DE60042623D1 - Polynukleotidmatrix-basiertes Verfahren zur Identifizierung von Mikroorganismen - Google Patents
Polynukleotidmatrix-basiertes Verfahren zur Identifizierung von MikroorganismenInfo
- Publication number
- DE60042623D1 DE60042623D1 DE60042623T DE60042623T DE60042623D1 DE 60042623 D1 DE60042623 D1 DE 60042623D1 DE 60042623 T DE60042623 T DE 60042623T DE 60042623 T DE60042623 T DE 60042623T DE 60042623 D1 DE60042623 D1 DE 60042623D1
- Authority
- DE
- Germany
- Prior art keywords
- probes
- microorganisms
- polynucleotide
- collection
- identification
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Expired - Lifetime
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
- C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Analytical Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Physics & Mathematics (AREA)
- Biochemistry (AREA)
- Immunology (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Micro-Organisms Or Cultivation Processes Thereof (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US13241199P | 1999-05-03 | 1999-05-03 | |
US15014999P | 1999-08-20 | 1999-08-20 |
Publications (1)
Publication Number | Publication Date |
---|---|
DE60042623D1 true DE60042623D1 (de) | 2009-09-03 |
Family
ID=26830335
Family Applications (2)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
DE60038015T Expired - Lifetime DE60038015T2 (de) | 1999-05-03 | 2000-05-03 | Verfahren, basierend auf einer polynukleotidmatrix, zur identifizierung von mikroorganismen |
DE60042623T Expired - Lifetime DE60042623D1 (de) | 1999-05-03 | 2000-05-03 | Polynukleotidmatrix-basiertes Verfahren zur Identifizierung von Mikroorganismen |
Family Applications Before (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
DE60038015T Expired - Lifetime DE60038015T2 (de) | 1999-05-03 | 2000-05-03 | Verfahren, basierend auf einer polynukleotidmatrix, zur identifizierung von mikroorganismen |
Country Status (7)
Country | Link |
---|---|
EP (1) | EP1177318B1 (de) |
JP (1) | JP2002542808A (de) |
AT (2) | ATE437242T1 (de) |
AU (2) | AU778230B2 (de) |
CA (1) | CA2370255C (de) |
DE (2) | DE60038015T2 (de) |
WO (1) | WO2000066789A2 (de) |
Families Citing this family (48)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CA2370123C (en) | 1999-05-03 | 2010-09-14 | Gen-Probe Incorporated | Polynucleotide probes for detection and quantitation of actinomycetes |
WO2000066788A2 (en) * | 1999-05-03 | 2000-11-09 | Gen-Probe Incorporated | Polynucleotide probes for detection and quantitation of staphylococcus |
US6821770B1 (en) | 1999-05-03 | 2004-11-23 | Gen-Probe Incorporated | Polynucleotide matrix-based method of identifying microorganisms |
US20040121311A1 (en) | 2002-12-06 | 2004-06-24 | Ecker David J. | Methods for rapid detection and identification of bioagents in livestock |
US20030027135A1 (en) | 2001-03-02 | 2003-02-06 | Ecker David J. | Method for rapid detection and identification of bioagents |
US7666588B2 (en) | 2001-03-02 | 2010-02-23 | Ibis Biosciences, Inc. | Methods for rapid forensic analysis of mitochondrial DNA and characterization of mitochondrial DNA heteroplasmy |
US7226739B2 (en) | 2001-03-02 | 2007-06-05 | Isis Pharmaceuticals, Inc | Methods for rapid detection and identification of bioagents in epidemiological and forensic investigations |
US7217510B2 (en) | 2001-06-26 | 2007-05-15 | Isis Pharmaceuticals, Inc. | Methods for providing bacterial bioagent characterizing information |
US8073627B2 (en) | 2001-06-26 | 2011-12-06 | Ibis Biosciences, Inc. | System for indentification of pathogens |
AU2003239432A1 (en) * | 2002-05-17 | 2003-12-12 | Applera Corporation | Pna probes, probe sets, method and kits pertaining to the determination of listeria |
JP2006516193A (ja) | 2002-12-06 | 2006-06-29 | アイシス・ファーマシューティカルス・インコーポレーテッド | ヒトおよび動物における病原体の迅速な同定方法 |
