TWI269988B - Information processing method, apparatus and system using nucleotide sequence-related information, and recording medium - Google Patents
Information processing method, apparatus and system using nucleotide sequence-related information, and recording medium Download PDFInfo
- Publication number
- TWI269988B TWI269988B TW091111099A TW91111099A TWI269988B TW I269988 B TWI269988 B TW I269988B TW 091111099 A TW091111099 A TW 091111099A TW 91111099 A TW91111099 A TW 91111099A TW I269988 B TWI269988 B TW I269988B
- Authority
- TW
- Taiwan
- Prior art keywords
- information
- nucleotide sequence
- location
- processing
- implied
- Prior art date
Links
Classifications
-
- G—PHYSICS
- G06—COMPUTING OR CALCULATING; COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F17/00—Digital computing or data processing equipment or methods, specially adapted for specific functions
- G06F17/40—Data acquisition and logging
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16H—HEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
- G16H10/00—ICT specially adapted for the handling or processing of patient-related medical or healthcare data
- G16H10/40—ICT specially adapted for the handling or processing of patient-related medical or healthcare data for data related to laboratory analysis, e.g. patient specimen analysis
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16H—HEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
- G16H10/00—ICT specially adapted for the handling or processing of patient-related medical or healthcare data
- G16H10/60—ICT specially adapted for the handling or processing of patient-related medical or healthcare data for patient-specific data, e.g. for electronic patient records
Landscapes
- Engineering & Computer Science (AREA)
- Physics & Mathematics (AREA)
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Medical Informatics (AREA)
- General Health & Medical Sciences (AREA)
- Theoretical Computer Science (AREA)
- Bioinformatics & Computational Biology (AREA)
- Biophysics (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Biotechnology (AREA)
- Evolutionary Biology (AREA)
- Analytical Chemistry (AREA)
- Chemical & Material Sciences (AREA)
- Genetics & Genomics (AREA)
- Molecular Biology (AREA)
- Epidemiology (AREA)
- Public Health (AREA)
- Primary Health Care (AREA)
- General Engineering & Computer Science (AREA)
- Databases & Information Systems (AREA)
- Software Systems (AREA)
- General Physics & Mathematics (AREA)
- Mathematical Physics (AREA)
- Data Mining & Analysis (AREA)
- Computer Hardware Design (AREA)
- Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
- Management, Administration, Business Operations System, And Electronic Commerce (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Medical Treatment And Welfare Office Work (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
- Investigating Or Analysing Biological Materials (AREA)
- Micro-Organisms Or Cultivation Processes Thereof (AREA)
Applications Claiming Priority (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| JP2001156943 | 2001-05-25 |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| TWI269988B true TWI269988B (en) | 2007-01-01 |
Family
ID=19000881
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| TW091111099A TWI269988B (en) | 2001-05-25 | 2002-05-24 | Information processing method, apparatus and system using nucleotide sequence-related information, and recording medium |
