US20050142648A1 - Modified yeast consuming L-arabinose - Google Patents
Modified yeast consuming L-arabinose Download PDFInfo
- Publication number
- US20050142648A1 US20050142648A1 US10/983,951 US98395104A US2005142648A1 US 20050142648 A1 US20050142648 A1 US 20050142648A1 US 98395104 A US98395104 A US 98395104A US 2005142648 A1 US2005142648 A1 US 2005142648A1
- Authority
- US
- United States
- Prior art keywords
- gene
- arabinose
- strain
- yeast
- ethanol
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Abandoned
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
- C12N15/52—Genes encoding for enzymes or proenzymes
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P7/00—Preparation of oxygen-containing organic compounds
- C12P7/02—Preparation of oxygen-containing organic compounds containing a hydroxy group
- C12P7/04—Preparation of oxygen-containing organic compounds containing a hydroxy group acyclic
- C12P7/06—Ethanol, i.e. non-beverage
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
- Y02E—REDUCTION OF GREENHOUSE GAS [GHG] EMISSIONS, RELATED TO ENERGY GENERATION, TRANSMISSION OR DISTRIBUTION
- Y02E50/00—Technologies for the production of fuel of non-fossil origin
- Y02E50/10—Biofuels, e.g. bio-diesel
Definitions
- the present invention relates to a modified yeast strain, preferably a Saccharomyces cerevisiae, consuming L-arabinose while producing ethanol, as well as a method for producing ethanol.
- araA L-arabinose isomerase
- araB L-ribulokinase
- araD L-ribulose-5-P 4-epimerase
- transformants expressing the B. subtilis araA gene together with the E. coli genes araB and araD as well as the yeast GAL2 gene were incubated in liquid media (synthetic complete or synthetic complete/0.1% yeast extract/0.2% peptone) with L-arabinose as the sole carbon source for several weeks. After 4-5 days of incubation the transformants started to grow slowly in these media, in contrast to a strain containing only four empty vectors. Whenever the cells reached an OD 600 of 3-4, they were inoculated in fresh medium at an OD 600 of 0.3, and grown further. Growth became faster after 10 days. These observations indicate the occurrence of spontaneous suppressor mutations enabling the cells to use L-arabinose more efficiently. Otherwise, the cells might become somehow adapted to the use of L-arabinose.
- mutant transformants When the mutant transformants were selected for loss of their plasmids they were no longer able to grow on arabinose.
- the plasmids were re-isolated and amplified in E. coli.
- the re-isolated plasmids were transformed into a CEN.PK2-1C wild-type strain.
- the lag-phase on arabinose medium was significantly prolonged indicating that additional genomic mutations had occurred in the mutant transformants enabling them to grow efficiently on arabinose.
- Different combinations of original and re-isolated plasmids were transformed into the mutant JBY25 strain.
- the mutant strain was transformed with different combinations of re-isolated and empty plasmids (without any gene for L-arabinose metabolism).
- Transformants lacking the L-arabinose isomerase, the L-ribulokinase or the L-ribulose 5-P 4-epimerase but transformed with the other three re-isolated plasmids did not show any growth on L-arabinose indicating that these genes are absolutely necessary for the utilization of L-arabinose.
- Transformants lacking the overexpressed galactose permease are able to grow on L-arabinose medium, but with slightly decreased growth rates as compared to the mutant strain containing all four re-isolated plasmids, indicating that over-expression of a transporter is not necessary for growth on L-arabinose but can improve it.
- the mutant strain and also the wild-type strain each transformed with the four plasmids for L-arabinose metabolism were crossed with a haploid wild-type strain. Afterwards, growth on L-arabinose was investigated. The diploid mutant strain exhibited faster growth on L-arabinose than the diploid control strain. But the diploid mutant strain did not grow as well as the haploid mutant strain transformed with the four plasmids. The diploid mutant strain was sporulated and tetrade analysis was performed. The results indicate that there is more than one mutation in the genome of the strain with at least one being dominant and another one being recessive.
- the growth medium will contain about 20 g of L-arabinose/L. However, growth and production of ethanol will occur between 2 and 200 g/L. There is no need for further sugars, and thus L-arabinose can be used alone. It is possible that co-consumption of xylose and arabinose could work, but this has not been determined so far.
