is a moiety that has a phosphorus bound to sulfur, two oxygen groups and an amine (which may optionally be substituted).
  • Thiophosphoramidates useful in the present invention are described in US Patent No.8,772,474 and WO 2012/040124.
  • Thiophosphoramidate groups for use in the present invention include those of the structures:
  • thiophosphoramidates include those of the structure:
  • R P1 is an optionally substituted linear, branched, or cyclic alkyl group, or an optionally substituted aryl, heteroaryl or heterocyclic group or a linked combination thereof;
  • R P2 is a -NR N1 R N2 group or a B’ group
  • R N1 and R N2 are each independently H, C1-C8 alkyl, (C3-C7cycloalkyl)C0-C4alkyl-, (aryl)C0-C4alkyl-, (C3-C6heterocyclo)C0-C4alkyl-, or (heteroaryl)C0-C4alky-; or
  • R N1 and R N2 along with the nitrogen atom to which that are attached, join to form a 3 to 7 membered heteroc scrap rin ;
  • B’ is a group; wherein:
  • R 16 is hydrogen, (C1-C8)alkyl, (C2-C8)alkenyl, (C2-C8)alkynyl, (C3-C8cycloalkyl)C0- C 4 alkyl-, (aryl)C 0 -C 4 alkyl-, (C 3 -C 6 heterocyclo)C 0 -C 4 alkyl-, (heteroaryl)C 0 -C 4 alky-, or the sidechain of an amino acid, for example a sidechain of an amino acid (as otherwise described herein) often selected from the group consisting of alanine, ⁇ -alanine, arginine, asparagine, aspartic acid, cysteine, cystine, glutamic acid, glutamine, glycine, phenylalanine, histidine, isoleucine, lysine, leucine, methionine, proline, serine, threonine, valine, tryptophan, or tyrosine (
  • R 17 is hydrogen, (C 1 -C 8 )alkyl, (C 2 -C 8 )alkenyl, (C 2 -C 8 )alkynyl, (C 3 -C 8 cycloalkyl)C 0 - C 4 alkyl-, (aryl)C 0 -C 4 alkyl-, (C 3 -C 6 heterocyclo)C 0 -C 4 alkyl-, (heteroaryl)C 0 -C 4 alky-, or the sidechain of an amino acid, for example a sidechain of an amino acid (as otherwise described herein) often selected from the group consisting of alanine, ⁇ -alanine, arginine, asparagine, aspartic acid, cysteine, cystine, glutamic acid, glutamine, glycine, phenylalanine, histidine, isoleucine, lysine, leucine, methionine, proline, serine, threonine
  • R 18 is hydrogen or C 1 -C 3 alkyl
  • R 16 and R 17 can form a (C 3 -C 7 )cycloalkyl or (C 3 -C 7 )heterocyclic group; or
  • R 18 and R 16 or R 17 can form (C3-C6) heterocyclic group
  • R 19 is hydrogen, (C 1 -C 6 )alkyl, (C 3 -C 6 )alkenyl, (C 3 -C 6 )alkynyl, (C 3 -C 8 cycloalkyl)C 0 - C 4 alkyl-, (aryl)C 0 -C 4 alkyl-, (C 3 -C 6 heterocyclo)C 0 -C 4 alkyl-, (heteroaryl)C 0 -C 4 alky-; or
  • B’ is a group
  • R 18 , R 19 , R 20 and R 21 are as defined above.
  • Typical R P1 groups include optionally substituted phenyl, naphthyl, and monocyclic heteroaryl groups, especially those groups (particularly lipophilic groups) which enhance bioavailability of the compounds into the cells of the patient and which exhibit reduced toxicity, enhanced therapeutic index and enhanced pharmacokinetics (the compounds are metabolized and excreted more slowly).
  • the thiophosphoramidate can be at the 5’ or 3’ position of the furanose ring of the nucleoside compound to form a prodrug form of the nucleoside compound. In one embodiment, thiophosphoramidates can be found at both the 5’ and 3’ position of the furanose ring of the nucleoside compound and form a prodrug form of the nucleoside compound.
  • the thiophosphoramidate found at the 5’ position of the furanose ring of the nucleoside can form a cyclic thiophosphoramidate compound by forming a bond with the 3’- hydroxyl substituent at the 3’ position of the furanose ring of the nucleoside compound and form a prodrug form of the nucleoside compound.
