WO2012068109A2 - Pyrimidine hydroxy amide compounds as protein deacetylase inhibitors and methods of use thereof - Google Patents

Pyrimidine hydroxy amide compounds as protein deacetylase inhibitors and methods of use thereof Download PDF

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Publication number
WO2012068109A2
WO2012068109A2 PCT/US2011/060791 US2011060791W WO2012068109A2 WO 2012068109 A2 WO2012068109 A2 WO 2012068109A2 US 2011060791 W US2011060791 W US 2011060791W WO 2012068109 A2 WO2012068109 A2 WO 2012068109A2
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Prior art keywords
optionally substituted
compound
alkyl
aryl
heteroaryl
Prior art date
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PCT/US2011/060791
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English (en)
French (fr)
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WO2012068109A3 (en
Inventor
John H. Van Duzer
Ralph Mazitschek
Yanbing Ding
Nan Yu
Yun Cao
Yong Liu
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Acetylon Pharmaceuticals Inc
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Acetylon Pharmaceuticals Inc
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First worldwide family litigation filed litigation Critical https://patents.darts-ip.com/?family=46047943&utm_source=google_patent&utm_medium=platform_link&utm_campaign=public_patent_search&patent=WO2012068109(A2) "Global patent litigation dataset” by Darts-ip is licensed under a Creative Commons Attribution 4.0 International License.
Priority to JP2013539949A priority Critical patent/JP6041808B2/ja
Priority to KR1020137015474A priority patent/KR20130115300A/ko
Priority to BR112013011868A priority patent/BR112013011868A2/pt
Priority to ES11840803.8T priority patent/ES2568260T3/es
Priority to MX2013005392A priority patent/MX2013005392A/es
Priority to HK14102178.4A priority patent/HK1189002B/en
Priority to EA201390711A priority patent/EA025345B1/ru
Priority to PH1/2013/500964A priority patent/PH12013500964A1/en
Priority to CN201180055168.7A priority patent/CN103429574B/zh
Priority to AU2011329028A priority patent/AU2011329028B2/en
Priority to SG2013035498A priority patent/SG190211A1/en
Priority to EP11840803.8A priority patent/EP2640709B1/en
Application filed by Acetylon Pharmaceuticals Inc filed Critical Acetylon Pharmaceuticals Inc
Priority to NZ610225A priority patent/NZ610225A/en
Priority to CA2818125A priority patent/CA2818125A1/en
Publication of WO2012068109A2 publication Critical patent/WO2012068109A2/en
Publication of WO2012068109A3 publication Critical patent/WO2012068109A3/en
Priority to IL226326A priority patent/IL226326A0/en
Anticipated expiration legal-status Critical
Priority to PH12015500832A priority patent/PH12015500832A1/en
Priority to IL249594A priority patent/IL249594A0/en
Ceased legal-status Critical Current

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    • C07D239/28—Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings not condensed with other rings having three or more double bonds between ring members or between ring members and non-ring members with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, directly attached to ring carbon atoms
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Definitions

