DE60038015D1 - Verfahren, basierend auf einer polynukleotidmatrix, zur identifizierung von mikroorganismen - Google Patents

Verfahren, basierend auf einer polynukleotidmatrix, zur identifizierung von mikroorganismen

Info

Publication number
DE60038015D1
DE60038015D1 DE60038015T DE60038015T DE60038015D1 DE 60038015 D1 DE60038015 D1 DE 60038015D1 DE 60038015 T DE60038015 T DE 60038015T DE 60038015 T DE60038015 T DE 60038015T DE 60038015 D1 DE60038015 D1 DE 60038015D1
Authority
DE
Germany
Prior art keywords
probes
polynucleotide
method based
collection
nucleic acids
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Expired - Lifetime
Application number
DE60038015T
Other languages
English (en)
Other versions
DE60038015T2 (de
Inventor
James J Hogan
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Gen Probe Inc
Original Assignee
Gen Probe Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Gen Probe Inc filed Critical Gen Probe Inc
Application granted granted Critical
Publication of DE60038015D1 publication Critical patent/DE60038015D1/de
Publication of DE60038015T2 publication Critical patent/DE60038015T2/de
Anticipated expiration legal-status Critical
Expired - Lifetime legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Immunology (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Micro-Organisms Or Cultivation Processes Thereof (AREA)
DE60038015T 1999-05-03 2000-05-03 Verfahren, basierend auf einer polynukleotidmatrix, zur identifizierung von mikroorganismen Expired - Lifetime DE60038015T2 (de)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US13241199P 1999-05-03 1999-05-03
US132411P 1999-05-03
US15014999P 1999-08-20 1999-08-20
US150149P 1999-08-20
PCT/US2000/012421 WO2000066789A2 (en) 1999-05-03 2000-05-03 Polynucleotide matrix-based method of identifying microorganisms

Publications (2)

Publication Number Publication Date
DE60038015D1 true DE60038015D1 (de) 2008-03-27
DE60038015T2 DE60038015T2 (de) 2009-02-12

Family

ID=26830335

Family Applications (2)

Application Number Title Priority Date Filing Date
DE60038015T Expired - Lifetime DE60038015T2 (de) 1999-05-03 2000-05-03 Verfahren, basierend auf einer polynukleotidmatrix, zur identifizierung von mikroorganismen
DE60042623T Expired - Lifetime DE60042623D1 (de) 1999-05-03 2000-05-03 Polynukleotidmatrix-basiertes Verfahren zur Identifizierung von Mikroorganismen

Family Applications After (1)

Application Number Title Priority Date Filing Date
DE60042623T Expired - Lifetime DE60042623D1 (de) 1999-05-03 2000-05-03 Polynukleotidmatrix-basiertes Verfahren zur Identifizierung von Mikroorganismen

Country Status (7)

Country Link
EP (1) EP1177318B1 (de)
JP (1) JP2002542808A (de)
AT (2) ATE386139T1 (de)
AU (2) AU778230B2 (de)
CA (1) CA2370255C (de)
DE (2) DE60038015T2 (de)
WO (1) WO2000066789A2 (de)

