JP5409005B2 - 非ランダムプライマーを用いる核酸増幅 - Google Patents

非ランダムプライマーを用いる核酸増幅 Download PDF

Info

Publication number
JP5409005B2
JP5409005B2 JP2008538067A JP2008538067A JP5409005B2 JP 5409005 B2 JP5409005 B2 JP 5409005B2 JP 2008538067 A JP2008538067 A JP 2008538067A JP 2008538067 A JP2008538067 A JP 2008538067A JP 5409005 B2 JP5409005 B2 JP 5409005B2
Authority
JP
Japan
Prior art keywords
population
nucleic acid
oligonucleotides
target
subpopulation
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Expired - Fee Related
Application number
JP2008538067A
Other languages
English (en)
Japanese (ja)
Other versions
JP2009513142A5 (OSRAM
JP2009513142A (ja
Inventor
キヤスル,ジヨン
レイモンド,クリストフアー・ケイ
アーマー,クリストフアー
Original Assignee
ロゼッタ インファーマティックス エルエルシー
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by ロゼッタ インファーマティックス エルエルシー filed Critical ロゼッタ インファーマティックス エルエルシー
Publication of JP2009513142A publication Critical patent/JP2009513142A/ja
Publication of JP2009513142A5 publication Critical patent/JP2009513142A5/ja
Application granted granted Critical
Publication of JP5409005B2 publication Critical patent/JP5409005B2/ja
Expired - Fee Related legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Images

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/158Expression markers

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Analytical Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
JP2008538067A 2005-10-27 2006-10-27 非ランダムプライマーを用いる核酸増幅 Expired - Fee Related JP5409005B2 (ja)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US73152905P 2005-10-27 2005-10-27
US60/731,529 2005-10-27
US79045806P 2006-04-07 2006-04-07
US60/790,458 2006-04-07
PCT/US2006/042250 WO2007050990A2 (en) 2005-10-27 2006-10-27 Nucleic acid amplification using non-random primers

Publications (3)

Publication Number Publication Date
JP2009513142A JP2009513142A (ja) 2009-04-02
JP2009513142A5 JP2009513142A5 (OSRAM) 2009-12-17
JP5409005B2 true JP5409005B2 (ja) 2014-02-05

Family

ID=37968610

Family Applications (1)

Application Number Title Priority Date Filing Date
JP2008538067A Expired - Fee Related JP5409005B2 (ja) 2005-10-27 2006-10-27 非ランダムプライマーを用いる核酸増幅

Country Status (5)

Country Link
US (2) US20080187969A1 (OSRAM)
EP (2) EP1941058A4 (OSRAM)
JP (1) JP5409005B2 (OSRAM)
CA (1) CA2626977A1 (OSRAM)
WO (1) WO2007050990A2 (OSRAM)

Families Citing this family (13)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP1957645B1 (en) 2005-12-06 2010-11-17 Ambion Inc. Reverse transcription primers and methods of design
MX2009009530A (es) * 2007-03-07 2010-05-19 Nventa Biopharmaceuticals Corp Composiciones de acidos nucleicos cerrados bicatenarios.
JP2011500092A (ja) * 2007-10-26 2011-01-06 ロゼッタ、インファーマティクス、リミテッド、ライアビリティ、カンパニー 非ランダムプライマーを用いたcDNA合成の方法
EP2240606B1 (en) 2008-01-14 2016-10-12 Applied Biosystems, LLC Compositions, methods, and kits for detecting ribonucleic acid
JP2011519579A (ja) * 2008-05-15 2011-07-14 トピジェン ファーマスーティカルズ インク 炎症および新生細胞増殖の治療のためのオリゴヌクレオチド
US20100159533A1 (en) * 2008-11-24 2010-06-24 Helicos Biosciences Corporation Simplified sample preparation for rna analysis
CN102224259B (zh) * 2008-11-24 2014-08-27 塞昆纳姆股份有限公司 核酸定量的产品和方法
EP2475777A4 (en) * 2009-09-11 2013-03-06 Nugen Technologies Inc COMPOSITIONS AND METHODS FOR COMPLETE TRANSCRIPTOMAL ANALYSIS
WO2012064739A2 (en) * 2010-11-08 2012-05-18 The Trustees Of Columbia University In The City Of New York Microbial enrichment primers
WO2013049227A2 (en) 2011-09-26 2013-04-04 Geneart Ag High efficiency, small volume nucleic acid synthesis
WO2014153188A2 (en) 2013-03-14 2014-09-25 Life Technologies Corporation High efficiency, small volume nucleic acid synthesis
CN115927293A (zh) 2014-12-09 2023-04-07 生命技术公司 高效小体积核酸合成
EP3974528A4 (en) * 2019-05-20 2022-11-09 Kyushu University, National University Corporation OLIGONUCLEOTIDE, METHOD AND OMICS ANALYSIS KIT

