ATE437242T1 - Polynukleotidmatrix-basiertes verfahren zur identifizierung von mikroorganismen - Google Patents

Polynukleotidmatrix-basiertes verfahren zur identifizierung von mikroorganismen

Info

Publication number
ATE437242T1
ATE437242T1 AT08151292T AT08151292T ATE437242T1 AT E437242 T1 ATE437242 T1 AT E437242T1 AT 08151292 T AT08151292 T AT 08151292T AT 08151292 T AT08151292 T AT 08151292T AT E437242 T1 ATE437242 T1 AT E437242T1
Authority
AT
Austria
Prior art keywords
probes
polynucleotide
collection
nucleic acids
based method
Prior art date
Application number
AT08151292T
Other languages
English (en)
Inventor
James J Hogan
Original Assignee
Gen Probe Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Gen Probe Inc filed Critical Gen Probe Inc
Application granted granted Critical
Publication of ATE437242T1 publication Critical patent/ATE437242T1/de

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips
AT08151292T 1999-05-03 2000-05-03 Polynukleotidmatrix-basiertes verfahren zur identifizierung von mikroorganismen ATE437242T1 (de)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US13241199P 1999-05-03 1999-05-03
US15014999P 1999-08-20 1999-08-20

Publications (1)

Publication Number Publication Date
ATE437242T1 true ATE437242T1 (de) 2009-08-15

Family

ID=26830335

Family Applications (2)

Application Number Title Priority Date Filing Date
AT00928890T ATE386139T1 (de) 1999-05-03 2000-05-03 Verfahren, basierend auf einer polynukleotidmatrix, zur identifizierung von mikroorganismen
AT08151292T ATE437242T1 (de) 1999-05-03 2000-05-03 Polynukleotidmatrix-basiertes verfahren zur identifizierung von mikroorganismen

Family Applications Before (1)

Application Number Title Priority Date Filing Date
AT00928890T ATE386139T1 (de) 1999-05-03 2000-05-03 Verfahren, basierend auf einer polynukleotidmatrix, zur identifizierung von mikroorganismen

Country Status (7)

Country Link
EP (1) EP1177318B1 (de)
JP (1) JP2002542808A (de)
AT (2) ATE386139T1 (de)
AU (2) AU778230B2 (de)
CA (1) CA2370255C (de)
DE (2) DE60042623D1 (de)
WO (1) WO2000066789A2 (de)

