CA2387277C - Information processing system using nucleotide sequence-related information - Google Patents

Information processing system using nucleotide sequence-related information Download PDF

Info

Publication number
CA2387277C
CA2387277C CA2387277A CA2387277A CA2387277C CA 2387277 C CA2387277 C CA 2387277C CA 2387277 A CA2387277 A CA 2387277A CA 2387277 A CA2387277 A CA 2387277A CA 2387277 C CA2387277 C CA 2387277C
Authority
CA
Canada
Prior art keywords
information
polymorphism
semantic
positional
pieces
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Expired - Lifetime
Application number
CA2387277A
Other languages
English (en)
French (fr)
Other versions
CA2387277A1 (en
Inventor
Takamasa Kato
Takeo Morimoto
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Hitachi Ltd
Hitachi High Tech Corp
Original Assignee
Hitachi Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Hitachi Ltd filed Critical Hitachi Ltd
Priority to CA2872499A priority Critical patent/CA2872499C/en
Publication of CA2387277A1 publication Critical patent/CA2387277A1/en
Application granted granted Critical
Publication of CA2387277C publication Critical patent/CA2387277C/en
Anticipated expiration legal-status Critical
Expired - Lifetime legal-status Critical Current

Links

Classifications

    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F17/00—Digital computing or data processing equipment or methods, specially adapted for specific functions
    • G06F17/40—Data acquisition and logging
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16H—HEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
    • G16H10/00—ICT specially adapted for the handling or processing of patient-related medical or healthcare data
    • G16H10/40—ICT specially adapted for the handling or processing of patient-related medical or healthcare data for data related to laboratory analysis, e.g. patient specimen analysis
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16H—HEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
    • G16H10/00—ICT specially adapted for the handling or processing of patient-related medical or healthcare data
    • G16H10/60—ICT specially adapted for the handling or processing of patient-related medical or healthcare data for patient-specific data, e.g. for electronic patient records

Landscapes

  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Medical Informatics (AREA)
  • General Health & Medical Sciences (AREA)
  • Theoretical Computer Science (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biophysics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • Analytical Chemistry (AREA)
  • Chemical & Material Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Molecular Biology (AREA)
  • Epidemiology (AREA)
  • Public Health (AREA)
  • Primary Health Care (AREA)
  • General Engineering & Computer Science (AREA)
  • Databases & Information Systems (AREA)
  • Software Systems (AREA)
  • General Physics & Mathematics (AREA)
  • Mathematical Physics (AREA)
  • Data Mining & Analysis (AREA)
  • Computer Hardware Design (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Medical Treatment And Welfare Office Work (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Micro-Organisms Or Cultivation Processes Thereof (AREA)
CA2387277A 2001-05-25 2002-05-23 Information processing system using nucleotide sequence-related information Expired - Lifetime CA2387277C (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
CA2872499A CA2872499C (en) 2001-05-25 2002-05-23 Information processing system using nucleotide sequence related information

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
JP156943/2001 2001-05-25
JP2001156943 2001-05-25

Related Child Applications (1)

Application Number Title Priority Date Filing Date
CA2872499A Division CA2872499C (en) 2001-05-25 2002-05-23 Information processing system using nucleotide sequence related information

Publications (2)

Publication Number Publication Date
CA2387277A1 CA2387277A1 (en) 2002-11-25
CA2387277C true CA2387277C (en) 2015-03-03

Family

ID=19000881

Family Applications (2)

Application Number Title Priority Date Filing Date
CA2387277A Expired - Lifetime CA2387277C (en) 2001-05-25 2002-05-23 Information processing system using nucleotide sequence-related information
CA2872499A Expired - Lifetime CA2872499C (en) 2001-05-25 2002-05-23 Information processing system using nucleotide sequence related information

Family Applications After (1)

Application Number Title Priority Date Filing Date
CA2872499A Expired - Lifetime CA2872499C (en) 2001-05-25 2002-05-23 Information processing system using nucleotide sequence related information

Country Status (7)