Landscapes
- Engineering & Computer Science (AREA)
- Genetics & Genomics (AREA)
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Wood Science & Technology (AREA)
- Zoology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biotechnology (AREA)
- Biomedical Technology (AREA)
- General Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Biochemistry (AREA)
- General Health & Medical Sciences (AREA)
- Molecular Biology (AREA)
- General Chemical & Material Sciences (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Physics & Mathematics (AREA)
- Biophysics (AREA)
- Plant Pathology (AREA)
- Micro-Organisms Or Cultivation Processes Thereof (AREA)
- Saccharide Compounds (AREA)
- Preparation Of Compounds By Using Micro-Organisms (AREA)
Priority Applications (3)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US10/983,951 US20050142648A1 (en) | 2002-05-08 | 2004-11-08 | Modified yeast consuming L-arabinose |
US11/498,002 US20060270008A1 (en) | 2002-05-08 | 2006-08-02 | Modified yeast consuming L-arabinose |
US12/325,630 US8691554B2 (en) | 2002-05-08 | 2008-12-01 | Modified yeast consuming L-arabinose |
Applications Claiming Priority (6)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
SE0201428A SE0201428D0 (sv) | 2002-05-08 | 2002-05-08 | A modified yeast consuming l-arabinose |
SE0201428-0 | 2002-05-08 | ||
SE0202090A SE0202090D0 (sv) | 2002-05-08 | 2002-07-04 | A modifierd yeast consuming L-arabinose |
SE0202090-7 | 2002-07-04 | ||
PCT/SE2003/000749 WO2003095627A1 (en) | 2002-05-08 | 2003-05-07 | A modified yeast consuming l-arabinose |
US10/983,951 US20050142648A1 (en) | 2002-05-08 | 2004-11-08 | Modified yeast consuming L-arabinose |
Related Parent Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/SE2003/000749 Continuation WO2003095627A1 (en) | 2002-05-08 | 2003-05-07 | A modified yeast consuming l-arabinose |
Related Child Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
US11/498,002 Continuation US20060270008A1 (en) | 2002-05-08 | 2006-08-02 | Modified yeast consuming L-arabinose |
Publications (1)
Publication Number | Publication Date |
---|---|
US20050142648A1 true US20050142648A1 (en) | 2005-06-30 |
Family
ID=26655701
Family Applications (3)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
US10/983,951 Abandoned US20050142648A1 (en) | 2002-05-08 | 2004-11-08 | Modified yeast consuming L-arabinose |
US11/498,002 Abandoned US20060270008A1 (en) | 2002-05-08 | 2006-08-02 | Modified yeast consuming L-arabinose |
US12/325,630 Active 2025-08-26 US8691554B2 (en) | 2002-05-08 | 2008-12-01 | Modified yeast consuming L-arabinose |
Family Applications After (2)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
US11/498,002 Abandoned US20060270008A1 (en) | 2002-05-08 | 2006-08-02 | Modified yeast consuming L-arabinose |
US12/325,630 Active 2025-08-26 US8691554B2 (en) | 2002-05-08 | 2008-12-01 | Modified yeast consuming L-arabinose |
Country Status (13)
Country | Link |
---|---|
US (3) | US20050142648A1 (de) |
EP (1) | EP1499708B2 (de) |
AT (1) | ATE315079T1 (de) |
AU (1) | AU2003228189A1 (de) |
BR (2) | BRPI0309836B1 (de) |
CA (1) | CA2483997C (de) |
DE (1) | DE60303127T3 (de) |
DK (1) | DK1499708T4 (de) |
ES (1) | ES2256742T5 (de) |
PT (1) | PT1499708E (de) |
SE (1) | SE0202090D0 (de) |
WO (1) | WO2003095627A1 (de) |
ZA (1) | ZA200408440B (de) |
Cited By (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2007143247A2 (en) * | 2006-06-02 | 2007-12-13 | Midwest Research Institute | Cloning and characterization of l-arabinose transporters from non-conventional yeast |
WO2007143245A2 (en) * | 2006-06-01 | 2007-12-13 | Midwest Research Institute | An l-arabinose fermenting yeast |