JP2004313181A (ja) * | 2003-04-02 | 2004-11-11 | Canon Inc | 感染症起炎菌検出用プローブ及びプローブセット、ならびに担体及び遺伝子検査方法 |
JP2007014351A (ja) * | 2003-04-02 | 2007-01-25 | Canon Inc | 感染症検出用プローブ、遺伝子検出用のプローブ、感染症起炎菌増幅反応用プライマー、感染症起炎菌増幅反応用プライマーセット及び感染症起炎菌検出方法 |
US8057993B2 (en) | 2003-04-26 | 2011-11-15 | Ibis Biosciences, Inc. | Methods for identification of coronaviruses |
US7964343B2 (en) | 2003-05-13 | 2011-06-21 | Ibis Biosciences, Inc. | Method for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture |
US8158354B2 (en) | 2003-05-13 | 2012-04-17 | Ibis Biosciences, Inc. | Methods for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture |
US8097416B2 (en) | 2003-09-11 | 2012-01-17 | Ibis Biosciences, Inc. | Methods for identification of sepsis-causing bacteria |
US8288523B2 (en) | 2003-09-11 | 2012-10-16 | Ibis Biosciences, Inc. | Compositions for use in identification of bacteria |
US8546082B2 (en) | 2003-09-11 | 2013-10-01 | Ibis Biosciences, Inc. | Methods for identification of sepsis-causing bacteria |
EP1677666A2 (de) * | 2003-09-19 | 2006-07-12 | University of Rochester | Diagnostisches system für otolaryngologische erreger und seine verwendung |
US8163895B2 (en) | 2003-12-05 | 2012-04-24 | Ibis Biosciences, Inc. | Compositions for use in identification of orthopoxviruses |
US7666592B2 (en) | 2004-02-18 | 2010-02-23 | Ibis Biosciences, Inc. | Methods for concurrent identification and quantification of an unknown bioagent |
CA2567839C (en) | 2004-05-24 | 2011-06-28 | Isis Pharmaceuticals, Inc. | Mass spectrometry with selective ion filtration by digital thresholding |
US20050266411A1 (en) | 2004-05-25 | 2005-12-01 | Hofstadler Steven A | Methods for rapid forensic analysis of mitochondrial DNA |
US7811753B2 (en) | 2004-07-14 | 2010-10-12 | Ibis Biosciences, Inc. | Methods for repairing degraded DNA |
AU2005335216A1 (en) * | 2004-10-05 | 2007-02-15 | Wyeth | Probe arrays for detecting multiple strains of different species |
EP1869180B1 (de) | 2005-03-03 | 2013-02-20 | Ibis Biosciences, Inc. | Zusammensetzung zur Verwendung bei der Identifikation von Polyomaviren |
US8084207B2 (en) | 2005-03-03 | 2011-12-27 | Ibis Bioscience, Inc. | Compositions for use in identification of papillomavirus |
US8026084B2 (en) | 2005-07-21 | 2011-09-27 | Ibis Biosciences, Inc. | Methods for rapid identification and quantitation of nucleic acid variants |
AU2007249286B2 (en) * | 2006-05-12 | 2013-06-13 | Gen-Probe Incorporated | Compositions and methods to detect enterococci nucleic acid |
WO2008143627A2 (en) | 2006-09-14 | 2008-11-27 | Ibis Biosciences, Inc. | Targeted whole genome amplification method for identification of pathogens |
EP2126132B1 (de) | 2007-02-23 | 2013-03-20 | Ibis Biosciences, Inc. | Verfahren für schnelle forensische dna-analyse |
EP1978111B1 (de) * | 2007-04-02 | 2013-03-27 | Gen-Probe Incorporated | Zusammensetzungen, Kits und zugehörige Verfahren zur Erkennung und/oder Überwachung von Pseudomonas aeruginosa |
EP1997905A1 (de) * | 2007-06-01 | 2008-12-03 | Friesland Brands B.V. | Amplifikation von Nukleinsäure |
US9598724B2 (en) | 2007-06-01 | 2017-03-21 | Ibis Biosciences, Inc. | Methods and compositions for multiple displacement amplification of nucleic acids |
CA2715991A1 (en) | 2007-12-26 | 2009-07-09 | Gen-Probe Incorporated | Amplification oligomers and methods to detect candida albicans 26s rrna or encoding dna |
EP2349549B1 (de) | 2008-09-16 | 2012-07-18 | Ibis Biosciences, Inc. | Mischpatronen, mischstationen und verwandte ausrüstungen, und system |
WO2010033627A2 (en) | 2008-09-16 | 2010-03-25 | Ibis Biosciences, Inc. | Sample processing units, systems, and related methods |
EP2344893B1 (de) | 2008-09-16 | 2014-10-15 | Ibis Biosciences, Inc. | Mikroplatten-handhabungssysteme und verfahren |
EP2396803A4 (de) | 2009-02-12 | 2016-10-26 | Ibis Biosciences Inc | Ionisationssondenanordnungen |
