Classifications

• • C—CHEMISTRY; METALLURGY
  • C07—ORGANIC CHEMISTRY
  • C07F—ACYCLIC, CARBOCYCLIC OR HETEROCYCLIC COMPOUNDS CONTAINING ELEMENTS OTHER THAN CARBON, HYDROGEN, HALOGEN, OXYGEN, NITROGEN, SULFUR, SELENIUM OR TELLURIUM
  • C07F5/00—Compounds containing elements of Groups 3 or 13 of the Periodic Table
  • C07F5/02—Boron compounds
  • C07F5/025—Boronic and borinic acid compounds
• • C—CHEMISTRY; METALLURGY
  • C07—ORGANIC CHEMISTRY
  • C07D—HETEROCYCLIC COMPOUNDS
  • C07D213/00—Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members
  • C07D213/02—Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members having three double bonds between ring members or between ring members and non-ring members
  • C07D213/04—Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members having three double bonds between ring members or between ring members and non-ring members having no bond between the ring nitrogen atom and a non-ring member or having only hydrogen or carbon atoms directly attached to the ring nitrogen atom
  • C07D213/60—Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members having three double bonds between ring members or between ring members and non-ring members having no bond between the ring nitrogen atom and a non-ring member or having only hydrogen or carbon atoms directly attached to the ring nitrogen atom with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
  • C07D213/78—Carbon atoms having three bonds to hetero atoms, with at the most one bond to halogen, e.g. ester or nitrile radicals
  • C07D213/79—Acids; Esters
  • C07D213/803—Processes of preparation
• • C—CHEMISTRY; METALLURGY
  • C07—ORGANIC CHEMISTRY
  • C07D—HETEROCYCLIC COMPOUNDS
  • C07D213/00—Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members
  • C07D213/02—Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members having three double bonds between ring members or between ring members and non-ring members
  • C07D213/04—Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members having three double bonds between ring members or between ring members and non-ring members having no bond between the ring nitrogen atom and a non-ring member or having only hydrogen or carbon atoms directly attached to the ring nitrogen atom
  • C07D213/60—Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members having three double bonds between ring members or between ring members and non-ring members having no bond between the ring nitrogen atom and a non-ring member or having only hydrogen or carbon atoms directly attached to the ring nitrogen atom with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
  • C07D213/78—Carbon atoms having three bonds to hetero atoms, with at the most one bond to halogen, e.g. ester or nitrile radicals
  • C07D213/79—Acids; Esters
  • C07D213/803—Processes of preparation
  • C07D213/807—Processes of preparation by oxidation of pyridines or condensed pyridines

Definitions

• Embodiments of the present disclosure relate to methods of isolating 4-chloro-2-fluoro-3-substituted-phenylboronates, and to methods of using 4-chloro-2-fluoro-3-substituted-phenylboronates.
• Embodiments of the present disclosure also relate to methods of isolating dimethyl 4-chloro-2-fluoro-3-methoxyphenylboronate (PBA-diMe), and to methods of using the same.
• PBA may be synthesized by reacting 2-chloro-6-fluoroanisole with n -butyl lithium and trimethyl borate B(OMe) 3 , adding an aqueous base to the reaction mixture, diluting the reaction mixture with acetonitrile, and acidifying the reaction mixture with hydrochloric acid. PBA may be esterified using 1,3-propanediol to form PBE.
• An embodiment of the present disclosure includes a method of isolating a 4-chloro-2-fluoro-3-substituted-phenylboronate that comprises adding carbon dioxide gas or carbon dioxide solid (dry ice) to a solution comprising a 4-chloro-2-fluoro-3-substituted-phenylboronate, an inert organic solvent, and at least one lithium salt to react the at least one lithium salt with the carbon dioxide gas and form a mixture comprising the 4-chloro-2-fluoro-3-substituted-phenylboronate, the inert organic solvent, and a precipitated solid.
• the precipitated solid may be removed from the mixture.
• Another embodiment of the present disclosure includes a method of synthesizing and isolating dimethyl 4-chloro-2-fluoro-3-methoxylphenylboronate that comprises contacting a solution comprising 2-chloro-6-fluoroanisole and 1,2-dimethoxyethane with n -butyl lithium to form a reaction mixture comprising 6-chloro-2-fluoro-3-lithioanisole and the 1,2-dimethoxyethane.
• the reaction mixture may be contacted with trimethyl borate to form a salinated phenyl boronate solution comprising dimethyl 4-chloro-2-fluoro-3-methoxyphenylboronate, the 1,2-dimethoxyethane, and at least one lithium salt.
