ATE386139T1 - Verfahren, basierend auf einer polynukleotidmatrix, zur identifizierung von mikroorganismen - Google Patents

Verfahren, basierend auf einer polynukleotidmatrix, zur identifizierung von mikroorganismen

Info

Publication number
ATE386139T1
ATE386139T1 AT00928890T AT00928890T ATE386139T1 AT E386139 T1 ATE386139 T1 AT E386139T1 AT 00928890 T AT00928890 T AT 00928890T AT 00928890 T AT00928890 T AT 00928890T AT E386139 T1 ATE386139 T1 AT E386139T1
Authority
AT
Austria
Prior art keywords
probes
polynucleotide
method based
collection
nucleic acids
Prior art date
Application number
AT00928890T
Other languages
English (en)
Inventor
James Hogan
Original Assignee
Gen Probe Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Gen Probe Inc filed Critical Gen Probe Inc
Application granted granted Critical
Publication of ATE386139T1 publication Critical patent/ATE386139T1/de

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Immunology (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Micro-Organisms Or Cultivation Processes Thereof (AREA)
AT00928890T 1999-05-03 2000-05-03 Verfahren, basierend auf einer polynukleotidmatrix, zur identifizierung von mikroorganismen ATE386139T1 (de)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US13241199P 1999-05-03 1999-05-03
US15014999P 1999-08-20 1999-08-20

Publications (1)

Publication Number Publication Date
ATE386139T1 true ATE386139T1 (de) 2008-03-15

Family

ID=26830335

Family Applications (2)

Application Number Title Priority Date Filing Date
AT00928890T ATE386139T1 (de) 1999-05-03 2000-05-03 Verfahren, basierend auf einer polynukleotidmatrix, zur identifizierung von mikroorganismen
AT08151292T ATE437242T1 (de) 1999-05-03 2000-05-03 Polynukleotidmatrix-basiertes verfahren zur identifizierung von mikroorganismen

Family Applications After (1)

Application Number Title Priority Date Filing Date
AT08151292T ATE437242T1 (de) 1999-05-03 2000-05-03 Polynukleotidmatrix-basiertes verfahren zur identifizierung von mikroorganismen

Country Status (7)

Country Link
EP (1) EP1177318B1 (de)
JP (1) JP2002542808A (de)
AT (2) ATE386139T1 (de)
AU (2) AU778230B2 (de)
CA (1) CA2370255C (de)
DE (2) DE60042623D1 (de)
WO (1) WO2000066789A2 (de)

