JP2018508198A5 - - Google Patents

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JP2018508198A5
JP2018508198A5 JP2017539228A JP2017539228A JP2018508198A5 JP 2018508198 A5 JP2018508198 A5 JP 2018508198A5 JP 2017539228 A JP2017539228 A JP 2017539228A JP 2017539228 A JP2017539228 A JP 2017539228A JP 2018508198 A5 JP2018508198 A5 JP 2018508198A5
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Japan
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nucleic acid
barcode sequence
separate entities
multiple copies
acid barcode
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JP2017539228A
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JP2018508198A (ja
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Priority claimed from PCT/US2016/016444 external-priority patent/WO2016126871A2/en
Publication of JP2018508198A publication Critical patent/JP2018508198A/ja
Publication of JP2018508198A5 publication Critical patent/JP2018508198A5/ja
Priority to JP2022023107A priority Critical patent/JP2022088360A/ja
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Claims (1)

  1. 核酸バーコード配列の複数のコピーを、別個の実体中に導入する方法であって、
    別個の実体中に複数の核酸標的分子をカプセル封入するステップと、
    別個の実体中に、核酸バーコード配列の複数のコピーを含む細胞を導入するステップと、
    細胞を溶解して、別個の実体中に核酸バーコード配列の複数のコピーを放出するステップと、
    別個の実体を、複数の核酸標的分子またはその増幅産物中への核酸バーコード配列の酵素的組込みに十分な条件に供するステップと
    を含む、方法。
JP2017539228A 2015-02-04 2016-02-03 別個の実体におけるバーコード付加による核酸のシーケンシング Pending JP2018508198A (ja)

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JP2022023107A JP2022088360A (ja) 2015-02-04 2022-02-17 別個の実体におけるバーコード付加による核酸のシーケンシング

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US201562112075P 2015-02-04 2015-02-04
US62/112,075 2015-02-04
PCT/US2016/016444 WO2016126871A2 (en) 2015-02-04 2016-02-03 Sequencing of nucleic acids via barcoding in discrete entities

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JP2018508198A JP2018508198A (ja) 2018-03-29
JP2018508198A5 true JP2018508198A5 (ja) 2019-03-14

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JP2017539228A Pending JP2018508198A (ja) 2015-02-04 2016-02-03 別個の実体におけるバーコード付加による核酸のシーケンシング
JP2022023107A Pending JP2022088360A (ja) 2015-02-04 2022-02-17 別個の実体におけるバーコード付加による核酸のシーケンシング

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US (3) US11111519B2 (ja)
EP (2) EP4112744A1 (ja)
JP (2) JP2018508198A (ja)
CN (2) CN107530654A (ja)
AU (2) AU2016215304B2 (ja)
CA (1) CA2974306A1 (ja)
HK (1) HK1248169A1 (ja)
WO (1) WO2016126871A2 (ja)

Families Citing this family (169)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US8835358B2 (en) 2009-12-15 2014-09-16 Cellular Research, Inc. Digital counting of individual molecules by stochastic attachment of diverse labels
ES2904816T3 (es) 2012-02-27 2022-04-06 Becton Dickinson Co Composiciones para recuento molecular
WO2013177560A1 (en) 2012-05-25 2013-11-28 The Regents Of The University Of California Microfluidic systems for particle trapping and separation
CA2881783A1 (en) 2012-08-13 2014-02-20 The Regents Of The University Of California Methods and systems for detecting biological components
US9567631B2 (en) 2012-12-14 2017-02-14 10X Genomics, Inc. Methods and systems for processing polynucleotides
US10221442B2 (en) 2012-08-14 2019-03-05 10X Genomics, Inc. Compositions and methods for sample processing
US10584381B2 (en) 2012-08-14 2020-03-10 10X Genomics, Inc. Methods and systems for processing polynucleotides
US11591637B2 (en) 2012-08-14 2023-02-28 10X Genomics, Inc. Compositions and methods for sample processing
US10273541B2 (en) 2012-08-14 2019-04-30 10X Genomics, Inc. Methods and systems for processing polynucleotides
US9951386B2 (en) 2014-06-26 2018-04-24 10X Genomics, Inc. Methods and systems for processing polynucleotides
US10323279B2 (en) 2012-08-14 2019-06-18 10X Genomics, Inc. Methods and systems for processing polynucleotides
CA3216609C (en) 2012-08-14 2024-05-14 10X Genomics, Inc. Microcapsule compositions and methods
US10752949B2 (en) 2012-08-14 2020-08-25 10X Genomics, Inc. Methods and systems for processing polynucleotides
US9701998B2 (en) 2012-12-14 2017-07-11 10X Genomics, Inc. Methods and systems for processing polynucleotides
US10533221B2 (en) 2012-12-14 2020-01-14 10X Genomics, Inc. Methods and systems for processing polynucleotides
CA2900543C (en) 2013-02-08 2023-01-31 10X Genomics, Inc. Partitioning and processing of analytes and other species
EP3597772A1 (en) 2013-04-17 2020-01-22 Agency For Science, Technology And Research Method for generating extended sequence reads
US9879313B2 (en) 2013-06-25 2018-01-30 Prognosys Biosciences, Inc. Methods and systems for determining spatial patterns of biological targets in a sample
GB2546833B (en) 2013-08-28 2018-04-18 Cellular Res Inc Microwell for single cell analysis comprising single cell and single bead oligonucleotide capture labels