US20100151548A1 (en) * | 2007-04-05 | 2010-06-17 | Eckhard Boles | vector with codon-optimised genes for an arabinose metabolic pathway for arabinose conversion in yeast for ethanol production |
WO2017176875A1 (en) | 2016-04-08 | 2017-10-12 | E I Du Pont De Nemours And Company | Arabinose isomerases for yeast |
US10947515B2 (en) | 2015-03-16 | 2021-03-16 | Dsm Ip Assets B.V. | UDP-glycosyltransferases |
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EP1863901A1 (de) | 2005-03-11 | 2007-12-12 | Forskarpatent i Syd AB | Arabinose und xylose vergärende saccharomyces cerevisiae-stämme |
JP2010501013A (ja) | 2006-08-18 | 2010-01-14 | アイオジェン エナジー コーポレイション | 水性糖ストリームから有機塩又は有機酸を得る方法 |
AU2007302867B2 (en) | 2006-10-02 | 2013-11-07 | Dsm Ip Assets B.V. | Metabolic engineering of arabinose-fermenting yeast cells |
SE530337C2 (sv) * | 2007-06-12 | 2008-05-06 | Loxystem Ab | Förfarande, system och lås för att bestämma den relativa positionen för ett containerhörnlås och/eller en grupp av containerhörnlås i förhållande till andra containerhörnlås |
PT103780A (pt) * | 2007-07-06 | 2009-01-06 | Univ Nova De Lisboa | Sequência de dna que codifica um transportador específico para l- arabinose, molécula de cdna, plasmideo compreendendo a referida sequência de dna, célula hospedeira transformada com esse plamídeo e sua aplicação. |
EP2171038A2 (de) * | 2007-07-19 | 2010-04-07 | Royal Nedalco B.V. | Neue arabinose vergärende eukaryontische zellen |
CN104017741B (zh) * | 2008-03-07 | 2018-03-09 | 帝斯曼知识产权资产管理有限公司 | 发酵戊糖的细胞 |
WO2010059539A2 (en) | 2008-11-20 | 2010-05-27 | New England Biolabs, Inc. | Genetically engineered yeast for the production of biofuels |
EP3415613A1 (de) | 2008-12-24 | 2018-12-19 | DSM IP Assets B.V. | Xylose-isomerase-gene und deren verwendung bei der fermentation von pentosezucker |
US20110143408A1 (en) * | 2009-06-18 | 2011-06-16 | E. I. Du Pont De Nemours And Company | Zymomonas with improved arabinose utilization |
UA108853C2 (uk) | 2009-07-10 | 2015-06-25 | Спосіб ферментації галактози | |
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FR2968313B1 (fr) | 2010-12-03 | 2014-10-10 | Lesaffre & Cie | Procede de preparation d'une levure industrielle, levure industrielle et application a la production d'ethanol a partir d'au moins un pentose |
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BR112013026193A2 (pt) | 2011-04-11 | 2020-11-10 | Cargill, Incorporated | composições e métodos para a produção aumentada de etanol a partir de biomassa |
US20140141473A1 (en) * | 2011-04-22 | 2014-05-22 | Dsm Ip Assets B.V. | Yeast cell capable of converting sugars including arabinose and xlose |
EP2546336A1 (de) | 2011-07-11 | 2013-01-16 | DSM IP Assets B.V. | Hefestränge, die Uronsäure verbrauchen und Fermentierungsprodukte wie Ethanol herstellen |
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Family Cites Families (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5843760A (en) * | 1994-04-15 | 1998-12-01 | Midwest Research Institute | Single zymomonas mobilis strain for xylose and arabinose fermentation |
-
2002
- 2002-07-04 SE SE0202090A patent/SE0202090D0/xx unknown
-
2003
- 2003-05-07 CA CA2483997A patent/CA2483997C/en not_active Expired - Lifetime
- 2003-05-07 BR BRPI0309836A patent/BRPI0309836B1/pt not_active IP Right Cessation
- 2003-05-07 PT PT03725947T patent/PT1499708E/pt unknown
- 2003-05-07 DK DK03725947.0T patent/DK1499708T4/da active
- 2003-05-07 DE DE60303127T patent/DE60303127T3/de not_active Expired - Lifetime
- 2003-05-07 AU AU2003228189A patent/AU2003228189A1/en not_active Abandoned