• Carbon dioxide gas or carbon dioxide solid may be introduced to the salinated phenyl boronate solution to form a mixture comprising the dimethyl 4-chloro-2-fluoro-3-methoxyphenylboronate, the 1,2-dimethoxyethane, and lithium methyl carbonate.
• the lithium methyl carbonate may be separated to form a desalinated phenyl boronate solution comprising the dimethyl 4-chloro-2-fluoro-3-methoxyphenylboronate and the 1,2-dimethoxyethane.
• Yet another embodiment of the present disclosure includes a method of using a 4-chloro-2-fluoro-3-substituted-phenylboronate isolated by the above method, comprising reacting the 4-chloro-2-fluoro-3-substituted-phenylboronate with a 4-acetamido-3,6-dichloropicolinate, e.g., methyl 4-acetylamino-3,6-dichloropyridine-2-carboxylate , to produce a 6-(4-chloro-2-fluoro-3-substituted-phenyl)-4-aminopicofinate, e.g., methyl 4-amino-3-chloro-6-(4-chloro-2-fluoro-3-methoxyphenyl)pyridine-2-carboxylate.
• a 4-acetamido-3,6-dichloropicolinate e.g., methyl 4-acetylamino-3,6-dichloropyr
• a particular embodiment of the present disclosure includes a 4-chloro-2-fluoro-3-substituted-phenylboronate produced by a process that comprises adding carbon dioxide gas or carbon dioxide solid (dry ice) to a solution comprising a 4-chloro-2-fluoro-3-substituted-phenylboronate, an inert organic solvent, and at least one lithium salt to react the at least one lithium salt with the carbon dioxide gas and form a mixture comprising the 4-chloro-2-fluoro-3-substituted-phenylboronate, the inert organic solvent, and a precipitated solid. The precipitated solid may then be removed from the mixture.
• the yield of the 4-chloro-2-fluoro-3-substituted-phenylboronate is greater than or equal to about 90%.
• WO2007/082076 WO2007/082098 , WO2009/023438 , WO2009/029735 and Paul Zhichkin et al., Synthesis, 2011, no. 10, 1604-1608 , disclose methods of isolating boronates.
• the 4-chloro-2-fluoro-3-substituted-phenylboronate may be synthesized by reacting a solution including a 1-chloro-3-fluoro-2-substituted benzene and an inert organic solvent with an alkyl lithium and an electrophilic boronic acid derivative to form a salinated phenyl boronate solution including the 4-chloro-2-fluoro-3-substituted-phenylboronate, the inert organic solvent, and at least one lithium salt.
• the 4-chloro-2-fluoro-3-substituted-phenylboronate may be isolated from the at least one lithium salt by exposing the phenyl boronate solution to carbon dioxide (CO 2 ) gas or carbon dioxide solid (dry ice). Following filtration, a desalinated phenyl boronate solution including the 4-chloro-2-fluoro-3-substituted-phenylboronate in the inert organic solvent may be obtained.
• the desalinated phenyl boronate solution may be used directly in further reactions, such as a Suzuki coupling reaction, to produce additional chemical compounds, such as 6-(4-chloro-2-fluoro-3-substituted-phenyl)-4-aminopicolinates, e.g., methyl-4-amino-3-chloro-6-(4-chloro-2-fluoro-3-substituted-phenyl)pyridine-2-carboxylates.
• a reaction scheme for the preparation of a 4-chloro-2-fluoro-3-substituted-phenylboronate from a 1-chloro-3-fluoro-2-substituted benzene is shown below: where X is F, OR 1 , or NR 2 R 3 , Y is H or F, each of R 1 , R 2 , and R 3 is independently a methyl group, an ethyl group, a propyl group, or a butyl group, and M is a boronic acid derivative.
• the reaction scheme is described in detail below.
• An alkyl lithium may be added or introduced to a solution including the 1-chloro-3-fluoro-2-substituted benzene to facilitate a lithiation reaction between the 1-chloro-3-fluoro-2-substituted benzene and the alkyl lithium and form a reaction mixture including a lithiated 1-chloro-3-fluoro-2-substituted benzene.
• the 1-chloro-3-fluoro-2-substituted benzene is 2-chloro-6-fluoroanisole (2,6-CFA).
• 1-chloro-3-fluoro-2-substituted benzenes may be produced by conventional techniques, which are not described in detail herein.