Country Status (7)
| Country | Link |
|---|---|
| US (6) | US7912650B2 (https=) |
| EP (1) | EP1260927A3 (https=) |
| JP (5) | JP3862608B2 (https=) |
| KR (2) | KR100832077B1 (https=) |
| CN (4) | CN102737167A (https=) |
| CA (2) | CA2387277C (https=) |
| TW (1) | TWI269988B (https=) |
Families Citing this family (25)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CA2387277C (en) * | 2001-05-25 | 2015-03-03 | Hitachi, Ltd. | Information processing system using nucleotide sequence-related information |
| US8126655B2 (en) | 2001-11-22 | 2012-02-28 | Hitachi, Ltd. | Information processing system using information on base sequence |
| JP4266008B2 (ja) * | 2002-11-20 | 2009-05-20 | 株式会社日立製作所 | 塩基配列関連情報を用いた情報処理システム |
| US20060149502A1 (en) * | 2003-02-27 | 2006-07-06 | Takamasa Kato | Information processing system using base sequence relevant information |
| US9827314B2 (en) | 2003-12-08 | 2017-11-28 | Mars, Incorporated | Edible compositions which are adapted for use by a companion animal |
| US7264874B2 (en) | 2004-12-22 | 2007-09-04 | Aps Laboratory | Preparation of metal chalcogenide nanoparticles and nanocomposites therefrom |
| JP5038671B2 (ja) * | 2006-09-25 | 2012-10-03 | 株式会社東芝 | 検査項目選定装置、検査項目選定方法、及び検査項目選定プログラム |
| JP4791408B2 (ja) * | 2007-05-01 | 2011-10-12 | 株式会社日立製作所 | 塩基配列関連情報を用いた情報処理システム |
| WO2010038032A1 (en) * | 2008-10-03 | 2010-04-08 | Mars, Incorporated | Genetic test for liver copper accumulation in dogs and low copper pet diet |
| KR102042253B1 (ko) | 2010-05-25 | 2019-11-07 | 더 리젠츠 오브 더 유니버시티 오브 캘리포니아 | Bambam:고처리율 서열분석 데이터의 병렬 비교 분석 |
| US9646134B2 (en) | 2010-05-25 | 2017-05-09 | The Regents Of The University Of California | Bambam: parallel comparative analysis of high-throughput sequencing data |
| JP5117550B2 (ja) * | 2010-07-26 | 2013-01-16 | 株式会社日立製作所 | 塩基配列関連情報を用いた情報処理システム |
| US8898149B2 (en) | 2011-05-06 | 2014-11-25 | The Translational Genomics Research Institute | Biological data structure having multi-lateral, multi-scalar, and multi-dimensional relationships between molecular features and other data |
| WO2012158621A1 (en) | 2011-05-13 | 2012-11-22 | Indiana University Reaserch And Technology Coporation | Secure and scalable mapping of human sequencing reads on hybrid clouds |
| GB201120989D0 (en) | 2011-12-06 | 2012-01-18 | Mars Inc | Genetic test |
| KR101419753B1 (ko) * | 2012-10-16 | 2014-07-17 | 안형준 | 개인 단일 염기 다형성에 기반한 개인별 부작용 최소화 약물 검색 시스템 및 그 방법 |
| US9784656B2 (en) * | 2014-03-10 | 2017-10-10 | Cool Clubs, LLC | Methods and apparatus for measuring properties of a cantilevered member |
| US10395759B2 (en) | 2015-05-18 | 2019-08-27 | Regeneron Pharmaceuticals, Inc. | Methods and systems for copy number variant detection |
| FR3045874B1 (fr) * | 2015-12-18 | 2019-06-14 | Axlr, Satt Du Languedoc Roussillon | Architecture pour l'analyse de donnees genomiques |
| US12071669B2 (en) | 2016-02-12 | 2024-08-27 | Regeneron Pharmaceuticals, Inc. | Methods and systems for detection of abnormal karyotypes |
| IL266197B2 (en) * | 2016-10-24 | 2024-03-01 | Geneinfosec Inc | Hiding information contained within nucleic acids |
| JP6776937B2 (ja) * | 2017-02-20 | 2020-10-28 | 富士通株式会社 | 情報処理装置、方法及びプログラム |
| CN107103207B (zh) * | 2017-04-05 | 2020-07-03 | 浙江大学 | 基于病例多组学变异特征的精准医学知识搜索系统及实现方法 |