Country Link
US (6) US7912650B2 (https=)
EP (1) EP1260927A3 (https=)
JP (5) JP3862608B2 (https=)
KR (2) KR100832077B1 (https=)
CN (4) CN102737167A (https=)
CA (2) CA2387277C (https=)
TW (1) TWI269988B (https=)

Families Citing this family (25)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CA2387277C (en) * 2001-05-25 2015-03-03 Hitachi, Ltd. Information processing system using nucleotide sequence-related information
US8126655B2 (en) 2001-11-22 2012-02-28 Hitachi, Ltd. Information processing system using information on base sequence
JP4266008B2 (ja) * 2002-11-20 2009-05-20 株式会社日立製作所 塩基配列関連情報を用いた情報処理システム
US20060149502A1 (en) * 2003-02-27 2006-07-06 Takamasa Kato Information processing system using base sequence relevant information
US9827314B2 (en) 2003-12-08 2017-11-28 Mars, Incorporated Edible compositions which are adapted for use by a companion animal
US7264874B2 (en) 2004-12-22 2007-09-04 Aps Laboratory Preparation of metal chalcogenide nanoparticles and nanocomposites therefrom
JP5038671B2 (ja) * 2006-09-25 2012-10-03 株式会社東芝 検査項目選定装置、検査項目選定方法、及び検査項目選定プログラム
JP4791408B2 (ja) * 2007-05-01 2011-10-12 株式会社日立製作所 塩基配列関連情報を用いた情報処理システム
WO2010038032A1 (en) * 2008-10-03 2010-04-08 Mars, Incorporated Genetic test for liver copper accumulation in dogs and low copper pet diet
KR102042253B1 (ko) 2010-05-25 2019-11-07 더 리젠츠 오브 더 유니버시티 오브 캘리포니아 Ｂａｍｂａｍ：고처리율 서열분석 데이터의 병렬 비교 분석
US9646134B2 (en) 2010-05-25 2017-05-09 The Regents Of The University Of California Bambam: parallel comparative analysis of high-throughput sequencing data
JP5117550B2 (ja) * 2010-07-26 2013-01-16 株式会社日立製作所 塩基配列関連情報を用いた情報処理システム
US8898149B2 (en) 2011-05-06 2014-11-25 The Translational Genomics Research Institute Biological data structure having multi-lateral, multi-scalar, and multi-dimensional relationships between molecular features and other data
WO2012158621A1 (en) 2011-05-13 2012-11-22 Indiana University Reaserch And Technology Coporation Secure and scalable mapping of human sequencing reads on hybrid clouds
GB201120989D0 (en) 2011-12-06 2012-01-18 Mars Inc Genetic test
KR101419753B1 (ko) * 2012-10-16 2014-07-17 안형준 개인 단일 염기 다형성에 기반한 개인별 부작용 최소화 약물 검색 시스템 및 그 방법
US9784656B2 (en) * 2014-03-10 2017-10-10 Cool Clubs, LLC Methods and apparatus for measuring properties of a cantilevered member
US10395759B2 (en) 2015-05-18 2019-08-27 Regeneron Pharmaceuticals, Inc. Methods and systems for copy number variant detection
FR3045874B1 (fr) * 2015-12-18 2019-06-14 Axlr, Satt Du Languedoc Roussillon Architecture pour l'analyse de donnees genomiques
US12071669B2 (en) 2016-02-12 2024-08-27 Regeneron Pharmaceuticals, Inc. Methods and systems for detection of abnormal karyotypes
IL266197B2 (en) * 2016-10-24 2024-03-01 Geneinfosec Inc Hiding information contained within nucleic acids
JP6776937B2 (ja) * 2017-02-20 2020-10-28 富士通株式会社 情報処理装置、方法及びプログラム
CN107103207B (zh) * 2017-04-05 2020-07-03 浙江大学 基于病例多组学变异特征的精准医学知识搜索系统及实现方法
EP4513497A3 (en) * 2018-02-16 2025-05-28 Illumina, Inc. Systems and methods for correlated error event mitigation for variant calling
WO2022009342A1 (ja) 2020-07-08 2022-01-13 富士通株式会社 情報処理プログラム、情報処理方法および情報処理装置

