US20050142648A1 - Modified yeast consuming L-arabinose - Google Patents

Modified yeast consuming L-arabinose Download PDF

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Publication number
US20050142648A1
US20050142648A1 US10/983,951 US98395104A US2005142648A1 US 20050142648 A1 US20050142648 A1 US 20050142648A1 US 98395104 A US98395104 A US 98395104A US 2005142648 A1 US2005142648 A1 US 2005142648A1
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United States
Prior art keywords
gene
arabinose
strain
yeast
ethanol
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Abandoned
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US10/983,951
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English (en)
Inventor
Eckhard Boles
Jessica Becker
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Forskarpatent I SYD AB
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Forskarpatent I SYD AB
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Priority claimed from SE0201428A external-priority patent/SE0201428D0/xx
Application filed by Forskarpatent I SYD AB filed Critical Forskarpatent I SYD AB
Priority to US10/983,951 priority Critical patent/US20050142648A1/en
Assigned to FORSKARPATENT I SYD AB reassignment FORSKARPATENT I SYD AB ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: BECKER, JESSICA, BOLES, ECKHARD
Publication of US20050142648A1 publication Critical patent/US20050142648A1/en
Priority to US11/498,002 priority patent/US20060270008A1/en
Priority to US12/325,630 priority patent/US8691554B2/en
Abandoned legal-status Critical Current

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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/11DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
    • C12N15/52Genes encoding for enzymes or proenzymes
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12PFERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P7/00Preparation of oxygen-containing organic compounds
    • C12P7/02Preparation of oxygen-containing organic compounds containing a hydroxy group
    • C12P7/04Preparation of oxygen-containing organic compounds containing a hydroxy group acyclic
    • C12P7/06Ethanol, i.e. non-beverage
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02EREDUCTION OF GREENHOUSE GAS [GHG] EMISSIONS, RELATED TO ENERGY GENERATION, TRANSMISSION OR DISTRIBUTION
    • Y02E50/00Technologies for the production of fuel of non-fossil origin
    • Y02E50/10Biofuels, e.g. bio-diesel

Definitions

  • the present invention relates to a modified yeast strain, preferably a Saccharomyces cerevisiae, consuming L-arabinose while producing ethanol, as well as a method for producing ethanol.
  • araA L-arabinose isomerase
  • araB L-ribulokinase
  • araD L-ribulose-5-P 4-epimerase
  • transformants expressing the B. subtilis araA gene together with the E. coli genes araB and araD as well as the yeast GAL2 gene were incubated in liquid media (synthetic complete or synthetic complete/0.1% yeast extract/0.2% peptone) with L-arabinose as the sole carbon source for several weeks. After 4-5 days of incubation the transformants started to grow slowly in these media, in contrast to a strain containing only four empty vectors. Whenever the cells reached an OD 600 of 3-4, they were inoculated in fresh medium at an OD 600 of 0.3, and grown further. Growth became faster after 10 days. These observations indicate the occurrence of spontaneous suppressor mutations enabling the cells to use L-arabinose more efficiently. Otherwise, the cells might become somehow adapted to the use of L-arabinose.
  • mutant transformants When the mutant transformants were selected for loss of their plasmids they were no longer able to grow on arabinose.
  • the plasmids were re-isolated and amplified in E. coli.
  • the re-isolated plasmids were transformed into a CEN.PK2-1C wild-type strain.
  • the lag-phase on arabinose medium was significantly prolonged indicating that additional genomic mutations had occurred in the mutant transformants enabling them to grow efficiently on arabinose.
  • Different combinations of original and re-isolated plasmids were transformed into the mutant JBY25 strain.
  • the mutant strain was transformed with different combinations of re-isolated and empty plasmids (without any gene for L-arabinose metabolism).
  • Transformants lacking the L-arabinose isomerase, the L-ribulokinase or the L-ribulose 5-P 4-epimerase but transformed with the other three re-isolated plasmids did not show any growth on L-arabinose indicating that these genes are absolutely necessary for the utilization of L-arabinose.
  • Transformants lacking the overexpressed galactose permease are able to grow on L-arabinose medium, but with slightly decreased growth rates as compared to the mutant strain containing all four re-isolated plasmids, indicating that over-expression of a transporter is not necessary for growth on L-arabinose but can improve it.
  • the mutant strain and also the wild-type strain each transformed with the four plasmids for L-arabinose metabolism were crossed with a haploid wild-type strain. Afterwards, growth on L-arabinose was investigated. The diploid mutant strain exhibited faster growth on L-arabinose than the diploid control strain. But the diploid mutant strain did not grow as well as the haploid mutant strain transformed with the four plasmids. The diploid mutant strain was sporulated and tetrade analysis was performed. The results indicate that there is more than one mutation in the genome of the strain with at least one being dominant and another one being recessive.
  • the growth medium will contain about 20 g of L-arabinose/L. However, growth and production of ethanol will occur between 2 and 200 g/L. There is no need for further sugars, and thus L-arabinose can be used alone. It is possible that co-consumption of xylose and arabinose could work, but this has not been determined so far.

