WO1999029703A2 - Isolation of nucleic acids - Google Patents

Isolation of nucleic acids Download PDF

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Publication number
WO1999029703A2
WO1999029703A2 PCT/GB1998/003602 GB9803602W WO9929703A2 WO 1999029703 A2 WO1999029703 A2 WO 1999029703A2 GB 9803602 W GB9803602 W GB 9803602W WO 9929703 A2 WO9929703 A2 WO 9929703A2
Authority
WO
WIPO (PCT)
Prior art keywords
solid phase
nucleic acids
dna
solid
blood
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/GB1998/003602
Other languages
English (en)
French (fr)
Other versions
WO1999029703A3 (en
Inventor
Matthew John Baker
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
DNA Research Innovations Ltd
Original Assignee
DNA Research Instruments Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Family has litigation
First worldwide family litigation filed litigation Critical https://patents.darts-ip.com/?family=26312726&utm_source=google_patent&utm_medium=platform_link&utm_campaign=public_patent_search&patent=WO1999029703(A2) "Global patent litigation dataset” by Darts-ip is licensed under a Creative Commons Attribution 4.0 International License.
Priority claimed from GBGB9725839.6A external-priority patent/GB9725839D0/en
Priority claimed from GBGB9815541.9A external-priority patent/GB9815541D0/en
Priority to DE69805649T priority Critical patent/DE69805649T2/de
Priority to BR9815569-5A priority patent/BR9815569A/pt
Priority to AU13447/99A priority patent/AU755342B2/en
Application filed by DNA Research Instruments Ltd filed Critical DNA Research Instruments Ltd
Priority to KR1020007006123A priority patent/KR20010032806A/ko
Priority to AT98957019T priority patent/ATE218140T1/de
Priority to HK01105089.0A priority patent/HK1034520B/xx
Priority to EP98957019A priority patent/EP1036082B1/en
Priority to DK98957019T priority patent/DK1036082T3/da
Priority to JP2000524296A priority patent/JP2004501054A/ja
Priority to CA002318306A priority patent/CA2318306A1/en
Publication of WO1999029703A2 publication Critical patent/WO1999029703A2/en
Publication of WO1999029703A3 publication Critical patent/WO1999029703A3/en
Priority to NO20002540A priority patent/NO315323B1/no
Anticipated expiration legal-status Critical
Priority to US09/736,632 priority patent/US6914137B2/en
Priority to US10/232,135 priority patent/US20030008320A1/en
Priority to US10/232,971 priority patent/US20030054395A1/en
Priority to US10/300,990 priority patent/US20030130499A1/en
Priority to US11/761,956 priority patent/US20070231892A1/en
Priority to US12/137,125 priority patent/US20080305528A1/en
Priority to US13/361,815 priority patent/US20120196944A1/en
Priority to US13/447,130 priority patent/US20120197009A1/en
Priority to US13/898,400 priority patent/US20130338245A1/en
Ceased legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1003—Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor
    • C12N15/1006—Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor by means of a solid support carrier, e.g. particles, polymers
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1003—Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1003—Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor
    • C12N15/1006—Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor by means of a solid support carrier, e.g. particles, polymers
    • C12N15/101—Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor by means of a solid support carrier, e.g. particles, polymers by chromatography, e.g. electrophoresis, ion-exchange, reverse phase