  • D-configuration refers to the principle configuration which mimics the natural configuration of sugar moieties as opposed to the unnatural occurring nucleosides or "L” configuration.
  • ⁇ or “ ⁇ anomer” is used with reference to nucleoside analogs in which the nucleoside base is configured (disposed) above the plane of the furanose moiety in the nucleoside analog.
  • coadminister and “coadministration” or combination therapy are used to describe the administration of at least one of the 2'-substituted-N 6 -substituted purine nucleotide compounds according to the present invention in combination with at least one other active agent, for example where appropriate at least one additional anti-RNA virus agent, including other 2'-substituted-N 6 -substituted purine nucleotide agents which are disclosed herein.
  • the timing of the coadministration is best determined by the medical specialist treating the patient. It is sometimes preferred that the agents be administered at the same time. Alternatively, the drugs selected for combination therapy may be administered at different times to the patient. Of course, when more than one viral or other infection or other condition is present, the present compounds may be combined with other agents to treat that other infection or condition as required.
  • RNA virus refers to a unicellular or multicellular organism in which an RNA virus can replicate, including cell lines and animals, and typically a human.
  • the term host specifically refers to infected cells, cells transfected with all or part of an RNA virus genome, and animals, in particular, primates (including chimpanzees) and humans. In most animal applications of the present invention, the host is a human patient.
  • Veterinary applications in certain indications, however, are clearly anticipated by the present invention (such as chimpanzees).
  • the host can be for example, bovine, equine, avian, canine, feline, etc. Isotopic Substitution
  • the present invention includes the use of compounds with desired isotopic substitutions of atoms, at amounts above the natural abundance of the isotope, i.e., enriched.
  • Isotopes are atoms having the same atomic number but different mass numbers, i.e., the same number of protons but a different number of neutrons.
  • isotopes of hydrogen for example, deuterium ( 2 H) and tritium ( 3 H) may be used anywhere in described structures.
  • isotopes of carbon e.g., 13 C and 14 C, may be used.
  • a typical isotopic substitution is deuterium for hydrogen at one or more locations on the molecule to improve the performance of the drug.
  • the deuterium can be bound in a location of bond breakage during metabolism (an ⁇ -deuterium kinetic isotope effect) or next to or near the site of bond breakage (a ⁇ -deuterium kinetic isotope effect).
  • Achillion Pharmaceuticals, Inc. (WO/2014/169278 and WO/2014/169280) describes deuteration of nucleotides to improve their pharmacokinetics or pharmacodynamics, including at the 5-position of the molecule.
  • substitution with isotopes such as deuterium can afford certain therapeutic advantages resulting from greater metabolic stability, such as, for example, increased in vivo half-life or reduced dosage requirements.
  • Substitution of deuterium for hydrogen at a site of metabolic break down can reduce the rate of or eliminate the metabolism at that bond.
  • the hydrogen atom can be any isotope of hydrogen, including protium ( 1 H), deuterium ( 2 H) and tritium ( 3 H).
  • isotopically-labeled refers to an analog that is a "deuterated analog", a " 13 C-labeled analog,” or a “deuterated/ 13 C-labeled analog.”
  • deuterated analog means a compound described herein, whereby an H-isotope, i.e., hydrogen/protium ( 1 H), is substituted by an H-isotope, i.e., deuterium ( 2 H).
  • Deuterium substitution can be partial or complete. Partial deuterium substitution means that at least one hydrogen is substituted by at least one deuterium.
  • the isotope is 90, 95, 96, 97, 98 or 99% or more enriched in an isotope at any location of interest.
  • it is deuterium that is 90, 95, 96, 97, 98 or 99% enriched at a desired location. Unless indicated to the contrary, the deuteration is at least 80% at the selected location. Deuteration of the nucleoside can occur at any replaceable hydrogen that provides the desired results. III. Methods of Treatment or Prophylaxis
  • Treatment refers to the administration of an active compound to a host who is infected with an RNA virus, for example, a human.
  • prophylactic or preventative when used refers to the administration of an active compound to prevent or reduce the likelihood of an occurrence of the viral disorder.
  • the present invention includes both treatment and prophylactic or preventative therapies.
  • the active compound is administered to a host who has been exposed to and thus at risk of infection by an RNA virus infection.