Families Citing this family (48)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6821770B1 (en) 1999-05-03 2004-11-23 Gen-Probe Incorporated Polynucleotide matrix-based method of identifying microorganisms
CA2370138C (en) 1999-05-03 2010-09-21 Gen-Probe Incorporated Polynucleotide probes for detection and quantitation of staphylococcus
ES2265344T3 (es) * 1999-05-03 2007-02-16 Gen-Probe Incorporated Sondas de polinucleotido para la deteccion y cuantificacion de actinomicetos.
US20040121335A1 (en) 2002-12-06 2004-06-24 Ecker David J. Methods for rapid detection and identification of bioagents associated with host versus graft and graft versus host rejections
US7666588B2 (en) 2001-03-02 2010-02-23 Ibis Biosciences, Inc. Methods for rapid forensic analysis of mitochondrial DNA and characterization of mitochondrial DNA heteroplasmy
US7226739B2 (en) 2001-03-02 2007-06-05 Isis Pharmaceuticals, Inc Methods for rapid detection and identification of bioagents in epidemiological and forensic investigations
US20030027135A1 (en) 2001-03-02 2003-02-06 Ecker David J. Method for rapid detection and identification of bioagents
US8073627B2 (en) 2001-06-26 2011-12-06 Ibis Biosciences, Inc. System for indentification of pathogens
US7217510B2 (en) 2001-06-26 2007-05-15 Isis Pharmaceuticals, Inc. Methods for providing bacterial bioagent characterizing information
JP2006507798A (ja) * 2002-05-17 2006-03-09 アプレラ　コーポレイション Ｌｉｓｔｅｒｉａの決定に関するＰＮＡプローブ、プローブセット、方法およびキット
EP1578399A4 (de) 2002-12-06 2007-11-28 Isis Pharmaceuticals Inc Verfahren für die rasche identifikation von pathogenen bei tier und mensch
JP2007014351A (ja) * 2003-04-02 2007-01-25 Canon Inc 感染症検出用プローブ、遺伝子検出用のプローブ、感染症起炎菌増幅反応用プライマー、感染症起炎菌増幅反応用プライマーセット及び感染症起炎菌検出方法
JP2004313181A (ja) 2003-04-02 2004-11-11 Canon Inc 感染症起炎菌検出用プローブ及びプローブセット、ならびに担体及び遺伝子検査方法
US8057993B2 (en) 2003-04-26 2011-11-15 Ibis Biosciences, Inc. Methods for identification of coronaviruses
US8158354B2 (en) 2003-05-13 2012-04-17 Ibis Biosciences, Inc. Methods for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture
US7964343B2 (en) 2003-05-13 2011-06-21 Ibis Biosciences, Inc. Method for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture
US8546082B2 (en) 2003-09-11 2013-10-01 Ibis Biosciences, Inc. Methods for identification of sepsis-causing bacteria
US8097416B2 (en) 2003-09-11 2012-01-17 Ibis Biosciences, Inc. Methods for identification of sepsis-causing bacteria
US8288523B2 (en) 2003-09-11 2012-10-16 Ibis Biosciences, Inc. Compositions for use in identification of bacteria
US20070218459A1 (en) * 2003-09-19 2007-09-20 Miller Benjamin L Diagnostic System For Otolaryngologic Pathogens And Use Thereof
US7666592B2 (en) 2004-02-18 2010-02-23 Ibis Biosciences, Inc. Methods for concurrent identification and quantification of an unknown bioagent
EP2458619B1 (de) 2004-05-24 2017-08-02 Ibis Biosciences, Inc. Massenspektrometrie mit selektivem Ionfilter durch digitale Schwelle
US20050266411A1 (en) 2004-05-25 2005-12-01 Hofstadler Steven A Methods for rapid forensic analysis of mitochondrial DNA
US7811753B2 (en) 2004-07-14 2010-10-12 Ibis Biosciences, Inc. Methods for repairing degraded DNA
WO2006135400A2 (en) 2004-08-24 2006-12-21 Isis Pharmaceuticals, Inc. Methods for rapid identification of recombinant organisms
WO2007018563A2 (en) * 2004-10-05 2007-02-15 Wyeth Probe arrays for detecting multiple strains of different species
US8084207B2 (en) 2005-03-03 2011-12-27 Ibis Bioscience, Inc. Compositions for use in identification of papillomavirus
CA2600184A1 (en) 2005-03-03 2006-09-08 Isis Pharmaceuticals, Inc. Compositions for use in identification of adventitious viruses
CA2616281C (en) 2005-07-21 2014-04-22 Isis Pharmaceuticals, Inc. Methods for rapid identification and quantitation of mitochondrial dna variants
WO2007134208A2 (en) * 2006-05-12 2007-11-22 Gen-Probe Incorporated Compositions and methods to detect enterococci nucleic acid
WO2008143627A2 (en) 2006-09-14 2008-11-27 Ibis Biosciences, Inc. Targeted whole genome amplification method for identification of pathogens
US8871471B2 (en) 2007-02-23 2014-10-28 Ibis Biosciences, Inc. Methods for rapid forensic DNA analysis
EP1978111B1 (de) 2007-04-02 2013-03-27 Gen-Probe Incorporated Zusammensetzungen, Kits und zugehörige Verfahren zur Erkennung und/oder Überwachung von Pseudomonas aeruginosa
EP1997905A1 (de) * 2007-06-01 2008-12-03 Friesland Brands B.V. Amplifikation von Nukleinsäure
US9598724B2 (en) 2007-06-01 2017-03-21 Ibis Biosciences, Inc. Methods and compositions for multiple displacement amplification of nucleic acids
AU2008343380B2 (en) 2007-12-26 2012-07-12 Gen-Probe Incorporated Compositions and methods to detect Candida albicans nucleic acid
WO2010033625A1 (en) 2008-09-16 2010-03-25 Ibis Biosciences, Inc. Microplate handling systems and related computer program products and methods
US8550694B2 (en) 2008-09-16 2013-10-08 Ibis Biosciences, Inc. Mixing cartridges, mixing stations, and related kits, systems, and methods
WO2010033627A2 (en) 2008-09-16 2010-03-25 Ibis Biosciences, Inc. Sample processing units, systems, and related methods
US8158936B2 (en) 2009-02-12 2012-04-17 Ibis Biosciences, Inc. Ionization probe assemblies
US9464319B2 (en) 2009-03-24 2016-10-11 California Institute Of Technology Multivolume devices, kits and related methods for quantification of nucleic acids and other analytes
US10196700B2 (en) 2009-03-24 2019-02-05 University Of Chicago Multivolume devices, kits and related methods for quantification and detection of nucleic acids and other analytes
CN102439717B (zh) 2009-03-24 2015-01-21 芝加哥大学 滑动式芯片装置和方法
US9447461B2 (en) 2009-03-24 2016-09-20 California Institute Of Technology Analysis devices, kits, and related methods for digital quantification of nucleic acids and other analytes
US9194877B2 (en) 2009-07-17 2015-11-24 Ibis Biosciences, Inc. Systems for bioagent indentification
US8950604B2 (en) 2009-07-17 2015-02-10 Ibis Biosciences, Inc. Lift and mount apparatus
WO2011047307A1 (en) 2009-10-15 2011-04-21 Ibis Biosciences, Inc. Multiple displacement amplification
WO2018017880A1 (en) * 2016-07-20 2018-01-25 Management Revenue Group P.R., Llc Kits and methods for detecting and treating gastrointestinal disorders and infections