Definitions

  • the present invention relates to a method for extracting nucleic acids and other biomolecules from biological material, particularly blood.
  • Samples for use for DNA identification or analysis can be taken from a wide range of sources such as biological material such as animal and plant cells, faeces, tissue etc. also samples can be taken from soil, foodstuffs, water etc.
  • a method for the extraction of biomolecules from biological material comprises contacting the biological material with a solid phase which is able to bind the biomolecules to it at a first pH and then extracting the biomolecules bound to the solid phase by elution using an elution solvent at a second pH.
  • the method is particularly useful if the biological material is blood, but the method can be used for a range of applications substances such as Plasmid and vector isolation and plant DNA extraction.
  • the cells in the blood are lysed to release nucleic acids and known lysing agents and methods can be used, such as contacting with ionic and non ionic detergents, hypotonic solutions of salts, proteases, chaotropic agents, solvents, using pH changes or heat.
  • lysing agents and methods can be used, such as contacting with ionic and non ionic detergents, hypotonic solutions of salts, proteases, chaotropic agents, solvents, using pH changes or heat.
  • a method of lysing cells to isolate nucleic acid is described in WO 96/00228.
  • the samples can optionally be diluted with water or other diluent in order to make it easier to manipulate and to process.
  • Dilutions up to ten times can be used and in general more dilution can be better and it is a feature of the present invention that it allows low dilution of blood to be possible.
  • the solid phase with which the blood is contacted can be a formed of a material which has a natural affinity for nucleic acids or it can be formed of a material which has its surface treated with an agent which will cause nucleic acids to bind to it or increase its affinity for nucleic acids.
  • Suitable materials include controlled pore glass, polysaccharide (agarose or cellulose), other types of silica/glass, ceramic materials, porous plastic materials such as porous plastic plugs which in a single moulded part or as an insert in a standard tube, polystyrene beads para magnetic beads etc.
  • the size and porosity is not critical and can vary and be selected for particular applications.
  • Suitable means for treating the surface of the solid phase or for derivitising it include treating it with a substance which can introduce a charge e.g. a positive charge on the surface or a hydrophilic or hydrophobic surface on the solid phase e.g. hydroxyl groups, nitrate groups, autoreactive groups, dyes and other aromatic compounds.
  • a substance which can introduce a charge e.g. a positive charge on the surface or a hydrophilic or hydrophobic surface on the solid phase e.g. hydroxyl groups, nitrate groups, autoreactive groups, dyes and other aromatic compounds.
  • the solid phase will cause DNA to be bound to it at one pH in preference to contaminants in the blood sample and will allow the bound nucleic acid to be released when it is contacted with an eluant at a different pH.
  • This system can be used with a solid phase which incorporates histidine or a polyhistidine which will tend to bind nucleic acids at low pH e.g. less than 6 and will then release the bound nucleic acids when the pH is increased e.g. to greater than 8.
  • the nucleic acids are bound at substantially neutral pH to an arninated surface and released at very high pH.
  • a plastic moulding can incorporate a binding agent e.g. in a well in a plate etc. so that the binding agent is incorporated in the surface, the blood sample is then contacted with the surface so as to cause nucleic acids to be bound to the surface. The blood sample is then removed and the surface treated with an eluting agent to release the bound nucleic acids.
  • a binding agent e.g. in a well in a plate etc.
  • the total system can be readily adapted for rapid large scale sampling and extraction techniques.
  • Binding agents which can be used include charge switchable ion exchange resins using a positively charged solid phase that can be reversed or made neutral by changing the pH above its pKa. e.g. nucleotides, polyamines, imidazole groups and other similar reagents with a suitable pKa value. Also, nucleic acids can be bound by intercalation using a variety of intercalating compounds incorporated into the solid phase e.g. Actinomycin D, Ethidium Bromide etc.
  • a plastic surface can be modified to include functional groups.
  • the plastic can be any plastic used for containing samples e.g. polypropylene.
  • the functional groups can be positively or negatively charged so as to bind the nucleic acids in the correct buffer solution.
  • the functional groups can be chemical groups capable of covalent coupling to other ligands or polymers.
  • the surface characteristics of the plastic can be suitably modified for use in the present invention by including or adding the appropriate chemicals in the moulding compound e.g. as in an injection moulding compound.
  • the tubes or wells can be used to isolate and immobilise small quantities of DNA or RNA generating a pure template for subsequent PCR or other genetic analysis and manipulation.
  • the plastic is polypropylene e.g. it is in the form of a thin walled PCR tube
  • the polypropylene surface can be modified by oxidising the surface with an oxidising agent such as potassium permanganate and sulphuric acid to create a carboxylated surface (COOH groups).
  • an oxidising agent such as potassium permanganate and sulphuric acid
  • This tube can then be used to improve the isolation of DNA from solutions or from crude samples e.g. blood.
  • pH, di-electric constant, solubility or ionic strength the DNA or RNA can be immobilised on the walls of the tube, washed free of contaminants, ready for PCR or other analytical techniques.
  • the carboxy groups can be further modified by covalently coupling an anionic group such as imidazole or polyhistidine or any strong or weak ion exchanger, to allow binding of nucleic acids by a charge interaction.
  • an anionic group such as imidazole or polyhistidine or any strong or weak ion exchanger
  • This tube could then be used to improve the isolation of DNA from solutions or from crude samples e.g. of blood. Again by adjusting the pH, di-electric constant, or ionic strength the DNA or RNA can be immobilised on the walls of the tube, washed free of contaminants, ready for PCR or other analytical techniques.
  • the nucleic acids can be eluted with in a low salt buffer so that it is ready for PCR or other analysis.
  • the solid phase can be contacted with a blood sample by mixing with the solid phase in a mixing/ stirring device, by passing the blood sample over the solid phase or the solid phase can be paramagnetic and manipulated by a magnetic field.
  • the invention is particularly suitable for the separation or isolation of nucleic acids from blood it can be used with a range of biomolecules particularly those that require removal of cell wall debris or insoluble particles.
  • the solid phase is in granular form in a column and the blood sample is drawn up through the column by means of a pressure differential being applied through the column, the blood sample is drawn up with air and the granular solid material can become fluidised thus increasing the mixing and contacting rates and minimising clogging.
  • the method of the invention is suitable for use in a multi-well format when a series of extractions from different samples can take place substantially simultaneously and this will facilitate the automation of the extraction process allowing rapid high throughput extraction to take place and to allow combinational chemistry to be performed. This will enable there to be a high throughput in a standard well array e.g. an eight by twelve array so that a large number of sample types can be treated automatically at the same time.
  • a charge switchable ion-exchanger was prepared by covalently coupling polyhistidine to 100 (m glass beads using glutaldehyde by mixing 1 gram of the aminated glass beads with 0.01 %(v/v) glutaldehyde in O.1M sodium bicarbonate at pH8 containing 20mg polyhistidine. After overnight incubation the beads were washed exhaustively to remove non-covalently bound material and stored in lOmM MES, pH5 containing 0.1 % (v/v) Tween 20.
  • a blood sample was incubated with an equal volume of lOmM MES pH5, containing 1% Tween 20, proteases (200(g/ml) and 1 mM EDTA. After digestion is complete the blood was sucked up the column containing the glass beads and the DNA became immobilised allowing the contaminating proteins to pass through to waste.
  • the glass beads containing the immobilised DNA were washed with a buffer comprising lOmM MES pH5, containing 1% Tween 20, and ImM EDTA and this was repeated until the wash solution was colourless.
  • the beads were dried with air and DNA eluted with a small quantity of lOmM Tris HCI, pH 8.5 and collected in a sterile tube ready for analysis. Thus the DNA were separated from the blood.
  • Example 2 For different biomolecules, the buffer etc. can be suitably modified.
  • Example 2 For different biomolecules, the buffer etc. can be suitably modified.

