WO2005014818A1 - 癌高発現遺伝子 - Google Patents
癌高発現遺伝子 Download PDFInfo
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- WO2005014818A1 WO2005014818A1 PCT/JP2004/011650 JP2004011650W WO2005014818A1 WO 2005014818 A1 WO2005014818 A1 WO 2005014818A1 JP 2004011650 W JP2004011650 W JP 2004011650W WO 2005014818 A1 WO2005014818 A1 WO 2005014818A1
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Classifications
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- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
- C12Q1/6886—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
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- A61K31/70—Carbohydrates; Sugars; Derivatives thereof
- A61K31/7088—Compounds having three or more nucleosides or nucleotides
- A61K31/711—Natural deoxyribonucleic acids, i.e. containing only 2'-deoxyriboses attached to adenine, guanine, cytosine or thymine and having 3'-5' phosphodiester links
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- A61K39/0011—Cancer antigens
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- A—HUMAN NECESSITIES
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/82—Translation products from oncogenes
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
- C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
- C07K16/28—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
- C07K16/30—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants from tumour cells
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- G—PHYSICS
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- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
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- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
- G01N33/574—Immunoassay; Biospecific binding assay; Materials therefor for cancer
- G01N33/57484—Immunoassay; Biospecific binding assay; Materials therefor for cancer involving compounds serving as markers for tumor, cancer, neoplasia, e.g. cellular determinants, receptors, heat shock/stress proteins, A-protein, oligosaccharides, metabolites
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- A—HUMAN NECESSITIES
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- A61K38/00—Medicinal preparations containing peptides
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/136—Screening for pharmacological compounds
Definitions
- the present invention relates to a gene associated with cancer, a protein encoded by the gene, and an antibody recognizing the protein.
- the gene, protein and antibody of the present invention can be used in the diagnosis and treatment of cancer, and in the development of therapeutic agents for cancer. Background art
- Prior art document information relevant to the present invention includes: EP1033401;
- An object of the present invention is to provide genes and proteins that can be used as cancer diagnostic and therapeutic agents.
- DISCLOSURE OF THE INVENTION The present inventors have found that the expression of a specific gene is advanced in cancer tissues, and have completed the present invention. That is, the present invention provides a protein encoded by a gene having the nucleotide sequence set forth in any one of SEQ ID NOs: 1 to 65, or a fragment thereof.
- the present invention provides SEQ ID Nos: 1, 2, 28, 29, 30, 31,
- a gene having the nucleotide sequence described in any of 32, 51, 52, 60 and 61, and a protein encoded by the gene or a fragment thereof are provided.
- the gene has the nucleotide sequence set forth in any of SEQ ID NOs: 1, 2, 28, 29, 30, 31 and 32, more preferably the nucleotide sequence set forth in SEQ ID NOs: 1 or 2.
- proteins and fragments are useful as compositions for diagnosing or treating lung cancer.
- the present invention provides SEQ ID NOs: 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 22, 23, 24, 25, 26, 27, 33, 34 , 35, 36, 37, 38, 39, 40, 41, 42, 53, 54 and 55, and a gene encoded by the gene or a fragment thereof.
- the gene is set forth in any of SEQ ID NOs: 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 22, 23, 24, 25, and 26 Having a nucleotide sequence.
- proteins and fragments are useful as compositions for diagnosing or treating gastric cancer.
- the present invention relates to SEQ ID NOs: 3, 7, 20, 21, 46, 47,
- a gene having the nucleotide sequence described in any of 48, 49 and 50, and a protein encoded by the gene or a fragment thereof are provided.
- the gene is SEQ ID NO: 3, 7, 20, 21, 46, 49 and
- proteins and fragments are useful as compositions for diagnosing or treating colorectal cancer.
- the present invention provides SEQ ID NOs: 14, 15, 16, 17, 18, 19, 43, 44, 45, 56, 57, 58, 59, 62, 63, 64 and 65.
- the gene is a nucleotide sequence described in any of SEQ ID NOs: 14, 15, 16, 17, 18, 19, 45, 56, 57, 58, 64 and 65, more preferably SEQ ID NO: 14, It has the nucleotide sequence described in any of 15, 16, 17, 18, 19, 64 and 65.
- proteins and fragments are useful as compositions for diagnosing or treating liver cancer.
- the gene is selected from the group consisting of SEQ ID NOs: 1, 9, 10, 14, 20, 22, 24, 25, 26, 27, 28, 29, 32, 38, 39, 40, 44, 51, 52, 53, 54 and 58, more preferably any of SEQ ID NOs: 1, 9, 10, 14, 20, 22, 24, 25 and 26 Having a nucleotide sequence.
- the gene is SEQ ID NO: 2, 3, 4, 5, 6, 7, 8, 11, 12, 13, 15, 16, 17, 18, 19, 21, 2 3, 30, 31, 33 ', 34, 35, 36, 37, 41, 42, 43, 45, 46, 47, 48, 49, 50, 55, 56, 57, 59, 60, 61, 62 and And SEQ ID NOS: 2, 3, 4, 5, 6, 7, 8, 11, 12, 13, 15, 16, 17, 18, 19, 21 And 23.
- the present invention provides a cell or vector expressing the above-described gene or a fragment thereof. These cells and vectors are useful for production of the protein of the present invention, production of antibodies against the protein, diagnosis and treatment of cancer, and the like.
- the present invention provides a protein having the amino acid sequence set forth in SEQ ID NOs: 66 to 123 or a fragment thereof. These proteins or fragments thereof are useful as antigens in the production of antibodies or for diagnosis and treatment of cancer.
- the present invention provides an antibody or an antigen-binding fragment thereof that recognizes the above-described protein or a fragment thereof.
- the present invention also provides a cell that produces such an antibody.
- the present invention relates to a polynucleotide having the nucleotide sequence set forth in any one of SEQ ID NOs: 1 to 65 or a nucleotide having a nucleotide sequence complementary thereto, or a condition in which these polynucleotides are highly stringent. Provided are polynucleotides that can be hybridized below.
- the present invention relates to a polynucleotide having at least 12 consecutive nucleotide sequences of the nucleotide sequence set forth in any one of SEQ ID NOs: 16 to 65 or a nucleotide sequence complementary thereto, or Provided is an oligonucleotide having a length of at least 12 nucleotides, which is capable of hybridizing under high stringency conditions to a polynucleotide having the nucleotide sequence described in any one of 1 to 65.
- polynucleotides are useful for cancer diagnosis, protein production, primers, antisense siRNA for inhibiting gene expression, and the like.
- the invention provides a method of identifying a compound having anti-cancer activity, comprising contacting a cultured human cell with a test compound, and wherein the cell comprises any of SEQ ID NOs: 1-65. And c) identifying a compound that causes a change in the expression level of the gene containing the nucleotide sequence described in (a) as a compound having anticancer activity. .
- the present invention provides a method for diagnosing cancer, comprising detecting the C20orfl02 protein.
- the cancer is lung, liver, or cancer.
- the C20orfl02 protein secreted extracellularly is preferably detected. Also preferably, the method of the present invention
- C20orfl02 protein in blood, serum, or plasma, or C20orfl02 protein isolated from cells is detected.
- the invention provides the following step:
- FIG. 1 shows the results of expression analysis of the cancer-related gene TEG1
- FIG. 2 shows the results of expression analysis of the cancer-related gene TEG2.
- FIG. 3 shows the results of expression analysis of the cancer-related gene TEG2.
- FIG. 4 shows the results of expression analysis of the cancer-related gene TEG3.
- FIG. 5 shows the results of expression analysis of the cancer-related gene TEG4.
- FIG. 6 shows the results of expression analysis of the cancer-related gene TEG5.
- FIG. 7 shows the results of expression analysis of the cancer-related gene TEG6.
- FIG. 8 shows the results of expression analysis of the cancer-related gene TEG6.
- FIG. 9 shows the results of expression analysis of the cancer-related gene TEG7.
- FIG. 10 shows the results of expression analysis of the cancer-related gene TEG8.
- FIG. 11 shows the results of expression analysis of the cancer-related gene TEG9.
- FIG. 12 shows the results of expression analysis of the cancer-related gene TEG10.
- FIG. 13 shows the results of expression analysis of the cancer-related gene TEG11.
- FIG. 14 shows the results of expression analysis of the cancer-related gene TEG12.
- FIG. 15 shows the results of expression analysis of the cancer-related gene TEG13.
- FIG. 16 shows the results of expression analysis of the cancer-related gene TEG14.
- FIG. 17 shows the results of expression analysis of the cancer-related gene TEG15.
- FIG. 18 shows the results of expression analysis of the cancer-related gene TEG16.
- FIG. 19 shows the results of expression analysis of the cancer-related gene TEG17.
- FIG. 20 shows the results of expression analysis of the cancer-related gene TEG18.
- FIG. 21 shows the results of expression analysis of the cancer-related gene TEG19.
- FIG. 22 shows the results of expression analysis of the cancer-related gene TEG20.
- FIG. 23 shows the results of expression analysis of the cancer-related gene TEG21.
- FIG. 24 shows the results of expression analysis of the cancer-related gene TEG22.
- FIG. 25 shows the results of expression analysis of the cancer-related gene TEG23.
- FIG. 26 shows the results of expression analysis of the cancer-related gene TEG24.
- FIG. 27 shows the results of expression analysis of the cancer-related gene TEG25.
- FIG. 28 shows the results of expression analysis of the cancer-related gene TEG26.
- FIG. 29 shows the results of expression analysis of the cancer-related gene TEG27.
- FIG. 30 shows the results of expression analysis of the cancer-related gene TEG28.
- FIG. 31 shows the results of expression analysis of the cancer-related gene TEG29.
- FIG. 32 shows the results of expression analysis of the cancer-related gene TEG30.
- FIG. 33 shows the results of expression analysis of the cancer-related gene TEG31.
- FIG. 34 shows the results of expression analysis of the cancer-related gene TEG32.
- FIG. 35 shows the results of expression analysis of the cancer-related gene TEG33.
- FIG. 36 shows the results of expression analysis of the cancer-related gene TEG34.
- FIG. 37 shows the results of expression analysis of the cancer-related gene TEG35.
- FIG. 38 shows the results of expression analysis of the cancer-related gene TEG36.
- FIG. 39 shows the results of expression analysis of the cancer-related gene TEG37.
- FIG. 40 shows the results of expression analysis of the cancer-related gene TEG38.
- FIG. 41 shows the results of expression analysis of the cancer-related gene TEG39.
- FIG. 42 shows the results of expression analysis of the cancer-related gene TEG40.
- FIG. 43 shows the results of expression analysis of the cancer-related gene TEG41.
- FIG. 44 shows the results of expression analysis of the cancer-related gene TEG42.
- FIG. 45 shows the results of expression analysis of the cancer-related gene TEG43.
- FIG. 46 shows the results of expression analysis of the cancer-related gene TEG44.
- FIG. 47 shows the results of expression analysis of the cancer-related gene TEG45.
- FIG. 48 shows the result of expression analysis of the cancer-related gene TEG46.
- FIG. 49 shows the results of expression analysis of the cancer-related gene TEG47.
- FIG. 50 shows the results of expression analysis of the cancer-related gene TEG48.
- FIG. 51 shows the results of expression analysis of the cancer-related gene TEG49.
- FIG. 52 shows the results of expression analysis of the cancer-related gene TEG50.
- FIG. 53 shows the results of expression analysis of the cancer-related gene TEG51.
- FIG. 54 shows the results of expression analysis of the cancer-related gene TEG52.
- FIG. 55 shows the results of expression analysis of the cancer-related gene TEG53.
- FIG. 56 shows the result of expression analysis of the cancer-related gene TEG5.
- FIG. 57 shows the results of expression analysis of the cancer-related gene TEG55.
- FIG. 58 shows the results of expression analysis of the cancer-related gene TEG56.
- FIG. 59 shows the results of expression analysis of the cancer-related gene TEG57.
- FIG. 60 shows the results of expression analysis of the cancer-related gene TEG58.
- FIG. 61 shows the results of expression analysis of the cancer-related gene TEG59.
- FIG. 62 shows the results of expression analysis of the cancer-related gene TEG60.
- FIG. 63 shows the results of expression analysis of the cancer-related gene TEG61.
- FIG. 64 shows the results of expression analysis of the cancer-related gene TEG62.
- FIG. 65 shows the results of expression analysis of the cancer-related gene TEG63.
- FIG. 66 shows the results of expression analysis of the cancer-related gene TEG64.
- FIG. 67 shows the nucleotide sequence and amino acid sequence of the novel gene K # 1.
- FIG. 68 shows an alignment between the novel gene K # 1 and GenBank No. XM-067369.
- FIG. 69 shows the results of analyzing the amino acid sequence motif of the novel gene K # 1.
- FIG. 70 shows the nucleotide sequence and amino acid sequence of the novel gene # 2 (clone 11).
- FIG. 71 shows the nucleotide sequence and amino acid sequence of novel gene # 2 (clone 18).
- Figure 72 shows the amino acid sequences of the novel gene ⁇ # 2 (clone 11) and the human LIN-28, nematode LIN-28, African linac LIN-28, Drosophila LIN-28 and mouse LIN-28 2 shows a comparison.
- FIG. 73 shows the expression of the C20orfl02 gene in lung squamous cell carcinoma.
- FIG. 74 shows detection of C20orfl02 protein molecules in various cancer cell lines and their culture supernatants using an anti-C20orfl02 antibody.
- FIG. 75 shows the results of expression analysis of C20orfl02 protein in lung adenocarcinoma tissue using an anti-C20orfl02 antibody.
- Figure 76 shows the detection of hNotum protein molecules in various cancer cell lines and their culture supernatants using anti-hNotum antibodies.
- FIG. 77 shows the expression of hNotum protein in liver cancer tissue using anti-hNotum antibody.
- FIG. 78 shows the detection of ⁇ # 2 protein molecule in ⁇ # 2 forced expression cell lines and various cancer cell lines using an anti-K # 2 antibody.
- FIG. 79 shows the results of the use of anti-antibodies for the expression of ⁇ # 2 protein in liver cancer tissue.
- FIG. 80 shows detection of KIAA1359 protein molecules in KIAA1359 forced expression cell lines and various cancer cell lines using an anti-KIAA1359 antibody.
- FIG. 81 shows the results of expression analysis of KIAA1359 protein in gastric cancer tissues using an anti-KIAA1359 antibody.
- FIG. 82 shows the detection of PEG10 protein molecules in PEG10 forced expression cell lines and various cancer cell lines using an anti-PEG10 / ORF2 antibody.
- FIG. 83 shows the results of analysis of the expression of PEG10 protein in hepatocellular carcinoma tissue using the anti-PEG10 / ORF2 antibody.
- FIG. 84 shows detection of DUSP9 protein molecule in a DUSP9 forced expression cell line and various cancer cell lines using an anti-DUSP9 antibody.
- FIG. 85 shows the results of analysis of the expression of DUSP9 protein in hepatocellular carcinoma tissue using the anti-DUSP9 antibody.
- FIG. 86 shows the results of analyzing the expression of Cystatin SN protein in colorectal cancer tissues using an anti-Cystatin SN antibody.
- FIG. 87 shows the results of expression analysis of SFRP4 protein in gastric pole tissue using an anti-SFRP4 antibody.
- FIG. 88 shows detection of SFRP4 protein in the culture supernatant of COS7 cells in which SFRP4 was forcibly expressed using an anti-SFRP4 antibody. Detailed description of the invention.
- the present invention provides a gene for which the expression of a specific gene is enhanced in a cancer tissue, and a composition for diagnosing and treating cancer using the protein encoded by the gene.
- the present invention provides a protein encoded by the cancer-associated gene set forth in SEQ ID NOs: 1-65 or a fragment thereof.
- the composition of the present invention comprises a protein having the amino acid sequence set forth in SEQ ID NOs: 66-123 or a fragment thereof.
- the protein of the present invention or a fragment thereof is useful as an antigen in diagnosis and treatment of cancer and in antibody production.
- the protein or a fragment thereof is a mutant in which one or several amino acid residues have been deleted, substituted or added from the above-mentioned sequence, as long as it has the desired immunogenicity. There may be.
- Such a variant preferably has at least 80%, preferably 90% or more, More preferably, it has an amino acid sequence having 95% or more identity.
- Amino acid sequence identity is expressed by dividing the number of residues that are identical in the two sequences to be compared by the total number of residues and multiplying by 100.
- the amino acid residue to be mutated is desirably mutated to another amino acid that preserves the properties of the amino acid side chain.
- the properties of amino acid side chains include hydrophobic amino acids (A, I, L, M, F, P, W, Y, V), hydrophilic amino acids (R, D, N, C, E, Q, G, H, K, S, T), amino acids with aliphatic side chains (G, A, V, L, I, P), amino acids with hydroxyl-containing side chains (S, ⁇ , ⁇ ), sulfur-containing side chains Amino acids (C, M) having carboxylic acid and amide-containing side chains (D, N, E, Q), amino groups having base-containing side chains (R, K, ⁇ ), aromatic-containing side chains (H, F, Y, W) having an amino acid (each parenthesis represents a single letter of the amino acid).
- Enzymol. 100, 468.500, Kramer, W. et al. (1984) Nucleic Acids Res. 12, 9441-9456, Kramer W, and Fritz HJ (1987) Methods.Enzymol. 154, 350-367, Kunkel, TA (l985 ) Proc Natl Acad Sci USA. 82, 488.492, Kunkel (1988) Methods Enzymol. 85, 2763-2766) can be used to appropriately introduce mutations into amino acids to prepare a protein equivalent to the protein.
- the protein of the present invention may vary in amino acid sequence, molecular weight, isoelectric point, presence / absence and form of sugar chains, etc., depending on the cell, host, or purification method that produces the protein described below.
- the protein of the present invention when expressed in a prokaryotic cell, for example, Escherichia coli, a methionine residue is added to the N-terminal of the amino acid sequence of the original protein.
- the proteins of the present invention also include such proteins.
- the protein of the present invention can be prepared as a recombinant protein or a natural protein by methods known to those skilled in the art.
- a DNA encoding the protein of the present invention was incorporated into an appropriate expression vector, and the resulting transformant was introduced into an appropriate host cell, and a transformant was recovered to obtain an extract.
- chromatography such as ion exchange, reverse phase, gel filtration, or the like, or by applying an antibody to the protein of the present invention to an affinity chromatography on a column immobilized on a column, or a combination of two or more of these columns Purification and preparation are possible.
- the protein of the present invention when expressed in a host cell (for example, an animal cell or Escherichia coli) as a fusion protein with a dalubithione S-transferase protein or as a recombinant protein to which a plurality of histidines are added.
- a host cell for example, an animal cell or Escherichia coli
- the expressed recombinant protein can be purified using a Dalphin thione column or a nickel column. After purification of the fusion protein, if necessary, regions other than the target protein in the fusion protein can be cleaved with thrombin or Factor-Xa and removed.
- the antibody may be a polyclonal antibody or a monoclonal antibody.
- the present invention also includes fragments (partial peptides) of the protein of the present invention.
- the fragment of the present invention can be used, for example, for producing an antibody against the protein of the present invention, for screening for a compound that binds to the protein of the present invention, and for screening for a promoter or inhibitor of the protein of the present invention.
- the protein of the present invention Quality gonzo ⁇ can be a competitive inhibitor.
- the fragment of the present invention When used as an immunogen, the fragment of the present invention has an amino acid sequence of at least 7 amino acids or more, preferably 8 amino acids or more, and more preferably 9 amino acids or more. When used as a competitive inhibitor of the protein of the present invention, it contains an amino acid sequence of at least 100 amino acids or more, preferably 200 amino acids or more, more preferably 300 amino acids or more.
- the fragment of the present invention can be produced by a genetic engineering technique, a known peptide synthesis method, or by cleaving the protein of the present invention with an appropriate peptidase.
- the peptide may be synthesized by, for example, either a solid phase synthesis method or a liquid phase synthesis method.