  • the invention is directed to a method of treatment or prophylaxis of an RNA virus, including drug resistant and multidrug resistant forms of RNA virus and related disease states, conditions, or complications of an RNA virus infection, as well as other conditions that are secondary to an RNA virus infection, such as weakness, loss of appetite, weight loss, breast enlargement (especially in men), rash (especially on the palms), difficulty with clotting of blood, spider-like blood vessels on the skin, confusion, coma (encephalopathy), buildup of fluid in the abdominal cavity (ascites), esophageal varices, portal hypertension, kidney failure, enlarged spleen, decrease in blood cells, anemia, thrombocytopenia, jaundice, and hepatocellular cancer, among others.
  • the method comprises administering to a host in need thereof an effective amount of at least one 2'-substituted-N 6 -substituted purine nucleotide as described herein, optionally in combination with at least one additional bioactive agent, for example, an additional anti-RNA virus agent, further in combination with a pharmaceutically acceptable carrier additive and/or excipient.
  • additional bioactive agent for example, an additional anti-RNA virus agent
  • the present invention is a method for prevention or prophylaxis of an RNA virus infection or a disease state or related or follow-on disease state, condition or complication of an RNA virus infection, including hepatotoxicities, weakness, loss of appetite, weight loss, breast enlargement (especially in men), rash (especially on the palms), difficulty with clotting of blood, spider-like blood vessels on the skin, confusion, coma (encephalopathy), buildup of fluid in the abdominal cavity (ascites), esophageal varices, portal hypertension, kidney failure, enlarged spleen, decrease in blood cells, anemia, thrombocytopenia, jaundice, and hepatocellular (liver) cancer, among others, said method comprising administering to a patient at risk with an effective amount of at least one compound according to the present invention as described above in combination with a pharmaceutically acceptable carrier, additive, or excipient, optionally in combination with another anti-RNA virus agent.
  • the 5’-stabilized 2'-substituted-N 6 -substituted purine nucleotide can be administered if desired as any salt or prodrug that upon administration to the recipient is capable of providing directly or indirectly the parent compound, or that exhibits activity itself.
  • Nonlimiting examples are the pharmaceutically acceptable salts and a compound, which has been modified at a function group, such as a hydroxyl or amine function, to modify the biological activity, pharmacokinetics, half-life, controlled delivery, lipophilicity, absorption kinetics, ease of phosphorylation to the active 5’-triphosphate or efficiency of delivery using a desired route of administration of the compound.
  • Methods to modify the properties of an active compound to achieve target properties are known to those of skill in the art or can easily be assessed by standard methods, for example, acylation, phosphorylation, thiophosphoramidation, phosphoramidation, phosphonation, alkylation, or pegylation.
  • an active compound is administered to a host that is infected with a double stranded RNA virus.
  • an active compound is administered to a host that is infected with a positive-stranded RNA virus.
  • an active compound is administered to a host that is infected with a negative-stranded RNA virus.
  • an active compound is administered to a host that is infected with a double stranded RNA virus from the family Amalgaviridae. In one embodiment, an active compound is administered to a host that is infected with a double stranded RNA virus from the family Birnaviridae. In one embodiment, an active compound is administered to a host that is infected with a double stranded RNA virus from the family Chrysoviridae. In one embodiment, an active compound is administered to a host that is infected with a double stranded RNA virus from the family Cystoviridae.
  • an active compound is administered to a host that is infected with a double stranded RNA virus from the family Endornaviridae. In one embodiment, an active compound is administered to a host that is infected with a double stranded RNA virus from the family Hypoviridae. In one embodiment, an active compound is administered to a host that is infected with a double stranded RNA virus from the family Megabirnaviridae. In one embodiment, an active compound is administered to a host that is infected with a double stranded RNA virus from the family Partitiviridae.
  • an active compound is administered to a host that is infected with a double stranded RNA virus from the family Picobirnaviridae. In one embodiment, an active compound is administered to a host that is infected with a double stranded RNA virus from the family Quadriviridae. In one embodiment, an active compound is administered to a host that is infected with a double stranded RNA virus from the family Reoviridae. In one embodiment, an active compound is administered to a host that is infected with a double stranded RNA virus from the family Totiviridae.
  • an active compound is administered to a host that is infected with a positive-sense RNA virus from the order Nidovirales. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the order Picornavirales. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the order Tymovirales. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Arteviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Coronaviridae.
  • an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Mesoniviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Roniviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Dicistroviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Ifaviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Marnaviridae.
  • an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Picornaviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Secoviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Alphaflexiviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Betaflexiviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Gammaflexiviridae.