Family Cites Families (36)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JPH04265569A (ja) * 1991-02-19 1992-09-21 Canon Inc 音声信号記録装置及び再生装置
US5834189A (en) 1994-07-08 1998-11-10 Visible Genetics Inc. Method for evaluation of polymorphic genetic sequences, and the use thereof in identification of HLA types
US5523208A (en) 1994-11-30 1996-06-04 The Board Of Trustees Of The University Of Kentucky Method to discover genetic coding regions for complementary interacting proteins by scanning DNA sequence data banks
US5867402A (en) * 1995-06-23 1999-02-02 The United States Of America As Represented By The Department Of Health And Human Services Computational analysis of nucleic acid information defines binding sites
JP2000508912A (ja) * 1996-04-19 2000-07-18 スペクトラ バイオメディカル，インコーポレイテッド 多型形態と複数の表現型との相関付け
JPH10151125A (ja) 1996-11-21 1998-06-09 Corp Miyuki:Kk Ｄｎａによる人物識別システム
US5970500A (en) 1996-12-12 1999-10-19 Incyte Pharmaceuticals, Inc. Database and system for determining, storing and displaying gene locus information
JPH11353404A (ja) * 1998-06-11 1999-12-24 Hitachi Ltd 電子カルテシステム
JP2000067139A (ja) * 1998-08-25 2000-03-03 Hitachi Ltd 電子カルテシステム
EP1044417B1 (en) * 1998-10-30 2002-12-11 International Business Machines Corporation Methods and apparatus for performing sequence homology detection
AU5638600A (en) * 1999-06-25 2001-01-31 Genaissance Pharmaceuticals, Inc. Methods for obtaining and using haplotype data
US6931396B1 (en) * 1999-06-29 2005-08-16 Gene Logic Inc. Biological data processing
US6424969B1 (en) * 1999-07-20 2002-07-23 Inmentia, Inc. System and method for organizing data
US6470277B1 (en) * 1999-07-30 2002-10-22 Agy Therapeutics, Inc. Techniques for facilitating identification of candidate genes
CA2381226A1 (en) * 1999-08-05 2001-02-15 Takeda Chemical Industries, Ltd. Method of recording gene analysis data
AU6939700A (en) * 1999-08-27 2001-03-26 Pluvita Corporation System and method for genomic and proteomic human disease assessment via expression profile comparison
AU1367201A (en) * 1999-10-01 2001-05-10 Orchid Biosciences, Inc. Method and system for providing genotype clinical information over a computer network
US6287254B1 (en) * 1999-11-02 2001-09-11 W. Jean Dodds Animal health diagnosis
WO2001028415A1 (en) * 1999-10-15 2001-04-26 Dodds W Jean Animal health diagnosis
US6640211B1 (en) 1999-10-22 2003-10-28 First Genetic Trust Inc. Genetic profiling and banking system and method
GB2363874B (en) * 1999-11-06 2004-08-04 Dennis Sunga Fernandez Bioinformatic transaction scheme
GB0004232D0 (en) 2000-02-24 2000-04-12 Zeneca Ltd Diagnostic method
US20030208454A1 (en) 2000-03-16 2003-11-06 Rienhoff Hugh Y. Method and system for populating a database for further medical characterization
US6847995B1 (en) * 2000-03-30 2005-01-25 United Devices, Inc. Security architecture for distributed processing systems and associated method
EP1167971B1 (en) * 2000-04-17 2007-02-07 Nec Corporation Method and system for providing a home health care service
US20020010552A1 (en) * 2000-05-26 2002-01-24 Hugh Rienhoff System for genetically characterizing an individual for evaluation using genetic and phenotypic variation over a wide area network
JP2002024416A (ja) 2000-07-04 2002-01-25 Sony Corp Ｄｎａ情報管理システム及びｄｎａ情報管理方法
JP3440270B2 (ja) 2000-12-18 2003-08-25 エヌシーアンドエス株式会社 生理現象関連遺伝子情報の提供装置、その提供方法及びその提供を行うためのプログラムを格納した記録媒体
US20030211501A1 (en) * 2001-04-18 2003-11-13 Stephens J. Claiborne Method and system for determining haplotypes from a collection of polymorphisms
JP2002318858A (ja) 2001-04-19 2002-10-31 Toshitada Kameda 医療計画作成支援システム及びコンピュータプログラム
CA2387277C (en) * 2001-05-25 2015-03-03 Hitachi, Ltd. Information processing system using nucleotide sequence-related information
WO2003009210A1 (en) * 2001-07-18 2003-01-30 Gene Logic, Inc. Methods of providing customized gene annotation reports
US20030087244A1 (en) * 2001-10-09 2003-05-08 Vitivity, Inc Diagnosis and treatment of vascular disease
US8126655B2 (en) * 2001-11-22 2012-02-28 Hitachi, Ltd. Information processing system using information on base sequence
JP3677258B2 (ja) * 2002-07-15 2005-07-27 株式会社日立製作所 塩基配列関連情報を用いた情報処理システム
WO2004046996A1 (ja) * 2002-11-18 2004-06-03 Hitachi, Ltd. 塩基配列関連情報を用いた情報処理システム