- 2003-05-07 AT AT03725947T patent/ATE315079T1/de not_active IP Right Cessation
- 2003-05-07 ES ES03725947T patent/ES2256742T5/es not_active Expired - Lifetime
- 2003-05-07 EP EP03725947A patent/EP1499708B2/de not_active Expired - Lifetime
- 2003-05-07 WO PCT/SE2003/000749 patent/WO2003095627A1/en not_active Application Discontinuation
- 2003-05-07 BR BR0309836-2A patent/BR0309836A/pt not_active IP Right Cessation
-
2004
- 2004-10-19 ZA ZA2004/08440A patent/ZA200408440B/en unknown
- 2004-11-08 US US10/983,951 patent/US20050142648A1/en not_active Abandoned
-
2006
- 2006-08-02 US US11/498,002 patent/US20060270008A1/en not_active Abandoned
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- 2008-12-01 US US12/325,630 patent/US8691554B2/en active Active
Cited By (14)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US8841090B2 (en) | 2006-06-01 | 2014-09-23 | Alliance For Sustainable Energy, Llc | L-arabinose fermenting yeast |
US7846712B2 (en) | 2006-06-01 | 2010-12-07 | Alliance For Sustainable Energy, Llc | L-arabinose fermenting yeast |
WO2007143245A3 (en) * | 2006-06-01 | 2008-02-07 | Midwest Research Inst | An l-arabinose fermenting yeast |
US8372626B2 (en) | 2006-06-01 | 2013-02-12 | Alliance For Sustainable Energy, Llc | L-arabinose fermenting yeast |
US20100144041A1 (en) * | 2006-06-01 | 2010-06-10 | Midwest Research Institute | L-Arabinose Fermenting Yeast |
WO2007143245A2 (en) * | 2006-06-01 | 2007-12-13 | Midwest Research Institute | An l-arabinose fermenting yeast |
WO2007143247A3 (en) * | 2006-06-02 | 2008-02-21 | Midwest Research Inst | Cloning and characterization of l-arabinose transporters from non-conventional yeast |
WO2007143247A2 (en) * | 2006-06-02 | 2007-12-13 | Midwest Research Institute | Cloning and characterization of l-arabinose transporters from non-conventional yeast |
US20100151548A1 (en) * | 2007-04-05 | 2010-06-17 | Eckhard Boles | vector with codon-optimised genes for an arabinose metabolic pathway for arabinose conversion in yeast for ethanol production |
US8993301B2 (en) | 2007-04-05 | 2015-03-31 | Butalco Gmbh | Vector with codon-optimised genes for an arabinose metabolic pathway for arabinose conversion in yeast for ethanol production |
US8753862B2 (en) * | 2007-04-05 | 2014-06-17 | Butalco Gmbh | Vector with codon-optimised genes for an arabinose metabolic pathway for arabinose conversion in yeast for ethanol production |
US10947515B2 (en) | 2015-03-16 | 2021-03-16 | Dsm Ip Assets B.V. | UDP-glycosyltransferases |
US11459548B2 (en) | 2015-03-16 | 2022-10-04 | Dsm Ip Assets B.V. | UDP-glycosyltransferases |
WO2017176875A1 (en) | 2016-04-08 | 2017-10-12 | E I Du Pont De Nemours And Company | Arabinose isomerases for yeast |
Also Published As
Publication number | Publication date |
---|---|
US20060270008A1 (en) | 2006-11-30 |
US20090215138A1 (en) | 2009-08-27 |
DK1499708T3 (da) | 2006-05-22 |
DE60303127D1 (de) | 2006-03-30 |
EP1499708B1 (de) | 2006-01-04 |
ES2256742T5 (es) | 2012-06-05 |
CA2483997C (en) | 2013-04-02 |
CA2483997A1 (en) | 2003-11-20 |
AU2003228189A1 (en) | 2003-11-11 |
SE0202090D0 (sv) | 2002-07-04 |
EP1499708A1 (de) | 2005-01-26 |
ZA200408440B (en) | 2005-07-27 |
WO2003095627A1 (en) | 2003-11-20 |
ES2256742T3 (es) | 2006-07-16 |
BRPI0309836B1 (pt) | 2019-08-27 |
DE60303127T3 (de) | 2012-07-19 |
PT1499708E (pt) | 2006-05-31 |
DE60303127T2 (de) | 2006-09-14 |
DK1499708T4 (da) | 2012-05-07 |
EP1499708B2 (de) | 2012-02-22 |
BR0309836A (pt) | 2005-03-01 |
ATE315079T1 (de) | 2006-02-15 |
US8691554B2 (en) | 2014-04-08 |
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