  • Ri is H, alkyl, haloalkyl, alkenyl, aryl, arylalkyl, heteroarylalkyl, heteroaryl, heterocyclic, carbocyclic, -C(0)R 5 , or -S(0) P R 5 ; each of which may be optionally substituted; and
  • each R5 is independently H; optionally substituted alkyl, optionally substituted carbocyclic, optionally substituted heterocyclic, optionally substituted aryl, or optionally substituted heteroaryl;
  • cycloalkyl denotes a monovalent group derived from a monocyclic or polycyclic saturated or partially unsatured carbocyclic ring compound.
  • compounds of the invention may optionally be substituted with one or more substituents, such as are illustrated generally above, or as exemplified by particular classes, subclasses, and species of the invention. It will be appreciated that the phrase “optionally substituted” is used interchangeably with the phrase “substituted or unsubstituted. " In general, the term “substituted”, whether preceded by the term “optionally” or not, refers to the replacement of hydrogen radicals in a given structure with the radical of a specified substituent.
  • heteroaralkyl “optionally substituted heterocycloalkyl,” and any other optionally substituted group as used herein, refer to groups that are substituted or unsubstituted by independent replacement of one, two, or three or more of the hydrogen atoms thereon with substituents including, but not limited to:
  • This invention also encompasses pharmaceutical compositions containing, and methods of treating disorders through administering, pharmaceutically acceptable prodrugs of compounds of the invention.
  • compounds of the invention having free amino, amido, hydroxy or carboxylic groups can be converted into prodrugs.
  • Prodrugs include compounds wherein an amino acid residue, or a polypeptide chain of two or more (e.g., two, three or four) amino acid residues is covalently joined through an amide or ester bond to a free amino, hydroxy or carboxylic acid group of compounds of the invention.
  • phosphoryloxymethyloxy carbonyls as outlined in Advanced Drug Delivery Reviews, 1996, 19, 1 15.
  • Carbamate prodrugs of hydroxy and amino groups are also included, as are carbonate prodrugs, sulfonate esters and sulfate esters of hydroxy groups.
  • Derivatization of hydroxy groups as (acyloxy)methyl and (acyloxy)ethyl ethers wherein the acyl group may be an alkyl ester, optionally substituted with groups including but not limited to ether, amine and carboxylic acid functionalities, or where the acyl group is an amino acid ester as described above, are also encompassed.
  • Prodrugs of this type are described in J. Med. Chem. 1996, 39, 10.
  • Free amines can also be derivatized as amides, sulfonamides or phosphonamides. All of these prodrug moieties may incorporate groups including but not limited to ether, amine and carboxylic acid functionalities
  • R 2 is H.
  • each R A is indpendently alkyl, alkoxy, cycloalkyl, aryl, heterocycloalkyl, heteroaryl, arylalkyl, heteroarylalkyl, haloalkyl, haloalkoxy, halo, OH, -N0 2 , -CN, or -NH 2 ; or two R A groups together with the atoms to which each is attached, can form an optionally substituted ring; and
  • each R A is indpendently alkyl, alkoxy, cycloalkyl, aryl, heterocycloalkyl, heteroaryl, arylalkyl, heteroarylalkyl, haloalkyl, haloalkoxy, halo, OH, -N0 2 , -CN, or -NH 2 ; or two R A groups together with the atoms to which each is attached, can form an optionally substituted ring; and m is 0, 1 , or 2.
  • R X and R Y together with the carbon to which each is attached, forms a cycloalkyl or heterocycloalkyl, each of which is optionally substituted;
  • R X is ⁇ , methyl or pyridine
  • R Y is ⁇ .
  • a compound of the invention can be prepared as a pharmaceutically acceptable acid addition salt by reacting the free base form of the compound with a pharmaceutically acceptable inorganic or organic acid.
  • a pharmaceutically acceptable base addition salt of a compound of the invention can be prepared by reacting the free acid form of the compound with a pharmaceutically acceptable inorganic or organic base.
  • the resolution can be carried out in the presence of a resolving agent, by chromatography or by repeated crystallization or by some combination of these techniques which are known to those skilled in the art. Further details regarding resolutions can be found in Jacques, et al., Enantiomers, Racemates, and Resolutions (John Wiley & Sons, 1981).
  • the compounds of this invention may also be represented in multiple tautomeric forms, in such instances, the invention expressly includes all tautomeric forms of the compounds described herein. When the compounds described herein contain olefinic double bonds or other centers of geometric asymmetry, and unless specified otherwise, it is intended that the compounds include both E and Z geometric isomers. Likewise, all tautomeric forms are also intended to be included.
  • any carbon-carbon double bond appearing herein is selected for convenience only and is not intended to designate a particular configuration unless the text so states; thus a carbon-carbon double bond depicted arbitrarily herein as trans may be cis, trans, or a mixture of the two in any proportion. All such isomeric forms of such compounds are expressly included in the present invention. All crystal forms of the compounds described herein are expressly included in the present invention.
  • methods for the treatment of cancer comprising administering a therapeutically effective amount of an inventive compound (i.e., of any of the formulae herein), as described herein, to a subject in need thereof.
  • an inventive compound i.e., of any of the formulae herein
  • the subject is identified as in need of such treatment.
  • a method for the treatment of cancer comprising
  • MM Multiple myeloma
  • Novel agents have recently been developed which target not only MM cells, but also the bone marrow (BM) microenvironment, and can overcome conventional drug resistance
  • bortezomib enhances sensitivity and can overcome resistance in MM cells to conventional
  • the present invention in another aspect, includes a composition for coating an implantable device comprising a compound of the present invention as described generally above, and a carrier suitable for coating said implantable device.
  • the present invention includes an implantable device coated with a composition comprising a compound of the present invention as described generally above, and a carrier suitable for coating said implantable device.
  • the invention provides a pharmaceutical composition
  • a pharmaceutical composition comprising a compound of any of the formulae herein (e.g., formula I), or a pharmaceutically acceptable ester, salt, or prodrug thereof, together with a pharmaceutically acceptable carrier.
  • the oral compositions can also include adjuvants such as wetting agents, emulsifying and suspending agents, sweetening, flavoring, and perfuming agents.
  • HDAC1 0.2 ng/ml
  • HDAC2 0.08 ng/ml
  • HDAC3 2 ng/ml
  • the final substrate concentrations used were 16 ⁇ (HDAC1), 10 ⁇ (HDAC2), 17 ⁇ (HDAC3) and 14 ⁇ (HDAC6).
  • Five ⁇ of compounds and 20 ⁇ of enzyme were added to wells of a black, opaque 384 well plate in duplicate. Enzyme and compound were incubated together at room temperature for 10 minutes. Five ⁇ of substrate was added to each well, the plate was shaken for 60 seconds and placed into a Victor 2 microtiter plate reader. The development of fluorescence was monitored for 60 min and the linear rate of the reaction was calculated.
  • the IC 50 was determined using Graph Pad Prism by a four parameter curve fit.