- the present invention also provides a vector into which the DNA of the present invention has been introduced.
- the vector of the present invention is useful for retaining the DNA of the present invention in host cells or expressing the protein of the present invention.
- the vector is amplified in Escherichia coli (e.g., JM109, DH5a, HB101, XLlBlue), etc. It is preferable that the gene has "ori" and further has a transformed gene of Escherichia coli (for example, a drug resistance gene that can be identified by any drug (ampicillin-tetracycline, kanamycin, chloramphenicol)).
- Escherichia coli e.g., JM109, DH5a, HB101, XLlBlue
- the gene has "ori” and further has a transformed gene of Escherichia coli (for example, a drug resistance gene that can be identified by any drug (ampicillin-tetracycline, kanamycin, chloramphenicol)).
- vectors examples include M13-based vectors, pUC-based vectors, pBR322, pBluescript, pCR-Script, and the like.
- pGEM-T For sub-cloning and excision of cDNA, in addition to the above vectors, for example, pGEM-T,
- an expression vector is particularly useful.
- an expression vector for example, in the case of expression in E. coli, in addition to having the above-mentioned characteristics such that the vector is amplified in E. coli, the host may be JM109, DH5a, HB101, XLl-Blue, etc.
- promoters that can be efficiently expressed in Escherichia coli, such as the lacZ promoter—Evening ( Ward et al., Nature ( 1989 ) 341, 544-546; FASEB J.
- the vector may contain a signal sequence for protein content.
- a signal sequence for protein secretion a pelB signal sequence (Lei, SP, et al J. Bacteriol. (1987) 169, 4379) may be used for production in E. coli periplasm.
- the introduction of the vector into the host cell can be carried out using, for example, a calcium chloride method or an electoral poration method.
- a mammalian expression vector for example, pcDNA3 (manufactured by Invitrogen) or pEGF-BOS (Nucleic Acids. Res.
- insect cell-derived expression vector eg, “Bac-to-BAC baculovairus expression system” (manufactured by Gibco BRL), P BacPAK8), plant-derived expression vector (Eg, ⁇ 1, pMH2), an animal virus-derived expression vector (eg, pHSV, pMV, pAdexLcw), a retrovirus-derived expression vector (eg, pZIPneo), a yeast-derived expression vector (eg, “ Pichia Expression Kit "(manufactured by Invitrogen), pNVll, SP-Q01), and an expression vector derived from Bacillus subtilis (eg, pPL608, pKTH50).
- Bacillus subtilis eg, pPL608, pKTH50.
- promoters required for expression in cells for example, SV40 promoter (Mulligan et al., Nature (1979) 277, 108), MMLV-LTR promoter, EFla promoter, Ichiichi (Mizushima et al., Nucleic Acids Res. (1990) 18, 5322), CMV promoter, etc. It is more preferable to have a gene for selecting transformation (for example, a drug resistance gene that can be identified by a drug (neomycin, G418, etc.)).
- a gene for selecting transformation for example, a drug resistance gene that can be identified by a drug (neomycin, G418, etc.
- Examples of the vector to have a such property for example, P MAM, pDR2, pBK- RSV, pBK_CMV, pOPRSV, pOP13 , and the like.
- a vector having a DHFR gene that complements the nucleic acid synthesis pathway-deficient CHO cells is used.
- pCHOI a vector having a DHFR gene that complements the nucleic acid synthesis pathway-deficient CHO cells
- MTX methotrexate
- COS cells having a gene expressing the SV40 T antigen on the chromosome are transformed with a vector having a replication origin of SV40 (such as pcD).
- a replication origin those derived from poliovirus, adenovirus, ⁇ papilloma virus (BPV) and the like can also be used.
- the expression vector should be selected in order to amplify the number of copies of the gene in the host cell system, such as aminoglycoside transferase (APH) gene, thymidine kinase (TK) gene, and Escherichia coli xanthinguanine phospholiposyltransferase. (Ecogpt) gene, dihydrofolate reductase (dhfr) gene and the like.
- APH aminoglycoside transferase
- TK thymidine kinase
- Escherichia coli xanthinguanine phospholiposyltransferase Escherichia coli xanthinguanine phospholiposyltransferase.
- Escherichia coli xanthinguanine phospholiposyltransferase Escherichia coli xanthinguanine phospholiposyltransferase.
- the present invention also provides a host cell into which the vector of the present invention has been introduced.
- the host cell into which the vector of the present invention is introduced is not particularly limited, and for example, Escherichia coli and various animal cells can be used.
- the host cell of the present invention can be used, for example, as a production system for producing and expressing the protein of the present invention.
- Production systems for protein production include in vitro and in vivo production systems. Examples of the in vitro production system include a production system using eukaryotic cells and a production system using prokaryotic cells. '
- animal cells for example, animal cells, plant cells, and fungal cells can be used as hosts.
- animal cells include mammalian cells, for example, CHO (J. Exp. Med. (1995) 108, 945), COS, 3T3, Kazuma Mie, BHK (baby hamster kidney), HeLa, Vero, amphibian cells, for example. African omega oocyte
- CHO cells in particular, DHFR-deficient CHO cells such as dhfr-CHO (Proc. Natl. Acad. Sci. USA (1980) 77, 4216-4220) and CHO Kl (Proc. Natl. Acad. Sci. USA (1968) 60, 1275) can be preferably used.
- CHO cells are particularly preferred for large-scale expression in animal cells.
- Vector vectors can be introduced into host cells by, for example, the calcium phosphate method, the DEAE dextran method, the method using catonic ribosome DOTAP (manufactured by Berlin-Germanheim), the electroporation method, It can be performed by a method such as ribofection.
- a cell derived from Nicotiana tabacum is known as a protein production system, which may be callus cultured.
- Fungal cells include yeast, for example, the genus Saccharomyces, for example, Saccharomyces cerevisiae, filamentous fungi, for example, the genus Aspergillus, for example, Aspergillus niger niger (Aspergillus niger). Has been.
- E. coli Escherichia coli
- JM109 JM109
- DH5a> HB101 Bacillus subtilis
- the protein is obtained by transforming these cells with the desired DNA and culturing the transformed cells in vitro.
- Culture can be performed according to a known method.
- a culture solution of animal cells for example, DMEM, MEM, RPMI1640, IMDM can be used.
- fetal bovine serum for example, fetal bovine serum
- a serum replacement solution such as (FCS) may be used in combination, or serum-free culture may be performed.
- the pH during cultivation is preferably about 6-8.
- Culture is usually performed at about 30 to 40 C for about 15 to 200 hours, and the medium is replaced, aerated, and agitated as necessary.
- examples of a system for producing a protein in vivo include a production system using animals and a production system using plants.
- the target DNA is introduced into these animals or plants, and proteins are produced and recovered in the animals or plants.
- the “host” in the present invention includes these animals and plants.
- mice When using animals, there are production systems using mammals and insects. As mammals, goats, bushes, hidges, mice and mice can be used (Vicki).
- the target DNA is prepared as a fusion gene with a gene encoding a protein that is specifically produced in milk, such as goat / 3 casein.
- a DNA fragment containing the fusion gene is injected into a goat embryo, and the embryo is transplanted into a female goat.
- the target protein can be obtained from milk produced by the transgenic goat born from the goat that has received the embryo or its offspring. Hormones may be used in transgenic animals as appropriate to increase the amount of milk containing proteins produced by transgenic animals (Ebert, KM. Et al, Bio / Technology (1994) 12, 699-702).
- silkworms can be used as insects, for example.
- a place to use silkworms the target protein can be obtained from the body fluid of the silkworm by infecting the silkworm with a baculovirus containing DNA encoding the target protein (Susumu, M. et al., Nature (1985). ) 315, 592-594).
- tobacco when using a plant, for example, tobacco can be used.
- DNA encoding the protein of interest is introduced into a plant expression vector, such as PMON 530, and the vector is used, such as Agrobacterium tmnefaciens. Introduce the bacteria.
- This bacteria is infected with tobacco, for example, Nicotiana tabacum, and the desired protein can be obtained from the leaves of this tobacco (Julian K.-C. Ma et al., Eur. J. Immunol. (1994) 24, 131-138).
- the protein of the present invention thus obtained can be isolated from the inside or outside of the host cell (such as a medium) and purified as a substantially pure and homogeneous protein.
- the separation and purification of the protein may be performed by using the separation and purification methods used in ordinary protein purification, and is not limited in any way.
- Chromatographic column, Filfil, ultrafiltration, salting out, solvent precipitation, solvent extraction, distillation, immunoprecipitation, SDS-polyacrylamide gel electrophoresis, isoelectric focusing, electrophoresis, dialysis, recrystallization Proteins can be separated and purified by appropriately selecting and combining them.
- the chromatography include affinity chromatography, ion exchange chromatography, hydrophobic chromatography, gel filtration, reverse phase chromatography, P-phase chromatography, and the like (Strategies for chromatography).
- the protein before or after purification of the protein, the protein can be arbitrarily modified or partially removed by the action of an appropriate protein modification enzyme.
- the protein modifying enzyme for example, trypsin, chymotrypsin, lysyl peptidase, protein kinase, dalcosidase and the like are used.
- the cancer-related residue shown in SEQ ID NO: 116 PCR primers are designed based on the gene sequence of the gene (see Table 1), and quantification of the expression level of cancer-related genes in human tissues by quantitative PCR using cDNA obtained from human normal and cancer tissues. As a result, it was found that the expression of the cancer-related gene of the present invention was enhanced in specific human cancer tissues.
- Genes having the nucleotide sequences set forth in SEQ ID NOs: 1, 2, 28, 29, 30, 31, 32, 51, 52, 60, and 61 have been found to be upregulated in lung cancer.
- the protein encoded by the gene having the nucleotide sequence described in SEQ ID NO: 1, 2, 28, 29, 30, 31, 32, 51, 52, 60 and 61 or a fragment thereof can be used for diagnosis of lung cancer or Useful in therapy.
- the political gene has the nucleotide sequence set forth in any of SEQ ID NOs: 1, 2, 28, 29, 30, 31, 31 and 32, and more preferably the nucleotide sequence set forth in SEQ ID NOs: 1 or 2. .
- the protein encoded by the gene having the nucleotide sequence set forth in 38, 39, 40, 41, 42, 53, 54 and 55 or a fragment thereof is useful in the diagnosis or treatment of gastric cancer.
- the gene has a nucleotide sequence as set forth in any one of SEQ ID NOs: 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 22, 23, 24, 25 and 26. Having.
- Genes having the nucleotide sequences set forth in SEQ ID NOs: 3, 7, 20, 21, 46, 47, 48, 49 and 50 were found to be upregulated in colorectal cancer. That is, the protein encoded by the gene having the nucleotide sequence set forth in SEQ ID NOs: 3, 7, 20, 21, 46, 47, 48, 49 and 50 or a fragment thereof is useful in the diagnosis or treatment of colorectal cancer. is there.
- the gene has a nucleotide sequence as set forth in any of SEQ ID NOs: 3, 7, 20, 21, 46, 49 and 50, more preferably any of the nucleotide sequences set forth in SEQ ID NOs: 3, 7, 20, 20 and 21 Has the nucleotide sequence described.
- the gene having the nucleotide sequence set forth in SEQ ID NOs: 14, 15, 16, 17, 18, 19, 43, 44, 45, 56, 57, 58, 59, 62, 63, 64, and 65 has The expression was found to be upregulated. That is, by the gene having the nucleotide sequence described in SEQ ID NO: 14, 15, 16, 17, 18, 19, 43, 44, 45, 56, 57, 58, 59, 62, 63, 64 and 65
- the encoded protein or fragment thereof is useful in diagnosing or treating liver cancer.
- the gene is a nucleotide sequence described in any of SEQ ID NOs: 14, 15, 16, 17, 18, 19, 45, 56, 57, 58, 64 and 65, more preferably SEQ ID NO: 14 , 15, 16, 17, 18, 19, 64 and 65.
- composition of the present invention containing the protein encoded by the cancer-related gene described in SEQ ID NOs: 1 to 65 or a fragment thereof can be used as a vaccine against cancer.
- the human or animal is administered.
- the composition of the present invention may be administered in the form of cells expressing the above-mentioned cancer-related gene or a fragment thereof.
- composition of the present invention determines whether a subject has a specific cancer by measuring whether or not the subject has an antibody against a protein encoded by the cancer-associated gene described in SEQ ID NOS: 1-65. It can be used to diagnose whether or not it is. ⁇ body
- the present invention provides an antibody or an antigen-binding fragment thereof that recognizes a protein or a fragment thereof encoded by a cancer-related gene having a nucleotide sequence set forth in any of SEQ ID NOS: 1-65. I do.
- a composition for diagnosing or treating cancer comprising the antibody or the binding fragment thereof.
- the antibody of the present invention can preferably recognize a protein having an amino acid sequence represented by SEQ ID NOs: 66 to 123 or a fragment thereof.
- the present invention also provides a cell that produces such an antibody.
- Recognition means that an antibody binds under specific conditions to a protein or fragment thereof encoded by the above-mentioned cancer-associated gene with a higher affinity for binding to another polypeptide. Means
- Antibodies of the present invention include monoclonal and polyclonal antibodies, as well as antibody variants and derivatives, such as antibodies and T-cell receptor fragments that retain the ability to specifically bind antigenic determinants. It is.
- the body type of the present invention is not particularly limited, and may be a mouse antibody, a human antibody, a rat antibody, a heron antibody, a hidge antibody, a camel antibody, etc.
- a genetically modified recombinant antibody for example, a chimeric antibody, a humanized antibody, or the like can be used as appropriate.
- Recombinant antibodies can be produced using known methods.
- a chimeric antibody is an antibody consisting of a heavy chain and light chain variable region of a non-human mammal, such as a mouse antibody, and a heavy chain and light chain constant region of a human antibody, and DNA encoding the mouse antibody variable region. Can be obtained by ligating this to DNA encoding the constant region of a human antibody, inserting this into an expression vector, and introducing it into a host to produce it.
- Humanized antibodies are reconstituted
- a complementarity determining region (CDR) of a non-human mammal such as a mouse antibody
- CDR complementarity determining region
- Recombinant techniques are also known. Specifically, a DNA sequence designed to link the CDR of a mouse antibody and the framework region (FR) of a human antibody was prepared by preparing several DNA fragments having overlapping portions at the ends. It is synthesized by PCR from oligonucleotides. The obtained DNA is ligated to DNA encoding the constant region of a human antibody, then inserted into an expression vector, and introduced into a host to produce it (European Patent Application Publication No.
- EP 239400 International Patent Application Publication Number WO 96/02576
- the human antibody FR linked via CDR is selected so that the complementarity-determining region forms a favorable antigen-binding site. If necessary, amino acids in the framework region of the antibody variable region may be substituted so that the complementarity determining region of the reshaped human antibody forms an appropriate antigen-binding site (Sato, et al., Cancer Res. : 1993, 53, 851-856.).
- a method for obtaining a human antibody is known.
- human lymphocytes are sensitized in vitro with a desired antigen or cells expressing the desired antigen, and the sensitized lymphocytes
- the desired human antibody having an antigen-binding activity can be obtained by fusing it with an erotic cell, for example, U266 (see Japanese Patent Publication No. 1-59878).
- a desired human antibody can be obtained by immunizing a transgenic animal having the entire repertoire of human antibody genes with a desired antigen (International Patent Application Publication No. WO
- a technique for obtaining a human antibody by panning using a human antibody library is also known.
- a phage that binds to an antigen can be selected by expressing the variable region of a human antibody as a single-chain antibody (scFv) on the surface of a phage by the phage display method.
- scFv single-chain antibody
- a human antibody can be obtained by preparing an appropriate expression vector for the sequence.
- These methods are already well known and can be referred to WO 92/01047, WO 92/20791, WO 93/06213, WO 93/11236, WO 93/19172, WO 95/01438, WO 95/15388. it can.
- the antibody may be a low-molecular-weight antibody such as an antibody fragment (fragment) or a modified product of the antibody, as long as the antibody can bind to the antigen.
- Specific examples of the antibody fragment include Fab, Fab ', F (ab,) 2, Fv, and Diabody.
- a gene encoding these antibody fragments may be constructed, introduced into an expression vector, and then expressed in a suitable host cell (eg, Co, MS et al.). ., J. Immunol. (1994) 152, 2968-2976; Better, M. and Horwitz, AH, Methods Enzymol. (1989) 178, 476-496; Plckthun, A. and Skerra, A., Methods Enzymol. (1989) 178, 497-515; Lamoyi, E., Methods Enzymol.
- an antibody bound to various molecules such as polyethylene glycol (PEG) can be used. It is also possible to bind a radioactive isotope, a chemotherapeutic agent, a cytotoxic substance such as a bacterial toxin, etc. to the antibody, and a radiolabeled antibody is particularly useful.
- PEG polyethylene glycol
- an antibody having a modified sugar chain can be used.
- Antibody sugar chain modification technology is already known
- the present invention also includes multispecific antibodies having specificity for two or more different antigens. Usually such molecules bind two antigens (i.e., bispecific body), but a "multispecific antibody" in the present invention is more specific (e.g., three types) of antigens. Includes antibodies that have specificity for.
- a multispecific antibody can be a full-length antibody, or a fragment of such an antibody (eg, an F (ab ') 2 bispecific antibody).
- the constant domain sequence preferably includes at least part of the hinge, CH2 and CH3 regions of the constant region of the heavy chain of immunoglobulin.
- a heavy chain CH1 region required for binding to the light chain is further included.
- the DNA encoding the immunoglobulin heavy chain fusion and, if desired, the DNA encoding the immunoglobulin light chain are inserted into separate expression vectors, and transformed into an appropriate host organism. By inserting each gene into a separate expression vector, if the abundance ratio of each chain is not the same, the yield of the obtained antibody can be increased, and the expression ratio of each chain can be adjusted, which is convenient. However, it goes without saying that genes encoding a plurality of chains can be inserted into one vector and used.
- a heavy chain having a first binding property is present as one arm of an octibride immunoglobulin and a heavy-light chain complex of another binding property is present as the other arm.
- Specific antibodies are preferred.
- the presence of the light chain in only one arm allows the bispecific antibody to separate from other immunoglobulins. It can be done easily. See WO94 / 04690 for the separation method.
- For the method of preparing a bispecific antibody see the method of Suresh et al. (Methods in Enzymology 121: 210 (1986)).
- One way to reduce homodimers and increase the proportion of heterodimers in the final product obtained from recombinant cell culture is to include the antibody constant domain, CH3, in one antibody molecule to bind to the other molecule.
- several small side chain amino acids are changed to larger side chain amino acids (eg, tyrosine or tributophan), and the corresponding portion of the other antibody molecule is replaced with a smaller side chain amino acid (eg, alanine ⁇ threonine).
- a method of providing a cavity corresponding to the large side chain of the first antibody molecule is known (WO96 / 27011).
- Bispecific antibodies include, for example, heteroconjugate antibodies in which one antibody is bound to avidin and the other is bound to piotin or the like (U.S. Pat.No. 4,676,980; WO91 / 00360; WO92 / 00373; EP03089).
- Cross-linking agents used to make such heteroconjugate antibodies are well known, and such examples are described, for example, in US Pat. No. 4,676,980.
- a method for producing a bispecific antibody from an antibody fragment has been reported.
- it can be manufactured using a chemical bond.
- an F (ab ') 2 fragment is first prepared, and the fragment is reduced in the presence of the dithiol complexing agent arsanyl sodium in order to prevent disulfide formation in the same molecule.
- the F (ab ') 2 fragment is converted to a thionite oral benzoate (TNB) derivative.
- TAB thionite oral benzoate
- VH heavy chain variable domain
- VL light chain variable domain
- the “antibody” in the present invention also includes these antibodies.
- the antibodies and antibody fragments of the present invention can be produced by any appropriate method, for example, in vivo, cultured cells, in vitro translation reaction, and a recombinant DNA expression system.