Families Citing this family (48)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6235484B1 (en) 1999-05-03 2001-05-22 Gen-Probe Incorporated Polynucleotide probes for detection and quantitation of actinomycetes
ATE335847T1 (de) * 1999-05-03 2006-09-15 Gen Probe Inc Poynukleotidsonden zur exklusiven detektion und quantifizierung von staphylococcus
US6821770B1 (en) 1999-05-03 2004-11-23 Gen-Probe Incorporated Polynucleotide matrix-based method of identifying microorganisms
US20040121309A1 (en) 2002-12-06 2004-06-24 Ecker David J. Methods for rapid detection and identification of bioagents in blood, bodily fluids, and bodily tissues
US20030027135A1 (en) 2001-03-02 2003-02-06 Ecker David J. Method for rapid detection and identification of bioagents
US7226739B2 (en) 2001-03-02 2007-06-05 Isis Pharmaceuticals, Inc Methods for rapid detection and identification of bioagents in epidemiological and forensic investigations
WO2004060278A2 (en) 2002-12-06 2004-07-22 Isis Pharmaceuticals, Inc. Methods for rapid identification of pathogens in humans and animals
US7666588B2 (en) 2001-03-02 2010-02-23 Ibis Biosciences, Inc. Methods for rapid forensic analysis of mitochondrial DNA and characterization of mitochondrial DNA heteroplasmy
US8073627B2 (en) 2001-06-26 2011-12-06 Ibis Biosciences, Inc. System for indentification of pathogens
US7217510B2 (en) 2001-06-26 2007-05-15 Isis Pharmaceuticals, Inc. Methods for providing bacterial bioagent characterizing information
US20040005611A1 (en) * 2002-05-17 2004-01-08 Hyldig-Nielsen Jens J. PNA probes, probe sets, methods and kits pertaining to the determination of Listeria
JP2007014351A (ja) * 2003-04-02 2007-01-25 Canon Inc 感染症検出用プローブ、遺伝子検出用のプローブ、感染症起炎菌増幅反応用プライマー、感染症起炎菌増幅反応用プライマーセット及び感染症起炎菌検出方法
JP2004313181A (ja) * 2003-04-02 2004-11-11 Canon Inc 感染症起炎菌検出用プローブ及びプローブセット、ならびに担体及び遺伝子検査方法
US8057993B2 (en) 2003-04-26 2011-11-15 Ibis Biosciences, Inc. Methods for identification of coronaviruses
US7964343B2 (en) 2003-05-13 2011-06-21 Ibis Biosciences, Inc. Method for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture
US8158354B2 (en) 2003-05-13 2012-04-17 Ibis Biosciences, Inc. Methods for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture
US8097416B2 (en) 2003-09-11 2012-01-17 Ibis Biosciences, Inc. Methods for identification of sepsis-causing bacteria
US20120122099A1 (en) 2003-09-11 2012-05-17 Rangarajan Sampath Compositions for use in identification of bacteria
US8546082B2 (en) 2003-09-11 2013-10-01 Ibis Biosciences, Inc. Methods for identification of sepsis-causing bacteria
WO2005027731A2 (en) * 2003-09-19 2005-03-31 University Of Rochester Biagnostic system for otolaryngologic pathogens and use thereof
US7666592B2 (en) 2004-02-18 2010-02-23 Ibis Biosciences, Inc. Methods for concurrent identification and quantification of an unknown bioagent
EP2458619B1 (de) 2004-05-24 2017-08-02 Ibis Biosciences, Inc. Massenspektrometrie mit selektivem Ionfilter durch digitale Schwelle
US20050266411A1 (en) 2004-05-25 2005-12-01 Hofstadler Steven A Methods for rapid forensic analysis of mitochondrial DNA
US7811753B2 (en) 2004-07-14 2010-10-12 Ibis Biosciences, Inc. Methods for repairing degraded DNA
WO2006135400A2 (en) 2004-08-24 2006-12-21 Isis Pharmaceuticals, Inc. Methods for rapid identification of recombinant organisms
EP1817432A2 (de) * 2004-10-05 2007-08-15 Wyeth a Corporation of the State of Delaware Sonden-arrays zur detektion von mehreren stämmen verschiedener arten
US20060205040A1 (en) 2005-03-03 2006-09-14 Rangarajan Sampath Compositions for use in identification of adventitious viruses
US8084207B2 (en) 2005-03-03 2011-12-27 Ibis Bioscience, Inc. Compositions for use in identification of papillomavirus
AU2006272776B2 (en) 2005-07-21 2012-01-19 Ibis Biosciences, Inc. Methods for rapid identification and quantitation of nucleic acid variants
JP5154548B2 (ja) * 2006-05-12 2013-02-27 ジェン−プローブ・インコーポレーテッド 腸球菌核酸を検出するための組成物及び方法
AU2007353877B2 (en) 2006-09-14 2012-07-19 Ibis Biosciences, Inc. Targeted whole genome amplification method for identification of pathogens
JP5680304B2 (ja) 2007-02-23 2015-03-04 アイビス バイオサイエンシズ インコーポレイティッド 迅速な法医学的ｄｎａ分析法
EP1978111B1 (de) 2007-04-02 2013-03-27 Gen-Probe Incorporated Zusammensetzungen, Kits und zugehörige Verfahren zur Erkennung und/oder Überwachung von Pseudomonas aeruginosa
EP1997905A1 (de) * 2007-06-01 2008-12-03 Friesland Brands B.V. Amplifikation von Nukleinsäure
WO2008151023A2 (en) 2007-06-01 2008-12-11 Ibis Biosciences, Inc. Methods and compositions for multiple displacement amplification of nucleic acids
WO2009085704A2 (en) 2007-12-26 2009-07-09 Gen-Probe Incorporated Compositions and methods to detect candida albicans nucleic acid
US8148163B2 (en) 2008-09-16 2012-04-03 Ibis Biosciences, Inc. Sample processing units, systems, and related methods
EP2349549B1 (de) 2008-09-16 2012-07-18 Ibis Biosciences, Inc. Mischpatronen, mischstationen und verwandte ausrüstungen, und system
EP2344893B1 (de) 2008-09-16 2014-10-15 Ibis Biosciences, Inc. Mikroplatten-handhabungssysteme und verfahren
EP2396803A4 (de) 2009-02-12 2016-10-26 Ibis Biosciences Inc Ionisationssondenanordnungen
EP2412020B1 (de) 2009-03-24 2020-09-30 University Of Chicago Schiebe- und schneidevorrichtung und entsprechende verfahren
US10196700B2 (en) 2009-03-24 2019-02-05 University Of Chicago Multivolume devices, kits and related methods for quantification and detection of nucleic acids and other analytes
US9447461B2 (en) 2009-03-24 2016-09-20 California Institute Of Technology Analysis devices, kits, and related methods for digital quantification of nucleic acids and other analytes
US9464319B2 (en) 2009-03-24 2016-10-11 California Institute Of Technology Multivolume devices, kits and related methods for quantification of nucleic acids and other analytes
WO2011008972A1 (en) 2009-07-17 2011-01-20 Ibis Biosciences, Inc. Systems for bioagent identification
US8950604B2 (en) 2009-07-17 2015-02-10 Ibis Biosciences, Inc. Lift and mount apparatus
ES2628739T3 (es) 2009-10-15 2017-08-03 Ibis Biosciences, Inc. Amplificación por desplazamiento múltiple
WO2018017880A1 (en) * 2016-07-20 2018-01-25 Management Revenue Group P.R., Llc Kits and methods for detecting and treating gastrointestinal disorders and infections