US9464319B2 (en) | 2009-03-24 | 2016-10-11 | California Institute Of Technology | Multivolume devices, kits and related methods for quantification of nucleic acids and other analytes |
US9447461B2 (en) | 2009-03-24 | 2016-09-20 | California Institute Of Technology | Analysis devices, kits, and related methods for digital quantification of nucleic acids and other analytes |
KR101796906B1 (ko) | 2009-03-24 | 2017-11-10 | 유니버시티 오브 시카고 | 반응을 수행하기 위한 방법 |
US10196700B2 (en) | 2009-03-24 | 2019-02-05 | University Of Chicago | Multivolume devices, kits and related methods for quantification and detection of nucleic acids and other analytes |
US8950604B2 (en) | 2009-07-17 | 2015-02-10 | Ibis Biosciences, Inc. | Lift and mount apparatus |
WO2011008972A1 (en) | 2009-07-17 | 2011-01-20 | Ibis Biosciences, Inc. | Systems for bioagent identification |
WO2011047307A1 (en) | 2009-10-15 | 2011-04-21 | Ibis Biosciences, Inc. | Multiple displacement amplification |
WO2018017880A1 (en) * | 2016-07-20 | 2018-01-25 | Management Revenue Group P.R., Llc | Kits and methods for detecting and treating gastrointestinal disorders and infections |
Family Cites Families (8)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP0272009B2 (de) * | 1986-11-24 | 2007-10-03 | Gen-Probe Incorporated | Nukleinsäuresonden zum Nachweis und/oder zur Quantifizierung von nicht-viralen Organismen |
AU1363688A (en) * | 1987-02-12 | 1988-09-14 | Sdi Diagnostics, Inc. | Test system, test device and method for detecting pathogenic organisms and antibiotic resistance genes in body fluids |
WO1990015157A1 (en) * | 1989-05-31 | 1990-12-13 | Gene-Trak Systems | Universal eubacteria nucleic acid probes and methods |
CA2025181A1 (en) * | 1989-10-12 | 1991-04-13 | William G. Weisburg | Nucleic acid probes and methods for detecting fungi |
US5593836A (en) * | 1993-05-14 | 1997-01-14 | Niemiec; John T. | Primers and probes for detecting Pneumocystis carinii |
ES2150103T3 (es) * | 1995-01-19 | 2000-11-16 | Gen Probe Inc | Oligonucleotidos de amplificacion de acido nucleico y sondas para borrelia asociados con la enfermedad de lyme. |
WO1997029212A1 (en) * | 1996-02-08 | 1997-08-14 | Affymetrix, Inc. | Chip-based speciation and phenotypic characterization of microorganisms |
AU5716098A (en) * | 1996-12-23 | 1998-07-17 | University Of Chicago, The | Customized oligonucleotide microchips as multiple biosensors |
-
2000
- 2000-05-03 EP EP00928890A patent/EP1177318B1/de not_active Expired - Lifetime
- 2000-05-03 CA CA2370255A patent/CA2370255C/en not_active Expired - Fee Related
- 2000-05-03 AT AT08151292T patent/ATE437242T1/de not_active IP Right Cessation
- 2000-05-03 AT AT00928890T patent/ATE386139T1/de not_active IP Right Cessation
- 2000-05-03 DE DE60038015T patent/DE60038015T2/de not_active Expired - Lifetime
- 2000-05-03 AU AU47056/00A patent/AU778230B2/en not_active Ceased
- 2000-05-03 JP JP2000615411A patent/JP2002542808A/ja not_active Ceased
- 2000-05-03 WO PCT/US2000/012421 patent/WO2000066789A2/en active IP Right Grant
- 2000-05-03 DE DE60042623T patent/DE60042623D1/de not_active Expired - Lifetime
-
2005
- 2005-02-25 AU AU2005200846A patent/AU2005200846B2/en not_active Ceased
Also Published As
Publication number | Publication date |
---|---|
EP1177318A2 (de) | 2002-02-06 |
DE60038015D1 (de) | 2008-03-27 |
WO2000066789A2 (en) | 2000-11-09 |
DE60038015T2 (de) | 2009-02-12 |
JP2002542808A (ja) | 2002-12-17 |
CA2370255A1 (en) | 2000-11-09 |
EP1177318B1 (de) | 2008-02-13 |
ATE437242T1 (de) | 2009-08-15 |
WO2000066789A3 (en) | 2001-05-03 |
ATE386139T1 (de) | 2008-03-15 |
CA2370255C (en) | 2011-03-29 |
AU778230B2 (en) | 2004-11-25 |
AU4705600A (en) | 2000-11-17 |
AU2005200846A1 (en) | 2005-03-24 |
AU2005200846B2 (en) | 2007-08-16 |
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Legal Events
Date | Code | Title | Description |
---|---|---|---|
8364 | No opposition during term of opposition |