- immunization can be performed by subcutaneously or intraperitoneally injecting any animal known to produce antibodies (mouse, egret, etc.). can do.
- Adjuvants may be used for immunization, and such adjuvants are well known in the art.
- Polyclonal antibodies can be obtained by isolating antisera containing the antibody from the immunized animal and using a well-known method in the art, such as ELISA assay, Western blot analysis, or radioimmunoassay, to obtain the desired specificity. It can be obtained by screening for the presence of an antibody having
- Monoclonal antibodies can be obtained by excising the spleen cells from the immunized animal and fusing the spleen cells with myeoma cells to produce hybridoma cells that produce monoclonal antibodies.
- Hybridoma cells producing an antibody recognizing the desired protein or a fragment thereof can be obtained by using a well-known method in the art such as ELISA, Western blot analysis, or radioimmunoassay. select.
- a hybridoma that secretes the desired antibody is cloned, cultured under appropriate conditions, and the secreted antibody is recovered. Purification can be performed using a well-known method, for example, an ion exchange column, affinity chromatography and the like.
- a humanized monoclonal antibody may be produced using a xenomouse strain (Green, J. Immunol. Methods 231: 11-23, 1999; We11s, Eek, ChemB). io 1 2000 Aug; 7 (8): see R185-6).
- DNA encoding a monoclonal antibody can be readily isolated by conventional methods (e.g., using an oligonucleotide probe that can specifically bind to the genes encoding the heavy and light chains of the monoclonal antibody). Can be sequenced. VIII Hybrid cells are a preferred starting material for such DNA.
- the DNA is inserted into an expression vector, and host cells such as E. coli cells, monkey COS cells, Chinese worm ovary (CHO) cells, or myeloma cells that do not produce immunoglobulins unless transformed.
- host cells such as E. coli cells, monkey COS cells, Chinese worm ovary (CHO) cells, or myeloma cells that do not produce immunoglobulins unless transformed.
- host cells such as E. coli cells, monkey COS cells, Chinese worm ovary (CHO) cells, or myeloma cells that do not produce immunoglobulins unless transformed.
- antibodies or antibody fragments can be isolated from antibody phage libraries produced
- Labels include radioactive isotopes, affinity labels (eg, biotin, avidin, etc.), enzyme labels (eg, horseradish peroxidase, alkaline phosphatase, etc.), fluorescent labels (eg, FITC or And a paramagnetic atom. Methods for performing such labeling are well-known in the art.
- the above-mentioned antibodies may be immobilized on a solid support. Examples of such solid supports include plastic, agarose, sepharose, polyacrylamide, latex beads, and the like. Techniques for attaching antibodies to such solid supports are well known in the art.
- the cancer-associated gene of the present invention exhibits enhanced expression in specific cancer tissues, and thus the antibody of the present invention is useful as a cancer diagnostic marker.
- the antibody of the present invention can be used in techniques such as Western blotting, ELISA, and tissue staining to detect the expression of a protein encoded by a cancer-related gene in a tissue or cell.
- a sample derived from a subject's tissue eg, a biopsy sample, a blood sample, etc.
- the composition of the present invention is brought into contact with the composition of the present invention under conditions such that an immune complex is formed, and whether the antibody binds to the sample is determined.
- the diagnostic composition of the present invention can be provided as a kit for detecting the presence of a protein encoded by the above-mentioned cancer-related gene in a sample.
- kits may include, in addition to the antibodies described above, a washing reagent and a reagent capable of detecting the presence of bound antibody, such as a labeled second antibody, a chromophore capable of reacting with the labeled antibody, an enzyme, or It can include antibody binding reagents, as well as guidelines for use.
- the antibody against the protein encoded by the cancer-related gene of the present invention has specificity for a specific cancer cell, and thus is used as a therapeutic agent for cancer or in missile therapy in which the drug is specifically targeted to cancer tissue. be able to.
- the composition of the present invention is used in the diagnosis and treatment of lung cancer, stomach cancer, colon cancer and liver cancer.
- the therapeutic agent of the present invention can be formulated by mixing, dissolving, granulating, tableting, emulsifying, encapsulating, freeze-drying, etc., together with a pharmaceutically acceptable carrier well known in the art. it can.
- the therapeutic agent of the present invention may be used together with pharmaceutically acceptable solvents, excipients, binders, stabilizers, dispersants, and the like, together with tablets, pills, dragees, soft capsules, and hard capsules. It can be formulated into dosage forms such as solutions, suspensions, emulsions, gels, syrups and slurries.
- the therapeutic agent of the present invention may be used together with a pharmaceutically acceptable solvent, excipient, binder, stabilizer, dispersant, etc., together with an injection solution, suspension, emulsion, or cream.
- a pharmaceutically acceptable solvent such as water, Ringer's solution, or physiological saline buffer.
- the compositions can take such forms as suspensions, solutions, or emulsions in oily or aqueous vehicles.
- the therapeutic agent may be manufactured in powder form, and an aqueous solution or suspension may be prepared using sterile water or the like before use.
- the therapeutic agents of the invention can be powdered and made into a powder mixture with a suitable base, such as lactose or starch.
- Suppository formulations can be made by mixing the therapeutic agents of the present invention with conventional suppository bases such as cocoa butter.
- the therapeutic agent of the present invention can be encapsulated in a polymer matrix or the like and treated as a sustained-release preparation.
- the dosage and frequency of administration will vary depending on the dosage form and route of administration, and the condition, age, and weight of the patient, but in general, the therapeutic agents of the present invention will range from about 0.001 mg / kg of body weight per day. It may be administered once to several times daily in a range of 100 mg, preferably about 0.1 mg.
- Therapeutic agents are usually administered by parenteral administration route, for example, injection (subcutaneous injection, intravenous injection, intramuscular injection, intraperitoneal injection, etc.), transdermal, transmucosal, nasal, pulmonary, etc. Alternatively, oral administration may be used.
- parenteral administration route for example, injection (subcutaneous injection, intravenous injection, intramuscular injection, intraperitoneal injection, etc.), transdermal, transmucosal, nasal, pulmonary, etc.
- oral administration may be used.
- the present invention relates to a polynucleotide having the nucleotide sequence set forth in any one of SEQ ID NOs: 1 to 65 or a polynucleotide having a nucleotide sequence complementary thereto, or a condition in which these polynucleotides are highly stringent.
- polynucleotides that can be hybridized below.
- the present invention relates to a polynucleotide having at least 12 consecutive nucleotide sequences of the nucleotide sequence described in any of SEQ ID NO: 116 or a nucleotide sequence complementary thereto, or A composition comprising an oligonucleotide having a length of at least 12 nucleotides capable of hybridizing under high stringency conditions to a polynucleotide having the nucleotide sequence of any of Nos. 1 to 65. .
- polynucleotides are useful for cancer diagnosis, protein production, primers, antisense siRNA for inhibiting gene expression, and the like.
- the cancer is preferably selected from lung, stomach, colon and liver cancer.
- composition of the present invention can be used as an agent such as an antisense oligonucleotide for silencing the expression of a related gene, a lipozyme, siRNA or the like, and a probe or primer for detecting a cancer-related gene.
- an agent such as an antisense oligonucleotide for silencing the expression of a related gene, a lipozyme, siRNA or the like, and a probe or primer for detecting a cancer-related gene.
- Polynucleotides or oligonucleotides contained in the composition of the present invention include: It may be single-stranded or double-stranded, and may be DNA, RNA, or a mixture thereof, or a derivative such as PNA. These polynucleotides or oligonucleotides may be chemically modified at internucleoside linkages, bases and Z or sugars, and may have modifying groups at the 5, terminal and Z or 3 'terminal. Examples of the modification of the internucleoside bond include phosphorothioate, phosphorodithioate, phosphoramidate, phosphoramidate, phosphordiamidate, methylphosphonate, alkyl phosphotriester, and formacetal.
- Examples of base modifications include 5-fluorouracil, 5-bromouracil, 5-chlorouracil, 5-, o-douracil, hypoxanthine, xanthine, 4-acetylcytosine, and 5- (potoxyhydroxyethyl). ⁇ Rasil and the like.
- Examples of sugar modifications include 2,1-alkyl, 2, -O-alkyl-O-alkyl or 2,1-fluoro modifications. Also, sugars such as arabinose, 2-fluoroarabinose, xylulose and hexose may be used.
- the polynucleotide of the present invention may be a polynucleotide having the nucleotide sequence set forth in any of SEQ ID NOs: 1-65 or a nucleotide sequence complementary to a fin, or a condition under which these polynucleotides are highly stringent. Is a polynucleotide that can be hybridized. Polynucleotides that can be hybridized under high stringency conditions usually have a high degree of identity.
- the high identity means that the nucleotide sequence has 70% or more identity, preferably 80% or more identity, and more preferably the nucleotide sequence described in any of SEQ ID NOS: 1 to 65. Means 90% or more identity.
- the present invention encodes the amino acid sequence of SEQ ID NO: 66-123.
- composition of the present invention may be provided as a nucleic acid construct capable of producing desired antisense, lipozyme, and siRNA in cells into which the composition has been introduced.
- the polynucleotide or oligonucleotide of the present invention is used as an antisense, liposome, siRNA, or the like, the polynucleotide or oligonucleotide preferably has a chain length of at least 12 nucleotides or more, and more preferably. Is 12 to 50 nucleotides, particularly preferably 12 to 25 nucleotides.
- polynucleotides or oligonucleotides are mutants in which one or several bases are deleted, substituted or added from the above-mentioned nucleotide sequence, as long as they have the desired antisense, lipozyme or siRNA activity. You may.
- Such variants preferably have a nucleotide sequence that is at least 70%, preferably 90% or more, more preferably 95% or more, identical to the nucleotide sequence described above.
- such polynucleotides or oligonucleotides can hybridize under high stringency conditions to a polynucleotide having the nucleotide sequence set forth in any of SEQ ID NOs: 1-65.
- hybridization means that DNA or the corresponding RNA binds to another DNA or RNA molecule in a solution or on a solid support by hydrogen bonding interactions.
- the strength of such an interaction can be evaluated by changing the stringency of the hybridization conditions.
- various stringency hybridization conditions can be used, and the stringency can be adjusted by varying the salt or denaturant concentration.
- Such methods of regulating stringency are well known in the art and are described, for example, in "Mocular C 1 oning: AL abo rato ry Manual", Second Edition. Cold Spring Harbor Labo. ratory, S amb ro ok, Frits ch, & M aniatis r ed s., 1 9 89).
- Stringent hybridization conditions are those conditions in the presence of 50% formamide in 700 mM NaCl at 42 ° C or equivalent.
- An example of the scan stringent Haiburidize one Deployment conditions 50% formamide, 5XSSC, 50mMNaH 2 PO 4, pH6. 8, 0. 5% SDS, 0. lm g / mL sonicated salmon sperm DNA, and 5 X Denhardt's Hybridization overnight at 42 ° C in solution; 2XSSC, 0.1% SDS wash at 45 ° C; and 0.2XSSC, 0.1% SDS wash at 45 ° C.
- the polynucleotide and the oligonucleotide of the present invention can be produced by a method known to those skilled in the art. For example, it can be synthesized with a commercially available DNA synthesizer (for example, 394 synthesizer, manufactured by Applied Biosystems) using a protocol known in the art. Alternatively, based on the sequence information disclosed herein, it can be produced by a PCR amplification technique well known in the art, using a combination of an appropriate template and a primer.
- a DNA synthesizer for example, 394 synthesizer, manufactured by Applied Biosystems
- cDNA library can be prepared by preparing a cDNA library from cells expressing the polypeptide of the present invention, and performing hybridization using a part of the sequence of the polynucleotide of the present invention as a probe.
- the cDNA library can be obtained from, for example, Bunnan Dog (Sambrook, J. et al., Molecular Clomng, Cold Spring Harbor
- UNA is prepared from cells expressing the polypeptide of the present invention, cDNA is synthesized using reverse transcriptase, and then oligo DNA is synthesized based on the sequence of the DNA of the present invention (for example, SEQ ID NO: 1). However, it can also be prepared by performing a PCR reaction using this as a primer and amplifying a cDNA encoding the polypeptide of the present invention.
- Genomic DNA can also be isolated by screening a genomic DNA library using the obtained cDNA as a probe.
- mRNA is isolated from cells or tissues that express the protein of the present invention (for example, lung cancer cells, colon cancer cells, liver cancer cells, and gastric cancer cells).
- mRNA can be isolated by known methods, for example, guanidine ultracentrifugation (Chirgwin, JM et al., Biochemistry (1979) 18, 5294-5299), and the AGPC method (Chomczynski, P. and Sacchi, N., Anal. Prepare whole UNA using Biochem. (1987) 162, 156-159) and purify mRNA from total RNA using mRNA Purification Kit (Pharmacia).
- mRNA can be directly prepared by using the QuickPrep mRNA Purification Kit (Pharmacia).
- CDNA is synthesized from the obtained mRNA using reverse transcriptase.
- the cDNA can also be synthesized using AMV Reverse Transcriptase First-strand cDNA Synthesis Kit (manufactured by Iidaigaku Kogyo). Also, 5'-Ampli FINDER RACE Kit
- the target DNA fragment from the obtained PCR product and ligate it with the vector DNA. Further, a recombinant vector is prepared from this, introduced into E. coli, etc., and colonies are selected to prepare a desired recombinant vector.
- the nucleotide sequence of the target DNA can be confirmed by a known method, for example, the dideoxynucleotide chain-one-minute method.
- a nucleotide sequence with higher expression efficiency can be designed in consideration of the codon usage of the host used for expression (Grantham, R. et al., Nucelic Acids Research ( 1981) 9, r43-74).
- the DNA of the present invention can be modified by a commercially available kit or a known method. Modifications include, for example, digestion with restriction enzymes, insertion of synthetic oligonucleotides or appropriate DNA fragments, addition of a linker, initiation codon (ATG) and Z or stop codon.
- TAA TGA, TGA, or TAG
- the oligonucleotide of the present invention can be used as a nucleic acid probe for detecting a cancer-related gene in a sample.
- the probe of the present invention has a sequence of at least 12 bases, 20 bases, 30 bases, 50 bases or 100 bases or more of the base sequence represented by SEQ ID NO: 165 or a base sequence complementary thereto. And selected to specifically hybridize to a specific region of a cancer-related gene. Extract DNA from tissues, blood, etc., or extract mRNA and combine cDNA By contacting the probe with the probe under conditions that would result in hybridization, and detecting the presence or amount of the probe bound to the sample to detect the presence of the cancer-related gene or its transcript in the sample. Or the amount or mutation can be detected.
- the probe may be immobilized on a solid support.
- solid supports include, but are not limited to, plastic, agarose, sepharose, polyacrylamide, latex beads, nitrocellulose, and the like. Techniques for attaching probes to such solid supports are well known in the art. Probes should be visualized by labeling using standard labeling techniques, for example, radiolabeling, enzyme labeling (horseradish peroxidase, alkaline phosphatase), fluorescent labeling, biotin-avidin labeling, chemiluminescence, etc. Can be. That is, the composition of the present invention can be provided as a kit for detecting the presence of a cancer-related gene or a transcription product thereof in a sample. Such kits can include, in addition to the probe described above, a washing reagent, a reagent capable of detecting the presence of bound probe, and guidelines for use.
- the 'diagnostic composition' of the present invention may comprise a set of primers capable of amplifying the nucleotide sequence set forth in any of SEQ ID NOs: 1-65.
- primers capable of amplifying the nucleotide sequence set forth in any of SEQ ID NOs: 1-65.
- PCR polymerase chain reaction
- a technique such as hybridization or nucleotide sequencing, and The presence or amount or mutation of the cancer-related gene or its transcript therein can be detected.
- PCR techniques are well known in the art and are described, for example, in "PGR Protocols, A Guide to Methods and Applications on s' ⁇ Acdc e mic Press, Michael". , et al., eds. 1990.
- the oligonucleotide of the present invention is preferably a nucleotide sequence represented by any one of SEQ ID NOs: 1 to 65 or a sequence complementary thereto. It has a sequence of at least 12 bases, preferably 12 to 50 bases, more preferably 12 to 20 bases in a continuous base sequence.
- the polynucleotide or oligonucleotide of the present invention is an antisense molecule that binds to mRNA encoded by a cancer-related gene and inhibits its expression, or m It can be used as a ribozyme or siRNA that cleaves RNA to silence cancer-related genes.
- Methods for controlling gene expression using antisense, lipozyme, and siRNA technologies are well known in the art.
- the compositions of the invention may be administered with a suitable carrier, or the expression of these may be induced in vivo by administration of a vector encoding antisense, lipozyme or siRNA.
- lipozyme refers to a nucleic acid molecule that has the catalytic activity of cleaving mRNA. Liposomes generally exhibit endonuclease, ligase or polymerase activity. Various types of trans-acting liposomes are known, such as the mmermar head and hairpin type liposomes.
- Antisense refers to a nucleic acid molecule or derivative thereof that specifically hybridizes to genomic DNA and / or mRNA and inhibits its protein expression by inhibiting its transcription and Z or translation. Binding may be by general base pair complementarity or, for example, in the case of binding to a DNA duplex, by specific interaction in the major groove of the double helix.
- the target site of the antisense nucleic acid is preferably the 5 'end of the mRNA, for example, the 5' untranslated sequence up to and including the AUG start codon, but the 3, untranslated sequence of the mRNA or the sequence of the coding region is also preferred for translation of the mRNA. It is known to be effective for inhibition.
- siRNA refers to a double-stranded nucleic acid capable of performing RNA interference (RNA i) (for example, Basss, 2001, Nature, 411, 428-429; E 1 bashiretal., 2001, Na). ture, 411, 494-498). siRNA degrades mRNA in a sequence-specific manner, which can suppress gene expression.
- the siRNA is typically a 20-25 base pair long double stranded RNA containing a sequence complementary to the target sequence.
- the si RNA molecules may contain chemically modified nucleotides and non-nucleotides.
- the polynucleotide of the present invention can be used for producing the protein of the present invention.
- screening provides a method for identifying a compound having anti-cancer activity. The method comprises contacting cultured human cells with a test compound, and eliciting a compound that causes a change in the expression level of a gene comprising a nucleotide sequence set forth in any one of SEQ ID NOs: 1-65 in said cells. And identifying the compound as
- test compound any natural or synthetic compound can be used, and a combinatorial library may be used.
- the expression level of the cancer-related gene in the cell can be easily measured, for example, by the above-described quantitative PCR method, but any other method known in the art may be used. Inspection methods
- the present invention provides a method for detecting cancer, comprising a step of measuring the expression level of the gene or protein of the present invention. Specific embodiments of the inspection method are described below, but the inspection method of the present invention is not limited to those methods.
- an NA sample is prepared from a subject.
- the amount of RNA encoding the protein of the present invention contained in the RNA sample is measured.
- the amount of RNA is compared to a control.
- a cDNA sample is prepared from a subject.
- the amount of cDNA encoding the protein of the present invention contained in the cDNA sample is measured.
- the measured amount of cDNA is then compared to a control.
- Examples of such methods include methods well known to those skilled in the art, such as Northern blotting, RPCR, and DNA array.
- a cDNA sample is prepared by using RNA prepared from a subject as a type II, and brought into contact with a substrate on which the oligonucleotide of the present invention is immobilized, and the cDNA sample and a nucleotide probe immobilized on the substrate are used.
- the expression level of the gene of the present invention contained in the cDNA sample is measured.
- the measured expression level of the gene of the present invention is compared with a control.
- Preparation of a cDNA sample from a subject can be performed by methods well known to those skilled in the art.
- total RNA is extracted from cells or tissues (eg, lung, large intestine, stomach, liver, etc.) of a subject.
- the extraction of total RNA can be performed by a method well known to those skilled in the art, for example, as follows.
- existing methods and kits can be used as long as high-purity total RNA can be prepared.
- total RNA is extracted using “Isogen” from Futaba Gene. The specific method may be in accordance with those attached protocols.