US9824068B2 (en) 2013-12-16 2017-11-21 10X Genomics, Inc. Methods and apparatus for sorting data
WO2015157567A1 (en) 2014-04-10 2015-10-15 10X Genomics, Inc. Fluidic devices, systems, and methods for encapsulating and partitioning reagents, and applications of same
EP4053292A1 (en) 2014-06-26 2022-09-07 10X Genomics, Inc. Methods of analyzing nucleic acids from individual cells or cell populations
WO2015200717A2 (en) 2014-06-27 2015-12-30 The Regents Of The University Of California Pcr-activated sorting (pas)
GB201414177D0 (en) * 2014-08-11 2014-09-24 Sphere Fluidics Ltd Droplet Sorting
WO2016065056A1 (en) 2014-10-22 2016-04-28 The Regents Of The University Of California High definition microdroplet printer
CN114807307A (zh) 2014-10-29 2022-07-29 10X 基因组学有限公司 用于靶核酸测序的方法和组合物
US9975122B2 (en) 2014-11-05 2018-05-22 10X Genomics, Inc. Instrument systems for integrated sample processing
US10900065B2 (en) 2014-11-14 2021-01-26 University Of Washington Methods and kits for labeling cellular molecules
BR112017014902A2 (pt) 2015-01-12 2018-03-13 10X Genomics Inc processos e sistemas para a preparação de bibliotecas de sequenciamento de ácido nucleico e bibliotecas preparadas usando os mesmos
US11111519B2 (en) 2015-02-04 2021-09-07 The Regents Of The University Of California Sequencing of nucleic acids via barcoding in discrete entities
US11274343B2 (en) 2015-02-24 2022-03-15 10X Genomics, Inc. Methods and compositions for targeted nucleic acid sequence coverage
WO2016137973A1 (en) 2015-02-24 2016-09-01 10X Genomics Inc Partition processing methods and systems
EP4119677B1 (en) 2015-04-10 2023-06-28 Spatial Transcriptomics AB Spatially distinguished, multiplex nucleic acid analysis of biological specimens
US10982258B2 (en) * 2015-04-27 2021-04-20 Abvitro Llc Methods of sequencing, determining, pairing, and validating therapeutic agents and disease specific antigens
US20180237836A1 (en) * 2015-08-17 2018-08-23 The Regents Of The University Of California Microdroplet-Based Multiple Displacement Amplification (MDA) Methods and Related Compositions
US9862941B2 (en) 2015-10-14 2018-01-09 Pioneer Hi-Bred International, Inc. Single cell microfluidic device
WO2017083375A1 (en) * 2015-11-10 2017-05-18 Illumina, Inc. Inertial droplet generation and particle encapsulation
US11371094B2 (en) 2015-11-19 2022-06-28 10X Genomics, Inc. Systems and methods for nucleic acid processing using degenerate nucleotides
CN115369161A (zh) 2015-12-04 2022-11-22 10X 基因组学有限公司 用于核酸分析的方法和组合物
EP3414341A4 (en) 2016-02-11 2019-10-09 10X Genomics, Inc. SYSTEMS, METHODS, AND MEDIA FOR ASSEMBLING NOVO OF GENOME SEQUENCE DATA OVERALL
WO2017181161A1 (en) 2016-04-15 2017-10-19 Predicine, Inc. Systems and methods for detecting genetic alterations
WO2018057820A1 (en) 2016-09-21 2018-03-29 Predicine, Inc. Systems and methods for combined detection of genetic alterations
WO2018183796A1 (en) * 2017-03-31 2018-10-04 Predicine, Inc. Systems and methods for predicting and monitoring cancer therapy
WO2017197338A1 (en) 2016-05-13 2017-11-16 10X Genomics, Inc. Microfluidic systems and methods of use
US11513076B2 (en) 2016-06-15 2022-11-29 Ludwig-Maximilians-Universität München Single molecule detection or quantification using DNA nanotechnology
US10830545B2 (en) 2016-07-12 2020-11-10 Fractal Heatsink Technologies, LLC System and method for maintaining efficiency of a heat sink
JP6853523B2 (ja) * 2016-07-27 2021-03-31 国立大学法人京都大学 ヘリカーゼを用いたpcr
WO2018031691A1 (en) 2016-08-10 2018-02-15 The Regents Of The University Of California Combined multiple-displacement amplification and pcr in an emulsion microdroplet
CA3032528A1 (en) 2016-09-15 2018-03-22 Augmenta Bioworks, Inc. Immune repertoire sequence amplification methods and applications
AU2017331459B2 (en) 2016-09-26 2023-04-13 Becton, Dickinson And Company Measurement of protein expression using reagents with barcoded oligonucleotide sequences
WO2018067792A1 (en) * 2016-10-07 2018-04-12 President And Fellows Of Harvard College Sequencing of bacteria or other species
EP3525933A1 (en) * 2016-10-11 2019-08-21 The Regents of the University of California Systems and methods to encapsulate and preserve organic matter for analysis
EP3985122A1 (en) * 2016-11-10 2022-04-20 Takara Bio USA, Inc. Methods of producing amplified double stranded deoxyribonucleic acids and compositions and kits for use therein
US20190316180A1 (en) * 2016-11-23 2019-10-17 Universite De Strasbourg Tandem barcoding of target molecules for their absolute quantification at single-entity resolution
CN110462053A (zh) * 2016-12-21 2019-11-15 加利福尼亚大学董事会 使用基于水凝胶的液滴进行单细胞基因组测序
US10011872B1 (en) * 2016-12-22 2018-07-03 10X Genomics, Inc. Methods and systems for processing polynucleotides