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  • Engineering & Computer Science (AREA)
  • Genetics & Genomics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Wood Science & Technology (AREA)
  • Zoology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Biomedical Technology (AREA)
  • General Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Molecular Biology (AREA)
  • General Chemical & Material Sciences (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Physics & Mathematics (AREA)
  • Biophysics (AREA)
  • Plant Pathology (AREA)
  • Micro-Organisms Or Cultivation Processes Thereof (AREA)
  • Saccharide Compounds (AREA)
  • Preparation Of Compounds By Using Micro-Organisms (AREA)
US10/983,951 2002-05-08 2004-11-08 Modified yeast consuming L-arabinose Abandoned US20050142648A1 (en)

Priority Applications (3)

Application Number Priority Date Filing Date Title
US10/983,951 US20050142648A1 (en) 2002-05-08 2004-11-08 Modified yeast consuming L-arabinose
US11/498,002 US20060270008A1 (en) 2002-05-08 2006-08-02 Modified yeast consuming L-arabinose
US12/325,630 US8691554B2 (en) 2002-05-08 2008-12-01 Modified yeast consuming L-arabinose

Applications Claiming Priority (6)

Application Number Priority Date Filing Date Title
SE0201428A SE0201428D0 (sv) 2002-05-08 2002-05-08 A modified yeast consuming l-arabinose
SE0201428-0 2002-05-08
SE0202090A SE0202090D0 (sv) 2002-05-08 2002-07-04 A modifierd yeast consuming L-arabinose
SE0202090-7 2002-07-04
PCT/SE2003/000749 WO2003095627A1 (en) 2002-05-08 2003-05-07 A modified yeast consuming l-arabinose
US10/983,951 US20050142648A1 (en) 2002-05-08 2004-11-08 Modified yeast consuming L-arabinose

Related Parent Applications (1)

Application Number Title Priority Date Filing Date
PCT/SE2003/000749 Continuation WO2003095627A1 (en) 2002-05-08 2003-05-07 A modified yeast consuming l-arabinose

Related Child Applications (1)

Application Number Title Priority Date Filing Date
US11/498,002 Continuation US20060270008A1 (en) 2002-05-08 2006-08-02 Modified yeast consuming L-arabinose

Publications (1)

Publication Number Publication Date
US20050142648A1 true US20050142648A1 (en) 2005-06-30

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Application Number Title Priority Date Filing Date
US10/983,951 Abandoned US20050142648A1 (en) 2002-05-08 2004-11-08 Modified yeast consuming L-arabinose
US11/498,002 Abandoned US20060270008A1 (en) 2002-05-08 2006-08-02 Modified yeast consuming L-arabinose
US12/325,630 Active 2025-08-26 US8691554B2 (en) 2002-05-08 2008-12-01 Modified yeast consuming L-arabinose

Family Applications After (2)