- cDNA is synthesized using reverse transcriptase with the extracted total RNA as type III to prepare a cDNA sample.
- Synthesis of cDNA from total RNA can be performed by methods known to those skilled in the art. Label the prepared cDNA sample for detection, if necessary.
- the labeling substance is not particularly limited as long as it is detectable, and examples thereof include a fluorescent substance and a radioactive element. Labeling can be performed by a method commonly used by those skilled in the art (L Luo et al., Gene expression profiles of laser-capture dadjacent neuronal subtypes. Nat Med. 1999, 117-122).
- the detection of the intensity of the hybridization between the nucleotide probe and the cDNA can be appropriately performed by those skilled in the art according to the type of the substance that has labeled the cDNA sample. For example, if the cDNA is labeled with a fluorescent substance, it can be detected by reading the fluorescent signal with a scanner.
- test method of the present invention first, a protein sample is prepared from cells or tissues of a subject. Next, the amount of the protein of the present invention contained in the protein sample is measured. The measured amount of protein is then compared to a control. Examples of such methods include SDS polyacrylamide electrophoresis, Western blotting, dot blotting, immunoprecipitation, enzyme-linked immunosorbent assay (ELISA) using the antibodies of the present invention, And immunofluorescence. Alternatively, cancer can be diagnosed by measuring the expression level of the protein of the present invention instead of measuring the expression level of the gene of the present invention.
- the subject when the expression level of the gene or protein of the present invention is significantly increased as compared to the control, the subject is likely to have, or is likely to develop, cancer. Is determined.
- the present invention also provides a test agent for use in a method for testing cancer.
- a test agent for use in a method for testing cancer.
- examples of such a test agent include a test agent containing the oligonucleotide of the present invention (including a substrate to which an oligonucleotide probe is immobilized) and a test agent containing the antibody of the present invention.
- the antibody is not particularly limited as long as it can be used for the test.
- Antibodies Labeled as needed.
- oligonucleotides and antibodies that are active ingredients for example, sterile water, physiological saline, vegetable oil, surfactants, lipids, solubilizers, buffers, protein stabilizers (such as BSA and gelatin) ), Preservatives and the like may be mixed as necessary.
- the present invention features detecting a C20orfl02 protein; providing a diagnostic method for @.
- the method of the present invention is characterized by detecting C20orfl02 protein.
- C20orfl02 is a secretory protein having a secretory signal at the N-terminus, and its amino acid sequence and the gene sequence and amino acid sequence encoding it are disclosed in GenBank No. NM_080607 (SEQ ID NOs: 2 and 66).
- the C20orfl02 protein is meant to include both the full-length protein and its fragments.
- the fragment is a polypeptide containing an arbitrary region of the C20orfl02 protein, and may not have the function of the natural C20orfl02 protein.
- the secretion signal of the C20orfl02 protein corresponds to the 1st to 24th amino acids in the amino acid sequence of SEQ ID NO: 66 (Psort prediction: http: ⁇ psort.nibb.ac.jp /).
- C20orfl02 is highly expressed at the protein level in cancer cells, particularly in lung cancer, liver cancer (eg, moderately differentiated liver cancer), and Teng cancer.
- immunohistodiagnosis was possible by using a monoclonal antibody specific to C20orfl02.
- the C20orfl02 protein detected by the present invention is preferably, but not limited to, human C20orfl02 protein, such as dog C20orfl02, cat C20orfl02, and mouse.
- C20orfl02 such as C20orfl02 and hamster C20orfl02 may be used.
- C20orfl02 detected in the present invention may be C20orfl02 before secretion, but is preferably C20orfl02 after secretion.
- C20orfl02 is a secretory protein that has a secretory signal at the N-terminus and is secreted extracellularly after being produced intracellularly.
- C20orfl02 after secretion refers to C20orfl02 existing extracellularly.
- detection includes quantitative or non-quantitative detection.
- non-quantitative detection includes simply measuring whether or not C20orfl02 protein is present, Measurement of whether or not C20orfl02 protein is present in a certain amount or more, and measurement of the amount of C20orfl02 protein compared with other samples (for example, control samples, etc.). Examples thereof include measurement of the concentration of C20orfl02 protein and measurement of the amount of C20orfl02 protein.
- test sample is not particularly limited as long as it is a sample that may contain the C20orfl02 protein, but is preferably a sample collected from the body of an organism such as a mammal, and more preferably a sample collected from a human.
- test samples include, for example, cells, cell lysates, blood, interstitial fluid, plasma, extravascular fluid, cerebrospinal fluid, synovial fluid, pleural fluid, serum, lymph, saliva, urine, etc. Preferred are blood, serum, or plasma.
- a sample obtained from a test sample such as a culture solution of cells collected from the body of an organism, is also included in the test sample of the present invention.
- the cancer to be diagnosed is not particularly limited and may be any cancer. Specifically, liver cancer, kidney cancer, lung cancer, colon cancer, breast cancer, kidney cancer, brain tumor, uterine cancer, lung cancer, stomach cancer, prostate cancer, leukemia And lymphoma. Preferred are lung cancer, liver cancer, and victory cancer.
- Liver cancer is classified into poorly differentiated hepatocarcinoma, moderately differentiated hepatocarcinoma, highly differentiated hepatocellular carcinoma, and the like.
- the detection according to the present invention may be any liver cancer, but detection of moderately differentiated liver cancer is preferred.
- Lung cancer is further classified into lung adenocarcinoma, lung squamous cell carcinoma, small cell lung cancer, large cell lung cancer, and the like.
- the detection according to the present invention may be any type of lung cancer, but the detection of lung adenocarcinoma is preferred.
- C20orfl02 protein when C20orfl02 protein is detected in a test sample, it is determined that the amount of C20orfl02 protein detected in the test sample is larger than that in a negative control or a healthy subject. It is determined that the subject has cancer or is highly likely to have cancer.
- a preferred embodiment of the diagnostic method of the present invention includes a diagnostic method characterized by detecting a C20orfl02 protein released from cells and present in blood. Particularly preferably, C20orfl02 protein or a fragment thereof present in blood is detected.
- the method for detecting the C20oi'fl02 protein contained in the test sample is not particularly limited, but is preferably detected by an immunological method using an anti-C20orfl02 antibody.
- the immunological method include, for example, radioimmunoassay, enzymatic immunoassay, fluorescent immunoassay, luminescent immunoassay, immunoprecipitation, immunoturbidimetry, and Wesmann Examples include immunoblotting, immunostaining, and immunodiffusion methods. Enzyme immunoassay is preferred, and enzyme-linked immunosorbent assay is particularly preferred.
- ELISA enzyme-liiiKed immunosorbent assay
- the C20orfl02 antibody was immobilized on the support, the test sample was added thereto, incubated, and the anti-C20orfl02 antibody and the C20orfl02 protein were allowed to bind, followed by washing, and the C20orfl02 antibody bound to the support via the anti-C20orfl02 antibody.
- a method for detecting C20orfl02 protein in a test sample by detecting the protein can be cited.
- Examples of the support used to immobilize the anti-C20orfl02 antibody in the present invention include, for example, agarose, insoluble polysaccharides such as cellulose, silicone resin, polystyrene resin, polyacrylamide resin, nylon resin, and polyacrylamide. Synthetic resins such as one-ponate resin and insoluble supports such as glass can be used. These supports can be used in the form of a bead plate or the like. In the case of beads, a column filled with these can be used. In the case of a plate, a multiwell plate (eg, a 96-well multiwell plate) or a biosensor chip can be used.
- the binding between the anti-C20orfl02 antibody and the support can be achieved by a commonly used method such as chemical bonding or physical adsorption. Commercially available supports can be used for all of these supports.
- the binding between the anti-C20orfl02 antibody and the C20orfl02 protein is usually performed in a buffer.
- a buffer for example, a phosphate buffer, a Tds buffer, a citrate buffer, a borate buffer, a carbonate buffer, and the like are used.
- Incubation conditions include conditions that are already used, for example, incubation at 4 to room temperature for 1 to 24 hours. Washing after the incubation is not particularly limited as long as it does not prevent the binding between the C20orfl02 protein and the anti-C20orfl02 antibody.
- a buffer containing a surfactant such as Tween20 is used.
- a control sample may be provided in addition to the test sample from which C20orfl02 protein is to be detected.
- Control samples include negative control samples without C20orfl02 protein and There is a positive control sample containing C20orfl02 protein. In this case, the results obtained with the negative control sample without C20orfl02 protein,
- a preferred embodiment of detection of C20orfl02 protein bound to the support via the anti-C20orfl02 antibody includes a method using an anti-C20orfl02 antibody labeled with a labeling substance. For example, a test sample is brought into contact with an anti-C20orfl02 antibody immobilized on a support, washed, and then detected using a labeled antibody that specifically recognizes the C20orfl02 protein.
- Labeling of the anti-C20orfl02 antibody can be performed by a generally known method.
- a labeling substance known to those skilled in the art such as a fluorescent dye, an enzyme, a coenzyme, a chemiluminescent substance, and a radioactive substance, can be used.
- radioisotopes 32 P, 14 C, 12 3 ⁇ 4, 3H, 1311, etc.
- Examples include lysozyme, saccharide oxidase, microperoxidase, and biotin.
- biotin When using biotin as a labeling substance, it is preferable to add avidin to which an enzyme such as alkaline phosphatase is bound after adding the biotin-labeled antibody.
- avidin For binding of the labeling substance to the anti-C20orfl02 antibody, a known method such as a dartalaldehyde method, a maleimide method, a pyridyl disulfide method, and a periodate method can be used.
- a solution containing an anti-C20orfl02 antibody is added to a support such as a plate, and the anti-C20orfl02 body is immobilized on the support.
- a support such as a plate
- the anti-C20orfl02 body is immobilized on the support.
- Block it with, for example, BSA, gelatin, or albumin to prevent nonspecific binding of proteins.
- Play after a moderate incubation Wash the plate and detect labeled anti-C20orfl02 antibody remaining on the plate.
- Detection can be performed by a method known to those skilled in the art. For example, in the case of labeling with a radioactive substance, detection can be performed by liquid scintillation or the RIA method.
- a substrate is added, and enzymatic change of the substrate, for example, color development can be detected by an absorptiometer.
- the substrate include 2,2-azinobis (3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt (ABTS), 1,2-phenylenediamine (ortho-phenylenediamine), 3,3 ', 5,5'-tetramethylbenzidine
- TMB TMB
- a fluorescent substance it can be detected by a fluorometer.
- a particularly preferred embodiment of the C20orfl02 protein detection method of the present invention includes a method using an anti-C20orfl02 antibody labeled with piotin and avidin.
- a solution containing the anti-C20orfl02 body is added to a support such as a plate, and the anti-C20orfl02 antibody is immobilized. After washing the plate, block with, for example, BSA to prevent nonspecific binding of proteins. Wash again and add the test sample to the plate. After incubation, wash and add biotin-labeled anti-C20orfl02 antibody. After a suitable incubation, wash the plate and add avidin conjugated to alkaline phosphatase, peroxidase and other enzymes. After incubation, wash the plate, add the substrate corresponding to the enzyme bound to avidin, and detect the C20orfl02 protein based on the enzymatic change of the substrate.
- the C20orfl02 protein detection method of the present invention one or more primary antibodies specifically recognizing C20orfl02 protein, and one or more secondary antibodies specifically recognizing the primary antibody are provided. The method used can be mentioned.
- test sample is contacted with one or more anti-C20orfl02 antibodies immobilized on a support, incubated, washed, and bound after washing.
- the C20orfl02 protein is detected with a primary anti-C20orfl02 antibody and one or more secondary antibodies that specifically recognize the primary antibody.
- the secondary antibody is preferably labeled with a labeling substance.
- Another embodiment of the method for detecting C20orfl02 protein of the present invention includes a detection method utilizing an agglutination reaction.
- C20orfl02 can be detected using a carrier sensitized with an anti-C20orfl02 antibody.
- Sensitize antibodies Any carrier may be used as long as it is insoluble, does not cause nonspecific reaction, and is stable.
- latex particles, bentonite, collodion, kaolin, fixed sheep erythrocytes and the like can be used, but latex particles are preferably used.
- polystyrene latex particles for example, polystyrene latex particles, styrene-butadiene copolymer latex particles, polyvinyl toluene latex particles and the like can be used, and it is preferable to use polystyrene latex particles.
- the higher the concentration of anti-C20orfl02 antibody in the sample the greater the degree of aggregation of the particles. Therefore, C20oi'fl02 can be detected by visual inspection of the aggregation. Further, it can be detected by measuring the turbidity due to aggregation with a spectrophotometer or the like.
- Another embodiment of the method for detecting the C20orfl02 protein of the present invention includes, for example, a method using a biosensor utilizing the surface plasmon resonance phenomenon.
- a biosensor using the surface plasmon resonance phenomenon can observe the interaction between protein and protein in real time as a surface plasmon resonance signal without labeling with a small amount of protein.
- the binding between C20orfl02 protein and anti-C20orfl02 antibody can be detected by using a biosensor such as BIAcore (manufactured by Amersham Bioscience).
- a test sample is brought into contact with a sensor chip on which an anti-C20orfl02 antibody is immobilized, and C20orfl02 protein binding to the anti-C20orfl02 antibody can be detected as a change in resonance signal.
- the detection method of the present invention can be automated using various automatic inspection devices, and it is possible to inspect a large number of samples at once.
- the present invention also aims to provide a diagnostic agent or kit for detecting C20orfl02 protein in a test sample for cancer diagnosis, and the diagnostic agent or kit contains at least an anti-C20orfl02 antibody.
- the diagnostic agent or kit may include a carrier for immobilizing the antibody, or the antibody may be bound to the carrier in advance.
- the diagnostic agent or kit may include a carrier to which an antibody is adsorbed.
- the kit may appropriately contain a blocking solution, a reaction solution, a reaction stop solution, a reagent for treating a sample, and the like.
- the anti-C20orfl02 antibody used in the present invention may be specifically bound to C20oi'fl02 protein, regardless of its origin, type (monoclonal or polyclonal) and shape. Specifically, known antibodies such as mouse antibodies, rat antibodies, human antibodies, chimeric antibodies, and humanized antibodies can be used.
- the antibody may be a polyclonal antibody, but is preferably a monoclonal antibody.
- the C20orfl02 antibody may recognize the same epitope of the C20orfl02 molecule, but preferably recognizes a different epitope, and the site is not particularly limited.
- the anti-C20orfl02 body used in the present invention can be obtained as a polyclonal or monoclonal antibody using known means.
- a mammal-derived monoclonal antibody is particularly preferable.
- Mammal-derived monoclonal antibodies include those produced in hybridomas and those produced in hosts transformed with expression vectors containing antibody genes by genetic engineering techniques.
- a monoclonal antibody-producing hybridoma can be basically produced using a known technique as follows. That is, C20orfl02 was used as a sensitizing antigen, and immunized according to a usual immunization method. The obtained immunocytes were fused with a known parent cell by a normal cell fusion method, and were subjected to a monoclonal screening by a normal screening method. It can be prepared by screening for null antibody-producing cells.
- a monoclonal antibody may be prepared as follows.
- C20orfl02 used as a sensitizing antigen for obtaining an antibody is obtained by expressing the Z amino acid sequence of the C20orfl02 gene disclosed in GenBank accession number: NM-080607. That is, after inserting a gene sequence encoding C20orfl02 into a known expression vector system and transforming an appropriate host cell, the target human C20orfl02 protein is isolated from the host cell or culture supernatant by a known method. Purify. In addition, natural C20orfl02 can be purified and used.
- this purified C20orfl02 protein is used as a sensitizing antigen.
- a partial peptide of C20orfl02 can be used as a sensitizing antigen.
- the partial peptide may be obtained by chemical synthesis from the amino acid sequence of human C20orfl02.
- it can be obtained by incorporating a part of the C20orfl02 gene into an expression vector, and can also be obtained by degrading natural C20orfl02 with a protease.
- the portion and size of C20orfl02 used as a partial peptide are not limited.
- the mammal to be immunized with the sensitizing antigen is not particularly limited, but is preferably selected in consideration of compatibility with the parent cell used for cell fusion.
- rodents Animals, for example, mice, rats, hamsters, or egrets and salmon are used.
- Immunization of an animal with a sensitizing antigen is performed according to a known method.
- a sensitizing antigen is injected intraperitoneally or subcutaneously into a mammal.
- the sensitizing antigen is diluted and suspended in an appropriate amount with PBS (Phosphate-Buffered Saline) or physiological saline, and then mixed with an appropriate amount of a normal adjuvant, for example, Freund's complete adjuvant, if desired, and emulsified.
- a suitable carrier can be used during immunization of the sensitizing antigen.
- immunization is preferably performed by binding to a carrier protein such as albumin or keyhole rind hemosinin.
- immunocytes are collected from the mammal and subjected to cell fusion. Splenocytes.
- Mammalian myeloma cells are used as the other parent cells fused with the immune cells.
- This myeloid cell is composed of various known cell lines, for example, P3
- the cell fusion between the immune cells and the myeloma cells is basically performed by a known method.
- Koera and G. Milstein, C. are known methods.
- the cell fusion is performed, for example, in a normal nutrient medium in the presence of a cell fusion promoter.
- a cell fusion promoter for example, polyethylene glycol (PEG), Sendai virus (HVJ) or the like is used, and if necessary, an auxiliary agent such as dimethyl sulfoxide can be added to increase the fusion efficiency.
- PEG polyethylene glycol
- HVJ Sendai virus
- an auxiliary agent such as dimethyl sulfoxide can be added to increase the fusion efficiency.
- the usage ratio of the immune cells and the myeloma cells can be arbitrarily set. For example, it is preferable that the number of immune cells be 1 to 10 times the number of myeloid cells.
- the culture medium used for the cell fusion for example, RPMI1640 culture medium, MEM culture medium suitable for the growth of the myeloma cell line, and other ordinary culture medium used for this kind of cell culture can be used. Further, a serum replacement solution such as fetal calf serum (FCS) can be used together.
- FCS fetal calf serum
- a predetermined amount of the immune cells and myeloma cells are mixed well in the culture solution, and a PEG solution (for example, having an average molecular weight of about 1000 to 6000) which has been heated to about 37 ° C. in advance is usually used for 30 to 60 minutes. % (w / v) and mix to form the desired fusion cells (ibri'doma).
- a PEG solution for example, having an average molecular weight of about 1000 to 6000
- % (w / v) and mix to form the desired fusion cells (ibri'doma).
- an appropriate culture solution is added successively, and the operation of removing the supernatant by centrifugation is repeated to remove a cell fusion agent or the like that is unfavorable for the growth of the hybridoma.
- the hybridoma thus obtained is selected by culturing it in a normal selective culture solution, for example, a HAT culture solution (a culture solution containing hypoxanthine, aminopterin and thymidine).
- a HAT culture solution a culture solution containing hypoxanthine, aminopterin and thymidine.
- the culturing in the HAT culture solution is continued for a time (usually several days to several weeks) sufficient for cells other than the target hybridoma (non-fused cells) to die.
- a conventional limiting dilution method is performed to screen for hybridomas producing the desired antibody and to perform single screening.
- the screening and single-cloning of the target antibody may be performed by a screening method based on a known antigen-antibody reaction.
- an antigen is bound to a carrier such as beads made of polystyrene or a commercially available 96-well microtiter plate, reacted with the culture supernatant of the hybridoma, and the enzyme-labeled secondary antibody is washed after washing the carrier.
- the reaction can be performed to determine whether or not the culture supernatant contains the target antibody that reacts with the sensitizing antigen.
- Hybridomas producing the desired antibody can be cloned by a limiting dilution method or the like. In this case, the antigen is exempt What was used for the epidemic may be used.
- the hybridoma producing the monoclonal antibody thus produced can be subcultured in a normal culture solution, and can be stored for a long time in liquid nitrogen.