US10550429B2 (en) 2016-12-22 2020-02-04 10X Genomics, Inc. Methods and systems for processing polynucleotides
US10815525B2 (en) 2016-12-22 2020-10-27 10X Genomics, Inc. Methods and systems for processing polynucleotides
EP4029939B1 (en) 2017-01-30 2023-06-28 10X Genomics, Inc. Methods and systems for droplet-based single cell barcoding
US10995333B2 (en) 2017-02-06 2021-05-04 10X Genomics, Inc. Systems and methods for nucleic acid preparation
CN107083423B (zh) * 2017-03-27 2022-01-28 北京极客基因科技有限公司 一种药物靶点预测和药物全方面评价方法
WO2018191701A1 (en) * 2017-04-14 2018-10-18 The Broad Institute, Inc. High-throughput screens for exploring biological functions of microscale biological systems
EP4215616A1 (en) 2017-05-18 2023-07-26 10X Genomics, Inc. Methods and systems for sorting droplets and beads
US10544413B2 (en) 2017-05-18 2020-01-28 10X Genomics, Inc. Methods and systems for sorting droplets and beads
SG11201901822QA (en) 2017-05-26 2019-03-28 10X Genomics Inc Single cell analysis of transposase accessible chromatin
US20180340169A1 (en) 2017-05-26 2018-11-29 10X Genomics, Inc. Single cell analysis of transposase accessible chromatin
AU2018273999A1 (en) * 2017-05-26 2019-12-05 Abvitro Llc High-throughput polynucleotide library sequencing and transcriptome analysis
WO2018227210A1 (en) 2017-06-09 2018-12-13 The Regents Of The University Of California High-efficiency encapsulation in droplets based on hydrodynamic vortices control
US11517901B2 (en) 2017-06-09 2022-12-06 The Regents Of The University Of California High-efficiency particle encapsulation in droplets with particle spacing and downstream droplet sorting
WO2018236918A1 (en) 2017-06-20 2018-12-27 Bio-Rad Laboratories, Inc. MDA USING A BALL OLIGONUCLEOTIDE
TWI637834B (zh) * 2017-07-11 2018-10-11 台灣奈米碳素股份有限公司 微流道裝置的製造方法及其結構
US11031312B2 (en) 2017-07-17 2021-06-08 Fractal Heatsink Technologies, LLC Multi-fractal heatsink system and method
CN111511912A (zh) * 2017-08-10 2020-08-07 梅塔生物科技公司 标记来自单个细胞的核酸分子以进行定相测序
US10610865B2 (en) 2017-08-22 2020-04-07 10X Genomics, Inc. Droplet forming devices and system with differential surface properties
US11680283B2 (en) 2017-09-22 2023-06-20 University Of Washington In situ combinatorial labeling of cellular molecules
US11639933B2 (en) * 2017-09-27 2023-05-02 Bio-Rad Laboratories, Inc. Digital affinity linkage assay
US20200261879A1 (en) 2017-09-29 2020-08-20 The Regents Of The University Of California Method of generating monodisperse emulsions
US10837047B2 (en) 2017-10-04 2020-11-17 10X Genomics, Inc. Compositions, methods, and systems for bead formation using improved polymers
WO2019075409A1 (en) 2017-10-12 2019-04-18 The Regents Of The University Of California ISOLATION AND IDENTIFICATION WITHOUT MICROFLUIDIC LABEL OF CELLS USING FLUORESCENCE LIFE IMAGING (FLIM)
US10501739B2 (en) 2017-10-18 2019-12-10 Mission Bio, Inc. Method, systems and apparatus for single cell analysis
WO2019079640A1 (en) * 2017-10-18 2019-04-25 Mission Bio, Inc. METHOD, SYSTEMS, AND DEVICE FOR HIGH-EFFICIENCY UNICELLULAR DNA SEQUENCING OF DROPLET MICROFLUIDS
WO2019079787A1 (en) 2017-10-20 2019-04-25 The Regents Of The University Of California MICROFLUIDIC SYSTEMS AND METHODS FOR CELL TRANSFECTION VIA LIPOFLEX
US11499127B2 (en) 2017-10-20 2022-11-15 The Regents Of The University Of California Multi-layered microfluidic systems for in vitro large-scale perfused capillary networks
WO2019083852A1 (en) 2017-10-26 2019-05-02 10X Genomics, Inc. MICROFLUIDIC CHANNEL NETWORKS FOR PARTITIONING
WO2019084043A1 (en) 2017-10-26 2019-05-02 10X Genomics, Inc. METHODS AND SYSTEMS FOR NUCLEIC ACID PREPARATION AND CHROMATIN ANALYSIS
EP3700672B1 (en) 2017-10-27 2022-12-28 10X Genomics, Inc. Methods for sample preparation and analysis
CN111051523B (zh) 2017-11-15 2024-03-19 10X基因组学有限公司 功能化凝胶珠
US10829815B2 (en) 2017-11-17 2020-11-10 10X Genomics, Inc. Methods and systems for associating physical and genetic properties of biological particles
WO2019104337A1 (en) 2017-11-27 2019-05-31 The Trustees Of Columbia University In The City Of New York Rna printing and sequencing devices, methods, and systems
WO2019108851A1 (en) 2017-11-30 2019-06-06 10X Genomics, Inc. Systems and methods for nucleic acid preparation and analysis
WO2019113235A1 (en) * 2017-12-06 2019-06-13 10X Genomics, Inc. Methods and systems for processing nucleic acid molecules
CN111699388A (zh) * 2017-12-12 2020-09-22 10X基因组学有限公司 用于单细胞处理的系统和方法
CN111556900A (zh) * 2017-12-22 2020-08-18 赛默飞世尔科技波罗的海封闭股份公司 包括胺的聚合酶链反应组合物
EP3752832A1 (en) 2018-02-12 2020-12-23 10X Genomics, Inc. Methods characterizing multiple analytes from individual cells or cell populations
US11639928B2 (en) 2018-02-22 2023-05-02 10X Genomics, Inc. Methods and systems for characterizing analytes from individual cells or cell populations