| EP4513497A3 (en) * | 2018-02-16 | 2025-05-28 | Illumina, Inc. | Systems and methods for correlated error event mitigation for variant calling |
| WO2022009342A1 (ja) | 2020-07-08 | 2022-01-13 | 富士通株式会社 | 情報処理プログラム、情報処理方法および情報処理装置 |
Family Cites Families (36)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| JPH04265569A (ja) * | 1991-02-19 | 1992-09-21 | Canon Inc | 音声信号記録装置及び再生装置 |
| US5834189A (en) | 1994-07-08 | 1998-11-10 | Visible Genetics Inc. | Method for evaluation of polymorphic genetic sequences, and the use thereof in identification of HLA types |
| US5523208A (en) | 1994-11-30 | 1996-06-04 | The Board Of Trustees Of The University Of Kentucky | Method to discover genetic coding regions for complementary interacting proteins by scanning DNA sequence data banks |
| US5867402A (en) * | 1995-06-23 | 1999-02-02 | The United States Of America As Represented By The Department Of Health And Human Services | Computational analysis of nucleic acid information defines binding sites |
| JP2000508912A (ja) * | 1996-04-19 | 2000-07-18 | スペクトラ バイオメディカル,インコーポレイテッド | 多型形態と複数の表現型との相関付け |
| JPH10151125A (ja) | 1996-11-21 | 1998-06-09 | Corp Miyuki:Kk | Dnaによる人物識別システム |
| US5970500A (en) | 1996-12-12 | 1999-10-19 | Incyte Pharmaceuticals, Inc. | Database and system for determining, storing and displaying gene locus information |
| JPH11353404A (ja) * | 1998-06-11 | 1999-12-24 | Hitachi Ltd | 電子カルテシステム |
| JP2000067139A (ja) * | 1998-08-25 | 2000-03-03 | Hitachi Ltd | 電子カルテシステム |
| EP1044417B1 (en) * | 1998-10-30 | 2002-12-11 | International Business Machines Corporation | Methods and apparatus for performing sequence homology detection |
| AU5638600A (en) * | 1999-06-25 | 2001-01-31 | Genaissance Pharmaceuticals, Inc. | Methods for obtaining and using haplotype data |
| US6931396B1 (en) * | 1999-06-29 | 2005-08-16 | Gene Logic Inc. | Biological data processing |
| US6424969B1 (en) * | 1999-07-20 | 2002-07-23 | Inmentia, Inc. | System and method for organizing data |
| US6470277B1 (en) * | 1999-07-30 | 2002-10-22 | Agy Therapeutics, Inc. | Techniques for facilitating identification of candidate genes |
| CA2381226A1 (en) * | 1999-08-05 | 2001-02-15 | Takeda Chemical Industries, Ltd. | Method of recording gene analysis data |
| AU6939700A (en) * | 1999-08-27 | 2001-03-26 | Pluvita Corporation | System and method for genomic and proteomic human disease assessment via expression profile comparison |
| AU1367201A (en) * | 1999-10-01 | 2001-05-10 | Orchid Biosciences, Inc. | Method and system for providing genotype clinical information over a computer network |
| US6287254B1 (en) * | 1999-11-02 | 2001-09-11 | W. Jean Dodds | Animal health diagnosis |
| WO2001028415A1 (en) * | 1999-10-15 | 2001-04-26 | Dodds W Jean | Animal health diagnosis |
| US6640211B1 (en) | 1999-10-22 | 2003-10-28 | First Genetic Trust Inc. | Genetic profiling and banking system and method |
| GB2363874B (en) * | 1999-11-06 | 2004-08-04 | Dennis Sunga Fernandez | Bioinformatic transaction scheme |
| GB0004232D0 (en) | 2000-02-24 | 2000-04-12 | Zeneca Ltd | Diagnostic method |
| US20030208454A1 (en) | 2000-03-16 | 2003-11-06 | Rienhoff Hugh Y. | Method and system for populating a database for further medical characterization |
| US6847995B1 (en) * | 2000-03-30 | 2005-01-25 | United Devices, Inc. | Security architecture for distributed processing systems and associated method |
| EP1167971B1 (en) * | 2000-04-17 | 2007-02-07 | Nec Corporation | Method and system for providing a home health care service |