  • an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Tymoviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Alphatetraviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Alvernaviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Astroviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Barnaviridae.
  • an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Benyviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Bromoviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Caliciviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Carmotetraviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Closteroviridae.
  • an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Fusariviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Hepeviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Leviviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Luteoviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Narnaviridae.
  • an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Nodaviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Permutotetraviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Potyviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Togaviridae.
  • an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Tombusviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Virgaviridae. In one embodiment, an active compound is administered to a host that is infected with a positive-sense RNA virus from the family Flaviviridae genuses Flavivirus and Pestivirus.
  • the Flavivirus infection is Dengue fever. In a further embodiment, the Dengue fever is Dengue virus type 1, type 2, type 3, or type 4. In one embodiment, the Flavivirus infection is West Nile fever. In one embodiment, the Flavivirus infection is Yellow fever. In one embodiment, the Flavivirus infection is from the Zika virus. In one embodiment, the Pestivirus infection is BVDV.
  • an active compound is administered to a host that is infected with a negative-sense ssRNA virus from the order Mononegavirales. In one embodiment, an active compound is administered to a host that is infected with a negative-sense ssRNA virus from the family Bornaviridae. In one embodiment, an active compound is administered to a host that is infected with a negative-sense ssRNA virus from the family Filoviridae. In one embodiment, an active compound is administered to a host that is infected with a negative-sense ssRNA virus from the family Paramyxoviridae.
  • an active compound is administered to a host that is infected with a negative-sense ssRNA virus from the family Rhabdoviridae. In one embodiment, an active compound is administered to a host that is infected with a negative-sense ssRNA virus from the family Nyamiviridae. In one embodiment, an active compound is administered to a host that is infected with a negative-sense ssRNA virus from the family Arenaviridae. In one embodiment, an active compound is administered to a host that is infected with a negative-sense ssRNA virus from the family Bunyaviridae.
  • an active compound is administered to a host that is infected with a negative-sense ssRNA virus from the family Ophioviridae. In one embodiment, an active compound is administered to a host that is infected with a negative-sense ssRNA virus from the family Orthomyxoviridae.
  • an active compound is administered to a host that is infected with Borna disease virus. In one embodiment, an active compound is administered to a host that is infected with Ebola virus. In one embodiment, an active compound is administered to a host that is infected with Marburg virus. In one embodiment, an active compound is administered to a host that is infected with Measles virus. In one embodiment, an active compound is administered to a host that is infected with Mumps virus. In one embodiment, an active compound is administered to a host that is infected with Nipah virus. In one embodiment, an active compound is administered to a host that is infected with Hendra virus.
  • an active compound is administered to a host that is infected with Newcastle disease virus (NDV). In one embodiment, an active compound is administered to a host that is infected with Rhabdoviridae. In one embodiment, an active compound is administered to a host that is infected with Rabies virus. In one embodiment, an active compound is administered to a host that is infected with Nyamiviridae. In one embodiment, an active compound is administered to a host that is infected with Nyavirus. In one embodiment, an active compound is administered to a host that is infected with Arenaviridae. In one embodiment, an active compound is administered to a host that is infected with Lassa virus.
  • NDV Newcastle disease virus
  • an active compound is administered to a host that is infected with Rhabdoviridae. In one embodiment, an active compound is administered to a host that is infected with Rabies virus. In one embodiment, an active compound is administered to a host that is infected with Nyamiviridae. In one embodiment
  • an active compound is administered to a host that is infected with Bunyaviridae. In one embodiment, an active compound is administered to a host that is infected with Hantavirus. In one embodiment, an active compound is administered to a host that is infected with Crimean-Congo hemorrhagic fever. In one embodiment, an active compound is administered to a host that is infected with Ophioviridae. In one embodiment, an active compound is administered to a host that is infected with Orthomyxoviridae. In one embodiment, an active compound is administered to a host that is infected with influenza virus. In one embodiment, an active compound is administered to a host that is infected with subtype 5 Coxsackie B virus. IV. Pharmaceutical Compositions
  • compositions according to the present invention comprise an anti-RNA virus effective amount of at least one of the 5’-stabilized 2'- substituted-N 6 -substituted purine nucleotide compounds described herein, optionally in combination with a pharmaceutically acceptable carrier, additive, or excipient, further optionally in combination or alternation with at least one other active compound.