Also Published As

Publication number Publication date
CN102637245A (zh) 2012-08-15
JP2004152316A (ja) 2004-05-27
JP5548736B2 (ja) 2014-07-16
EP1260927A2 (en) 2002-11-27
JP3862608B2 (ja) 2006-12-27
KR20020090339A (ko) 2002-12-02
US8571810B2 (en) 2013-10-29
JP5066173B2 (ja) 2012-11-07
US7912650B2 (en) 2011-03-22
JP2012234558A (ja) 2012-11-29
US7945389B2 (en) 2011-05-17
JP2010123132A (ja) 2010-06-03
JP4486080B2 (ja) 2010-06-23
US20050086011A1 (en) 2005-04-21
CA2872499C (en) 2016-07-05
US20020197635A1 (en) 2002-12-26
JP3946693B2 (ja) 2007-07-18
CA2387277A1 (en) 2002-11-25
US20120101601A1 (en) 2012-04-26
KR20080014139A (ko) 2008-02-13
CN102737167A (zh) 2012-10-17
US20050114040A1 (en) 2005-05-26
EP1260927A3 (en) 2006-06-21
JP2003099440A (ja) 2003-04-04
US8103368B2 (en) 2012-01-24
CN1645401A (zh) 2005-07-27
CA2872499A1 (en) 2002-11-25
US20140100790A1 (en) 2014-04-10
CN1390954B (zh) 2012-06-06
JP2007157168A (ja) 2007-06-21
CN102637245B (zh) 2016-06-29
KR100862674B1 (ko) 2008-10-10
US20030125883A1 (en) 2003-07-03
CN1390954A (zh) 2003-01-15
KR100832077B1 (ko) 2008-05-27
TWI269988B (en) 2007-01-01

Similar Documents

Publication Publication Date Title
CA2387277C (en) Information processing system using nucleotide sequence-related information
JP3888999B2 (ja) 塩基配列関連情報を用いた情報処理システム
US8126655B2 (en) Information processing system using information on base sequence
JP3677275B2 (ja) 塩基配列関連情報を用いた情報処理システム
JP3677258B2 (ja) 塩基配列関連情報を用いた情報処理システム
EP1598765A1 (en) Information processing system using base sequence relevant information
EP1569154A1 (en) Data processing system using base sequence-relating data
JP4791408B2 (ja) 塩基配列関連情報を用いた情報処理システム
JP2010277601A (ja) 塩基配列関連情報を用いた情報処理システム
JP2005004502A (ja) 塩基配列関連情報を用いた情報処理システム

Legal Events

Date Code Title Description
EEER Examination request
MKEX Expiry

Effective date: 20220524