Application Number Title Priority Date Filing Date
US11/498,002 Abandoned US20060270008A1 (en) 2002-05-08 2006-08-02 Modified yeast consuming L-arabinose
US12/325,630 Active 2025-08-26 US8691554B2 (en) 2002-05-08 2008-12-01 Modified yeast consuming L-arabinose

Country Status (13)

Country Link
US (3) US20050142648A1 (de)
EP (1) EP1499708B2 (de)
AT (1) ATE315079T1 (de)
AU (1) AU2003228189A1 (de)
BR (2) BRPI0309836B1 (de)
CA (1) CA2483997C (de)
DE (1) DE60303127T3 (de)
DK (1) DK1499708T4 (de)
ES (1) ES2256742T5 (de)
PT (1) PT1499708E (de)
SE (1) SE0202090D0 (de)
WO (1) WO2003095627A1 (de)
ZA (1) ZA200408440B (de)

Cited By (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2007143247A2 (en) * 2006-06-02 2007-12-13 Midwest Research Institute Cloning and characterization of l-arabinose transporters from non-conventional yeast
WO2007143245A2 (en) * 2006-06-01 2007-12-13 Midwest Research Institute An l-arabinose fermenting yeast
US20100151548A1 (en) * 2007-04-05 2010-06-17 Eckhard Boles vector with codon-optimised genes for an arabinose metabolic pathway for arabinose conversion in yeast for ethanol production
WO2017176875A1 (en) 2016-04-08 2017-10-12 E I Du Pont De Nemours And Company Arabinose isomerases for yeast
US10947515B2 (en) 2015-03-16 2021-03-16 Dsm Ip Assets B.V. UDP-glycosyltransferases

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EP1863901A1 (de) 2005-03-11 2007-12-12 Forskarpatent i Syd AB Arabinose und xylose vergärende saccharomyces cerevisiae-stämme
JP2010501013A (ja) 2006-08-18 2010-01-14 アイオジェン エナジー コーポレイション 水性糖ストリームから有機塩又は有機酸を得る方法
AU2007302867B2 (en) 2006-10-02 2013-11-07 Dsm Ip Assets B.V. Metabolic engineering of arabinose-fermenting yeast cells
SE530337C2 (sv) * 2007-06-12 2008-05-06 Loxystem Ab Förfarande, system och lås för att bestämma den relativa positionen för ett containerhörnlås och/eller en grupp av containerhörnlås i förhållande till andra containerhörnlås
PT103780A (pt) * 2007-07-06 2009-01-06 Univ Nova De Lisboa Sequência de dna que codifica um transportador específico para l- arabinose, molécula de cdna, plasmideo compreendendo a referida sequência de dna, célula hospedeira transformada com esse plamídeo e sua aplicação.
EP2171038A2 (de) * 2007-07-19 2010-04-07 Royal Nedalco B.V. Neue arabinose vergärende eukaryontische zellen
CN104017741B (zh) * 2008-03-07 2018-03-09 帝斯曼知识产权资产管理有限公司 发酵戊糖的细胞
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US20110143408A1 (en) * 2009-06-18 2011-06-16 E. I. Du Pont De Nemours And Company Zymomonas with improved arabinose utilization
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DK1499708T3 (da) 2006-05-22
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EP1499708B1 (de) 2006-01-04
ES2256742T5 (es) 2012-06-05
CA2483997C (en) 2013-04-02
CA2483997A1 (en) 2003-11-20
AU2003228189A1 (en) 2003-11-11
SE0202090D0 (sv) 2002-07-04
EP1499708A1 (de) 2005-01-26
ZA200408440B (en) 2005-07-27
WO2003095627A1 (en) 2003-11-20
ES2256742T3 (es) 2006-07-16
BRPI0309836B1 (pt) 2019-08-27
DE60303127T3 (de) 2012-07-19
PT1499708E (pt) 2006-05-31
DE60303127T2 (de) 2006-09-14
DK1499708T4 (da) 2012-05-07
EP1499708B2 (de) 2012-02-22
BR0309836A (pt) 2005-03-01
ATE315079T1 (de) 2006-02-15
US8691554B2 (en) 2014-04-08

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