  • the treated virus is other than a hepacivirus or other than HCV.
  • compositions according to the present invention comprise an anti-RNA virus effective amount of at least one of the active 2'- substituted-N 6 -substituted purine nucleotide compounds described herein, optionally in combination with a pharmaceutically acceptable carrier, additive, or excipient, further optionally in combination with at least one other antiviral, such as an anti-RNA virus agent.
  • the invention includes pharmaceutical compositions that include an effective amount to treat an RNA virus infection of one of the 2'-substituted-N 6 -substituted purine nucleotide compounds of the present invention or its salt or prodrug, in a pharmaceutically acceptable carrier or excipient.
  • the invention includes pharmaceutical compositions that include an effective amount to prevent an RNA virus infection of one of the 2'- substituted-N 6 -substituted purine nucleotide compounds of the present invention or its salt or prodrug, in a pharmaceutically acceptable carrier or excipient.
  • a therapeutically effective amount will vary with the infection or condition to be treated, its severity, the treatment regimen to be employed, the pharmacokinetics of the agent used, as well as the patient or subject (animal or human) to be treated, and such therapeutic amount can be determined by the attending physician or specialist.
  • the patient is a human.
  • the 5’-stabilized 2'-substituted-N 6 -substituted purine nucleotide compounds according to the present invention can be formulated in an admixture with a pharmaceutically acceptable carrier.
  • a pharmaceutically acceptable carrier In general, it is typical to administer the pharmaceutical composition in orally administrable form, but certain formulations may be administered via a parenteral, intravenous, intramuscular, topical, transdermal, buccal, subcutaneous, suppository, or other route, including intranasal spray. Intravenous and intramuscular formulations are often administered in sterile saline.
  • the prodrug form of the compounds especially including acylated (acetylated or other), and ether (alkyl and related) derivatives, phosphate esters, thiophosphoramidates, phosphoramidates, and various salt forms of the present compounds, are typical.
  • acylated (acetylated or other) and ether (alkyl and related) derivatives, phosphate esters, thiophosphoramidates, phosphoramidates, and various salt forms of the present compounds.
  • ether alkyl and related derivatives
  • phosphate esters thiophosphoramidates
  • phosphoramidates phosphoramidates
  • various salt forms of the present compounds are typical.
  • One of ordinary skill in the art will recognize how to readily modify the present compounds to prodrug forms to facilitate delivery of active compounds to a targeted site within the host organism or patient.
  • the routineer also will take advantage of favorable pharmacokinetic parameters of the prodrug forms, where applicable, in delivering the present compounds
  • the amount of compound included within therapeutically active formulations according to the present invention is an effective amount for treating the RNA virus infection, reducing the likelihood of an RNA virus infection or the inhibition, reduction, and/or abolition of an RNA virus or its secondary effects, including disease states, conditions, and/or complications which occur secondary to an RNA virus infection.
  • a therapeutically effective amount of the present compound in pharmaceutical dosage form usually ranges from about 0.001 mg/kg to about 100 mg/kg per day or more, more often, slightly less than about 0.1 mg/kg to more than about 25 mg/kg per day of the patient or considerably more, depending upon the compound used, the condition or infection treated and the route of administration.
  • the active nucleoside compound according to the present invention is often administered in amounts ranging from about 0.1 mg/kg to about 15 mg/kg per day of the patient, depending upon the pharmacokinetics of the agent in the patient.
  • This dosage range generally produces effective blood level concentrations of active compound which may range from about 0.001 to about 100, about 0.05 to about 100 micrograms/cc of blood in the patient.
  • compositions will be administered in oral dosage form in amounts ranging from about 250 micrograms up to about 500 mg or more at least once a day, for example, at least 25, 50, 100, 150, 250 or 500 milligrams, up to four times a day.
  • present compounds are often administered orally, but may be administered parenterally, topically, or in suppository form, as well as intranasally, as a nasal spray or as otherwise described herein.
  • the amount of the compound according to the present invention to be administered ranges from about 0.01 mg/kg of the patient to about 500 mg/kg. or more of the patient or considerably more, depending upon the second agent to be co-administered and its potency against the virus, the condition of the patient and severity of the disease or infection to be treated and the route of administration.
  • the other anti-RNA virus agent may for example be administered in amounts ranging from about 0.01 mg/kg to about 500 mg/kg.