- the monoclonal antibody can be obtained from the eight hybridomas by culturing the eight hybridomas according to a conventional method and obtaining the culture supernatant, or by administering the hybridoma to a mammal compatible with the same. Then, a method of obtaining ascites is used.
- the former method is suitable for obtaining high-purity antibodies, while the latter method is suitable for mass production of antibodies.
- a recombinant antibody produced by cloning an antibody gene from a hybridoma, incorporating the gene into an appropriate vector, introducing this into a host, and using a gene recombination technique.
- Vandamme AM et al "Eur. J. Biochem. (1990) 192, 767-775, 1990.
- the mRNA encoding the variable (V) region of the C20orfl02 antibody is isolated by a known method, for example, guanidine ultracentrifugation (Chirgwin, JM et al., Biochemistry (1979) 18, 5294-5299). ), The total RNA is prepared by the AGPC method (Chomczynski, Ret al., Anal. Biochem. (1987) 162, 156-159), etc., and the target mRNA is purified using the mRNA Purification Kit (Pharmacia). To be prepared.
- MRNA can also be directly prepared by using QuickPrep mRNA Purification Kit (Pharmacia).
- cDNA for the antibody V region is synthesized using reverse transcriptase.
- cDNA is synthesized using AMV Reverse Transcriptase First-strand cDNA Synthesis Kit (manufactured by Seikagaku Corporation) or the like.
- AMV Reverse Transcriptase First-strand cDNA Synthesis Kit manufactured by Seikagaku Corporation
- 5'-Ampli FINDER RACE Kit Clontech
- 5'-RACE method using PCR Frohman, MA et al., Pi'oc. Natl. Acad. Sci. USA (1988) 85, 8998-9002, Belyavsky, A. et al., Nucleic Acids Res. (1989) 17, 2919-2932) and the like can be used.
- the antibody gene is incorporated into an expression vector so that the antibody gene is expressed under the control of an expression control region, for example, an enpanther or a promoter.
- host cells are transformed with the expression vector to express the antibody.
- Antibody gene expression can be performed by co-transforming host cells by separately incorporating DNA encoding the antibody heavy chain (H chain) or light chain (L chain) into an expression vector, or DNA encoding the chain and L chain may be incorporated into a single expression vector to transform host cells (see WO 94/11523).
- transgenic animals For the production of recombinant antibodies, not only the above host cells but also transgenic animals can be used.
- an antibody gene is prepared as a fusion gene by inserting it into the middle of a gene encoding a protein (eg, goat 3 casein) that is specifically produced in milk.
- a DNA fragment containing the fusion gene into which the antibody gene has been inserted is injected into a goat embryo, and the embryo is introduced into a female goat.
- the desired antibody is obtained from the milk produced by the transgenic goat produced from the goat that has received the embryo or its progeny.
- Hormones may be used in transgeneic goats as appropriate to increase the amount of milk containing the desired antibody produced from transgeneic goats (Ebert, KM et al., Bio / Technology). (1994) 12, 699-702).
- artificially modified genetically modified antibodies for example, chimeric antibodies and humanized antibodies can be used. These modified antibodies can be produced using known methods.
- the chimeric antibody can be obtained by ligating the DNA encoding the antibody V region obtained as described above with the DNA encoding the human antibody C region, incorporating the DNA into an expression vector, introducing the protein into a host, and producing the antibody. Using this known method, a chimeric antibody useful in the present invention can be obtained.
- a humanized antibody is also called a reshaped human antibody, which transfers the complementarity determining region (CDR) of a non-human mammal, such as a mouse antibody, to the complementarity determining region of a human antibody.
- CDR complementarity determining region
- the general method of gene recombination is also known (see European Patent Application Publication No. EP 125023, WO 96/02576).
- the framework region of the human antibody to be linked via CDR is selected so that the complementarity-determining region forms a favorable antigen-binding site. If necessary, framework region amino acids in the variable region of the antibody may be substituted so that the complementarity determining region of the reshaped human antibody forms an appropriate antigen-binding site (Sato, K. et al. ., Cancer Res. (1993) 53, 851-856).
- C region of chimeric and humanized antibodies those of a human bovine are used.
- C rl, C a 2, C r 3> C a 4 for the H chain, and C ⁇ , C ⁇ can be used.
- the human antibody C region may be modified to improve the stability of the antibody or its production.
- a chimeric antibody comprises a variable region of an antibody derived from a mammal other than human and a constant region derived from a human antibody.
- a humanized antibody is composed of a complementarity determining region of an antibody derived from a mammal other than human, a framework region and a C region derived from a human antibody. Since the humanized antibody has reduced antigenicity in the human body, it is useful as an effective component of the therapeutic agent of the present invention.
- the antibody used in the present invention is not limited to the whole antibody molecule, and may be an antibody fragment or a modified product thereof as long as it binds to C20orfl02, and includes both bivalent antibodies and monovalent antibodies.
- antibody fragments include Fab, F (ab2, Fv, Fab / c having one Fab and complete Fc, or single chain Fv in which Hv or L chain Fv are linked by an appropriate linker.
- an antibody is treated with an enzyme such as papain or pepsin to generate an antibody fragment, or a gene encoding these antibody fragments is constructed and expressed in an expression vector.
- expression is performed in a suitable host cell (for example, Co, MS et al., J. Immunol. (1994) 152, 2968-2976, Better, M. & Horwitz, AH Methods in Enzymology (1989). ) 178, 476-496, Academic Press, Inc. ⁇ Plueckthun, A. & Skerra, A. Methods in
- scFv can be obtained by linking the H chain V region and L chain V region of the antibody.
- the H chain V region and L chain V region are linked via a linker, preferably a peptide linker (Huston, JS et al., Proc. Natl. Acad. Sci. USA (1988) 85 , 5879-5883).
- the H chain V region and L chain V region in the scFv may be from any of those described herein as antibodies.
- the peptide linker connecting the V regions for example, any single-chain peptide consisting of 12 to 19 amino acids is used.
- the DNA encoding the scFv may be any of the DNA encoding the H chain or the V region of the H chain and the DNA encoding the L chain or the V region of the L chain of the antibody.
- the DNA portion encoding the desired amino acid sequence is designated as type II, amplified by the PCR method using a primer pair defining both ends, and then the DNA encoding the peptide linker portion, and both ends thereof are It can be obtained by combining and amplifying a pair of primers defined so as to be linked to the H chain and the L chain.
- DNAs encoding scFv are prepared, expression vectors containing them and a host transformed with the expression vector can be obtained in accordance with a conventional method. To obtain scFv in the usual way You can.
- antibody fragments can be obtained and expressed in the same manner as described above, and produced by a host.
- the “antibody” in the present invention includes these antibody fragments.
- an anti-C20orfl02 antibody bound to various molecules such as a labeling substance can also be used.
- the “antibody” in the present invention also includes these modified antibodies.
- Such a modified body can be obtained by chemically modifying the obtained antibody. Methods for modifying antibodies have already been established in this field.
- the antibody used in the present invention may be a bispecific antibody.
- the bispecific antibody may be a bispecific antibody having an antigen-binding site recognizing a different epitope on the C20orfl02 molecule.
- One antigen-binding site may recognize C20orfl02, and the other The antigen binding site may recognize a labeling substance or the like.
- Bispecific antibodies can be produced by combining the HL pairs of two types of antibodies, or by fusing hybridomas producing different monoclonal antibodies to produce bispecific antibody-producing fusion cells. You can also get.
- bispecific antibodies can be produced by genetic engineering techniques.
- the antibody gene constructed as described above can be expressed and obtained by a known method.
- a useful promoter commonly used an antibody gene to be expressed, and a polyA signal operably linked to the 3 ′ downstream thereof can be expressed.
- virus promoters such as retroviruses, polioviruses, adenoviruses, simian virus 40 (SV40), etc.
- Promoters / enhancers derived from mammalian cells such as SHILLFACTOR-1 (HEFla).
- a useful promoter commonly used, a signal sequence for antibody secretion, and an antibody gene to be expressed can be operably linked to express the gene.
- the promoter include the lacz promoter and the araB promoter. The method of Ward et al. (Nature (1098) 341, 544-546; FASEB J. (1992) 6, 2422-2427) when using the lacz promoter overnight, or Better et al. when using the araB promoter (Science (1988) 240, 1041-1043).
- a pelB signal sequence (Lei, SP et al J. Bacteriol. (1987) 169, 4379) may be used for production in E. coli periplasm. Then, after separating the antibody produced in the periplasm, the antibody structure is appropriately refolded and used.
- the origin of replication those derived from SV40, poliovirus, adenovirus, dys-pipilloma virus (BPV), etc. can be used.
- the expression vector must be used to amplify the gene copy number in the host cell system.
- an aminoglycoside transferase (APH) gene, a thymidine kinase (TK) gene, an Escherichia coli xanthinguanine phospholiposyltransferase (Ecogpt) gene, a dihydrofolate reductase (dhfr) gene and the like can be included.
- Eukaryotic cells include, for example, established mammalian cell lines, insect cell lines, animal cells such as fungal cells and yeast cells, and prokaryotic cells include, for example, bacterial cells such as Escherichia coli. No.
- the antibodies used in the present invention are expressed in mammalian cells, such as CHO, COS, myeloma, BHK, Vero, HeLa cells.
- mammalian cells such as CHO, COS, myeloma, BHK, Vero, HeLa cells.
- the transformed host cells are cultured in vitro or in vivo to produce the desired antibody.
- Culture of the host cell is performed according to a known method.
- DMEM, MEM, RPMI1640, IMDM can be used as a culture solution
- a serum replacement solution such as fetal calf serum (FCS) can be used in combination.
- FCS fetal calf serum
- Antibodies expressed and produced as described above can be separated from cells and host animals and purified to homogeneity. Separation and purification of the antibody used in the present invention can be carried out using an affinity column. For example, color using a protein A column Examples include Hyper D, POROS, Sepharose FF (Pharmacia) and the like. In addition, the separation and purification methods used for ordinary proteins may be used, and there is no limitation. For example, antibodies can be separated and purified by appropriately selecting and combining a mouth chromatography column other than the above affinity column, a filter, ultrafiltration, salting out, dialysis, etc. (Antibodies A Laboratory Manual. Ed Harlow, David Lane, Cold Spring Harbor Laooratory, 1988). The cancer-related gene of the present invention
- Table 1 shows a list of names of cancer-related genes identified in the present invention, cancer tissues whose expression is advanced, and the sequence numbers of these genes and the encoded proteins.
- TEG38 ubiauitinD NM 006398 Gastric cancer, colorectal cancer, lung cancer, moderately poorly differentiated liver cancer, lung cancer, tunnel cancer 37 97
- TEG50 T0P1 T AW592604 NM 052963 Colorectal cancer, poorly differentiated liver cancer, metastatic tissue from colon cancer (liver), II extracted cancer 49 109
- TEG1 (SEQ ID NO: 2; SEQ ID NO: 66) encodes C20orfl02.
- GenBank accession number for this gene is AA206763 (reference sequence NM—080607). This gene was found to be upregulated in lung cancer, moderately differentiated liver cancer, and cancer. It is not known that the expression of this gene is associated with cancer.
- TEG2 (SEQ ID NO: 3; SEQ ID NO: 67) encodes EST (ASCL2).
- GenBank accession number for this gene is AI393930.
- the expression of this gene was found to be upregulated in gastric, colorectal, lung, lung cancer and metastatic tissues (liver) of the colon. It is not known that the expression of this gene is associated with cancer.
- TEG3 (SEQ ID NO: 4) encodes EST (EPSTlisoform).
- GenBank accession number for this gene is BE645480. This gene was found to be upregulated in gastric cancer, moderately differentiated liver cancer, colon cancer, lung cancer, Teng cancer, and metastatic tissue (liver) of colon cancer. It is not known that the expression of this gene is associated with cancer.
- TEG4 (SEQ ID NO: 5) encodes EST.
- GenBank accession number for this gene is AA447317. This gene was found to be upregulated in gastric, colon and metastatic tissues (liver) of the colon. It is not known that the expression of this gene is associated with cancer. -
- TEG5 (SEQ ID NO: 6) encodes EST.
- GenBank accession number for this gene is ⁇ 2 ⁇ 7375.
- the expression of this gene was found to be upregulated in stomach cancer and cancer.
- the expression of this gene is not known to be associated with cancer.
- TEG6 (SEQ ID NO: 7; SEQ ID NO: 68) encodes OK / SW-CL30.
- GenBank accession number for this gene is ⁇ 2 ⁇ 7375. This gene was found to be upregulated in lung, stomach, colorectal and moderately differentiated liver cancers. It is not known that expression of this gene is associated with cancer.
- TEG7 (SEQ ID NO: 8) encodes DKFZp686L1533.
- GenBank accession number for this gene is BG492359.
- the expression of this gene was found to be upregulated in lung cancer, stomach cancer, colorectal cancer, medium- and low-grade liver cancer, and metastatic tissue (liver) of colorectal cancer. It is not known that the expression of this gene is associated with cancer.
- TEG8 (SEQ ID NO: 10; SEQ ID NO: 69) encodes EST (Gene # 30).
- the protein encoded by this gene is a membrane protein.
- the accession number 0611: 6 & 111 ⁇ for this gene is 8825703. This gene is used in gastric cancer, poorly differentiated Expression was found to be advanced in liver cancer and lung cancer. It is not known that the expression of this gene is associated with cancer.
- TEG9 (SEQ ID NO: 11; SEQ ID NO: 70) encodes BC012317.
- GenBank accession number for this gene is AL389981.1.
- the expression of this gene was found to be upregulated in metastatic tissues (liver) of gastric, poorly differentiated liver, Teng, and colorectal cancer. It is not known that the expression of this gene is associated with cancer.
- TEG10 (SEQ ID NO: 12) encodes EST242881.
- GenBank accession number for this gene is BG285837.
- the expression of this gene was found to be upregulated in gastric cancer, moderately and poorly differentiated liver cancer, and lung cancer. It is not known that the expression of this gene is related to.
- TEG11 (SEQ ID NO: 13; SEQ ID NO: 71) encodes FLJ11041.
- GenBank accession number for this gene is AI343467.
- the expression of this gene was found to be upregulated in gastric cancer, colon cancer, moderately differentiated liver cancer, lung cancer, ⁇ cancer, and metastatic tissue (liver) of colon cancer. It is not known that the expression of this gene is associated with cancer.
- TEG12 (SEQ ID NO: 15; SEQ ID NO: 72) encodes EST.
- GenBank accession number for this gene is BF057073.
- the full-length sequence of this gene has been elucidated in the present invention. This gene was found to be upregulated in liver cancer. It is not known that the expression of this gene is associated with cancer.
- TEG13 (SEQ ID NO: 16) codes for EST.
- GenBank accession number for this gene is H66658. This gene was found to be upregulated in liver cancer. It is not known that the expression of this gene is associated with cancer.
- TEG14 (SEQ ID NO: 17; SEQ ID NO: 73) encodes ASPM.
- GenBank accession number for this gene is NM-018123.1. This gene was found to be upregulated in gastric, colon, liver and lung cancers. Expression of this gene is not known to be associated with cancer.
- TEG15 (SEQ ID NO: 18; SEQ ID NO: 74) encodes Sp5.
- GenBank accession number for this gene is AI380207. This gene was found to be up-regulated in gastric, colon, liver and lung cancers. The expression of this gene It is not known to be associated with cancer.
- TEG16 (SEQ ID NO: 19) encodes IMAGE: 297403.
- GenBank accession number for this gene is AF339813.1.
- the expression of this gene was found to be upregulated in liver, lung, Teng and colon cancer metastatic tissues (liver). It is not known that expression of this gene is associated with cancer.
- TEG17 (SEQ ID NO: 20; SEQ ID NO: 75) codes for DKFZp434k2435.
- the protein encoded by this gene is a membrane protein.
- GenBank accession number for this gene is AL136855.1 (reference sequence NM_032256). This gene was found to be upregulated in gastric, colon, lung, and ⁇ cancers. It is not known that the expression of this gene is associated with cancer.
- TEG18 (SEQ ID NO: 22; SEQ ID NO: 76) encodes CBRC7TM-249.
- the protein encoded by this gene is a membrane protein.
- the accession number for this gene is 06118 & 111 ⁇ , _ ⁇ 1694413. This gene was found to be upregulated in gastric cancer, colorectal cancer, moderately and poorly differentiated liver cancer, ⁇ cancer, and metastatic tissue (liver) of colorectal cancer. It is not known that the expression of this gene is associated with cancer.
- TEG19 (SEQ ID NO: 1; SEQ ID NO: 77) encodes VLGR1.
- the protein encoded by this gene is a membrane protein.
- GenBank accession number for this gene is AF055084.1 (reference sequence NM-032119). This gene was found to be upregulated in lung pain and knee cancer. It is not known that expression of this gene is associated with cancer.
- TEG20 (SEQ ID NO: 9; SEQ ID NO: 78) encodes C20orf54.
- the protein encoded by this gene is a membrane protein.
- GenBank accession number for this gene is AA903862 (reference sequence NM_033409). This gene was found to be up-regulated in gastric, colon, lung and metastatic tissues (liver) of the colon. It is not known that the expression of this gene is associated with cancer.
- TEG21 (SEQ ID NO: 14; SEQ ID NO: 79) encodes RHBG.
- the protein encoded by this gene is a membrane protein.
- GenBank accession number of this gene is NM_020407.1 (reference sequence NM_020407). This gene was found to be upregulated in liver cancer. It is not known that expression of this gene is associated with cancer.
- TEG22 (SEQ ID NO: 21; SEQ ID NO: 80) encodes COPG2. This The GenBank accession number of the gene is AB047847.1 (reference sequence NM-012133). This gene was found to be upregulated in colorectal and lung cancers. It is not known that the expression of this gene is associated with cancer.
- TEG23 (SEQ ID NOs: 64, 65; SEQ ID NOs: 81, 82) encodes EST.
- GenBank accession number for this gene is AL039884.
- the full-length sequence of this gene has been clarified in the present invention.
- the expression of this gene was found to be upregulated in poorly differentiated liver cancer and lung cancer. It is not known that the expression of this gene is associated with cancer.
- TEG24 (SEQ ID NO: 23; SEQ ID NO: 83) encodes BE670584.
- GenBank accession number for this gene is BE670584. This gene was found to be upregulated in gastric, lung and colon cancer metastatic tissues (liver). It is not known that the expression of this gene is associated with cancer.
- TEG25 (SEQ ID NO: 24; SEQ ID NO: 84) encodes GRP49.
- the protein encoded by this gene is a membrane protein.
- the GenBank accession number for this gene is AL524520 (reference sequence NMJ303667). This gene was found to be upregulated in gastric, colorectal, moderately differentiated liver, lung and metastatic tissues (liver). It is not known that the expression of this gene is associated with cancer.
- TEG26 (SEQ ID NO: 25; SEQ ID NO: 85) encodes MUC17.
- the protein encoded by this gene is a membrane protein.
- GenBank accession number for this gene is AK026404.1. This gene was found to be upregulated in gastric and ⁇ cancers. The expression of this gene is not known to be associated with gastric cancer.
- TEG27 (SEQ ID NO: 26; SEQ ID NO: 86) encodes EPHB2.
- the protein encoded by this gene is a membrane protein.
- GenBank accession number for this gene is AF025304.1 (reference sequence NM-004442). This gene was found to be upregulated in gastric, colon, lung, and metastatic tissues (liver) of the colon. It is not known that the expression of this gene is associated with colorectal cancer.
- TEG28 (SEQ ID NO: 27; SEQ ID NO: 87) is a copy of GPCR41 (FLJ11856).
- the protein encoded by this gene is a membrane protein.
- GenBank accession number of the gene is AK021918.1 (reference sequence NM-024531). This gene was found to be upregulated in stomach cancer, colon cancer, lung cancer, colon cancer metastatic tissue (liver), and ⁇ cancer. It is not known that the expression of this gene is associated with gastric cancer.