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US6821770B1 (en) 1999-05-03 2004-11-23 Gen-Probe Incorporated Polynucleotide matrix-based method of identifying microorganisms
DK1177317T3 (da) * 1999-05-03 2006-12-11 Gen Probe Inc Polynukleotidprober til eksklusiv sporing og kvantisering af staphy-lococcus
WO2000066786A2 (en) * 1999-05-03 2000-11-09 Gen-Probe Incorporated Polynucleotide probes for detection and quantitation of actinomycetes
US7666588B2 (en) 2001-03-02 2010-02-23 Ibis Biosciences, Inc. Methods for rapid forensic analysis of mitochondrial DNA and characterization of mitochondrial DNA heteroplasmy
US7226739B2 (en) 2001-03-02 2007-06-05 Isis Pharmaceuticals, Inc Methods for rapid detection and identification of bioagents in epidemiological and forensic investigations
US20030027135A1 (en) 2001-03-02 2003-02-06 Ecker David J. Method for rapid detection and identification of bioagents
US20040121311A1 (en) 2002-12-06 2004-06-24 Ecker David J. Methods for rapid detection and identification of bioagents in livestock
US7217510B2 (en) 2001-06-26 2007-05-15 Isis Pharmaceuticals, Inc. Methods for providing bacterial bioagent characterizing information
US8073627B2 (en) 2001-06-26 2011-12-06 Ibis Biosciences, Inc. System for indentification of pathogens
AU2003239432A1 (en) * 2002-05-17 2003-12-12 Applera Corporation Pna probes, probe sets, method and kits pertaining to the determination of listeria
JP2006516193A (ja) 2002-12-06 2006-06-29 アイシス・ファーマシューティカルス・インコーポレーテッド ヒトおよび動物における病原体の迅速な同定方法
JP2004313181A (ja) * 2003-04-02 2004-11-11 Canon Inc 感染症起炎菌検出用プローブ及びプローブセット、ならびに担体及び遺伝子検査方法
JP2007014351A (ja) * 2003-04-02 2007-01-25 Canon Inc 感染症検出用プローブ、遺伝子検出用のプローブ、感染症起炎菌増幅反応用プライマー、感染症起炎菌増幅反応用プライマーセット及び感染症起炎菌検出方法
US8057993B2 (en) 2003-04-26 2011-11-15 Ibis Biosciences, Inc. Methods for identification of coronaviruses
US7964343B2 (en) 2003-05-13 2011-06-21 Ibis Biosciences, Inc. Method for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture
US8158354B2 (en) 2003-05-13 2012-04-17 Ibis Biosciences, Inc. Methods for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture
US8546082B2 (en) 2003-09-11 2013-10-01 Ibis Biosciences, Inc. Methods for identification of sepsis-causing bacteria
US8097416B2 (en) 2003-09-11 2012-01-17 Ibis Biosciences, Inc. Methods for identification of sepsis-causing bacteria
US20120122099A1 (en) 2003-09-11 2012-05-17 Rangarajan Sampath Compositions for use in identification of bacteria
EP1677666A2 (de) * 2003-09-19 2006-07-12 University of Rochester Diagnostisches system für otolaryngologische erreger und seine verwendung
US7666592B2 (en) 2004-02-18 2010-02-23 Ibis Biosciences, Inc. Methods for concurrent identification and quantification of an unknown bioagent
US7714275B2 (en) 2004-05-24 2010-05-11 Ibis Biosciences, Inc. Mass spectrometry with selective ion filtration by digital thresholding
US20050266411A1 (en) 2004-05-25 2005-12-01 Hofstadler Steven A Methods for rapid forensic analysis of mitochondrial DNA
US7811753B2 (en) 2004-07-14 2010-10-12 Ibis Biosciences, Inc. Methods for repairing degraded DNA
WO2006135400A2 (en) 2004-08-24 2006-12-21 Isis Pharmaceuticals, Inc. Methods for rapid identification of recombinant organisms
WO2007018563A2 (en) * 2004-10-05 2007-02-15 Wyeth Probe arrays for detecting multiple strains of different species
EP1869180B1 (de) 2005-03-03 2013-02-20 Ibis Biosciences, Inc. Zusammensetzung zur Verwendung bei der Identifikation von Polyomaviren
US8084207B2 (en) 2005-03-03 2011-12-27 Ibis Bioscience, Inc. Compositions for use in identification of papillomavirus
CA2616281C (en) 2005-07-21 2014-04-22 Isis Pharmaceuticals, Inc. Methods for rapid identification and quantitation of mitochondrial dna variants
WO2007134208A2 (en) * 2006-05-12 2007-11-22 Gen-Probe Incorporated Compositions and methods to detect enterococci nucleic acid
CA2663029C (en) 2006-09-14 2016-07-19 Ibis Biosciences, Inc. Targeted whole genome amplification method for identification of pathogens
US8871471B2 (en) 2007-02-23 2014-10-28 Ibis Biosciences, Inc. Methods for rapid forensic DNA analysis
EP1978111B1 (de) 2007-04-02 2013-03-27 Gen-Probe Incorporated Zusammensetzungen, Kits und zugehörige Verfahren zur Erkennung und/oder Überwachung von Pseudomonas aeruginosa
EP1997905A1 (de) * 2007-06-01 2008-12-03 Friesland Brands B.V. Amplifikation von Nukleinsäure
US9598724B2 (en) 2007-06-01 2017-03-21 Ibis Biosciences, Inc. Methods and compositions for multiple displacement amplification of nucleic acids
AU2008343380B2 (en) 2007-12-26 2012-07-12 Gen-Probe Incorporated Compositions and methods to detect Candida albicans nucleic acid
US8550694B2 (en) 2008-09-16 2013-10-08 Ibis Biosciences, Inc. Mixing cartridges, mixing stations, and related kits, systems, and methods
US8148163B2 (en) 2008-09-16 2012-04-03 Ibis Biosciences, Inc. Sample processing units, systems, and related methods
EP2344893B1 (de) 2008-09-16 2014-10-15 Ibis Biosciences, Inc. Mikroplatten-handhabungssysteme und verfahren
WO2010093943A1 (en) 2009-02-12 2010-08-19 Ibis Biosciences, Inc. Ionization probe assemblies
US10196700B2 (en) 2009-03-24 2019-02-05 University Of Chicago Multivolume devices, kits and related methods for quantification and detection of nucleic acids and other analytes
US9464319B2 (en) 2009-03-24 2016-10-11 California Institute Of Technology Multivolume devices, kits and related methods for quantification of nucleic acids and other analytes
US9447461B2 (en) 2009-03-24 2016-09-20 California Institute Of Technology Analysis devices, kits, and related methods for digital quantification of nucleic acids and other analytes
WO2010111265A1 (en) 2009-03-24 2010-09-30 University Of Chicago Slip chip device and methods
US8950604B2 (en) 2009-07-17 2015-02-10 Ibis Biosciences, Inc. Lift and mount apparatus
US9194877B2 (en) 2009-07-17 2015-11-24 Ibis Biosciences, Inc. Systems for bioagent indentification
WO2011047307A1 (en) 2009-10-15 2011-04-21 Ibis Biosciences, Inc. Multiple displacement amplification
WO2018017880A1 (en) * 2016-07-20 2018-01-25 Management Revenue Group P.R., Llc Kits and methods for detecting and treating gastrointestinal disorders and infections