  • these compounds may be often administered in an amount ranging from about 0.5 mg/kg to about 50 mg/kg or more (usually up to about 100 mg/kg), generally depending upon the pharmacokinetics of the two agents in the patient. These dosage ranges generally produce effective blood level concentrations of active compound in the patient.
  • a prophylactically or preventive effective amount of the compositions according to the present invention falls within the same concentration range as set forth above for therapeutically effective amount and is usually the same as a therapeutically effective amount.
  • Administration of the active compound may range from continuous intravenous drip to several oral or intranasal administrations per day (for example, Q.I.D.) or transdermal administration and may include oral, topical, parenteral, intramuscular, intravenous, sub-cutaneous, transdermal (which may include a penetration enhancement agent), buccal, and suppository administration, among other routes of administration.
  • Enteric coated oral tablets may also be used to enhance bioavailability of the compounds for an oral route of administration.
  • the most effective dosage form will depend upon the bioavailability/pharmacokinetics of the particular agent chosen as well as the severity of disease in the patient. Oral dosage forms are particularly typical, because of ease of administration and prospective favorable patient compliance.
  • a therapeutically effective amount of one or more of the compounds according to the present invention is often intimately admixed with a pharmaceutically acceptable carrier according to conventional pharmaceutical compounding techniques to produce a dose.
  • a carrier may take a wide variety of forms depending on the form of preparation desired for administration, e.g., oral or parenteral.
  • any of the usual pharmaceutical media may be used.
  • suitable carriers and additives including, but not limited to, water, glycols, oils, alcohols, flavoring agents, preservatives, coloring agents may be used.
  • suitable carriers and additives including, but not limited to, starches, sugar carriers, such as dextrose, manifold, lactose, and related carriers, diluents, granulating agents, lubricants, binders, disintegrating agents may be used.
  • the tablets or capsules may be enteric-coated or sustained release by standard techniques. The use of these dosage forms may significantly enhance the bioavailability of the compounds in the patient.
  • the carrier will usually comprise sterile water or aqueous sodium chloride solution, though other ingredients, including those which aid dispersion, also may be included.
  • sterile water is to be used and maintained as sterile, the compositions and carriers must also be sterilized.
  • injectable suspensions may also be prepared, in which case appropriate liquid carriers, suspending agents, and the like may be employed.
  • Liposomal suspensions may also be prepared by conventional methods to produce pharmaceutically acceptable carriers. This may be appropriate for the delivery of free nucleosides, acyl/alkyl nucleosides or phosphate ester pro- drug forms of the nucleoside compounds according to the present invention.
  • the compounds and compositions are used to treat, prevent or delay an RNA virus infection or a secondary disease state, condition or complication of an RNA virus infection.
  • RNA virus infection can be prolonged, augmented, or restored by administering the compound in combination or alternation with another, and perhaps even two or three other, antiviral compounds that induce a different mutation or act through a different pathway, from that of the principle drug.
  • the pharmacokinetics, bio distribution, half-life, or other parameter of the drug can be altered by such combination therapy (which may include alternation therapy if considered concerted). Since the disclosed 2'-substituted-N 6 -substituted purine nucleotides are polymerase inhibitors, it may be useful to administer the compound to a host in combination with, for example a:
  • Protease inhibitor such as an NS3/4A protease inhibitor
  • Interferon alfa-2a which may be pegylated or otherwise modified, and/or ribavirin;
  • iRNA including microRNA and SiRNA
  • Viral antigen or partial antigen that induces a host antibody response Drugs that are currently approved for influenza are Amantadine, Rimantadine, Oseltamivir and Rapivab ® . Any of these drugs can be used in combination or alternation with an active compound provided herein to treat a viral infection susceptible to such. Ribavirin is used to treat measles, Influenza A, influenza B, parainfluenza, severe RSV bronchiolitis and SARS as well as other viral infections, and therefore is particularly useful in combination with the present compound for treatment of the host infected with a single stranded RNA virus.
  • the Yellow Fever Vaccine (YF-Vax) is manufactured by Sanofi Pasteur, Inc. and is recommended for those aged 9 and older who are traveling to areas of high risk, including South American and Africa.
  • a compound of Formula I, Formula II, Formula III, Formula IV, Formula V, or Formula VI is administered to a host in combination with the YF- Vax. No treatment exists for Yellow Fever, but an emphasis is placed on easing fever, muscle pain, and dehydration. Due to the risk of internal bleeding, aspirin and nonsteroidal anti- inflammatory drugs are not recommended.