- TEG29 (SEQ ID NO: 28; SEQ ID NO: 88) encodes HS6ST2.
- the protein encoded by this gene is a membrane protein.
- GenBank accession number for this gene is AI767756.
- the expression of this gene was found to be upregulated in lung cancer, colon cancer, hypoxic liver cancer, and cancer. It is not known that the expression of this gene is associated with lung cancer.
- TEG30 (SEQ ID NO: 29; SEQ ID NO: 89) encodes PCDHB2.
- the protein encoded by this gene is a membrane protein.
- GenBank accession number for this gene is NM-018936.1 (reference sequence NM-018936). This gene was found to be up-regulated in pulmonary pain and caves. It is not known that the expression of this gene is associated with lung cancer.
- TEG31 (SEQ ID NO: 30; SEQ ID NO: 90) encodes WFDC3 (C20orfl67).
- GenBank accession number for this gene is AL050348. This gene was found to be up-regulated in lung cancer,)! It is not known that the expression of this gene is associated with lung cancer.
- TEG32 (SEQ ID NO: 31; SEQ ID NO: 91) encodes C20orf42.
- GenBank accession number for this gene is NM-017671.1 (reference sequence NM_017671). This gene was found to be upregulated in lung, stomach, colorectal and metastatic tissues (liver) of colorectal cancer. It is not known that the expression of this gene is associated with lung cancer.
- TEG33 (SEQ ID NO: 32; SEQ ID NO: 92) encodes PIGR.
- the protein encoded by this gene is a membrane protein.
- GenBank accession number for this gene is NM-002644.1 (reference sequence NM-002644). This gene was found to be upregulated in lung and colorectal cancer. The expression of this gene is not known to be associated with lung cancer.
- TEG34 (SEQ ID NO: 33; SEQ ID NO: 93) encodes 2FE2L3.
- GenBank accession number for this gene is M-0044289.3 (reference sequence M-004289).
- This gene originates in stomach cancer, colon cancer, lung cancer, colon cancer metastatic tissue (liver), ⁇ ⁇ cancer It has been found that the reality is exacerbated. It is not known that the expression of this gene is associated with gastric cancer.
- TEG35 (SEQ ID NO: 34; SEQ ID NO: 94) encodes TRAG3.
- GenBank accession number for this gene is NM_004909.1 (reference sequence NM_p04909).
- the expression of this gene was found to be upregulated in gastric, lung and cancer cells. It is not known that the expression of this gene is associated with gastric cancer.
- TEG36 (SEQ ID NO: 35; SEQ ID NO: 95) encodes TRIM31.
- GenBank accession number for this gene is NM-007028.
- the expression of this gene was found to be upregulated in gastric, Xue, and lung cancers. It is not known that the expression of this gene is associated with gastric cancer.
- TEG37 (SEQ ID NO: 36; SEQ ID NO: 96) encodes KIAA1359.
- the GeenBank accession number for this gene is AB037780. This gene was found to be upregulated in stomach, lung, colorectal, colorectal and metastatic tissues (liver) of the colon. It is not known that the expression of this gene is associated with gastric cancer.
- TEG38 (SEQ ID NO: 37; SEQ ID NO: 97) encodes ubiqutinD.
- GenBank accession number for this gene is NM-006398. This gene was found to be upregulated in stomach cancer, colon cancer, lung cancer, moderately and poorly differentiated liver cancer, lung cancer, and ⁇ cancer. It is not known that the expression of this gene is associated with gastric cancer.
- TEG39 (SEQ ID NO: 38; SEQ ID NO: 98) encodes Hephaestin.
- the protein encoded by this gene is a membrane protein.
- GenBank accession number for this gene is NM-014799.1 (reference sequence NM-014799). This gene was found to be upregulated in gastric cancer, colorectal cancer metastatic tissue (liver), and cancer. It is not known that the expression of this gene is associated with gastric cancer.
- TEG40 (SEQ ID NO: 39; SEQ ID NO: 99) encodes KIAA0152.
- the protein encoded by this gene is a membrane protein.
- GenBank accession number for this gene is BC000371.1 (reference sequence NM-014730). This gene was found to be upregulated in gastric, colorectal, glioblastoma and lung cancers. It is not known that the expression of this gene is associated with gastric cancer.
- TEG41 (SEQ ID NO: 40; SEQ ID NO: 100) encodes KIAA0703.
- the protein encoded by this gene is a membrane protein.
- the accession number for this gene is 06] 18 & 111 ⁇ , marauder-014861.1 (reference sequence NM-014861). This was found to be upregulated in gastric, lung and colon metastases (liver). It is not known that the expression of this gene is associated with gastric cancer.
- TEG42 (SEQ ID NO: 41; SEQ ID NO: 101) encodes MEST / PEG1.
- GenBank accession number for this gene is NM-002402.1 (reference sequence
- NM—002402 The expression of this gene was found to be upregulated in gastric, colon and lung cancers. It is not known that the expression of this gene is associated with gastric cancer.
- TEG43 (SEQ ID NO: 42; SEQ ID NO: 102) encodes KIAA1199.
- GenBAnk accession number for this gene is AB033025.1. This gene was found to be up-regulated in stomach cancer, lung cancer, colon healing, and cancer. The expression of this gene is not known to be associated with gastric cancer.
- TEG44 (SEQ ID NO: 43; SEQ ID NO: 103) encodes ELOVL2.
- GenBank accession number for this gene is BF508639 (reference sequence NM-017770). This gene was found to be upregulated in liver, glioblastoma, and lung cancers.
- TEG45 (SEQ ID NO: 44; SEQ ID NO: 104) encodes ROB01.
- the protein encoded by this gene is a membrane protein.
- GenBank accession number for this gene is BF059159 (reference sequence NM-133631). This gene was found to be up-regulated in liver cancer, glioblastoma, and lung cancer.
- TEG46 (SEQ ID NO: 45; SEQ ID NO: 105) encodes FLJ10504MISATO.
- the G EnBank accession number for this gene is BC002535.1 (reference sequence NM_018116). This gene was found to be upregulated in liver cancer, lung cancer, and fl. It is not known that the expression of this gene is associated with liver cancer.
- TEG47 (SEQ ID NO: 46; SEQ ID NO: 106) encodes cystatinSN.
- accession number for this gene is NM— 001898.1 (reference sequence
- NM_0018978 This gene was found to be upregulated in colorectal and lung cancers. It is not known that the expression of this gene is associated with colorectal cancer.
- TEG48 (SEQ ID NO: 47; SEQ ID NO: 107) encodes LOC116238.
- GenBank accession number for this gene is BE328850 (reference sequence NM138463). is there. The expression of this gene was found to be upregulated in gastric, colon, lung, poorly differentiated liver and Teng cancer.
- TEG49 (SEQ ID NO: 48; SEQ ID NO: 108) encodes MRPL50.
- GenBank accession number for this gene is BG028213 (reference sequence NM_019051). This gene was found to be upregulated in stomach cancer, colorectal cancer, moderately and poorly differentiated liver cancer, glioblastoma and lung cancer.
- TEG50 (SEQ ID NO: 49; SEQ ID NO: 109) codes for TOPlmt.
- GenBAnk accession number for this gene is AW592604 (reference sequence NM-052963).
- the expression of this gene was found to be upregulated in colon cancer, poorly differentiated liver cancer, metastatic tissue (liver) of colon cancer, and Teng cancer. It is not known that the expression of this gene is associated with colorectal cancer.
- TEG51 (SEQ ID NO: 50; SEQ ID NO: 110) encodes FKSG14.
- the Gene Bank accession number for this gene is BC005400.1 (reference sequence NM_022145). This gene was found to be upregulated in gastric, colon, lung and knee cancers. It is not known that the expression of this gene is associated with colorectal cancer.
- TEG52 (SEQ ID NO: 51; SEQ ID NO: 111) encodes CDH3.
- the protein encoded by this gene is a membrane protein.
- GenBank accession number for this gene is NM-001793.1 (reference sequence NM-00-793). This gene was found to be up-regulated in lung, stomach, colon and cancer.
- TEG53 (SEQ ID NO: 52; SEQ ID NO: 112) encodes NRP2.
- the protein encoded by this gene is a membrane protein.
- GenBank accession number for this gene is N90777 (reference sequence. NM-003872). This gene was found to be up-regulated in lung cancer, glioblastoma, metastatic tissue from colon cancer (liver), and Teng cancer.
- TEG54 (SEQ ID NO: 53; SEQ ID NO: 113) encodes CLDN3.
- the protein encoded by this gene is a membrane protein.
- the GenBank accession number for this gene is BE791251 (reference sequence NM_001306). This gene was found to be upregulated in gastric, lung, colorectal and metastatic tissues (liver) of colorectal cancer. It is not known that the expression of this gene is associated with gastric cancer.
- TEG55 (SEQ ID NO: 54; SEQ ID NO: 114) encodes CLDN4.
- the protein encoded by this gene is a membrane protein.
- G of this gene The accession number for e n Bank is NM-001305.1 (reference sequence NM-001305). This gene was found to be upregulated in stomach cancer, lung cancer, colon cancer, metastatic tissue (liver) of colon cancer, and Teng cancer. It is not known that the expression of this gene is associated with gastric cancer.
- TEG56 (SEQ ID NO: 55; SEQ ID NO: 115) encodes sfrp4.
- GenBank accession number for this gene is AW089415 (reference sequence NM-003014). This gene was found to be upregulated in lung, stomach, glioblastoma and S-extracted cancers. It is not known that the expression of this gene is associated with gastric cancer.
- TEG57 (SEQ ID NO: 56; SEQ ID NO: 116) encodes ASPSCR1.
- GenBank accession number for this gene is NM—024083.1 (reference sequence
- NM-024083 This gene was found to be upregulated in liver and lung cancers. It is not known that the expression of this gene is associated with liver cancer.
- TEG58 (SEQ ID NO: 57; SEQ ID NO: 117) encodes GAGEC1.
- GenBank accession number for this gene is NM-007003.1 (reference sequence
- NM—007003 This gene was found to be upregulated in liver cancer. It is not known that the expression of this gene is associated with liver cancer.
- TEG59 (SEQ ID NO: 58; SEQ ID NO: 118) encodes RHAMM.
- the protein encoded by this gene is a membrane protein.
- GenBank accession number for this gene is NM-012485.1 (reference sequence NM-012484).
- the expression of this gene was found to be upregulated in gastric, colon, liver and cancers. It is not known that the expression of this gene is associated with liver cancer.
- TEG60 (SEQ ID NO: 59; SEQ ID NO: 119) encodes PEG10.
- GenBank accession number for this gene is BE858180 (reference sequence NM-015068).
- the expression of this gene was found to be upregulated in liver cancer, lung cancer, and hepatoblastoma.
- TEG61 (SEQ ID NO: 60; SEQ ID NO: 120) encodes PAEP.
- GenBank accession number for this gene is NM-002571.1 (reference sequence NM-002571). This gene was found to be upregulated in lung and ⁇ cancers.
- TEG62 (SEQ ID NO: 61; SEQ ID NO: 121) encodes MGC10981.
- Gen Bank accession number for this gene is BC004397.1 (reference sequence NM-032654). This gene was found to be upregulated in lung and ⁇ cancers.
- TEG 63 (SEQ ID NO: 62; SEQ ID NO: 122) encodes DUSP9.
- the Gen Bank accession number for this gene is NM-001395.1 (reference sequence NM-001395). This gene was found to be upregulated in liver cancer.
- TEG64 (SEQ ID NO: 63; SEQ ID NO: 123) encodes KIAA1089.
- GenBank accession number for this gene is AB029012.1.
- the expression of this gene was found to be upregulated in liver, lung and Teng cancers.
- the contents of all patents and references explicitly cited herein are hereby incorporated by reference.
- the entire contents of the description and drawings of Japanese Patent Application No. 2003-290704, which is the application on which the priority claim of the present application is based, are incorporated herein by reference in their entirety. To quote. Example
- mRNA expression analysis was performed as described below.
- RNA was prepared from 12 lung adenocarcinoma-excised tissues including various stages of differentiation and 1 normal lung using ISOGEN (Nippon Gene) according to the attached method.
- ISOGEN Natural Gene
- mRNA expression in lung adenocarcinoma and normal lung was analyzed using GeneChip TM HG-U133A, B (Affymetryx).
- GeneChip TM HG-U133A, B Affymetryx
- Gene expression analysis was performed according to the Expression Analysis Technical Manual (Affymetryx II). The average value of the expression scores of all genes in each analysis was set to 100, and the expression level of each gene was set to a relative value.
- mRNA expression analysis was performed by the same method as described above.
- total RNA was prepared in the same manner as above from 3 cases of stomach cancer extirpated tissue and 1 normal stomach, and 5 pg of the cancer site was mixed with equal amounts of 3 cases of total RNA, and 5 pg was used as control.
- mRNA expression was analyzed using GeneCipTM HG "U133A, B (Affymetryx). Expression of all genes in each analysis The average score was set to 100, and the expression level of each gene was set to a relative value.
- total RNA was prepared in the same manner as above from the cancer site of 3 cases of excised tissue of large adenocarcinoma and 1 case of normal colon tissue, and the same amount of the total RNA of 3 cases was mixed for the cancer site.
- MRNA was analyzed using GeneChipTM HG- ui33A, B (manufactured by Affymetryx), using 5 pg of total RNA prepared from a normal stomach of one case as a control as a sample.
- the average value of the expression scores of all genes in each analysis was set to 100, and the expression level of each gene was set to a relative value.
- RNA and mix 5 pg of total RNA from 3 cases for each cancer site with different degrees of differentiation 5 pg of total RNA prepared from 1 normal liver sample as control MRNA expression was analyzed using GeneChip TM HG-U133A, B (Affymetryx). The average value of the expression scores of all genes in each analysis was set to 100, and the expression level of each gene was calculated as a relative value. did.
- total RNA was prepared in the same manner as described above from the cancer site of the excised tissue of 5 cases of Daryablastoma and 1 normal brain tissue, and the same amount of the total RNA of 5 cases was mixed for the cancer site.
- mRNA expression was analyzed using GeneChip TM HG-U133A, B (Affymetryx). The average of the expression scores of all genes in each analysis was set to 100, and the expression level of each gene was set to a relative value.
- TEG1 C20orf102 Lung cancer moderately differentiated liver cancer 32 299.3 98.6 50.3 95.2 18.4 39.1 104.9 13 834.4 90.8
- TEG3 EST Gastric cancer, moderately differentiated liver cancer 65.1 74.6 92.1 440.8 112.9 107.6 142.3 216 164.4 53.2 86.9
- TEG4 EST Gastric cancer, colorectal cancer 50.9 25.1 41.4 117.2 52.5 106.8 12 38.5 12.5 31.2 61.1
- liver cancer 84.1 118.9 55.6 537.1 98.5 734.1 157.7 1781.4 160.8 78.7 106
- TEG8 EST Gastric cancer, poorly differentiated liver cancer 59.1 50.8 37.5 260.7 36.3 22.7 58.7 26.8 20 68.7 17.4
- TEG9 LOC93082 Gastric cancer, poorly differentiated liver cancer 107.3 34.5 14.5 1030.1 89.2 21.9 130 155.6 448.1 18.5 105.4
- TEG10 EST Gastric cancer, moderately poorly differentiated liver 38.1 37.8 32.8 385.8 20.3 20.5 28.2 103.9 356.5 60.2 63.5
- TEG29 Lung cancer colorectal cancer, poorly differentiated
- liver cancer 89.7 31 1.5 44.2 1172.8 60.1 605.7 269.2 1460.9 2542.8 42.1 69
- TEG45 R0B01 Liver cancer, glioblastoma 58.5 49.1 32.4 38 21.4 123.2 9.1 236.4 563 64.3 152.3
- TEG49 Gastric cancer colorectal cancer, medium-low
- glioblast 77.8 86.1 98.1 191.2 43.8 256.5 72 155.3 200.8 47.7 100
- TEG56 SFRP4 Lung cancer gastric cancer
- glioblast 153.6 244.9 66.9 153.1 69.4 87.8 51.1 49.2 49.3 53.4 250.3
- TEG1-TEG18 up-regulation of TEG1-TEG18 has not been clarified in any cancer cells so far, and the present analysis showed that the expression is increased by 7 ⁇ in certain cancers.
- GeneChipTM HG-U133A, B (Affymetryx) and Gene Chip TM HG-Ul33plus2 (Ametryx) were used.
- Total RNA was prepared in the same manner as described above. Then, mRNA expression analysis of 5 pg of the total RNA was performed using GeneChip TM HG-U133A, B.
- RNA prepared from various excised cancer tissues was analyzed collectively, and in order to confirm the results of Gene chip analysis, the mRNA of each gene in individual cancer samples and normal tissues in non-cancerous parts was examined.
- the expression level was analyzed by the R "PCR method, and the degree of expression enhancement and the frequency of expression enhancement were examined.
- Single-stranded cDNA to be used as type I DNA for PCR was prepared from various human cancer tissues and normal tissues as follows.
- RNA for lung adenocarcinoma, from 12 cases of lung adenocarcinoma tissue and 4 cases of normal lung tissue, and for human colorectal cancer, 10 cases of human colorectal cancer tissue and from normal colorectal tissue of non-cancerous part of the removed tissue, human gastric cancer
- 12 cases of human stomach cancer extirpated tissues and normal stomach tissues of non-cancerous parts of the extirpated tissues and 9 cases of human liver cancers from human extirpated hepatocarcinoma tissues and non-cancerous parts of the extirpated tissues
- single-stranded cDNA was synthesized from total RNA using the reverse transcriptase Superscripffl (GIBCO BRL). The single-stranded cDNA thus prepared was used as type I DNA in the PCR described below.
- mRNA expression levels of each gene shown in Table 2 were analyzed by RT-PCR. That is, 25 pL of the PCR reaction solution was 500 mM KC1, 100 mM Tris-
- the expression level of the human; 8-actin gene in each RNA was also determined by the sense primer specific to human i3-actin (SEQ ID NO: 252:. AGAAGGAGATCACTGCCCTGGCACC) and antisense primers (SEQ ID NO: 253: CCTGCTTGCTGATCCACATCTGCTG) were used for analysis in the same manner as described above.
- the product amplified by the PCR method was subjected to 1.0% agarose gel electrophoresis and then confirmed by ethidium promide staining, or the amount of mRNA was quantified using an iCyclei'Q real-time PCR analysis system (BIO-RAD).
- Gene expression was compared by quantitative RTPCR using RNA prepared from 12 cases of lung adenocarcinoma tissue and 4 cases of normal lung tissue.
- TEG1 gene mRNA was not observed in normal lung tissue, whereas high expression of TEG1 gene was clearly confirmed in 10 of 12 lung adenocarcinoma tissues analyzed (Fig. 1).
- R PCR was performed using RNA prepared from 5 cases of colorectal cancer tissue and normal colorectal tissue as non-cancerous part of the same sample, and RNA prepared from il gastric cancer tissue and normal gastric tissue as non-healing part of the same sample. The gene expression was compared by the method.
- TEG2 gene mRNA was clearly upregulated in 3 out of 5 cases of colorectal cancer and 3 out of 11 cases of gastric cancer analyzed in the cancerous part (Figs. 2 and 3). .
- TEG3 gene mRNA was found to be clearly upregulated in cancerous sites in 9 out of 11 gastric cancers analyzed (FIG. 4).
- RNA prepared from 11 cases of stomach cancer tissue and normal stomach tissue which is a non-cancerous part of the same sample was compared by the RT-PCR method.
- TEG4 gene mRNA was clearly found to be upregulated in the cancerous part in 7 out of 11 gastric cancers analyzed (FIG. 5).
- TEG5 Gene expression was compared by RT-PCR using RNA prepared from 11 cases of stomach cancer tissue and normal stomach tissue as a non-cancerous part of the same sample.
- TEG6 gene mRNA was confirmed to be clearly upregulated in 3 of 9 cases of colorectal cancer analyzed in the cancerous part, and was completely expressed in all normal stomachs analyzed in gastric cancer. In contrast, very strong mRNA expression was confirmed in two cases (FIGS. 7 and 8).