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  • Chemical & Material Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Biomedical Technology (AREA)
  • Genetics & Genomics (AREA)
  • Biotechnology (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • Analytical Chemistry (AREA)
  • Molecular Biology (AREA)
  • Plant Pathology (AREA)
  • Microbiology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Medicines Containing Material From Animals Or Micro-Organisms (AREA)
  • Saccharide Compounds (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
PCT/GB1998/003602 1997-12-06 1998-12-04 Isolation of nucleic acids Ceased WO1999029703A2 (en)

Priority Applications (20)

Application Number Priority Date Filing Date Title
CA002318306A CA2318306A1 (en) 1997-12-06 1998-12-04 Isolation of nucleic acids
JP2000524296A JP2004501054A (ja) 1997-12-06 1998-12-04 核酸の単離
DK98957019T DK1036082T3 (da) 1997-12-06 1998-12-04 Isolering af nucleinsyrer
BR9815569-5A BR9815569A (pt) 1997-12-06 1998-12-04 Método para extração de biomoléculas de material biológico
AU13447/99A AU755342B2 (en) 1997-12-06 1998-12-04 Isolation of nucleic acids
DE69805649T DE69805649T2 (de) 1997-12-06 1998-12-04 Isolierung von nukleinsäuren
KR1020007006123A KR20010032806A (ko) 1997-12-06 1998-12-04 핵산 분리방법
AT98957019T ATE218140T1 (de) 1997-12-06 1998-12-04 Isolierung von nukleinsäuren
HK01105089.0A HK1034520B (en) 1997-12-06 1998-12-04 Isolation of nucleic acids
EP98957019A EP1036082B1 (en) 1997-12-06 1998-12-04 Isolation of nucleic acids
NO20002540A NO315323B1 (no) 1997-12-06 2000-05-16 Isolering av nukleinsyrer
US09/736,632 US6914137B2 (en) 1997-12-06 2000-12-14 Isolation of nucleic acids
US10/232,135 US20030008320A1 (en) 1997-12-06 2002-08-29 Isolation of nucleic acids
US10/232,971 US20030054395A1 (en) 1997-12-06 2002-08-30 Isolation of nucleic acids
US10/300,990 US20030130499A1 (en) 1997-12-06 2002-11-21 Isolation of nucleic acids
US11/761,956 US20070231892A1 (en) 1997-12-06 2007-06-12 Isolation of nucleic acids
US12/137,125 US20080305528A1 (en) 1997-12-06 2008-06-11 Isolation of nucleic acids
US13/361,815 US20120196944A1 (en) 1997-12-06 2012-01-30 Isolation of nucleic acids
US13/447,130 US20120197009A1 (en) 1997-12-06 2012-04-13 Isolation of nucleic acids
US13/898,400 US20130338245A1 (en) 1997-12-06 2013-05-20 Isolation of nucleic acids