  • PE Petroleum ether
  • Ph3P Triphenylphosphine
  • THF Tetrahydrofuran (THF), anhydrous
  • TMSOTf Trimethylsilyl trifluoromethanesulfonate
  • TIPDSiCl2 1,3-Dichloro-1,1,3,3-tetraisopropyldisiloxane
  • any of the active compounds described herein have a chiral phosphorus moiety.
  • Any of the active compounds described herein can be provided as an isolated phosphorus enantiomeric form, for example, at least 80%, 90%, 95%, 96%, 97% or 98% of the R or S enantiomer, using methods known to those of skill in the art.
  • there are a number of publications that describe how to obtain such compounds including, but not limited to, column chromatography, for example, as described in U.S. Patent Nos. 8,859,756; 8,642,756 and 8,333,309 to Ross, et al.
  • Example 1 Modification of the 2-Amino Moiety in the Active Compounds
  • the base is potassium tert-butoxide.
  • the mixture of organic solvents comprises tert-butanol and acetonitrile.
  • the compound, (2R,3R,4R,5R)-5-(2,6-dichloro-9H-purin-9-yl)-2-(benzoyloxymethyl)-4-fluoro-4- methyltetrahydrofuran-3-yl benzoate is treated with an amine, a base and an organic solvent at ambient temperature to generate 2-chloro-N 6 -substituted purines.
  • the amine is methylamine.
  • the base is triethylamine.
  • the organic solvent is ethanol.
  • 2-Chloro-N 6 -substituted purines can then be treated with an amine, and an organic solvent in a sealed tube at an elevated temperature of about 100 o C to generate N 2 ,N 6 -disubstituted purine nucleosides of the present invention.
  • the amine is methylamine.
  • the organic solvent is ethanol.
  • N 2 ,N 6 -Disubstituted purine nucleosides of the present invention can be treated with a base, isopropyl ((R,S)- (pentafluorophenoxy)-phenoxy-phosphoryl)-L-alaninate and an organic solvent at a reduced temperature to generate compounds of Formula I-VI.
  • the base is tert-butyl magnesium chloride.
  • the organic solvent is tetrahydrofuran.
  • PPAL-RS (280 g) was triturated in 300 mL of heptane/EtOAc (20:1) at room temperature for 5 min. The white suspension was filtered and the solid was rinsed with a mixture of heptane/EtOAc (20:1). The filtrate was cooled to 8 °C and the solid was collected by filtration. Crude PPAL-R (10 g) was obtained with 95% chiral purity. The crude product was purified following the above step. PPAL-R (5 g) was obtained in NLT 98% chiral purity.
  • TIPDSiCl2 (110 mL, 1.05 eq.) dropwise at -5 ⁇ 5 o C under a N2 atmosphere. After stirring at -5 ⁇ 5 oC for 2 h, TLC showed that the starting material was consumed. DCM (600 mL) was added and TMSCl (85 mL, 2 eq.) was added dropwise at 0-5 o C. After stirring at 0-5 o C for 2 h, TLC showed that the intermediate was consumed. Isobutyryl chloride was added dropwise at 0-5 o C.
  • reaction mixture was heated at 65 °C for 4 h, allowed to cool to room temperature, poured into saturated aqueous sodium (150 mL) and extracted with dichloromethane (3 X 100 mL). The combined organic fractions were dried over sodium sulfate and concentrated in vacuo. The residue was purified over silica gel using hexane/ethyl acetate (4:1) as the eluent to afford 151 (3.5 g, 73%) as a colorless foam.