Family Cites Families (61)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5723597A (en) * 1983-01-10 1998-03-03 Gen-Probe Incorporated Ribosomal nucleic acid probes for detecting organisms or groups of organisms
US6221581B1 (en) * 1984-04-27 2001-04-24 Enzo Diagnostics, Inc. Processes for detecting polynucleotides, determining genetic mutations or defects in genetic material, separating or isolating nucleic acid of interest from samples, and useful compositions of matter and multihybrid complex compositions
US6150517A (en) * 1986-11-24 2000-11-21 Gen-Probe Methods for making oligonucleotide probes for the detection and/or quantitation of non-viral organisms
US5541308A (en) * 1986-11-24 1996-07-30 Gen-Probe Incorporated Nucleic acid probes for detection and/or quantitation of non-viral organisms
US5639604A (en) * 1987-09-21 1997-06-17 Gen-Probe Incorporated Homogeneous protection assay
US5084565A (en) * 1988-08-18 1992-01-28 Gene-Trak Systems Probes for the specific detection of escherichia coli and shigella
US5512439A (en) * 1988-11-21 1996-04-30 Dynal As Oligonucleotide-linked magnetic particles and uses thereof
US5708154A (en) * 1989-02-24 1998-01-13 City Of Hope RNA-DNA hybrid molecules of nucleic acid
AU5347690A (en) * 1989-03-10 1990-10-09 Gene-Trak Systems Preventing interference with affinity capture schemes
EP0431149B1 (en) * 1989-05-31 1995-09-06 Amoco Corporation Universal eubacteria nucleic acid probes and methods
US5744101A (en) * 1989-06-07 1998-04-28 Affymax Technologies N.V. Photolabile nucleoside protecting groups
US5545522A (en) * 1989-09-22 1996-08-13 Van Gelder; Russell N. Process for amplifying a target polynucleotide sequence using a single primer-promoter complex
CA2025181A1 (en) * 1989-10-12 1991-04-13 William G. Weisburg Nucleic acid probes and methods for detecting fungi
DE69333650T2 (de) * 1992-02-19 2006-01-12 The Public Health Research Institute Of The City Of New York, Inc. Neue anordnungn von oligonukleotiden und ihr nutzen zum sortieren, isolieren, sequenzieren und manipulieren von nukleinsäuren
CA2135073C (en) * 1992-05-06 2002-11-19 Daniel L. Kacian Nucleic acid sequence amplification method, composition and kit
GB9211979D0 (en) * 1992-06-05 1992-07-15 Buchard Ole Uses of nucleic acid analogues
US5633134A (en) * 1992-10-06 1997-05-27 Ig Laboratories, Inc. Method for simultaneously detecting multiple mutations in a DNA sample
US5500356A (en) * 1993-08-10 1996-03-19 Life Technologies, Inc. Method of nucleic acid sequence selection
US6309823B1 (en) * 1993-10-26 2001-10-30 Affymetrix, Inc. Arrays of nucleic acid probes for analyzing biotransformation genes and methods of using the same
US5639428A (en) * 1994-07-19 1997-06-17 Becton Dickinson And Company Method and apparatus for fully automated nucleic acid amplification, nucleic acid assay and immunoassay
FR2737502B1 (fr) * 1995-07-31 1997-10-24 Genset Sa Procede de detection d'acides nucleiques utilisant des sondes nucleotidiques permettant a la fois une capture specifique et une detection
US6013440A (en) * 1996-03-11 2000-01-11 Affymetrix, Inc. Nucleic acid affinity columns
EP0839214A1 (en) * 1996-05-14 1998-05-06 Roche Diagnostics GmbH Method for identifying and/or quantifying expression of nucleic acid molecules in a sample
US6203978B1 (en) * 1996-05-31 2001-03-20 Du Vergier Ltd. Capture of single stranded nucleic acids
JP2001500741A (ja) * 1996-09-19 2001-01-23 アフィメトリックス,インコーポレイテッド 分子配列サインの同定およびそれに関する方法
AU6229098A (en) * 1997-02-21 1998-09-09 Takara Shuzo Co., Ltd. Cancer-associated genes
EP0975807B1 (en) * 1997-05-02 2006-09-27 Gen-Probe Incorporated Two-step hybridization and capture of a polynucleotide
EP1007739A2 (en) * 1997-09-05 2000-06-14 Sidney Kimmel Cancer Center Selection of pcr primer pairs to amplify a group of nucleotide sequences
US5932451A (en) * 1997-11-19 1999-08-03 Incyte Pharmaceuticals, Inc. Method for unbiased mRNA amplification