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CA2818125A CA2818125A1 (en) 2010-11-16 2011-11-15 Pyrimidine hydroxy amide compounds as protein deacetylase inhibitors and methods of use thereof
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BR112013011868A BR112013011868A2 (pt) 2010-11-16 2011-11-15 compostos de pirimidina hidróxi amida como inibidores da proteína desacetilase, composição farmacêutica e uso dos referidos compostos
ES11840803.8T ES2568260T3 (es) 2010-11-16 2011-11-15 Compuestos de pirimidin hidroxi amida como inhibidores de proteína desacetilasa y métodos de uso de los mismos
MX2013005392A MX2013005392A (es) 2010-11-16 2011-11-15 Compuestos de hidroxiamida pirimidina como inhibidores de la proteina deacetilasa y metodo de uso de estos.
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EA201390711A EA025345B1 (ru) 2010-11-16 2011-11-15 Гидроксиамидные соединения пиримидина в качестве ингибиторов деацетилаз белков и фармацевтические композиции для лечения заболевания, обусловленного hdac6, включающие эти соединения
PH1/2013/500964A PH12013500964A1 (en) 2010-11-16 2011-11-15 Pyrimidine hydroxy amide compounds as protein deacetylase inhibitors and methods of use thereof
CN201180055168.7A CN103429574B (zh) 2010-11-16 2011-11-15 作为蛋白质去乙酰化酶抑制剂的嘧啶羟基酰胺化合物和其使用方法
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WO2012068109A3 (en) 2012-08-02
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SG190211A1 (en) 2013-06-28
JP2017019820A (ja) 2017-01-26
CN103429574A (zh) 2013-12-04
US20140142104A1 (en) 2014-05-22
EP2640709B1 (en) 2016-04-06
EP2640709A4 (en) 2014-04-02
MX2013005392A (es) 2013-07-29
BR112013011868A2 (pt) 2016-08-23
US8614223B2 (en) 2013-12-24
IL226326A0 (en) 2013-07-31
JP6041808B2 (ja) 2016-12-14
EP3067346A1 (en) 2016-09-14
SG10201509324QA (en) 2015-12-30
EA201390711A1 (ru) 2014-03-31
US20170096403A1 (en) 2017-04-06
PH12013500964A1 (en) 2013-07-08
CN103429574B (zh) 2016-11-16
NZ610225A (en) 2015-08-28
AU2011329028B2 (en) 2016-12-22
CN107011270A (zh) 2017-08-04
US9409890B2 (en) 2016-08-09
EP2640709A2 (en) 2013-09-25
AU2016266069A1 (en) 2016-12-22
CL2013001381A1 (es) 2014-04-11
IL249594A0 (en) 2017-02-28
PH12015500832A1 (en) 2015-10-19
US20120121502A1 (en) 2012-05-17
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