WO2019169028A1 (en) * 2018-02-28 2019-09-06 10X Genomics, Inc. Transcriptome sequencing through random ligation
WO2019173460A1 (en) * 2018-03-07 2019-09-12 Wisconsin Alumni Research Foundation High throughput nucleic acid profiling of single cells
SG11202009889VA (en) 2018-04-06 2020-11-27 10X Genomics Inc Systems and methods for quality control in single cell processing
WO2019224219A1 (en) * 2018-05-22 2019-11-28 Universite De Strasbourg Absolute quantification of target molecules at single-entity resolution using tandem barcoding
US11932899B2 (en) 2018-06-07 2024-03-19 10X Genomics, Inc. Methods and systems for characterizing nucleic acid molecules
US11703427B2 (en) 2018-06-25 2023-07-18 10X Genomics, Inc. Methods and systems for cell and bead processing
US20210261953A1 (en) * 2018-07-03 2021-08-26 Chan Zuckerberg Biohub, Inc. Method to perform high-throughput single cell genomic and phenotypic analyses
WO2020010258A1 (en) * 2018-07-05 2020-01-09 Accuragen Holdings Limited Compositions and methods for digital polymerase chain reaction
US20200032335A1 (en) 2018-07-27 2020-01-30 10X Genomics, Inc. Systems and methods for metabolome analysis
US20200048626A1 (en) * 2018-08-07 2020-02-13 Augmenta Bioworks, Inc. Methods for Making Gel Beads and Core and Shell Beads with a Cell
US20210346888A1 (en) 2018-08-17 2021-11-11 The Regents Of The University Of California Monodispersed Particle-Triggered Droplet Formation from Stable Jets
US20200056223A1 (en) * 2018-08-20 2020-02-20 10X Genomics, Inc. Compositions and methods for cellular processing
JP2022511398A (ja) 2018-10-01 2022-01-31 ベクトン・ディキンソン・アンド・カンパニー 5’転写物配列の決定
WO2020077017A2 (en) 2018-10-10 2020-04-16 Augmenta Bioworks, Inc. Methods for isolating immune binding proteins
US11608524B1 (en) * 2018-10-25 2023-03-21 Wisconsin Alumni Research Foundation Methods of analyzing cells
US11459607B1 (en) 2018-12-10 2022-10-04 10X Genomics, Inc. Systems and methods for processing-nucleic acid molecules from a single cell using sequential co-partitioning and composite barcodes
EP3894593A2 (en) 2018-12-13 2021-10-20 DNA Script Direct oligonucleotide synthesis on cells and biomolecules
CN111378557B (zh) 2018-12-26 2023-06-06 财团法人工业技术研究院 用于产生液珠的管状结构及液珠产生方法
US11845983B1 (en) 2019-01-09 2023-12-19 10X Genomics, Inc. Methods and systems for multiplexing of droplet based assays
CN113490751A (zh) * 2019-01-22 2021-10-08 使命生物公司 核酸检测和引物设计方法
US11467153B2 (en) 2019-02-12 2022-10-11 10X Genomics, Inc. Methods for processing nucleic acid molecules
SG11202108788TA (en) 2019-02-12 2021-09-29 10X Genomics Inc Methods for processing nucleic acid molecules
US11851683B1 (en) 2019-02-12 2023-12-26 10X Genomics, Inc. Methods and systems for selective analysis of cellular samples
US11655499B1 (en) 2019-02-25 2023-05-23 10X Genomics, Inc. Detection of sequence elements in nucleic acid molecules
SG11202111242PA (en) * 2019-03-11 2021-11-29 10X Genomics Inc Systems and methods for processing optically tagged beads
WO2020183591A1 (en) * 2019-03-11 2020-09-17 Enplas Corporation Fluid handling method, and fluid handling device and fluid handling system used for the method
EP3947724A4 (en) * 2019-04-02 2023-06-14 Mission Bio, Inc. METHODS AND SYSTEMS FOR CHARACTERIZING TUMORS AND IDENTIFYING TUMOR HETEROGENY
EP3947674A4 (en) * 2019-04-02 2023-06-07 Mission Bio, Inc. METHODS, SYSTEMS AND APPARATUS FOR NUCLEIC ACID DETECTION
EP3973074A4 (en) 2019-05-22 2023-09-06 Mission Bio, Inc. METHOD AND DEVICE FOR SIMULTANEOUS TARGETED SEQUENCING OF DNA, RNA AND PROTEIN
WO2020252387A2 (en) * 2019-06-12 2020-12-17 Ultima Genomics, Inc. Methods for accurate base calling using molecular barcodes
US20230212556A1 (en) * 2019-06-27 2023-07-06 Cell Microsystems, Inc. Systems and methods for associating single cell imaging with rna transcriptomics
US11667954B2 (en) 2019-07-01 2023-06-06 Mission Bio, Inc. Method and apparatus to normalize quantitative readouts in single-cell experiments
CN113891961A (zh) * 2019-07-12 2022-01-04 深圳华大生命科学研究院 一种全基因组全流程微流控自动化建库方法和装置
US11939622B2 (en) 2019-07-22 2024-03-26 Becton, Dickinson And Company Single cell chromatin immunoprecipitation sequencing assay
WO2021022085A2 (en) * 2019-07-31 2021-02-04 Bioskryb, Inc. Single cell analysis
US20220282326A1 (en) * 2019-08-05 2022-09-08 Mission Bio, Inc. Method and Apparatus for Single-Cell Analysis for Determining a Cell Trajectory
EP4025909A4 (en) * 2019-09-04 2023-10-18 Vanderbilt University METHODS OF IDENTIFYING ANTIBODY ANTIGEN BINDING SPECIFICITY
WO2021067286A1 (en) * 2019-09-30 2021-04-08 Shield Diagnostics Corp. Devices for determining a target nucleic acid profile and methods of use thereof
JP2022550596A (ja) * 2019-10-05 2022-12-02 ミッション バイオ インコーポレイテッド シングルセルで同時に検出されるコピー数変動及び単一ヌクレオチド変動のための方法、システム、及び装置
US11919000B2 (en) 2019-10-10 2024-03-05 1859, Inc. Methods and systems for microfluidic screening