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EP21167491.6A EP3865136A1 (en) 2016-09-07 2017-09-06 2'-substituted-n6-substituted purine nucleotides for corona virus treatment
MYPI2019001191A MY197236A (en) 2016-09-07 2017-09-06 2'-substituted-n6-substituted purine nucleotides for rna virus treatment
EA201990628A EA037868B1 (ru) 2016-09-07 2017-09-06 2'-замещенные-n6-замещенные пуриновые нуклеотиды для лечения вызванных рнк-вирусом заболеваний
JP2019512772A JP2019526596A (ja) 2016-09-07 2017-09-06 Ｒｎａウイルス治療に対する２’−置換−ｎ６−置換プリンヌクレオチド
CN202310189960.6A CN116036114A (zh) 2016-09-07 2017-09-06 用于rna病毒治疗的2’-取代的-n6-取代的嘌呤核苷酸
AU2017324939A AU2017324939B2 (en) 2016-09-07 2017-09-06 2'-substituted-N6-substituted purine nucleotides for RNA virus treatment
CA3034648A CA3034648C (en) 2016-09-07 2017-09-06 2'-substituted-n6-substituted purine nucleotides for rna virus treatment
ES17849474T ES2907874T3 (es) 2016-09-07 2017-09-06 Nucleótidos de purina 2'-sustituidos-N6-sustituidos para el tratamiento de virus de ARN
CN201780054843.1A CN109689672B (zh) 2016-09-07 2017-09-06 用于rna病毒治疗的2’-取代的-n6-取代的嘌呤核苷酸
KR1020207025602A KR102456417B1 (ko) 2016-09-07 2017-09-06 Rna 바이러스 치료를 위한 2'-치환된-n6-치환된 퓨린 뉴클레오티드
SI201731075T SI3512863T1 (sl) 2016-09-07 2017-09-06 2'-substituirani-N6-substituirani purinski nukleotidi za zdravljenje virusa RNA
KR1020197009555A KR20190043602A (ko) 2016-09-07 2017-09-06 Rna 바이러스 치료를 위한 2'-치환된-n6-치환된 퓨린 뉴클레오티드
HRP20220278TT HRP20220278T1 (hr) 2016-09-07 2017-09-06 2'-supstituirani-n6-supstituirani purinski nukleotidi za liječenje bolesti izazvanih rnk virusima
EP22165102.9A EP4088725A1 (en) 2016-09-07 2017-09-06 2'-substituted-n6-substituted purine nucleotides for the treatment of a virus from the picornaviridae family
LTEPPCT/US2017/050323T LT3512863T (lt) 2016-09-07 2017-09-06 2'-pakeistieji-n6-pakeistieji purino nukleotidai, skirti gydymui rnr virusu
KR1020227035793A KR20220146668A (ko) 2016-09-07 2017-09-06 Rna 바이러스 치료를 위한 2'-치환된-n6-치환된 퓨린 뉴클레오티드
RU2019109263A RU2776918C2 (ru) 2016-09-07 2017-09-06 2'-замещенные-n6-замещенные пуриновые нуклеотиды для лечения вызванных рнк-вирусом заболеваний
DK17849474.6T DK3512863T3 (da) 2016-09-07 2017-09-06 2¿-substituerede-N6-substituerede purinnukleotider til behandling af RNA-virus
RS20220185A RS62943B1 (sr) 2016-09-07 2017-09-06 2’-supstituisani-n6-supstituisani purinski nukleotidi za lečenje bolesti izazvanih rnk virusima
PL17849474T PL3512863T3 (pl) 2016-09-07 2017-09-06 2'-Podstawione-N6-podstawione nukleotydy purynowe do leczenia zakażeń wirusem RNA
SG11201901457TA SG11201901457TA (en) 2016-09-07 2017-09-06 2'-substituted-n6-substituted purine nucleotides for rna virus treatment
BR112019004297A BR112019004297A2 (pt) 2016-09-07 2017-09-06 método, uso de uma quantidade eficaz de um composto, composto, e, composição farmacêutica.
EP17849474.6A EP3512863B1 (en) 2016-09-07 2017-09-06 2'-substituted-n6-substituted purine nucleotides for rna virus treatment
ZA2019/01061A ZA201901061B (en) 2016-09-07 2019-02-19 2'-substituted-n6-substituted purine nucleotides for rna virus treatment
US16/293,423 US10946033B2 (en) 2016-09-07 2019-03-05 2′-substituted-N6-substituted purine nucleotides for RNA virus treatment
US16/821,850 US20200222442A1 (en) 2016-09-07 2020-03-17 2'-substituted-n6-substituted purine nucleotides for rna virus treatment
AU2020220216A AU2020220216B2 (en) 2016-09-07 2020-08-21 2'-substituted-N6-substituted purine nucleotides for RNA virus treatment
US17/482,224 US11975016B2 (en) 2016-09-07 2021-09-22 2′-substituted-N6-substituted purine nucleotides for RNA virus treatment
CY20221100145T CY1125163T1 (el) 2016-09-07 2022-02-22 2΄-υποκατεστημενα-ν6-υποκατεστημενα πουρινο νουκλεοτιδια για την θεραπεια ιων rna
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