WO2013177415A1 - Lipid nanoparticle compositions for antisense oligonucleotides delivery - Google Patents

Lipid nanoparticle compositions for antisense oligonucleotides delivery Download PDF

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Publication number
WO2013177415A1
WO2013177415A1 PCT/US2013/042454 US2013042454W WO2013177415A1 WO 2013177415 A1 WO2013177415 A1 WO 2013177415A1 US 2013042454 W US2013042454 W US 2013042454W WO 2013177415 A1 WO2013177415 A1 WO 2013177415A1
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WO
WIPO (PCT)
Prior art keywords
lipid nanoparticle
cancer
nanoparticle composition
nucleic acid
lipids
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/US2013/042454
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English (en)
French (fr)
Inventor
Robert J. Lee
Young Bok Lee
Deog Joong Kim
Chang Ho Ahn
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Ohio State University
Original Assignee
Ohio State University
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority to MX2014014251A priority Critical patent/MX353567B/es
Priority to AU2013266232A priority patent/AU2013266232B2/en
Priority to KR1020147032915A priority patent/KR20150020180A/ko
Priority to BR112014027834A priority patent/BR112014027834A2/pt
Priority to JP2015514189A priority patent/JP6220389B2/ja
Priority to EP13726404.0A priority patent/EP2852415A1/en
Application filed by Ohio State University filed Critical Ohio State University
Priority to CN201380026005.5A priority patent/CN104428005B/zh
Priority to MX2018000744A priority patent/MX384803B/es
Priority to CA2871477A priority patent/CA2871477A1/en
Publication of WO2013177415A1 publication Critical patent/WO2013177415A1/en
Anticipated expiration legal-status Critical
Priority to AU2017245294A priority patent/AU2017245294B2/en
Ceased legal-status Critical Current

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    • C12Y304/21—Serine endopeptidases (3.4.21)
    • C12Y304/21064—Peptidase K (3.4.21.64)

