DE60335116D1 - Verfahren zum nachweis von sequenzunterschieden - Google Patents

Verfahren zum nachweis von sequenzunterschieden

Info

Publication number
DE60335116D1
DE60335116D1 DE60335116T DE60335116T DE60335116D1 DE 60335116 D1 DE60335116 D1 DE 60335116D1 DE 60335116 T DE60335116 T DE 60335116T DE 60335116 T DE60335116 T DE 60335116T DE 60335116 D1 DE60335116 D1 DE 60335116D1
Authority
DE
Germany
Prior art keywords
nucleotide
identity
primer extension
genotyping
polymorphic
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Expired - Lifetime
Application number
DE60335116T
Other languages
English (en)
Inventor
Vladimir I Slepnev
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Qiagen Mansfield Inc
Original Assignee
PrimeraDx Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by PrimeraDx Inc filed Critical PrimeraDx Inc
Application granted granted Critical
Publication of DE60335116D1 publication Critical patent/DE60335116D1/de
Anticipated expiration legal-status Critical
Expired - Lifetime legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/6858—Allele-specific amplification
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P19/00—Preparation of compounds containing saccharide radicals
    • C12P19/26—Preparation of nitrogen-containing carbohydrates
    • C12P19/28—N-glycosides
    • C12P19/30—Nucleotides
    • C12P19/34—Polynucleotides, e.g. nucleic acids, oligoribonucleotides
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
    • C12Q2525/10—Modifications characterised by
    • C12Q2525/155—Modifications characterised by incorporating/generating a new priming site
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2535/00—Reactions characterised by the assay type for determining the identity of a nucleotide base or a sequence of oligonucleotides
    • C12Q2535/125—Allele specific primer extension
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2537/00—Reactions characterised by the reaction format or use of a specific feature
    • C12Q2537/10—Reactions characterised by the reaction format or use of a specific feature the purpose or use of
    • C12Q2537/143—Multiplexing, i.e. use of multiple primers or probes in a single reaction, usually for simultaneously analyse of multiple analysis
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2565/00—Nucleic acid analysis characterised by mode or means of detection
    • C12Q2565/10—Detection mode being characterised by the assay principle
    • C12Q2565/125—Electrophoretic separation

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Molecular Biology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Genetics & Genomics (AREA)
  • Microbiology (AREA)
  • General Health & Medical Sciences (AREA)
  • Biotechnology (AREA)
  • General Engineering & Computer Science (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Biochemistry (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Biophysics (AREA)
  • Immunology (AREA)
  • General Chemical & Material Sciences (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Investigating Or Analysing Materials By The Use Of Chemical Reactions (AREA)
  • Manufacture, Treatment Of Glass Fibers (AREA)
  • Analysing Materials By The Use Of Radiation (AREA)
DE60335116T 2002-06-28 2003-06-20 Verfahren zum nachweis von sequenzunterschieden Expired - Lifetime DE60335116D1 (de)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US39233102P 2002-06-28 2002-06-28
PCT/US2003/019576 WO2004003136A2 (en) 2002-06-28 2003-06-20 Methods of detecting sequence differences

Publications (1)

Publication Number Publication Date
DE60335116D1 true DE60335116D1 (de) 2011-01-05

Family

ID=30000848

Family Applications (1)

Application Number Title Priority Date Filing Date
DE60335116T Expired - Lifetime DE60335116D1 (de) 2002-06-28 2003-06-20 Verfahren zum nachweis von sequenzunterschieden

Country Status (10)

Country Link
US (2) US20040096870A1 (de)
EP (1) EP1534859B1 (de)
JP (1) JP4617403B2 (de)
KR (1) KR101038137B1 (de)
CN (1) CN1665938B (de)
AT (1) ATE489477T1 (de)
AU (2) AU2003243700B2 (de)
CA (1) CA2490864C (de)
DE (1) DE60335116D1 (de)
WO (1) WO2004003136A2 (de)