US6270973B1 (en) * 1998-03-13 2001-08-07 Promega Corporation Multiplex method for nucleic acid detection
US6197510B1 (en) * 1998-10-01 2001-03-06 Bio-Id Diagnostic Inc. Multi-loci genomic analysis
US6316193B1 (en) * 1998-10-06 2001-11-13 Origene Technologies, Inc. Rapid-screen cDNA library panels
US6951722B2 (en) * 1999-03-19 2005-10-04 Takara Bio Inc. Method for amplifying nucleic acid sequence
US6582906B1 (en) * 1999-04-05 2003-06-24 Affymetrix, Inc. Proportional amplification of nucleic acids
US6132997A (en) * 1999-05-28 2000-10-17 Agilent Technologies Method for linear mRNA amplification
US6465183B2 (en) * 1999-07-01 2002-10-15 Agilent Technologies, Inc. Multidentate arrays
US6495320B1 (en) * 1999-07-21 2002-12-17 Affymetrix, Inc. Even length proportional amplification of nucleic acids
JP4796252B2 (ja) * 1999-07-23 2011-10-19 ジェン−プローブ・インコーポレーテッド ポリヌクレオチド増幅方法
US20020072061A1 (en) * 1999-07-30 2002-06-13 Alex Chenchik Methods and compositions for use in synthesizing nucleic acids
AU2001232485A1 (en) * 2000-01-13 2001-07-24 Amsterdam Support Diagnostics B.V. A universal nucleic acid amplification system for nucleic acids in a sample
US20030022318A1 (en) * 2000-01-25 2003-01-30 Epiclone, Inc. Method for thermocycling amplification of nucleic acid sequences and the generation of related peptides thereof
US6235483B1 (en) * 2000-01-31 2001-05-22 Agilent Technologies, Inc. Methods and kits for indirect labeling of nucleic acids
US20010026919A1 (en) * 2000-02-08 2001-10-04 Alex Chenchik Nucleic acid assays employing universal arrays
US7601497B2 (en) * 2000-06-15 2009-10-13 Qiagen Gaithersburg, Inc. Detection of nucleic acids by target-specific hybrid capture method
US6465219B1 (en) * 2000-08-07 2002-10-15 Genemed Biotechnologies, Inc. Polynucleotide pools enriched in either high-abundance or low-abundance sequences
WO2002044399A2 (en) * 2000-11-28 2002-06-06 Rosetta Inpharmatics, Inc. In vitro transcription method for rna amplification
US6391592B1 (en) * 2000-12-14 2002-05-21 Affymetrix, Inc. Blocker-aided target amplification of nucleic acids
US6448387B1 (en) * 2000-12-18 2002-09-10 Monsanto Technology, Llc Polymeric arrays adapted for high expressing polynucleotides
US20030104432A1 (en) * 2001-07-27 2003-06-05 The Regents Of The University Of California Methods of amplifying sense strand RNA
WO2003050304A1 (en) * 2001-12-08 2003-06-19 Seegene, Inc Annealing control primer system for regulating primer annealing specificity and its applications
WO2003064621A2 (en) * 2002-02-01 2003-08-07 Ambion, Inc. HIGH POTENCY siRNAS FOR REDUCING THE EXPRESSION OF TARGET GENES
US20030211483A1 (en) * 2002-05-09 2003-11-13 Schroeder Benjamin G. Methods for the enrichment of low-abundance polynucleotides
GB2406169B (en) * 2002-06-12 2006-11-01 Ambion Inc Methods and compositions relating to labeled rna molecules that reduce gene expression
US20040248094A1 (en) * 2002-06-12 2004-12-09 Ford Lance P. Methods and compositions relating to labeled RNA molecules that reduce gene expression
US20040029275A1 (en) * 2002-08-10 2004-02-12 David Brown Methods and compositions for reducing target gene expression using cocktails of siRNAs or constructs expressing siRNAs
US20050003369A1 (en) * 2002-10-10 2005-01-06 Affymetrix, Inc. Method for depleting specific nucleic acids from a mixture
AU2004259851A1 (en) * 2003-07-24 2005-02-03 Qiagen Gmbh Method for the reverse transcription and/or amplification of nucleic acids
US20050059024A1 (en) * 2003-07-25 2005-03-17 Ambion, Inc. Methods and compositions for isolating small RNA molecules
US7265448B2 (en) * 2004-01-26 2007-09-04 Marvell World Trade Ltd. Interconnect structure for power transistors
US20060257902A1 (en) * 2005-03-25 2006-11-16 Ambion, Inc. Methods and compositions for depleting abundant RNA transcripts
US20060255053A1 (en) * 2005-05-16 2006-11-16 Empire Industrial Corp. Sealable container