Definitions

  • siRNA and other therapeutic oligonucleotides are a major technical challenge that has limited their potential for clinical translation.
  • LNs with a highly positive charge tend to interact non-specifically with target cells and circulating plasma proteins, and may cause cytotoxicity.
  • LNs with a highly negative charge cannot effectively incorporate nucleic acids, which are also negatively charged, and may trigger rapid RES-mediated clearance, reducing therapeutic efficacy.
  • LNs with a neutral to moderate charge are best suited for in vivo drug and gene delivery.
  • lipid nanoparticles that can encapsulate therapeutic oligonucleotides with high efficiency and fulfill physical and biological criteria for efficacious delivery.
  • certain embodiments includes lipid nanoparticles containing RX- 0201(Archexin ® ), which is a 20-mer phosphorothioate antisense oligonucleotide having a sequence that includes 5' gctgcatgatctccttggcg 3' (Seq. Id. No.: 1) against Akt-1, and/or RX-0047, which is a 20-mer phosphorothioate antisense oligonucleotide having a sequence that includes
  • Embodiments of the present invention also include a lipid nanoparticle composition that includes a macromolecule conjugated to a polymer and a therapeutic agent that is an ASO such as an ASO targeted to a portion of a nucleic acid encoding Akt-1, and which modulates the expression of Akt-1 or an ASO targeted to a portion of a nucleic acid encoding HIF-1, and which modulates the expression of HIF- 1.
  • a lipid nanoparticle composition that includes a macromolecule conjugated to a polymer and a therapeutic agent that is an ASO such as an ASO targeted to a portion of a nucleic acid encoding Akt-1, and which modulates the expression of Akt-1 or an ASO targeted to a portion of a nucleic acid encoding HIF-1, and which modulates the expression of HIF- 1.
  • the invention is also a method of diagnosing or treating a cancer or infectious disease, by administering an effective amount of a pharmaceutical composition as described herein to a patient in need thereof.
  • the cancer treated can be, for example, brain cancer, bladder cancer, lung cancer, breast cancer, melanoma, skin cancer, epidermal carcinoma, colon and rectal cancer, non-Hodgkin lymphoma, endometrial cancer, pancreatic cancer, kidney (renal cell) cancer, prostate
  • cancer leukemia thyroid cancer, head and neck, ovarian cancer, hepatocellular cancer, cervical cancer, sarcomas, gastric cancers, multiple myeloma, lymphomas, and gastrointestinal cancer, and uterine cancer.
  • the cancer is breast cancer, epidermal carcinoma, or pancreatic cancer.
  • FIG. 4 illustrates Akt-1 mRNA down-regulation in Panc-1 cells upon treatment of LCAN- RX-0201.
  • Figure 6 illustrates in vivo HIF- ⁇ mRNA expression in a KB xenograft tumor model.
  • Mice (5 mice per group) were injected intravenously with 3 mg/kg of PBS, free RX-0047, L-RX-0047 or LCAN-RX-0047 four times every three day (Q3Dx4).
  • Intratumoral expression of HIF- ⁇ mRNA was determined by real-time RT-PCR.
  • formulation refers to the lipid-coated albumin nanoparticle (LCAN) that includes the lipid nanoparticle and the cationized albumin-polymer conjugates identified herein that contain nucleic acids.
  • the formulation also includes the targeting agent, when present.
  • DMPE-PEG2000 dimyristoylphosphatidylethanolamine-PEG2000
  • the LN formulations described here may further comprise cationic polymers or conjugates of cationic polymers.
  • Cationic polymers or conjugates thereof may be used alone or in combination with lipid nanocarriers.
  • Suitable cationic polymers include, but are not limited to: polyethylenimine (PEI); pentaethylenehexamine (PEHA); spermine; spermidine; poly(L-lysine); poly(amido amine) (PAMAM) dendrimers; polypropyleneiminie dendrimers; poly(2-dimethylamino ethyl)- methacrylate (pDMAEMA); chitosan; tris(2-aminoethyl)amine and its methylated derivatives; and combinations thereof.
  • PEI polyethylenimine
  • PEHA pentaethylenehexamine
  • spermine spermine
  • spermidine poly(L-lysine)
  • PAMAM poly(amido amine) dendrimers
  • poly(glutamic acid) PGA
  • alginates PGA
  • dextrans xanthans
  • derivatized polymers and combinations thereof.
  • anionic polymers known in the art or developed subsequently may also be used in the invention.
  • a low molecular weight pentaethylenehexamine is conjugated to human serum albumin via cross linking agents, resulting in a hyper-cationized pH-responsive APC, also referred to herein as HSA-PEHA.
  • the PEHA-to-HSA ratio is between 1 and 30, preferably 5-20, even more preferably 8-15, even more preferably between 10-12.
  • the resulting formulation that includes the lipid nanoparticle and the incorporated hyper-cationized pH-responsive conjugate such as HSA-PEHA is referred to herein as a lipid-coated albumin nanoparticle (LCAN).
  • An exemplary LCAN is a lipid coated albumin nanoparticles which is composed of DOTAP/sPC/TPGS/HS A-PEHA.
  • RX-0201 (Archexin ® ) which is a 20-mer phosphorothioate antisense oligonucleotide, is targeted to a site in the coding region of the Akt-1 gene having the following sequence: 5' cgccaaggagatcatgcagc 3' at site 1,478 of Akt-1 gene (Seq. Id. No.: 3).
  • the sequence for the backbone of RX-0201 is complementary to this site.
  • RX-0616 comprising 5' agatagctggtgacagacag 3' (Seq. Id. No.: 5) hybridizable to the site beginning at position 2101 of Akt-1 gene, having the following sequence: 5' ctgtctgtcaccagctatct 3' (Seq. Id. No.: 6);
  • RX-0628 comprising 5' tcgaaaggtcaagtgctac 3' (Seq. Id. No.: 9) hybridizable to the site beginning at position 2493 of Akt-1 gene, having the following sequence: 5' gtagcacttgaccttttcga 3' (Seq. Id. No.: 10); RX-0632, comprising 5' tggtgcagcggcagcggcag 3' (Seq. Id. No.: 1 1) hybridizable to the site beginning at position 2603 of Akt-1 gene, having the following sequence: 5' ctgccgctgccgctgcacca 3' (Seq. Id. No.: 12); and