US20220381781A1 (en) * 2019-10-16 2022-12-01 Georgia Tech Research Corporation Methods for ultrasensitive detection of protein and cellular biomarkers
CN110777048A (zh) * 2019-11-01 2020-02-11 上海市第六人民医院 一种高通量单外泌体分离装置
CN114729350A (zh) 2019-11-08 2022-07-08 贝克顿迪金森公司 使用随机引发获得用于免疫组库测序的全长v(d)j信息
US20210205811A1 (en) * 2019-11-19 2021-07-08 10X Genomics, Inc. Methods and devices for sorting droplets and particles
WO2021128035A1 (zh) * 2019-12-25 2021-07-01 苏州绘真生物科技有限公司 高通量单细胞转录组测序方法及试剂盒
CN115244184A (zh) 2020-01-13 2022-10-25 贝克顿迪金森公司 用于定量蛋白和rna的方法和组合物
US11512337B2 (en) 2020-01-13 2022-11-29 Fluent Biosciences Inc. Emulsion based drug screening
WO2021146184A1 (en) 2020-01-13 2021-07-22 Fluent Biosciences Inc. Single cell sequencing
WO2021146166A1 (en) 2020-01-13 2021-07-22 Fluent Biosciences Inc. Methods and systems for single cell gene profiling
US11732299B2 (en) 2020-01-21 2023-08-22 10X Genomics, Inc. Spatial assays with perturbed cells
EP4095256A4 (en) * 2020-01-23 2023-03-15 DGI Tech (Qing Dao) Co., Limited DROPLET MICROFLUIDIC-BASED SINGLE CELL SEQUENCING AND APPLICATIONS
US11835462B2 (en) 2020-02-11 2023-12-05 10X Genomics, Inc. Methods and compositions for partitioning a biological sample
US11926863B1 (en) 2020-02-27 2024-03-12 10X Genomics, Inc. Solid state single cell method for analyzing fixed biological cells
WO2021188500A1 (en) 2020-03-16 2021-09-23 Fluent Biosciences Inc. Multi-omic analysis in monodisperse droplets
CN111454942A (zh) * 2020-03-16 2020-07-28 张晓鲁 一种同一样品的转录组和基因组同时建立测序文库的构建方法
WO2021222512A1 (en) * 2020-04-30 2021-11-04 Dimensiongen Devices and methods for macromolecular manipulation
GB202007059D0 (en) * 2020-05-13 2020-06-24 Univ Oxford Innovation Ltd Polynucleotide arrays
US11851700B1 (en) 2020-05-13 2023-12-26 10X Genomics, Inc. Methods, kits, and compositions for processing extracellular molecules
EP4153775A1 (en) 2020-05-22 2023-03-29 10X Genomics, Inc. Simultaneous spatio-temporal measurement of gene expression and cellular activity
CA3185619A1 (en) * 2020-05-29 2021-12-02 Riken Method for treating cell population and method for analyzing genes included in cell population
US11932901B2 (en) 2020-07-13 2024-03-19 Becton, Dickinson And Company Target enrichment using nucleic acid probes for scRNAseq
GB202012730D0 (en) * 2020-08-14 2020-09-30 Cambridge Entpr Ltd Modular microfluidic devices, systems and methodds for total RNA analyses
WO2022099208A1 (en) * 2020-11-09 2022-05-12 The General Hospital Corporation High throughput microfluidics for analysis of immune cell activation
EP4244379A1 (en) * 2020-11-13 2023-09-20 10X Genomics, Inc. Nano-partitions (encapsulated nucleic acid processing enzymes) for cell-lysis and multiple reactions in partition-based assays
US11739443B2 (en) 2020-11-20 2023-08-29 Becton, Dickinson And Company Profiling of highly expressed and lowly expressed proteins
US20220243264A1 (en) * 2020-11-23 2022-08-04 The Broad Institute, Inc. Systems and methods for amplifying rna
CN113322254B (zh) * 2021-01-06 2022-05-20 南京诺唯赞生物科技股份有限公司 多靶点蛋白质-dna相互作用的研究方法和工具
CN114836838A (zh) * 2021-02-01 2022-08-02 南方医科大学 一种中通量单细胞拷贝数文库构建的方法及其应用
WO2022182682A1 (en) 2021-02-23 2022-09-01 10X Genomics, Inc. Probe-based analysis of nucleic acids and proteins
WO2023044307A1 (en) * 2021-09-14 2023-03-23 Becton, Dickinson And Company Full length single cell rna sequencing
WO2023154816A1 (en) * 2022-02-09 2023-08-17 Mission Bio, Inc. Systems and methods of detecting merged droplets in single cell sequencing
DK202200230A1 (en) * 2022-03-21 2023-12-11 Samplix Aps Targeted enrichment of large dna molecules for long-read sequencing using facs or microfluidic partitioning
WO2023212223A1 (en) * 2022-04-28 2023-11-02 BioSkryb Genomics, Inc. Single cell multiomics
WO2024097393A1 (en) * 2022-11-04 2024-05-10 Fluid Discovery Systems, compositions, and methods for single cell analysis

Family Cites Families (119)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
AU5733994A (en) * 1992-11-30 1994-06-22 Wellcome Foundation Limited, The Sequential targeting of tumor sites with oligonucleotide conjugates of antibody and complementary oligonucleotide conjugates of chelated radionuclide
US20020068357A1 (en) 1995-09-28 2002-06-06 Mathies Richard A. Miniaturized integrated nucleic acid processing and analysis device and method
US6143496A (en) 1997-04-17 2000-11-07 Cytonix Corporation Method of sampling, amplifying and quantifying segment of nucleic acid, polymerase chain reaction assembly having nanoliter-sized sample chambers, and method of filling assembly
US6319507B1 (en) 1997-05-02 2001-11-20 Kobo Products, Inc. Agar gel bead composition and method
ES2283936T3 (es) 1997-07-07 2007-11-01 Medical Research Council Procedimiento de clasificacion in vitro.