- Gene expression was compared by RPCR using RNA prepared from 11 cases of stomach cancer tissue and normal stomach tissue as a non-cancerous part of the same sample.
- Gene expression was compared by RPCR using RNA prepared from 11 cases of stomach cancer tissue and normal stomach tissue as a non-cancerous part of the same sample.
- Gene expression was compared by RT-PCR using RNA prepared from 11 cases of stomach cancer tissue and normal stomach tissue as a non-cancerous part of the same sample.
- RNA prepared from 11 cases of stomach cancer tissue and normal stomach tissue which is a non-cancerous part of the same Sangare gene expression was compared by R "PCR method.
- TEG11 gene mRNA was clearly found to be upregulated in cancerous sites in 10 out of 11 gastric cancers analyzed (FIG. 13).
- Gene expression was compared by PCR using RNA prepared from 9 cases of liver cancer tissue and non-cancerous part of the same sample.
- Gene expression was compared by PCR using RNA prepared from 9 cases of liver cancer tissue and non-cancerous part of the same sample.
- TEG13 gene mRNA was clearly confirmed to be upregulated in the cancer site in 4 out of 9 cases of liver cancer analyzed (FIG. 15).
- Gene expression was compared by RT-PCR using RNA prepared from 9 cases of liver cancer tissue and non-cancerous part of the same sample.
- Gene expression was compared by PGR method using RNA prepared from 9 cases of liver cancer tissue and non-cancerous part of the same sample.
- RNA prepared from 9 cases of liver cancer tissue and non-cancerous part of the same sample RT- Gene expression was compared by PGR method.
- Gene expression was compared by RTXPCR using RNA prepared from 10 cases of colorectal cancer tissue and normal colorectal tissue as a non-cancerous part of the same sample.
- TEG17 gene mRNA was found to be upregulated in cancerous sites in all of the 10 cases analyzed, and in particular, was clearly highly expressed in 5 cases (FIG. 19).
- Gene expression was compared by RPCR using RNA prepared from 11 cases of stomach cancer tissue and normal stomach tissue as a non-cancerous part of the same sample.
- Gene expression was compared by quantitative RT-PCR using RNA prepared from 12 cases of lung adenocarcinoma tissue and 4 cases of normal lung tissue.
- Gene expression was compared by RPCR using RNA prepared from 11 cases of stomach cancer tissue and normal stomach tissue as a non-cancerous part of the same sample.
- Gene expression was compared by PCR using RNA prepared from 9 cases of liver cancer tissue and non-cancerous part of the same sample.
- TEG22 Gene expression was compared by quantitative RT-PCR using RNA prepared from six cases of colorectal cancer tissue and non-cavity normal colorectal tissue of the same sample.
- TEG22 gene mRNA was found to be upregulated in cancer sites in 3 of 6 cases analyzed (Fig. 24).
- Gene expression was compared by PCR using RNA prepared from 9 cases of liver cancer tissue and non-cancerous part of the same sample.
- Gene expression was compared by RPCR using RNA prepared from 11 cases of stomach cancer tissue and normal stomach tissue as a non-cancerous part of the same sample.
- TEG24 gene mRNA was clearly found to be upregulated in the cancer site in 5 of 11 gastric cancers analyzed (FIG. 26).
- Gene expression was compared by RPCR using RNA prepared from 11 cases of stomach cancer tissue and normal stomach tissue as a non-cancerous part of the same sample.
- TEG25 gene mRNA was clearly found to be upregulated in cancerous sites in ⁇ of 11 gastric cancers analyzed (FIG. 27).
- Gene expression was compared by RPCR using RNA prepared from 11 cases of stomach cancer tissue and non-cave normal stomach tissue of the same sample.
- TEG26 gene mRNA was clearly found to be upregulated in cancerous sites in 4 of 11 gastric cancers analyzed (FIG. 28).
- Gene expression was compared by RT-PCR using RNA prepared from 11 cases of stomach cancer tissue and normal stomach tissue as a non-cancerous part of the same sample.
- Gene expression was compared by quantitative RT-PGR using RNA prepared from 12 cases of lung adenocarcinoma tissue and 4 cases of normal lung tissue.
- Gene expression was compared by quantitative RT-PCR using RNA prepared from 12 cases of lung adenocarcinoma tissue and 4 cases of normal lung tissue.
- Gene expression was compared by quantitative RT-PCR using RNA prepared from 12 cases of lung adenocarcinoma tissue and 4 cases of normal lung tissue.
- TEG34 gene mRNA was found to be upregulated in the cancerous area in 8 out of 11 cases analyzed (FIG. 36).
- Gene expression was compared by RT-PCR using RNA prepared from 11 cases of stomach cancer tissue and normal stomach tissue as a non-cancerous part of the same sample.
- TEG35 gene mRNA was clearly found to be upregulated in cancer sites in 7 of 11 cases analyzed (FIG. 37).
- TEG36 gene mRNA was clearly found to be upregulated in cancerous sites in 8 of 11 cases analyzed (FIG. 38).
- Gene expression was compared by RTHPCR using RNA prepared from 11 cases of stomach cancer tissue and normal stomach tissue as a non-cancerous part of the same sample.
- RNA prepared from 11 cases of stomach cancer tissue and normal stomach tissue which is a non-cancerous part of the same sample was compared by the T-PCR method.
- Gene expression was compared by RT-PCR using RNA prepared from 11 cases of stomach cancer tissue and normal stomach tissue as a non-cancerous part of the same sample.
- TEG41 gene mRNA was clearly confirmed to be upregulated in the cancer site in 4 of 11 cases analyzed (FIG. 43).
- Gene expression was compared by RPCli method using RNA prepared from 11 cases of stomach cancer tissue and normal stomach tissue as a non-cancerous part of the same sample.
- RNA prepared from 11 cases of stomach cancer tissue and normal stomach tissue was compared by the method using RNA prepared from 11 cases of stomach cancer tissue and normal stomach tissue as a non-cancerous part of the same sample.
- Gene expression was compared by PCR using RNA prepared from 9 cases of liver cancer tissue and non-cancerous part of the same sample.
- TEG45 Gene expression was compared by RT-PCR using RNA prepared from 11 cases of liver cancer tissue and non-cancerous part of the same sample.
- TEG45 gene mRNA was found to be clearly upregulated in the cancerous area in ⁇ of 11 cases of liver cancer analyzed (FIG. 47).
- Gene expression was compared by PGR method using RNA prepared from 9 cases of liver cancer tissue and non-cancerous part of the same sample.
- TEG46 gene mRNA showed higher values in the cancerous part in all nine cases of liver cancer analyzed, and remarkably advanced expression in the cancerous part was confirmed in particularly six cases (Fig. 4). 8).
- TEG47 gene mRNA was clearly upregulated in the cancerous part in 8 out of 10 analyzed samples as compared to normal colon tissue (Fig. 49).
- Gene expression was compared by RTWPCR using RNA prepared from 10 cases of colorectal cancer tissue and normal colorectal tissue as a non-cancerous part of the same sample.
- TEG48 gene mRNA was found to be upregulated in cancer in 9 out of 10 cases analyzed (FIG. 50).
- Gene expression was compared by quantitative RT-PCR using RNA prepared from 6 cases of colorectal cancer tissue and normal colorectal tissue as a non-cancerous part of the same sample.
- Gene expression was compared by RT-PCR using RNA prepared from 6 cases of colorectal cancer tissue and normal colorectal tissue as a non-cancerous part of the same sample.
- Gene expression was compared by RPCR using RNA prepared from 6 cases of colorectal cancer tissue and normal colorectal tissue as a non-cancerous part of the same sample.
- TEG51 gene mRNA was not amplified by PCR in any of the normal colon tissues, while TEG51 gene was clearly amplified in 5 of the 6 colorectal cancer tissues analyzed. As a result, it was confirmed that expression was enhanced in colorectal cancer (Fig. 53).
- Gene expression was compared by quantitative RT-PCR using RNA prepared from 12 cases of lung adenocarcinoma tissue and 4 cases of normal lung.
- Gene expression was compared by quantitative PCR using RNA prepared from 8 cases of lung adenocarcinoma tissue and 4 cases of normal lung tissue.
- Gene expression was compared by RTPCR using RNA prepared from 11 cases of stomach cancer tissue and normal stomach tissue as a non-cancerous part of the same sample.
- Gene expression was compared by RT ⁇ PCR using RNA prepared from 11 cases of stomach cancer tissue and normal stomach tissue of non-cancerous part of the same sample.
- Gene expression was compared by PCR using RNA prepared from 9 cases of liver cancer tissue and non-cancerous part of the same sample.
- Gene expression was compared by PCR using RNA prepared from 9 cases of liver cancer tissue and non-cancerous part of the same sample.
- Gene expression was compared by RT-PCR using RNA prepared from 9 cases of liver cancer tissue and non-cancerous part of the same sample.
- Gene expression was compared by RT-PGR method using RNA prepared from 9 cases of hepatoblastoma tissue and 2 cases of normal liver.
- Gene expression was compared by quantitative R "PCR using RNA prepared from 12 cases of lung adenocarcinoma tissue and 4 cases of normal lung tissue.
- Gene expression was compared by quantitative RT-PCR using RNA prepared from 12 cases of lung adenocarcinoma tissue and 4 cases of normal lung tissue.
- Gene expression was compared by PCR using RNA prepared from 9 cases of liver cancer tissue and non-cancerous part of the same sample.
- RNA prepared from 9 cases of liver cancer tissue and non-cancerous part of the same sample was compared by R ′′ PCR method.
- GenBank; BF057073: SEQ ID NO: 254 An EST (GenBank; BU844373) existing near the gene was extracted from GenBank, a primer to be hybridized to each EST, and a primer to be designed were designed and cDNA was amplified by PCR. PCR was performed using single strands of UNA prepared from human liver cancer cell lines Hep3B, HuH6, and HepG2 in equal amounts. Using cDNA as type III, PCR was performed using 5 pmole of each of PCR primers LS557 (ATCCGCCAGG TGAAAGCCAA GTC: SEQ ID NO: 255) and LS589 (GGGATTCACA TTACCACGGC AGTGC: SEQ ID NO: 256).
- the PCR was performed using a LA-PCR kit (Takara Shuzo Co., Ltd.) for 35 cycles consisting of 94 ° C for 30 seconds, 63 ° C for 30 seconds, and 72 ° C for 5 minutes. The band was amplified. After the PCR amplification product was introduced into pGEM-T easy Vector-1 (Promega), the base sequence of the amplified gene was analyzed by a standard method.
- the gene was found to contain a sequence in the upstream region 5 'to the DNA sequence.
- the DNA sequence amplified by PCR is shown in SEQ ID NO: 257.
- PCR was carried out using a PCR primer designed based on another EST sequence (BU859386) considered to be in the vicinity of BF057073 and the sequence of the gene isolated and identified as described above. 5 pmole LS858 for each PCR primer
- LS859 (GAAGACGAGG ATTCGATTGT TGCCAAAGT CCACC: SEQ ID NO: 259)
- a 35-cycle reaction consisting of 95 ° C for 30 seconds and 68 ° C for 3 minutes was performed.
- a band of about 2,500 bp was amplified.
- the PCR amplification product was introduced into the pGEM-T easy vector in the same manner as described above, the nucleotide sequence was identified. As a result, it was revealed that the PCR amplification product further contained the 5'-side sequence.
- the DNA sequence amplified by PCR is shown in SEQ ID NO: 260.
- Rat BERP which has the same structure as TRIM 3 like K # l isolated this time, is localized in the cell, conjugated with myosin V, etc., and is involved in the intracellular transport of proteins. It has been suggested to be involved in the extension of projections (El-Husseini, A et al., Biochem. Biophys. Res. Commun., 267, 906-911, 2000, El. Husseini'A et al., J, Biol. Chem. 274, 19771-19777, 1999). Based on the above, it is thought that the K # l protein identified in this study belongs to the TRIM family, and may be involved in cell morphogenesis and proliferation, etc. by participating in intracellular protein transport etc. like rat BERP. Therefore, it was suggested that it may play an important role in the pathological condition in which the expression of liver cancer and the like is enhanced, and that the drug may be used as an overnight get molecule.
- 5′-RACE analysis was carried out using a SMART RACE cDNA Amplification Kit (Clontech) to identify the sequence on the 5, side from the probe sequence (229349-at_ul33B) in Gene chip analysis.
- a SMART RACE cDNA Amplification Kit (Clontech) to identify the sequence on the 5, side from the probe sequence (229349-at_ul33B) in Gene chip analysis.
- the primer LS900 SEQ ID NO: 262: GGGTTCACTT TGGTCTCTAG TACGG
- the primer LS900 designed based on the sequence of the human EST (GenBank Accession No. AL039884: SEQ ID NO: 261) from which the probe was derived
- Hepatoma cell lines HepG2, HuH6, and Hep.3B Single-stranded cDNA was synthesized from 1000 ng of total RNA mixed with equal amounts of all UNAs according to the method attached to the kit.
- cDNA containing the 5'-side sequence was amplified by PCR. That is, using 1.25 single-stranded cDNA and 5 pmole LS900 as PCR primers, a PCR reaction was performed according to the method attached to the kit. The PCR was first organized at 94 ° C for 1 minute, followed by 35 cycles of a 98-second 10-second, 68 ° C 3-minute cycle, and a 5-minute incubation at 72 ° C. About 5,000 13 ⁇ 4)? 01 product 0 £] ⁇ -6 & 8 vector
- clone-11 or an open reading frame encoding 210 amino acids (clone-18) (Fig. 70, 71).
- the amino acid sequence deduced from clone-11 is shown in SEQ ID NO: 81
- the amino acid sequence deduced from clone-18 is shown in SEQ ID NO: 82. Comparing the amino acid sequences deduced from the two clones obtained this time, clone-11 was found to be 40 amino acids longer N-terminal than clone-18. It was predicted that this could be a different splicing variant of the exon used. Based on the above results, a novel gene whose expression was enhanced in liver cancer cells was isolated'identified and named K # 2.
- LIN-28 has been shown to be a protein involved in the control of cell fate during development by binding to mRNA and participating in translation from mRNA and stability of mRNA (Moss, EG et al.
- K # 2 protein may have a function similar to that of LIN-28, and is involved in the control of human nascent stage, or the development and proliferation of cancer cells, or the replication of viruses such as hepatitis virus. It was expected to give.
- an anti- # 2 antibody was prepared.
- K # 2 cDNA clone-18 was type III
- K # 2 (l-210aa) was obtained by PCR using primer F (SEQ ID NO: 278) and primer R (SEQ ID NO: 279).
- primer F SEQ ID NO: 278
- primer R SEQ ID NO: 279
- pGEM-II vector Promega
- EcoRI-Notl was inserted into pDEST15 (manufactured by Invitrogen) to construct an expression vector pDEST15-K # 2.
- SEQ ID NO: 2 7 8 (F): CACCATGGGATTTGGATTCATCTCCATGAT
- SEQ ID NO: 27 9 (R): TGTCTTTTTCCTTTTTTTTTTTTTTGAACTGAAGGCCCC
- the expression vector pDEST15-K # 2 was prepared in the same manner as above, and the GST-linked antigen protein (k # 2 (l-210aa)) was prepared in the same manner as above, and the K # 2 polyclonal was prepared.
- a rabbit herb antiserum immunized with k # 2 (l-210aa) -GST-fused protein was prepared. That is, 100 pg / 0.5 mL / mouse of K # 2-GST fusion protein suspended in PBS in New Zealand White Heron (10-week-old female, Nippon Clea) was combined with 0.5 mL of Freund's complete adjuvant (DIFCO).
- the emulsion was mixed and administered by subcutaneous injection to perform the first immunization. At intervals of 2 weeks thereafter, 100 pg / 0.5 mL / mouse of K # 2-GST fusion protein suspended in PBS was incomplete Freund's adjuvant. The resulting emulsion was mixed with 0.5 mL of the solution to give an emulsion, and administered by subcutaneous injection to carry out immunization a total of four times. Blood was collected before the immunization, three times, and after the fourth immunization, and the increase in the antibody titer to the K # 2_GST-fused protein was confirmed by ELISA. After confirming an increase in antibody titer, whole blood was collected to obtain K # 2 immunized rabbit herb antiserum. This was designated as anti- # 2 polyclonal antibody.
- # 2 was detected using a cell line of a # 2 forced expression cell line and various cancer cell lines.
- the cDNA encoding the above # 2 was inserted into pcDNA3.1 to obtain a K # 2 gene expression vector pcDNA3.1_K # 2. Then, 1] ig expression vector pcDNA3.1-K # 2 was introduced into 2 x 10 5 HEK293 cells using FuGene6 reagent (manufactured by Roche Diagnostics), and K # 2 was removed. Transient expression.
- the cells were collected, and the cultured cells were cultured in RIPA buffer (150 mM sodium chloride, 1% 4040, 0.5% dexocholic acid, 0.1% SDS, 50 mM trishydroxyaminoaminohydrochloride ( pH8.0)) to prepare a cell lysate.
- RIPA buffer 150 mM sodium chloride, 1% 4040, 0.5% dexocholic acid, 0.1% SDS, 50 mM trishydroxyaminoaminohydrochloride ( pH8.0)
- an anti-C20orfl02 monoclonal antibody was produced.
- cDNA of C20orfl02 was first isolated as follows.
- a single-stranded cDNA was prepared from the lung adenocarcinoma tissue according to the method described above, and used as type ⁇ for primers F (SEQ ID NO: 269) and R (SEQ ID NO: 269) having EcoRI or XhoI restriction enzyme sites.
- SEQ ID NO: 270 primers F (SEQ ID NO: 269) and R (SEQ ID NO: 269) having EcoRI or XhoI restriction enzyme sites.
- SEQ ID NO: 270 a band around about 615 bp that matches the C20orfl02 predicted sequence was successfully detected by PCR.
- the enzymes and reagents for PCR include Advantage HF Polymerase Mix (Clontech), Advantage HF PCR buffer (Advantage HF PCR buffer), and 20 ⁇ deoxynucleotide triphosphate.
- PCR with acid, 0.2 ⁇ primer and cDNA l pL type (94 ° C for 30 seconds, 68 ° C for 30 seconds, 72 ° C for 3 minutes, 35 cycles) was done. Obtained by PCR method The specific amplified fragment obtained was introduced into pGEM-T easy vector (Promega) using a DNA ligation kit (Takara), and the nucleotide sequence was confirmed by a standard method. Was found to correspond to C20orfl02. Primer F was designed to hybridize to the 5'-end of the C20orfl02 gene (GenBank: NM-080607), and R was designed to hybridize to the 3'-end.
- the pGEM-T easy vector containing the PCR product was transformed into a competent cell XL-1 Blue (Stratagene), and 5_bromo-4-chloro-3-3-jS-indolyl-galactopyrano Color selection was performed using Sid (5-Bromo-4-Cliloro-3-Indolyl-] 3 ⁇ Galactopyranoside; X-gal), and only one vector incorporating the PCR product was selected.
- 10 pL of the ligation reaction product was added to the competent cells, and after ice-cooling for 30 minutes, heat-shock at 42 ° C for 45 seconds, followed by ice-cooling for 2 minutes to initiate transformation.
- Plasmid DNA was recovered from a portion of the grown cells by extraction with phenol / cloth form, 0.5 pL of EcoRI (8 UZL), 2 pL of 1 OxH buffer, and 7.5 pL of distilled water. Digestion was performed at 37 ° C for 1 hour. Electrophoresis on a 0.8% agarose gel confirmed that the size of the digest was the same as the size of the desired PCR product.
- the cut gene fragment was recombined into pET41a vector (Novagen), a vector for expressing E. coli protein.
- the gene integrated into pET41 is translated as a GST fusion protein.
- PET41 was digested with restriction enzymes (EcoRI and Xhol), electrophoresed, and purified using a quick gel extraction kit.