  • the antisense compounds of the invention encompass any pharmaceutically acceptable salts, esters, or salts of such esters, or any other compound which, upon administration to an animal including a human, is capable of providing (directly or indirectly) the biologically active metabolite or residue thereof. Accordingly, for example, the disclosure is also drawn to prodrugs and pharmaceutically acceptable salts of the compounds of the invention, pharmaceutically acceptable salts of such prodrugs, and other bioequivalents.
  • compositions that produce no adverse, allergic or other untoward reaction when administered to an animal, such as, for example, a human.
  • preparation of a pharmaceutical composition that contains at least one compound or additional active ingredient will be known to those of skill in the art in light of the present disclosure, as exemplified by
  • the carrier can be a solvent or dispersion medium containing, for example, water, ethanol, polyol (i.e., glycerol, propylene glycol, and liquid polyethylene glycol, and the like), suitable mixtures thereof, and/or vegetable oils.
  • polyol i.e., glycerol, propylene glycol, and liquid polyethylene glycol, and the like
  • suitable mixtures thereof and/or vegetable oils.
  • Proper fluidity may be maintained, for example, by the use of a coating, such as lecithin, by the maintenance of the required particle size in the case of dispersion and by the use of surfactants.
  • sterile powders for the preparation of sterile injectable solutions, some methods of preparation are vacuum-drying and freeze-drying techniques which yield a powder of the active ingredient plus any additional desired ingredient from a previously sterile-filtered solution thereof.
  • a powdered composition is combined with a liquid carrier such as, e.g., water or a saline solution, with or without a stabilizing agent.
  • Ointments include all oleaginous, adsorption, emulsion and water-soluble based compositions for topical application, while creams and lotions are those compositions that include an emulsion base only.
  • Topically administered medications may contain a penetration enhancer to facilitate adsorption of the active ingredients through the skin.
  • Suitable penetration enhancers include glycerin, alcohols, alkyl methyl sulfoxides, pyrrolidones and luarocapram.
  • Possible bases for compositions for topical application include polyethylene glycol, lanolin, cold cream and petrolatum as well as any other suitable absorption, emulsion or water-soluble ointment base.
  • Topical preparations may also include emulsifiers, gelling agents, and antimicrobial preservatives as necessary to preserve the composition and provide for a homogenous mixture.
  • Transdermal administration of the compositions may also comprise the use of a "patch.”
  • the patch may supply one or more compositions at a predetermined rate and in a continuous manner over a fixed period of time.
  • the compositions may be delivered by eye drops, intranasal sprays, inhalation, and/or other aerosol delivery vehicles.
  • Methods for delivering compositions directly to the lungs via nasal aerosol sprays has been described in U.S. Patents 5,756,353 and 5,804,212 (each specifically incorporated herein by reference in their entirety).
  • the delivery of drugs using intranasal microparticle resins (Takenaga et al., 1998) and lysophosphatidyl-glycerol compounds (U.S. Patent 5,725, 871, specifically incorporated herein by reference in its entirety) are also well- known in the pharmaceutical arts and could be employed to deliver the compositions described herein.
  • compositions disclosed herein may be delivered via an aerosol.
  • aerosol refers to a colloidal system of finely divided solid or liquid particles dispersed in a liquefied or pressurized gas propellant.
  • the typical aerosol for inhalation consists of a suspension of active ingredients in liquid propellant or a mixture of liquid propellant and a suitable solvent.
  • HSA-PEHA conjugates were synthesized by activation of carboxyls on HSA with EDC and forming amide linkages with amines on PEHA.
  • the HSA:PEHA:EDC molar ratio used during synthesis was 1 : 1500:200 (mol/mol).
  • HSA (25%, Purchased from Octapharma) was conjugated to pentaethylenehexamine (PEHA, purchased from Sigma- Aldrich) by reacting HSA with a large excess of PEHA in the presence of l-ethyl-3-(3-dimethylamino)-propylcarbodiimide (EDC) and sulfo-N-hydroxysuccinimide in 50 mM borate buffer or water at pH 8.0.
  • EDC pentaethylenehexamine
  • the HSA-PEHA product was purified by gel membrane chromatography on a PD-10 desalting column or by dialysis using MWCO 10,000 Spectrum membrane against ddH 2 0 (doubly distilled water) at 4 °C to remove unreacted PEHA and byproducts.
  • the dialysis buffer was replaced every 3-4 h until amines from PEHA became undetectable by the standard ninhydrin or trinitrobenzenesulfonic acid (TNBS) amine essay in the external buffer at the 3 h time point at the end of the dialysis cycle.
  • TNBS trinitrobenzenesulfonic acid
  • the micelles were then dialyzed against deionized water using a Spectrum dialysis membrane with a molecular weight cut-off (MWCO) of 14 kDa to remove low molecular weight by-products.
  • MWCO molecular weight cut-off
  • the product F-PEG-CHEMS was then dried by lyophilization, which yielded a yellow powder product (130 mg) with a yield of 76.5%.
  • the identity of the product was confirmed by thin-layer chromatography (TLC) and by ⁇ NMR in DMSO-d 6 . 6.
  • the RGD targeted LCAN product Solution F was purified by tangential flow diafiltration, MWCO 30 kDa membrane in which included the concentration of the Solution F to 0.5 mg/mL in RX-0201 concentration as a first, diafiltration against 5 mM phosphate buffer (pH 7.4) until the RX-0201 concentration in the permeate solution drops below 10 ⁇ g/mL as a second step and the concentration of the product to 2.5 mg/mL in RX-0201 concentration as a final step. To the product, 1/4 volume of 50% sucrose was added to produce a solution of 10% sucrose and filtered through a 0.22 ⁇ sterile filter; use pre-filtration if necessary.
  • Example 3 Freeze and thaw stability and lyophilization
  • Example 4 Biological tests 1. mRNA and protein down-regulation by liposomal formulation and LCAN formulation in cancer cells

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