US6436677B1 (en) 2000-03-02 2002-08-20 Promega Corporation Method of reverse transcription
US7041208B2 (en) 2001-12-11 2006-05-09 Sau Lan Tang Staats Microfluidic devices and methods for two-dimensional separations
JP2006507921A (ja) 2002-06-28 2006-03-09 プレジデント・アンド・フェロウズ・オブ・ハーバード・カレッジ 流体分散のための方法および装置
JP4480715B2 (ja) 2003-01-29 2010-06-16 454 コーポレーション 二重末端シーケンシング
US10533998B2 (en) * 2008-07-18 2020-01-14 Bio-Rad Laboratories, Inc. Enzyme quantification
US7041481B2 (en) 2003-03-14 2006-05-09 The Regents Of The University Of California Chemical amplification based on fluid partitioning
DE10339452A1 (de) * 2003-08-22 2005-03-17 Institut für Physikalische Hochtechnologie e.V. Vorrichtung und Verfahren zur Strukturierung von Flüssigkeiten
EP2662136A3 (en) 2003-08-27 2013-12-25 President and Fellows of Harvard College Method for handling and mixing droplets
US20050069938A1 (en) 2003-09-26 2005-03-31 Youxiang Wang Amplification of polynucleotides by rolling circle amplification
EP1691792A4 (en) 2003-11-24 2008-05-28 Yeda Res & Dev COMPOSITIONS AND METHODS FOR IN VITRO / I SORTING OF MOLECULAR AND CELLULAR BANKS
KR100647282B1 (ko) 2003-12-24 2006-11-17 삼성전자주식회사 DNA 마이크로어레이 스폿팅(Spoting) 장치 및이를 이용한 스폿팅 방법
US20060201868A1 (en) 2005-03-11 2006-09-14 Simmons Blake A Methods and devices for high-throughput dielectrophoretic concentration
WO2007024798A2 (en) 2005-08-22 2007-03-01 Applera Corporation Apparatus, system, and method using immiscible-fluid-discrete-volumes
US8383059B2 (en) 2005-09-30 2013-02-26 University Of Utah Research Foundation Microfluidic interface for highly parallel addressing of sensing arrays
US9183349B2 (en) 2005-12-16 2015-11-10 Nextbio Sequence-centric scientific information management
EP1984738A2 (en) 2006-01-11 2008-10-29 Raindance Technologies, Inc. Microfluidic devices and methods of use in the formation and control of nanoreactors
US7998708B2 (en) 2006-03-24 2011-08-16 Handylab, Inc. Microfluidic system for amplifying and detecting polynucleotides in parallel
EP2530167A1 (en) 2006-05-11 2012-12-05 Raindance Technologies, Inc. Microfluidic Devices
WO2007140015A2 (en) * 2006-05-26 2007-12-06 Althea Technologies, Inc Biochemical analysis of partitioned cells
ES2397971T3 (es) 2006-06-02 2013-03-12 Pfizer Products Incorporated Ensayo de células tumorales circulantes
DK2415872T3 (en) 2006-12-14 2016-08-22 Dow Agrosciences Llc Optimized non-canonical zinc finger proteins
US8338166B2 (en) 2007-01-04 2012-12-25 Lawrence Livermore National Security, Llc Sorting, amplification, detection, and identification of nucleic acid subsequences in a complex mixture
WO2008109176A2 (en) 2007-03-07 2008-09-12 President And Fellows Of Harvard College Assays and other reactions involving droplets
US8454906B2 (en) 2007-07-24 2013-06-04 The Regents Of The University Of California Microfabricated droplet generator for single molecule/cell genetic analysis in engineered monodispersed emulsions
US8268564B2 (en) 2007-09-26 2012-09-18 President And Fellows Of Harvard College Methods and applications for stitched DNA barcodes
GB0720202D0 (en) * 2007-10-16 2007-11-28 Cambridge Entpr Ltd Microfluidic systems
WO2009092106A1 (en) 2008-01-18 2009-07-23 The Regents Of The University Of California Accurate and rapid micromixer for integrated microfluidic devices
US8030095B2 (en) 2008-03-04 2011-10-04 Crystal Bioscience Inc. Gel microdrop composition and method of using the same
US9409177B2 (en) 2008-03-21 2016-08-09 Lawrence Livermore National Security, Llc Chip-based device for parallel sorting, amplification, detection, and identification of nucleic acid subsequences
WO2009137415A2 (en) 2008-05-03 2009-11-12 Advanced Liquid Logic, Inc. Reagent and sample preparation, loading, and storage
WO2011120024A1 (en) 2010-03-25 2011-09-29 Quantalife, Inc. Droplet generation for droplet-based assays
US9156010B2 (en) 2008-09-23 2015-10-13 Bio-Rad Laboratories, Inc. Droplet-based assay system
US8709762B2 (en) 2010-03-02 2014-04-29 Bio-Rad Laboratories, Inc. System for hot-start amplification via a multiple emulsion
US20130084572A1 (en) 2011-09-30 2013-04-04 Quantalife, Inc. Calibrations and controls for droplet-based assays
US9132394B2 (en) 2008-09-23 2015-09-15 Bio-Rad Laboratories, Inc. System for detection of spaced droplets
JP5457222B2 (ja) 2009-02-25 2014-04-02 エフ.ホフマン−ラ ロシュ アーゲー 小型化ハイスループット核酸分析
DK2977455T3 (da) 2009-06-15 2020-07-13 Complete Genomics Inc Fremgangsmåde til langfragmentaflæsnings-sekventering
CN102483424B (zh) 2009-06-26 2014-11-05 哈佛学院院长等 用于流体操作的方法以及微流体装置
EP2473618B1 (en) 2009-09-02 2015-03-04 Bio-Rad Laboratories, Inc. System for mixing fluids by coalescence of multiple emulsions