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CN100400673C (zh) * 2004-03-18 2008-07-09 华晶基因技术有限公司 单核苷酸多态性（SNPs）及点突变的检测方法
GB0510979D0 (en) * 2005-05-28 2005-07-06 Kbiosciences Ltd Detection system for PCR assay
JPWO2007055255A1 (ja) * 2005-11-08 2009-04-30 オリンパス株式会社 複数の識別用核酸配列を増幅する方法
US20080020386A1 (en) * 2006-03-29 2008-01-24 Medigen Biotechnology Corporation Methods and apparatus for genotyping
FI20075124A0 (fi) * 2007-02-21 2007-02-21 Valtion Teknillinen Menetelmä ja testikitti nukleotidivariaatioiden toteamiseksi
EP2443256A1 (de) * 2009-06-15 2012-04-25 BG Research Ltd Nukleinsäurenachweis
IT1406054B1 (it) * 2010-10-08 2014-02-06 Bios Internat S R L Metodo fluorescente per lo screening di hla-b*57:01
WO2012152698A1 (en) * 2011-05-06 2012-11-15 Qiagen Gmbh Methods for sequencing, amplification and detection of nucleic acids comprising internally labelled primer
CN108342453A (zh) * 2011-05-09 2018-07-31 富鲁达公司 基于探针的核酸检测
DK3363901T3 (da) 2012-02-17 2021-02-22 Hutchinson Fred Cancer Res Sammensætninger og fremgangsmåder til præcis identificering af mutationer
CN104220876A (zh) 2012-02-21 2014-12-17 奥斯陆大学医院 用于宫颈癌的检测和预后的方法和生物标志物
CA2884246C (en) * 2012-09-24 2023-11-07 Cb Biotechnologies, Inc. Multiplex pyrosequencing using non-interfering noise-canceling polynucleotide identification tags
WO2015089243A1 (en) 2013-12-11 2015-06-18 The Regents For Of The University Of California Methods for labeling dna fragments to recontruct physical linkage and phase
CA2956925C (en) 2014-08-01 2024-02-13 Dovetail Genomics, Llc Tagging nucleic acids for sequence assembly
GB201414745D0 (en) 2014-08-19 2014-10-01 Articzymes As Exonucleases
CA2976902A1 (en) 2015-02-17 2016-08-25 Dovetail Genomics Llc Nucleic acid sequence assembly
GB2554572B (en) 2015-03-26 2021-06-23 Dovetail Genomics Llc Physical linkage preservation in DNA storage
KR20180096586A (ko) 2015-10-19 2018-08-29 더브테일 제노믹스 엘엘씨 게놈 어셈블리, 하플로타입 페이징 및 표적 독립적 핵산 검출을 위한 방법
SG11201807117WA (en) 2016-02-23 2018-09-27 Dovetail Genomics Llc Generation of phased read-sets for genome assembly and haplotype phasing
EP3954771A1 (de) 2016-05-13 2022-02-16 Dovetail Genomics, LLC Rückgewinnung von long-range-bindungsinformationen aus konservierten proben
US11584958B2 (en) 2017-03-31 2023-02-21 Grail, Llc Library preparation and use thereof for sequencing based error correction and/or variant identification

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US4683195A (en) 1986-01-30 1987-07-28 Cetus Corporation Process for amplifying, detecting, and/or-cloning nucleic acid sequences
US4683202A (en) 1985-03-28 1987-07-28 Cetus Corporation Process for amplifying nucleic acid sequences
US4800159A (en) 1986-02-07 1989-01-24 Cetus Corporation Process for amplifying, detecting, and/or cloning nucleic acid sequences
US4914210A (en) 1987-10-02 1990-04-03 Cetus Corporation Oligonucleotide functionalizing reagents
US6001230A (en) 1988-04-29 1999-12-14 Beckman Coulter, Inc. Automated capillary electrophoresis apparatus
US5639611A (en) * 1988-12-12 1997-06-17 City Of Hope Allele specific polymerase chain reaction
US5521301A (en) * 1988-12-12 1996-05-28 City Of Hope Genotyping of multiple allele systems
US5856092A (en) * 1989-02-13 1999-01-05 Geneco Pty Ltd Detection of a nucleic acid sequence or a change therein
US6013431A (en) * 1990-02-16 2000-01-11 Molecular Tool, Inc. Method for determining specific nucleotide variations by primer extension in the presence of mixture of labeled nucleotides and terminators
US5210015A (en) * 1990-08-06 1993-05-11 Hoffman-La Roche Inc. Homogeneous assay system using the nuclease activity of a nucleic acid polymerase
US5846710A (en) * 1990-11-02 1998-12-08 St. Louis University Method for the detection of genetic diseases and gene sequence variations by single nucleotide primer extension
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US5981176A (en) * 1992-06-17 1999-11-09 City Of Hope Method of detecting and discriminating between nucleic acid sequences
US5710028A (en) * 1992-07-02 1998-01-20 Eyal; Nurit Method of quick screening and identification of specific DNA sequences by single nucleotide primer extension and kits therefor
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US5538848A (en) * 1994-11-16 1996-07-23 Applied Biosystems Division, Perkin-Elmer Corp. Method for detecting nucleic acid amplification using self-quenching fluorescence probe
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JP4000605B2 (ja) * 1996-07-24 2007-10-31 株式会社日立製作所 Ｄｎａ試料調整装置及びこれを用いる電気泳動分析装置
US5863736A (en) * 1997-05-23 1999-01-26 Becton, Dickinson And Company Method, apparatus and computer program products for determining quantities of nucleic acid sequences in samples
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US6074831A (en) * 1998-07-09 2000-06-13 Agilent Technologies, Inc. Partitioning of polymorphic DNAs
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Also Published As

Publication number Publication date
KR20050034651A (ko) 2005-04-14
EP1534859A4 (de) 2007-09-05
AU2003243700B2 (en) 2009-04-30
WO2004003136A3 (en) 2004-08-19
CN1665938B (zh) 2012-10-10
JP4617403B2 (ja) 2011-01-26
CA2490864A1 (en) 2004-01-08
AU2003243700A1 (en) 2004-01-19
JP2005531314A (ja) 2005-10-20
ATE489477T1 (de) 2010-12-15
EP1534859B1 (de) 2010-11-24
US20110300537A1 (en) 2011-12-08
WO2004003136A2 (en) 2004-01-08
US20040096870A1 (en) 2004-05-20
KR101038137B1 (ko) 2011-05-31
CA2490864C (en) 2012-09-11
CN1665938A (zh) 2005-09-07
AU2009200987A1 (en) 2009-04-09
EP1534859A2 (de) 2005-06-01

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