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
GBGB9725839.6A GB9725839D0 (en) 1997-12-06 1997-12-06 Isolation of nucleic acids
GB9725839.6 1997-12-06
GBGB9815541.9A GB9815541D0 (en) 1998-07-17 1998-07-17 Isolation of nucleic acids
GB9815541.9 1998-07-17

Related Child Applications (3)

Application Number Title Priority Date Filing Date
US09586009 A-371-Of-International 1998-12-04
US58600900A Continuation 1997-12-06 2000-06-02
US09/736,632 Continuation-In-Part US6914137B2 (en) 1997-12-06 2000-12-14 Isolation of nucleic acids

Publications (2)

Publication Number Publication Date
WO1999029703A2 true WO1999029703A2 (en) 1999-06-17
WO1999029703A3 WO1999029703A3 (en) 1999-08-26

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ID=26312726

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/GB1998/003602 Ceased WO1999029703A2 (en) 1997-12-06 1998-12-04 Isolation of nucleic acids

Country Status (15)

Country Link
US (1) US20030130499A1 (https=)
EP (2) EP1036082B1 (https=)
JP (2) JP2004501054A (https=)
KR (2) KR20050088164A (https=)
CN (1) CN1230440C (https=)
AT (2) ATE386044T1 (https=)
AU (1) AU755342B2 (https=)
BR (1) BR9815569A (https=)
CA (1) CA2318306A1 (https=)
DE (2) DE69805649T2 (https=)
DK (1) DK1036082T3 (https=)
ES (2) ES2177093T3 (https=)
NO (1) NO315323B1 (https=)
PT (1) PT1036082E (https=)
WO (1) WO1999029703A2 (https=)

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JP2003510254A (ja) * 1999-09-21 2003-03-18 スリーエム イノベイティブ プロパティズ カンパニー 核酸単離方法およびキット
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WO2006017428A3 (en) * 2004-08-03 2006-10-26 Becton Dickinson Co Use of magnetic material to direct isolation of compounds and fractionation of multipart samples
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AU1344799A (en) 1999-06-28
JP2004501054A (ja) 2004-01-15
DE69839133T2 (de) 2009-02-05
CA2318306A1 (en) 1999-06-17
ATE218140T1 (de) 2002-06-15
DE69839133D1 (de) 2008-03-27
NO315323B1 (no) 2003-08-18
EP1234832A3 (en) 2003-08-13
DK1036082T3 (da) 2002-08-12
EP1234832A2 (en) 2002-08-28
PT1036082E (pt) 2002-10-31
EP1036082A2 (en) 2000-09-20
DE69805649D1 (de) 2002-07-04
ES2177093T3 (es) 2002-12-01
CN1281462A (zh) 2001-01-24
KR20010032806A (ko) 2001-04-25
BR9815569A (pt) 2001-10-09
ES2301581T3 (es) 2008-07-01
JP2010162037A (ja) 2010-07-29
HK1034520A1 (en) 2001-10-26
CN1230440C (zh) 2005-12-07
KR20050088164A (ko) 2005-09-01
NO20002540D0 (no) 2000-05-16
AU755342B2 (en) 2002-12-12
NO20002540L (no) 2000-07-07
EP1234832B1 (en) 2008-02-13
US20030130499A1 (en) 2003-07-10
ATE386044T1 (de) 2008-03-15
WO1999029703A3 (en) 1999-08-26
EP1036082B1 (en) 2002-05-29

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