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CA1339871C (en) * 1986-11-24 1998-05-19 Richard Dana Smith Nucleic acid probes for detection and/or quantitation of non-viral organisms
WO1988006189A1 (en) * 1987-02-12 1988-08-25 Sdi Diagnostics, Inc. Test system, test device and method for detecting pathogenic organisms and antibiotic resistance genes in body fluids
EP0431149B1 (de) * 1989-05-31 1995-09-06 Amoco Corporation Universelle nukleinsäuresonden für eubakterien sowie methoden
CA2025181A1 (en) * 1989-10-12 1991-04-13 William G. Weisburg Nucleic acid probes and methods for detecting fungi
US5593836A (en) * 1993-05-14 1997-01-14 Niemiec; John T. Primers and probes for detecting Pneumocystis carinii
DK0805876T3 (da) * 1995-01-19 2000-11-06 Gen Probe Inc Nukleinsyreamplifikationsoligonukleotider og prober til Lyme-sygdom-associeret Borrelia
US6228575B1 (en) * 1996-02-08 2001-05-08 Affymetrix, Inc. Chip-based species identification and phenotypic characterization of microorganisms
AU5716098A (en) * 1996-12-23 1998-07-17 University Of Chicago, The Customized oligonucleotide microchips as multiple biosensors

Also Published As

Publication number Publication date
AU2005200846A1 (en) 2005-03-24
WO2000066789A3 (en) 2001-05-03
DE60038015T2 (de) 2009-02-12
JP2002542808A (ja) 2002-12-17
CA2370255A1 (en) 2000-11-09
ATE437242T1 (de) 2009-08-15
AU778230B2 (en) 2004-11-25
EP1177318B1 (de) 2008-02-13
WO2000066789A2 (en) 2000-11-09
CA2370255C (en) 2011-03-29
AU4705600A (en) 2000-11-17
AU2005200846B2 (en) 2007-08-16
ATE386139T1 (de) 2008-03-15
EP1177318A2 (de) 2002-02-06
DE60042623D1 (de) 2009-09-03

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