US9625454B2 (en) * 2009-09-04 2017-04-18 The Research Foundation For The State University Of New York Rapid and continuous analyte processing in droplet microfluidic devices
US8746285B2 (en) 2009-09-04 2014-06-10 Auburn University Programmable fluidic droplet generation
US9376713B2 (en) 2009-09-23 2016-06-28 The Board Of Trustees Of The University Of Illinois Label free detection of nucleic acid amplification
US9890408B2 (en) 2009-10-15 2018-02-13 Ibis Biosciences, Inc. Multiple displacement amplification
US9315857B2 (en) 2009-12-15 2016-04-19 Cellular Research, Inc. Digital counting of individual molecules by stochastic attachment of diverse label-tags
US8835358B2 (en) 2009-12-15 2014-09-16 Cellular Research, Inc. Digital counting of individual molecules by stochastic attachment of diverse labels
US20120270739A1 (en) 2010-01-19 2012-10-25 Verinata Health, Inc. Method for sample analysis of aneuploidies in maternal samples
AU2013203624B2 (en) 2010-02-09 2015-06-25 General Electric Company Isothermal amplification of nucleic acid using a mixture of randomized primers and specific primers
US9366632B2 (en) 2010-02-12 2016-06-14 Raindance Technologies, Inc. Digital analyte analysis
CA2767114A1 (en) 2010-03-25 2011-09-29 Bio-Rad Laboratories, Inc. Droplet transport system for detection
JP5573335B2 (ja) 2010-04-28 2014-08-20 株式会社島津製作所 磁性体粒子操作デバイス及び磁性体粒子操作方法
WO2011154042A1 (en) 2010-06-10 2011-12-15 Albert-Ludwigs-Universität Freiburg Apparatus and method for dispensing cells or particles confined in a free flying droplet
US9650629B2 (en) 2010-07-07 2017-05-16 Roche Molecular Systems, Inc. Clonal pre-amplification in emulsion
WO2012011091A2 (en) 2010-07-22 2012-01-26 Gencell Biosystems Limited Composite liquid cells
EP2608878A4 (en) 2010-08-23 2017-11-15 President and Fellows of Harvard College Acoustic waves in microfluidics
EP3447155A1 (en) 2010-09-30 2019-02-27 Raindance Technologies, Inc. Sandwich assays in droplets
EP2436444A1 (en) 2010-10-01 2012-04-04 Centre National de la Recherche Scientifique (C.N.R.S.) Microfluidic device for production and collection of droplets of a fluid
ES2731460T3 (es) 2010-10-08 2019-11-15 Harvard College Alto rendimiento de células individuales con código de barra
US20120258881A1 (en) 2010-11-22 2012-10-11 The University Of Chicago Methods and/or Use of Oligonucleotide Conjugates for Assays and Microscopy/Imaging Detections
ES2615733T3 (es) 2010-12-16 2017-06-08 Gigagen, Inc. Métodos para el análisis masivo paralelo de ácidos nucleicos en células individuales
US20130295587A1 (en) 2011-01-24 2013-11-07 Ge Healthcare Bio-Sciences Ab Method of coupling binding agents to a substrate surface
US8765455B2 (en) 2011-01-27 2014-07-01 Lawrence Livermore National Security, Llc Chip-based droplet sorting
WO2012106385A2 (en) * 2011-01-31 2012-08-09 Apprise Bio, Inc. Methods of identifying multiple epitopes in cells
EP2670894B1 (en) 2011-02-02 2017-11-29 University Of Washington Through Its Center For Commercialization Massively parallel continguity mapping
EP3859011A1 (en) * 2011-02-11 2021-08-04 Bio-Rad Laboratories, Inc. Methods for forming mixed droplets
US9150852B2 (en) * 2011-02-18 2015-10-06 Raindance Technologies, Inc. Compositions and methods for molecular labeling
EP2697397B1 (en) 2011-04-15 2017-04-05 The Johns Hopkins University Safe sequencing system
EP3789498A1 (en) 2011-04-25 2021-03-10 Bio-rad Laboratories, Inc. Methods for nucleic acid analysis
WO2012162267A2 (en) 2011-05-20 2012-11-29 Fluidigm Corporation Nucleic acid encoding reactions
EP2714254B1 (en) 2011-05-23 2017-09-06 President and Fellows of Harvard College Control of emulsions, including multiple emulsions
US8841071B2 (en) 2011-06-02 2014-09-23 Raindance Technologies, Inc. Sample multiplexing
US8658430B2 (en) 2011-07-20 2014-02-25 Raindance Technologies, Inc. Manipulating droplet size
US20130189700A1 (en) 2011-07-25 2013-07-25 Bio-Rad Laboratories, Inc. Breakage of an emulsion containing nucleic acid
JP6161607B2 (ja) 2011-07-26 2017-07-12 ベリナタ ヘルス インコーポレイテッド サンプルにおける異なる異数性の有無を決定する方法
US20130032235A1 (en) 2011-08-02 2013-02-07 Teledyne Dalsa Semiconductor, Inc. Integrated microfluidic check valve and device including such a check valve
US9469874B2 (en) * 2011-10-18 2016-10-18 The Regents Of The University Of California Long-range barcode labeling-sequencing
US9483374B2 (en) 2011-12-21 2016-11-01 Intel Corporation PSMI using at-speed scan capture
KR20140122751A (ko) 2012-02-08 2014-10-20 프레지던트 앤드 펠로우즈 오브 하바드 칼리지 유체 파열을 사용한 액적 형성
WO2013126741A1 (en) 2012-02-24 2013-08-29 Raindance Technologies, Inc. Labeling and sample preparation for sequencing