Family Cites Families (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
DE3752172T3 (de) * 1986-11-24 2008-04-10 Gen-Probe Inc., San Diego Nukleinsäuresonden zum Nachweis und/oder zur Quantifizierung von nicht-viralen Organismen
WO1988006189A1 (en) * 1987-02-12 1988-08-25 Sdi Diagnostics, Inc. Test system, test device and method for detecting pathogenic organisms and antibiotic resistance genes in body fluids
ATE127530T1 (de) * 1989-05-31 1995-09-15 Amoco Corp Universelle nukleinsäuresonden für eubakterien sowie methoden.
CA2025181A1 (en) * 1989-10-12 1991-04-13 William G. Weisburg Nucleic acid probes and methods for detecting fungi
US5593836A (en) * 1993-05-14 1997-01-14 Niemiec; John T. Primers and probes for detecting Pneumocystis carinii
DK0805876T3 (da) * 1995-01-19 2000-11-06 Gen Probe Inc Nukleinsyreamplifikationsoligonukleotider og prober til Lyme-sygdom-associeret Borrelia
JP2000504575A (ja) * 1996-02-08 2000-04-18 アフィメトリックス，インコーポレイテッド 微生物のチップベースの種分化および表現型特徴付け
AU5716098A (en) * 1996-12-23 1998-07-17 University Of Chicago, The Customized oligonucleotide microchips as multiple biosensors

Also Published As

Publication number Publication date
AU778230B2 (en) 2004-11-25
WO2000066789A3 (en) 2001-05-03
DE60038015D1 (de) 2008-03-27
EP1177318B1 (de) 2008-02-13
CA2370255A1 (en) 2000-11-09
AU2005200846A1 (en) 2005-03-24
DE60038015T2 (de) 2009-02-12
EP1177318A2 (de) 2002-02-06
CA2370255C (en) 2011-03-29
AU2005200846B2 (en) 2007-08-16
ATE437242T1 (de) 2009-08-15
JP2002542808A (ja) 2002-12-17
WO2000066789A2 (en) 2000-11-09
AU4705600A (en) 2000-11-17
DE60042623D1 (de) 2009-09-03

Similar Documents

Publication Publication Date Title
ATE386139T1 (de) Verfahren, basierend auf einer polynukleotidmatrix, zur identifizierung von mikroorganismen
US6238866B1 (en) Detector for nucleic acid typing and methods of using the same
Ishii et al. Comparison of microbial communities in four different composting processes as evaluated by denaturing gradient gel electrophoresis analysis
WO1998028444A3 (en) Customized oligonucleotide microchips as multiple biosensors
ES8507177A1 (es) Un metodo para detectar bacterias en una muestra a ensayar
CN1995380B (zh) 一种检测和鉴定分枝杆菌菌种的方法及其专用试剂盒
DE60131284D1 (de) Methode zum nachweis von mikroorganismen
ATE163680T1 (de) Nukleinsäuresonden zum nachweis und/oder zur quantifizierung von nicht-viralen organismen
ATE110418T1 (de) Nachweis von mykoplasma durch hybridisierung von dns.
DK275183A (da) Fremgangsmaade og reagenskombination til diagnose af mikroorganismer
ATE406458T1 (de) Bestimmung von pathogenen mikroorganismen und ihrer empfindlichkeit für antimikrobielle reagenzien
AU3338999A (en) Nucleic acid detection method
CN111154900A (zh) 铜绿假单胞菌特异性新分子靶标及其快速检测方法
DE69528263D1 (de) Verwendung eines spezifischen Markers zur Detektion von Salmonellen mit PCR
WO1995033854B1 (en) Use of a specific marker for detection of salmonella with pcr
DE69709804D1 (de) Nachweis von nukleotidsequenzen durch signalamplifizierung
WO2001036683A3 (en) Method for rapid and accurate identification of microorganisms
US20040038270A1 (en) In situ hybridization arrangement for the specific detection of microorganisms
CA2222909C (en) Detection and quantification of one or more nucleotide sequence target analytes in a sample using spatially localized target analyte replication
JP2005532818A5 (de)
Petrisor et al. Microbial forensics
Knight et al. Identification of Acinetobacter isolates using the Biolog identification system
CN101613762A (zh) 水产品中致病细菌检测基因芯片试剂盒
Lim Molecular identification of nanoplanktonic protists based on small subunit ribosomal RNA gene sequences for ecological studies 1
KR102232688B1 (ko) 콜레라균 검출용 바이오 마커 및 중합효소연쇄반응 키트

Legal Events

Date Code Title Description
RER Ceased as to paragraph 5 lit. 3 law introducing patent treaties