| US20020010552A1 (en) * | 2000-05-26 | 2002-01-24 | Hugh Rienhoff | System for genetically characterizing an individual for evaluation using genetic and phenotypic variation over a wide area network |
| JP2002024416A (ja) | 2000-07-04 | 2002-01-25 | Sony Corp | Dna情報管理システム及びdna情報管理方法 |
| JP3440270B2 (ja) | 2000-12-18 | 2003-08-25 | エヌシーアンドエス株式会社 | 生理現象関連遺伝子情報の提供装置、その提供方法及びその提供を行うためのプログラムを格納した記録媒体 |
| US20030211501A1 (en) * | 2001-04-18 | 2003-11-13 | Stephens J. Claiborne | Method and system for determining haplotypes from a collection of polymorphisms |
| JP2002318858A (ja) | 2001-04-19 | 2002-10-31 | Toshitada Kameda | 医療計画作成支援システム及びコンピュータプログラム |
| CA2387277C (en) * | 2001-05-25 | 2015-03-03 | Hitachi, Ltd. | Information processing system using nucleotide sequence-related information |
| WO2003009210A1 (en) * | 2001-07-18 | 2003-01-30 | Gene Logic, Inc. | Methods of providing customized gene annotation reports |
| US20030087244A1 (en) * | 2001-10-09 | 2003-05-08 | Vitivity, Inc | Diagnosis and treatment of vascular disease |
| US8126655B2 (en) * | 2001-11-22 | 2012-02-28 | Hitachi, Ltd. | Information processing system using information on base sequence |
| JP3677258B2 (ja) * | 2002-07-15 | 2005-07-27 | 株式会社日立製作所 | 塩基配列関連情報を用いた情報処理システム |
| WO2004046996A1 (ja) * | 2002-11-18 | 2004-06-03 | Hitachi, Ltd. | 塩基配列関連情報を用いた情報処理システム |
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2002
- 2002-05-23 CA CA2387277A patent/CA2387277C/en not_active Expired - Lifetime
- 2002-05-23 CA CA2872499A patent/CA2872499C/en not_active Expired - Lifetime
- 2002-05-24 CN CN2012100961014A patent/CN102737167A/zh active Pending
- 2002-05-24 CN CNA2005100058662A patent/CN1645401A/zh active Pending
- 2002-05-24 JP JP2002150802A patent/JP3862608B2/ja not_active Expired - Lifetime
- 2002-05-24 US US10/153,691 patent/US7912650B2/en not_active Expired - Fee Related
- 2002-05-24 CN CN201210033478.5A patent/CN102637245B/zh not_active Expired - Lifetime
- 2002-05-24 KR KR1020020028907A patent/KR100832077B1/ko not_active Expired - Fee Related
- 2002-05-24 TW TW091111099A patent/TWI269988B/zh not_active IP Right Cessation
- 2002-05-24 CN CN021275726A patent/CN1390954B/zh not_active Expired - Lifetime
- 2002-05-27 EP EP02253705A patent/EP1260927A3/en not_active Withdrawn
-
2003
- 2003-02-26 US US10/372,923 patent/US8103368B2/en not_active Expired - Fee Related
- 2003-12-09 JP JP2003410503A patent/JP3946693B2/ja not_active Expired - Fee Related
-
2004
- 2004-10-29 US US10/976,039 patent/US7945389B2/en not_active Expired - Fee Related
- 2004-10-29 US US10/975,453 patent/US20050086011A1/en not_active Abandoned
-
2006
- 2006-12-27 JP JP2006350910A patent/JP4486080B2/ja not_active Expired - Fee Related
-
2008
- 2008-01-30 KR KR1020080009751A patent/KR100862674B1/ko not_active Expired - Lifetime
-
2009
- 2009-12-25 JP JP2009293630A patent/JP5066173B2/ja not_active Expired - Lifetime
-
2012
- 2012-01-03 US US13/342,448 patent/US8571810B2/en not_active Expired - Fee Related
- 2012-07-09 JP JP2012153577A patent/JP5548736B2/ja not_active Expired - Fee Related
-
2013
- 2013-10-07 US US14/047,349 patent/US20140100790A1/en not_active Abandoned
Also Published As
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Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| MK4A | Expiration of patent term of an invention patent |