US11177020B2 (en) 2012-02-27 2021-11-16 The University Of North Carolina At Chapel Hill Methods and uses for molecular tags
EP2823064B1 (en) 2012-03-05 2019-02-06 President and Fellows of Harvard College Methods for epigenetic sequencing
US20150132754A1 (en) * 2012-05-14 2015-05-14 Cb Biotechnologies, Inc. Method for increasing accuracy in quantitative detection of polynucleotides
CA2881783A1 (en) 2012-08-13 2014-02-20 The Regents Of The University Of California Methods and systems for detecting biological components
US9567631B2 (en) 2012-12-14 2017-02-14 10X Genomics, Inc. Methods and systems for processing polynucleotides
US20140378345A1 (en) * 2012-08-14 2014-12-25 10X Technologies, Inc. Compositions and methods for sample processing
CA3216609C (en) 2012-08-14 2024-05-14 10X Genomics, Inc. Microcapsule compositions and methods
US20140378349A1 (en) 2012-08-14 2014-12-25 10X Technologies, Inc. Compositions and methods for sample processing
WO2014039912A1 (en) 2012-09-07 2014-03-13 Bio-Rad Laboratories, Inc. Compositions, systems and methods for droplet formation, spacing and detection
WO2014047556A1 (en) 2012-09-21 2014-03-27 The Broad Institute, Inc. Compositions and methods for long insert, paired end libraries of nucleic acids in emulsion droplets
EP2925449A2 (en) 2012-11-27 2015-10-07 Gencell Biosystems Limited Handling liquid samples
WO2014108323A1 (en) 2013-01-10 2014-07-17 Eth Zurich Method and apparatus for depositing droplets onto a substrate
EP2964776A4 (en) 2013-03-04 2017-04-19 Verax Biomedical, Inc. Multi-analyte assay
WO2014153071A1 (en) 2013-03-14 2014-09-25 The Broad Institute, Inc. Methods for quantitating dna using digital multiple displacement amplification
US9752179B2 (en) * 2013-03-14 2017-09-05 Cold Spring Harbor Laboratory Trans-splicing transcriptome profiling
US9816088B2 (en) * 2013-03-15 2017-11-14 Abvitro Llc Single cell bar-coding for antibody discovery
KR102168053B1 (ko) 2013-03-15 2020-10-20 더 리전트 오브 더 유니버시티 오브 캘리포니아 고속 온 디맨드 미세유체 액적 생성 및 조작
US9328382B2 (en) * 2013-03-15 2016-05-03 Complete Genomics, Inc. Multiple tagging of individual long DNA fragments
GB2546833B (en) 2013-08-28 2018-04-18 Cellular Res Inc Microwell for single cell analysis comprising single cell and single bead oligonucleotide capture labels
US10947587B2 (en) 2013-11-05 2021-03-16 The Regents Of The University Of California Single-cell forensic short tandem repeat typing within microfluidic droplets
EP3105326A4 (en) 2014-02-10 2018-01-10 Gencell Biosystems Limited Composite liquid cell (clc) mediated nucleic acid library preparation device, and methods for using the same
CN113215221A (zh) 2014-04-08 2021-08-06 华盛顿大学商业中心 用于使用多分散小滴执行数字检定的方法和设备
US20150298091A1 (en) 2014-04-21 2015-10-22 President And Fellows Of Harvard College Systems and methods for barcoding nucleic acids
CN106574925B (zh) 2014-05-23 2019-07-26 萤火虫生物股份有限公司 用于生物测定的底物介导的反应器
JP6666268B2 (ja) 2014-06-11 2020-03-13 サンプリクス アンパーツゼルスカブ 液滴ソートによるヌクレオチド配列排除富化(needls)
EP4053292A1 (en) * 2014-06-26 2022-09-07 10X Genomics, Inc. Methods of analyzing nucleic acids from individual cells or cell populations
WO2015200717A2 (en) 2014-06-27 2015-12-30 The Regents Of The University Of California Pcr-activated sorting (pas)
WO2016064755A2 (en) 2014-10-20 2016-04-28 The Regents Of The University Of Califronia Rapid modulation of droplet composition with membrane microvalves
WO2016065056A1 (en) 2014-10-22 2016-04-28 The Regents Of The University Of California High definition microdroplet printer
US11111519B2 (en) 2015-02-04 2021-09-07 The Regents Of The University Of California Sequencing of nucleic acids via barcoding in discrete entities
US20170022538A1 (en) 2015-02-04 2017-01-26 The Regents Of The University Of California Multiple-emulsion nucleic acid amplification
US20180237836A1 (en) 2015-08-17 2018-08-23 The Regents Of The University Of California Microdroplet-Based Multiple Displacement Amplification (MDA) Methods and Related Compositions
WO2017184707A1 (en) 2016-04-19 2017-10-26 President And Fellows Of Harvard College Immobilization-based systems and methods for genetic analysis and other applications
WO2018031691A1 (en) 2016-08-10 2018-02-15 The Regents Of The University Of California Combined multiple-displacement amplification and pcr in an emulsion microdroplet
CN110462053A (zh) 2016-12-21 2019-11-15 加利福尼亚大学董事会 使用基于水凝胶的液滴进行单细胞基因组测序
EP4212629A1 (en) 2017-11-17 2023-07-19 10X Genomics, Inc. Methods and systems for associating physical and genetic properties of biological particles

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