- the fragment having the sequence of C20orfl02 amplified by pGEM-Teasy was incorporated into pET41 using a DNA ligation kit.
- the plasmid DNA was transformed into XL-1B1ue, and shaken in an LB medium containing kanamycin for 16 hours to grow the cells. Plasmids were purified from the grown Escherichia coli using a Quantumprep plasmid miniprep kit. In order to confirm the insertion of C20orfl02 into pET41, sequencing was performed with the primers (SEQ ID NOs: 271 and 272) for the sequence possessed by pET.
- SEQ ID NO: 271 TTCGAACGCCAGCACATGGAC
- SEQ ID NO: 272 GCTAGTTATTGCTCAGCGGTG
- C20orfl02 integrated into the pET41 vector was transformed into a competent cell BL21 Codon PLUS RIL (Novagen) having a T7 promoter.
- Transformation was performed according to the following procedure. l O OpL of BL21 Codon PL USR I L was added with 1 pET-C20orfl02-FL at a concentration of 1 pgZpL, and the mixture was ice-cooled for 5 minutes. After that, they were immersed in a constant temperature layer at 42 ° C for 20 seconds and subjected to heat shock. After further cooling on ice for 2 minutes, 900 pL of LB without antibiotics was added, incubated at 37 ° C for 10 minutes, and centrifuged (1000 xg, 5 minutes). After discarding the supernatant, the competent cells were resuspended, spread on an LB plate containing kanamycin, and subjected to selective culture at 37 for 16 hours.
- the GST fusion protein of C20orfl02 expressed using Escherichia coli was purified by affinity purification using the binding between GST and dalhithione.
- Escherichia coli cells were collected by centrifuging the culture at 600 Oxg and 4 ° C for 10 minutes.
- Bacterial lysis A digestion buffer (5 OmM sodium chloride, ImM EDTA, ImM dithiothreitol (DTT), 5 OmM trishydroxyaminomethane hydrochloride, pH 8.0) was added, and sonication was performed on ice.
- Triton X-100 was added to a final concentration of 1%, and the mixture was centrifuged at 1340 Oxg and 4 ° C for 45 minutes to collect the supernatant.
- 500 pL of daltathione Sepharose (manufactured by Amersham Biosciences) was added to the supernatant, and the mixture was mixed by inversion at 4 ° C for 1 hour to adsorb the GST-C20orfl02 fusion protein.
- Collect daltathione sepharose by centrifugation (300 Oxg, 4 ° C, 5 minutes), wash with 1 OmL of PBS-T (PBS containing 0.5 Triton X_100), then elute buffer (5 OmM reduced dalhithione, 20 OmM sodium chloride ImM EDTA, lmMDTT, 20 OmM Tris-HC1, pH 8.0) were added and mixed by inversion at 4 ° C for 1 hour to elute the GST fusion protein. By centrifugation (300 Oxg, 4 ° C, 5 minutes), dalhithion sepharose was removed to obtain a purified GST-fused C20orfl02 protein.
- a mouse with an increased antibody titer was finally immunized with 25 ⁇ l of the mouse, and 72 hours later, spleen cells were collected and fused with myeloma cells (P3ZNS I-1—Ag4-1)
- Mouse ascites was obtained by inoculating a BALB / c mouse with the antibody-producing hybrid.
- the monoclonal antibody in the ascites was purified by ammonium sulfate precipitation to prepare a purified antibody.
- an anti-C20orfl02 antibody H9615 was produced.
- C20orf! 02 protein molecule using C20orfl02 monoclonal antibody To confirm the reactivity of the anti-C20orfl02 monoclonal antibody H9615 prepared as described above, use a C20orfl02 forced expression cell line and various cancer cell lines. C20orfl02 was detected using the cell lysate of this Example.
- the reactivity of the anti-C20orfl02 monoclonal antibody H9615 was confirmed by Western blot analysis using C20orfl02 forced expression COS7 cells.
- the cDNA coding for C20orfl02 is pcDNA4Mys_His
- the lpg expression vector was introduced into 5 ⁇ 10 4 COS7 cells using FuGene6 reagent (manufactured by Roche Diagnostics) to transiently express C20orfl02.
- the cells 3 days after the introduction of the expression vector are collected, and the cultured cells are washed with RIPA buffer (150 mM sodium chloride, 1% ⁇ -40, 0.5% dexcholate, 0.1% SDS, 50 mM trishydroxyaminoaminohydrochloride ( A cell lysate was prepared by solubilization in PH 8.0)).
- the C20orfl02 gene has a secretory signal as a predicted sequence, it was confirmed whether or not secretory C20orfl02 could be detected in the culture supernatant in a C20orfl02-expressing cancer cell line.
- a band having the same molecular weight as that of the culture supernatant of the forced expression cells was detected by the anti-C20orfl02 monoclonal antibody (Fig. 74).
- a 15% polyacrylamide gel was prepared, an extract sample was applied at 10 pg each, and SDS-PAGE was performed.
- a Western blot analysis was carried out using the anti-C20orfl02 monoclonal antibody H9615 in the same manner as described above, a specific band around 22.5 kDa was specifically detected in the cancerous part (FIG. 75).
- TEG6 For OK / SW-CL..30, to determine whether it is possible to detect cancer using anti-OK / SW-CL..30 antibody, Fabrication was performed. 8- 1. Isolation of hNotum cDNA
- hNotum Since it showed a homology of 42.7% with (NM-168642), it was named hNotum as a novel gene, and the following analysis was performed.
- the hNotum cDNA was isolated as follows. Prepare single-stranded cDNA from HepG2 cells according to the method described above, convert it to type I, and use primers WT164 (SEQ ID NO: 275) and LS746 (SEQ ID NO: 276) to perform PCR on hNotum. A band around 1.5 kbp consistent with the predicted sequence was successfully detected.
- DMSO equivalent to 5% of the total reaction solution was added to the reaction solution prepared according to the protocol of the KOD plus kit (manufactured by TOYOBO).
- the primer WT164 was designed to hybridize to the 5'-end of the hNotum gene (GenBank: NM-178493), and LS746 was designed to hybridize to the 3'-end.
- SEQ ID NO: 27 (WT164): CACCGAATTCATGGGCCGAGGGGTGCGCGTG SEQ ID NO: 27 (LS746): CTCGAGGCTTCCGTTGCTCAGCATCCCCAG 8-2.
- Amino acid partial sequence (143aa-496aa) was GS-conjugated as an antigen for hNotum immunization. Recombinants were prepared as combined proteins. That is, the above hNotm cDNA was transformed into type I, and the gene encoding hNotum (I43aa-496aa) was amplified by PCR using LS695 primer 1 (SEQ ID NO: 277) and LS746 (SEQ ID NO: 276). Subsequently, insertion into pGEM-T Easy Vector-1 (Promega) was performed. After confirming the nucleotide sequence by a conventional method, the gene fragment cut with the restriction enzyme EcoM-XhoI was inserted into pET41a vector-1 (Novagen) to construct an expression vector.
- SEQ ID NO: 277 (LS695): Preparation of GAATTCATGCGGCGCCTCATGAGCTCCCGGGA GST fusion antigen protein (including hNortmn 143aa-496aa) and preparation of a monoclonal antibody by mouse immunization were performed in the same manner as described above. As a result, the hNotum monoclonal antibody H9541 was prepared.
- Example 9 the hNotum monoclonal antibody H9541 was prepared.
- hNotmn was detected using cell lysates of hNotum forced expression cell lines and various cancer cell lines.
- a vector having the above-described antigen site 143aa-496aa inserted into pcDNA4 was used as a control.
- the predicted molecular weight is 39.9kDa.
- Western plot analysis was performed in the same manner as above, and the primary antibody H9541 was performed at a final concentration of 100 g / mL.
- the hNotum gene has a secretory signal as a predicted sequence, it was confirmed whether hNotum expressing hNotum could be detected in the culture supernatant in cancer cell lines expressing hNotum.
- a band having the same molecular weight as that of the culture supernatant of the forced expression cells was detected by the anti-hNotum antibody (FIG. 76). From the above results, it was revealed that the hNotum monoclonal antibody H9541 can specifically detect hNotum, and that the degree of mRNA expression by GeneChip analysis matches the degree of hNotum protein expression.
- an anti-KIAA1359 antibody was prepared in order to clarify whether cancer could be detected using the anti-KIAA1359 antibody. That is, a peptide sequence was synthesized by a conventional method using a partial sequence of amino acids (76 aa to 88 aa) as an antigen for immunization of KIAA1359 as a peptide protein.
- C A cysteine residue was added to the N-terminus of the peptide and conjugated to Keyhole limpet hemocyanin (KLH) to obtain an immunogen.
- KLH Keyhole limpet hemocyanin
- the monoclonal antibody was used in the same manner as described above. Then, the monoclonal antibody A8409A was successfully isolated.
- PEAETRGAKRISPA SEQ ID NO: 280
- cDNA of KIAA1359 was first isolated as follows. A single-stranded cDNA was prepared from MKN74 cells, which are KIAA1359 expressing cells, according to the method described above, and the resulting single-stranded cDNA was subjected to PCR using primers F (SEQ ID NO: 28 1) and R (SEQ ID NO: 28 2) as a ⁇ -type. A band around 1.6 kbp, which coincides with the predicted sequence of KIAA1359, was successfully detected. PCR method is Advanvtede HF2 kit
- NM_152673 was designed to hybridize to the 5'-end, and R was designed to hybridize to the 3'-end.
- SEQ ID NO: 28 1 (F) i GGATCCATGGGCTGTCTCTGGGGTCTGGCTCTGC SEQ ID NO: 28 2 (R): CTCGAGGCCTCTCCTGACACGCAGTAAGGAGACC 11-3.
- TEG60 PEG10 is translated by ordinary codon message and ORF1 and a frame shift occurs in the termination codon region of ORF1, and the presence of newly translated ORF2 was confirmed by Shigemoto et al., Nucleic Acids Research, 29, 4079-4088, 2001.
- Mouse PEG10, or a prediction from the genomic sequence of human PEG10 in Ono et al., Genomics, 73, 232-237, 2001 suggests that experimental proof of ORF2 for human PEG10 was found. Not. Therefore, we tested the ORF2 amino acid sequence based on the predicted ORF2 amino acid sequence to prove whether frameshifting of the ORF2 part actually occurred and whether the newly translated region was present in the healing tissue. An attempt was made to produce and prove PEG10 / ORF2 monoclonal antibody.
- cDNA of PEG10 was first isolated as follows.
- a single-stranded cDNA was prepared from human fetal liver tissue according to the method described above, and used as a template to predict PEG10 by PCR using primers F1 (SEQ ID NO: 284) and R1 (SEQ ID NO: 285).
- a band around 2200 kbp corresponding to the sequence was successfully detected.
- the PCR method consists of preparing a reaction solution according to the protocol of the Advantage2 cDNA PCR kit (Clontech), first performing primary denaturation at 94 ° C for 1 minute, then 30 seconds at 94 ° C and 3 minutes at 68. After 35 cycles, the last extension reaction was performed at 68 ° C for 10 minutes.
- the specific amplified fragment obtained by the PCR method was inserted into pGEM-T easy (Promega) by the TA cloning method, and the nucleotide sequence was confirmed by a standard method. It was clear that the isolated cDNA was PEG10. It became.
- the primer F1 was designed to hybridize to the 5- and -ends of the PEG10 gene (GenBank: AB049834), and R1 was designed to hybridize to the 3'-end. ""
- PEG10 (ORF2 / 51aa-251aa) is encoded by PCR using F2 primer (SEQ ID NO: 286) and R2 primer (SEQ ID NO: 287) with the above PEG10 cDNA as type II.
- the gene was amplified, and then inserted into pGEM'T easy vector (Promega). After confirming the nucleotide sequence by a standard method, the gene fragment digested with the restriction enzyme BamHI-XhoI was inserted into the pET41c vector.
- SEQ ID NO: 2 8 7 (R2): CTCGAGTGCCATTTCAGGTTCGGACAGTG
- PEG10 was detected using a cell lysate of a PEG10 forced expression cell line and various cancer cell lines.
- the reactivity of the anti-PEG10 / ORF2 antibody B0000A was confirmed by Western blot analysis using PEG10 forced expression COS7 cells.
- the PEG10 gene expression vector pcDNA4 / HisMax-PEGIO-Full in which the cDNA encoding the full-length PEG10 described above was inserted into pcDNA4HisMaxC (Invitrogen), was used. It is a construct in which an Xpress tag sequence has been inserted into the N-terminal of PEG10.
- lpg expression vector pcDNA4 / HisMax-PEG10-Full, or pcDNA4 (Mock) as a negative control was added to 5 x 10 4 COS7 cells and Hep3B cells using FuGene6 reagent (Roche Diagnostics, Inc.). ) was used to transiently express PEG10.
- RIPA buffer 150 mM sodium chloride, 1% NP'40, 0.5% dexcholate, 0.1% SDS, 50 mM trishydroxyaminomethane hydrochloride.
- TEG63 DUSP9
- anti-DUSP9 antibody was produced to clarify whether it is possible to detect cancer using a monoclonal antibody.
- Recombinants were prepared using the DUSP9 full-length sequence as a GST-fused protein as an antigen for DUSP9 immunization. That is, HepG2 cDNA was transformed into type II, and Ls772 A gene encoding DUSP9 (385aa) was amplified by PCR using Lima-1 (SEQ ID NO: 288) and Ls773 primer (SEQ ID NO: 289), followed by pGEM-Te vector (Promega). ). After confirming the nucleotide sequence by a conventional method, the gene fragment cut with the restriction enzyme EcoRI-Hindlll was inserted into pET41a vector (Novagen) to construct an expression vector pET41a_DUSP9. SEQ ID NO: 2 8 8 (F): GAATTCATGGAGGGTCTGGGCCGCTC
- GST-fused DUSP9 (1-385aa) protein was prepared in the same manner as described above using the expression vector pET41a-DUSP9, and a monoclonal antibody was prepared by mouse immunization. Then, an anti-DUSP9 antibody # 8901 was prepared.
- DUSP9 was detected using DUSP9 forced expression cell lines and cell lysates of various cancer cell lines.
- the animal cell expression vector used was a DUSP9 gene expression vector pcDNA4-DUSP9 in which cDNA encoding DUSP9 was inserted into pcDNA4Mys-His (Invitrogen). That is, 1 expression vector pcDNA4-DUSP9 was introduced into 5 ⁇ 10 4 COS7 cells using FuGene6 reagent (Roche Diagnostics) to transiently express DUSP9.
- the cells three days after the introduction of the expression vector are collected, and the cultured cells are cultured in RIPA buffer (150 mM sodium chloride, 1% ⁇ -40, 0.5% dexcholate, 0.1% SDS, 50 mM trishydroxyaminoaminohydrochloride (The cell lysate was prepared by solubilization at pH 8.0)). The lysate equivalent to 3 mg protein was applied to an SDS-polyacrylamide gel, proteins were separated by SDS-PAGE, and then transferred to Hybond-P (Amersham Biosciences).
- DUSP9 antibody (l ng / mL) as the primary antibody and HRP-labeled anti-mouse IgG antibody (Jackson) as the secondary antibody
- ECL Plus Amplitude-labeled anti-mouse IgG antibody
- CystatinSN an anti-CystatinSN antibody was prepared in order to clarify whether cancer can be detected using the anti-CystatinSN antibody.
- a peptide sequence was synthesized by a conventional method using a partial sequence of amino acids (60 aa to 75 aa) as a peptide protein as an antigen for immunization of Cystatin SN (see GenBank No .: NM_001898).
- C cysteine residue to N-terminal of peptide, conjugate to Keyhole limpet hemocyanin (KLH) and immunogen
- KLH Keyhole limpet hemocyanin
- the monoclonal antibody was prepared in the same manner as described above. They succeeded in isolating a monoclonal antibody.
- Western blot analysis was performed using an anti-Cystatin SN antibody using a colon cancer tissue extract. Preparation of human tissue extract and Western blot analysis were performed as described above. Western blot analysis with anti-Cystatin SN antibody (4 g / mL) revealed a specific band around 15 kDa, specifically in the cancerous area.
- anti-SFRP4 antibody was produced to clarify whether cancer can be detected using the anti-SFRP4 antibody.
- cDNA of SFRP4 was isolated as follows.
- a single-stranded cDNA was prepared from gastric cancer tissue according to the method described above, and used as type III primers GC898 (SEQ ID NO: 291) and GC899 (SEQ ID NO: 292) with EcoRI or Xhol restriction enzyme sites.
- GC898 SEQ ID NO: 291
- GC899 SEQ ID NO: 292
- Enzymes and reagents for PGR include Advantage HF Polymerase Mix (Clontech) and Advantage HF PCR buffer, 20 ⁇ l deoxynucleotide triphosphate, Perform PCR (94 ° C for 30 seconds, 68 ° C for 30 seconds, 72C for 3 minutes, and 35 cycles) using a 0.2 ⁇ primer to convert the DNA pL into a type.
- Specific amplification fragments obtained by the PCR method were analyzed using a DNA ligase kit (Yukara Co., Ltd.) using the pGEM-T easy vector. -(Promega), and the nucleotide sequence was confirmed by a standard method. As a result, it was found that the isolated cDNA corresponded to SFRP4.
- the primer GC898 was designed to hybridize to the 5-end of the SFR4-ORF gene (GenBank: NM_003014), and the GC899 was designed to hybridize to the 3-end.
- Recombinants were prepared using the full-length SFRP4 sequence as a GST-linked protein as an antigen for immunizing SFRP4. That is, the SFRP4 sequence inserted into the above pGEM-T was digested with the restriction enzyme EcoRI-XhoI, and inserted into pET41a Yuichi (Novagen) to express the expression vector GS SFRP4. It was constructed.
- SFRP4j cDNA4His-Myc (Invitrogen 3 ⁇ 4) was forcibly expressed in COS7 cells, and Western plot analysis was performed with an anti-Myc antibody (5,000-fold dilution, Invitrogen) against the cell lysate. Bands of the same size were detected (Fig. 88). Therefore, the band of 50 kDa detected by the anti-SFRP4 monoclonal antibody in the clinical sample was considered to be SFRP4, and it was clarified that SFRP4 was specifically detected in cancerous areas by the monoclonal antibody.
- SFRP4j cDNA4His-Myc
- genes, proteins and antibodies of the present invention can be used in the diagnosis and treatment of cancer, and in the development of therapeutic agents for cancer.
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AT04771625T ATE528397T1 (de) | 2003-08-08 | 2004-08-06 | Bei krebs überexprimiertes gen |
JP2005513023A JP4643450B2 (ja) | 2003-08-08 | 2004-08-06 | 癌高発現遺伝子 |
US10/568,471 US20080153104A1 (en) | 2003-08-08 | 2004-08-06 | Gene Overexpressed in Cancer |
EP04771625A EP1652923B1 (en) | 2003-08-08 | 2004-08-06 | Gene overexpressed in cancer |
US11/584,793 US20070037204A1 (en) | 2003-08-08 | 2006-10-20 | Gene overexpressed in cancer |
US12/229,750 US7812128B2 (en) | 2003-08-08 | 2008-08-26 | Gene overexpressed in cancer |
US12/384,165 US9434775B2 (en) | 2003-08-08 | 2009-04-01 | Gene overexpressed in cancer |
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Also Published As
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JP2011015681A (ja) | 2011-01-27 |
ATE528397T1 (de) | 2011-10-15 |
US20080153104A1 (en) | 2008-06-26 |
JPWO2005014818A1 (ja) | 2006-10-05 |
EP1652923A4 (en) | 2006-07-26 |
JP4643450B2 (ja) | 2011-03-02 |
EP1652923A1 (en) | 2006-05-03 |
EP1652923B1 (en) | 2011-10-12 |
EP2311468A1 (en) | 2011-04-20 |
EP2311468B1 (en) | 2014-01-15 |
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