Family Cites Families (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP3116353B2 (ja) * 1986-11-24 2000-12-11 ジエン‐プローブ・インコーポレイテツド 非ウイルス微生物の検出及び／又は定量用核酸プローブ
WO1988006189A1 (en) * 1987-02-12 1988-08-25 Sdi Diagnostics, Inc. Test system, test device and method for detecting pathogenic organisms and antibiotic resistance genes in body fluids
AU5950690A (en) * 1989-05-31 1991-01-07 Gene-Trak Systems Universal eubacteria nucleic acid probes and methods
CA2025181A1 (en) * 1989-10-12 1991-04-13 William G. Weisburg Nucleic acid probes and methods for detecting fungi
US5593836A (en) * 1993-05-14 1997-01-14 Niemiec; John T. Primers and probes for detecting Pneumocystis carinii
AU689375B2 (en) * 1995-01-19 1998-03-26 Gen-Probe Incorporated Nucleic acid amplification oligonucleotides and probes to lyme disease associated borrelia
EP0937159A4 (de) * 1996-02-08 2004-10-20 Affymetrix Inc Speziesbestimmung und phenotypische charakterisierung von mikroorganismen auf der basis eines chips
EP0951569A2 (de) * 1996-12-23 1999-10-27 University Of Chicago Kundengerichtete oligonukleotidchips als vielfaeltige biosensoren

Also Published As

Publication number Publication date
EP1177318B1 (de) 2008-02-13
AU4705600A (en) 2000-11-17
AU2005200846B2 (en) 2007-08-16
CA2370255A1 (en) 2000-11-09
WO2000066789A2 (en) 2000-11-09
DE60038015T2 (de) 2009-02-12
ATE386139T1 (de) 2008-03-15
WO2000066789A3 (en) 2001-05-03
AU778230B2 (en) 2004-11-25
CA2370255C (en) 2011-03-29
DE60042623D1 (de) 2009-09-03
EP1177318A2 (de) 2002-02-06
JP2002542808A (ja) 2002-12-17
AU2005200846A1 (en) 2005-03-24
DE60038015D1 (de) 2008-03-27

Similar Documents

Publication Publication Date Title
ATE437242T1 (de) Polynukleotidmatrix-basiertes verfahren zur identifizierung von mikroorganismen
US6238866B1 (en) Detector for nucleic acid typing and methods of using the same
Ishii et al. Comparison of microbial communities in four different composting processes as evaluated by denaturing gradient gel electrophoresis analysis
WO1998028444A3 (en) Customized oligonucleotide microchips as multiple biosensors
ES8507177A1 (es) Un metodo para detectar bacterias en una muestra a ensayar
DE3683897D1 (de) Homogenes testsystem fuer spezifische polynukleotide und kit dafuer.
DE3752172D1 (de) Nukleinsäuresonden zum Nachweis und/oder zur Quantifizierung von nicht-viralen Organismen
ATE377656T1 (de) Methode zum nachweis von mikroorganismen
CN102066573A (zh) 用于扩增多个靶标的扩增子拯救多重聚合酶链式反应
DE69839941D1 (de) Bestimmung von pathogenen mikroorganismen und ihrer empfindlichkeit für antimikrobielle reagenzien
AU3338999A (en) Nucleic acid detection method
Ogram et al. Methods of soil microbial community analysis
DE69528263D1 (de) Verwendung eines spezifischen Markers zur Detektion von Salmonellen mit PCR
WO1995033854B1 (en) Use of a specific marker for detection of salmonella with pcr
DE69709804D1 (de) Nachweis von nukleotidsequenzen durch signalamplifizierung
WO2001036683A3 (en) Method for rapid and accurate identification of microorganisms
US20040038270A1 (en) In situ hybridization arrangement for the specific detection of microorganisms
CA2489196A1 (en) Method and test kit for quantitative determination of polynucleotides in a mixture
KR870009030A (ko) 미생물의 신속한 dna시험
JP2006500010A5 (de)
WO1996013608A3 (en) Polynucleic acid sequences for use in the detection and differentiation of prokaryotic organisms
CA2222909C (en) Detection and quantification of one or more nucleotide sequence target analytes in a sample using spatially localized target analyte replication
CN111849966B (zh) 用于鉴定短乳杆菌的恒温检测方法及其专用引物与试剂盒
JP2005532818A5 (de)
CN101613762A (zh) 水产品中致病细菌检测基因芯片试剂盒

Legal Events

Date Code Title Description
RER Ceased as to paragraph 5 lit. 3 law introducing patent treaties