Also Published As

Publication number Publication date
JP2009513142A (ja) 2009-04-02
WO2007050990A2 (en) 2007-05-03
EP1941058A2 (en) 2008-07-09
EP1941058A4 (en) 2010-01-20
WO2007050990A3 (en) 2007-12-13
EP2479291A1 (en) 2012-07-25
US20080187969A1 (en) 2008-08-07
US20110294701A1 (en) 2011-12-01
CA2626977A1 (en) 2007-05-03

Similar Documents

Publication Publication Date Title
US20110294701A1 (en) Nucleic acid amplification using non-random primers
JP2011500092A (ja) 非ランダムプライマーを用いたcDNA合成の方法
EP2914743B1 (en) Small rna capture, detection and quantification
EP3268491B1 (en) Methods, compositions and kits for small rna capture, detection and quantification
KR101032750B1 (ko) 이중 특이성 올리고뉴클레오타이드를 사용한 방법 및 이중 특이성 올리고뉴클레오타이드
CA2750029C (en) Method for quantification of small rna species
US20050123987A1 (en) Method for depleting specific nucleic acids from a mixture
JP2022516446A (ja) 相補的dnaを調製するための方法およびキット
US20220017954A1 (en) Methods for Preparing CDNA Samples for RNA Sequencing, and CDNA Samples and Uses Thereof
JP2024515076A (ja) 一本鎖dnaの増幅
CN113490751A (zh) 核酸检测和引物设计方法
WO2003079667A1 (en) Improved nucleic acid amplification
CN114341353B (zh) 扩增mRNA和制备全长mRNA文库的方法
CN117512078A (zh) 单引物至双引物扩增子转换
CA3223987A1 (en) Methods, compositions, and kits for preparing sequencing library
JP2023542408A (ja) 核酸を検出する組み合わせ、方法及びキット
US20060234277A1 (en) Method for selectively blocking hemoglobin RNA amplification
WO2000018966A2 (en) A new strategy for genome-wide gene analysis: integrated procedures for gene identification
WO2004013351A2 (en) Target dna
JP2005532074A (ja) 核酸増幅法

Legal Events

Date Code Title Description
A521 Request for written amendment filed

Free format text: JAPANESE INTERMEDIATE CODE: A523

Effective date: 20091026

A621 Written request for application examination

Free format text: JAPANESE INTERMEDIATE CODE: A621

Effective date: 20091026

A131 Notification of reasons for refusal

Free format text: JAPANESE INTERMEDIATE CODE: A131

Effective date: 20120417

A601 Written request for extension of time

Free format text: JAPANESE INTERMEDIATE CODE: A601

Effective date: 20120711

A602 Written permission of extension of time

Free format text: JAPANESE INTERMEDIATE CODE: A602

Effective date: 20120719

A521 Request for written amendment filed

Free format text: JAPANESE INTERMEDIATE CODE: A523

Effective date: 20121017

A131 Notification of reasons for refusal

Free format text: JAPANESE INTERMEDIATE CODE: A131

Effective date: 20121113

A601 Written request for extension of time

Free format text: JAPANESE INTERMEDIATE CODE: A601

Effective date: 20130208

A602 Written permission of extension of time

Free format text: JAPANESE INTERMEDIATE CODE: A602

Effective date: 20130218

RD04 Notification of resignation of power of attorney

Free format text: JAPANESE INTERMEDIATE CODE: A7424

Effective date: 20130313

A01 Written decision to grant a patent or to grant a registration (utility model)

Free format text: JAPANESE INTERMEDIATE CODE: A01

Effective date: 20131022

A61 First payment of annual fees (during grant procedure)

Free format text: JAPANESE INTERMEDIATE CODE: A61

Effective date: 20131105

R250 Receipt of annual fees

Free format text: JAPANESE INTERMEDIATE CODE: R250

LAPS Cancellation because of no payment of annual fees