• the alkyl lithium may be any compound including lithium and an alkyl functional group (i.e., of straight chain, branched chain, or cyclic configuration), such as methyl, ethyl, 1-methylethyl, propyl, cyclopropyl, butyl, 1,1-dimethylethyl, cyclobutyl, 1-methylpropyl, or hexyl.
• the alkyl lithium may include methyl lithium, n -butyl lithium ( n -BuLi), s -butyl lithium, t -butyl lithium, or propyl lithium.
• the alkyl lithium is n -BuLi.
• Alkyl lithiums are commercially available from numerous sources, including but not limited to, Sigma-Aldrich Co. (St. Louis, MO).
• the 1-chloro-3-fluoro-2-substituted benzene is 2,6-CFA and the alkyl lithium is n -BuLi
• the lithiated 1-chloro-3-fluoro-2-substituted benzene may be 6-chloro-2-fluoro-3-lithioanisole (Li-2,6-CFA).
• the lithiation reaction may be conducted in an inert organic solvent in which the 1-chloro-3-fluoro-2-substituted benzene is at least partially soluble.
• the 1-chloro-3-fluoro-2-substituted benzene is at least substantially dissolved in the inert organic solvent.
• the inert organic solvent may include, but is not limited to, a C 5 -C 8 hydrocarbon (i.e., of straight-chain, branched, or cyclic configuration), such as a pentane, a hexane, a cyclohexane, an iso-octane, an ether (e.g., diethyl ether, tetrahydrofuran, dioxane, glycol ethers including 1,2-dimethoxyethane), or combinations thereof.
• the inert organic solvent is 1,2-dimethoxyethane (DME).
• At least one molar equivalent of the alkyl lithium may be used relative to the 1-chloro-3-fluoro-2-substituted benzene.
• the alkyl lithium may be added in a slight excess relative to the 1-chloro-3-fluoro-2-substituted benzene compound, such as from about 1% to about 10% molar excess relative to the 1-chloro-3-fluoro-2-substituted benzene, or from about 2% to about 5% molar excess relative to the 1-chloro-3-fluoro-2-substituted benzene.
• the lithiation reaction may be conducted under anhydrous conditions, at atmospheric pressure or greater, and at a temperature of less than or equal to about -30°C, preferably less than -50°C, such as less than about -65°C.
• the reaction mixture may be agitated (e.g., via stirring, ultrasonically agitating, shaking a containment vessel) for a sufficient amount of time to facilitate the deprotonation of the 1-chloro-3-fluoro-2-substituted benzene at a position (C4) between a carbon atom (C3) to which the fluoro substituent is bonded and another carbon atom (C5) to which the Y group is bonded.
• the lithiation reaction may be conducted under an inert atmosphere, such as under a nitrogen (N 2 ) atmosphere.
• An electrophilic boronic acid derivative may be added or introduced to the reaction mixture to react with or contact the lithiated 1-chloro-3-fluoro-2-substituted benzene and form a salinated phenyl boronate solution including a (4-chloro-2-fluoro-3-substituted-phenyl)boronate, the inert organic solvent, and at least one lithium salt, such as lithium methoxide.
• the electrophilic boronic acid derivative may be a trialkyl borate, such as trimethyl borate (B(OMe) 3 ), triisopropyl borate (B(O i Pr)3 or triethyl borate (B(OEt) 3 ).
• the electrophilic boronic acid derivative is B(OMe) 3 .
• the electrophilic boronic acid derivative is B(OMe) 3 and the lithiated 1-chloro-3-fluoro-2-substituted benzene is Li-2,6-CFA
• the 4-chloro-2-fluoro-3-substituted-phenylboronate may be dimethyl 4-chloro-2-fluoro-3-methoxyphenylboronate (PBA-diMe).
• the electrophilic boronic acid derivative may be added slowly, while maintaining a temperature of the reaction mixture of less than or equal to about -65°C.
• the reaction mixture may be agitated for an amount of time sufficient for the electrophilic boronic acid derivative to react with the lithiated 1-fluoro-2-substituted-3-chlorobenzene.
• the salinated phenyl boronate solution may have a temperature within a range of from about 20°C to about 25°C (e.g., ambient temperature).
• CO 2 gas may be added or introduced to the salinated phenyl boronate solution (e.g., bubbling CO 2 through the salinated phenyl boronate solution) or adding carbon dioxide solid (dry ice) to react with the at least one lithium salt and form a mixture including precipitated solids, such as lithium methyl carbonate.
• the precipitated solids may be substantially separated or removed (e.g., via filtering the mixture) to form a desalinated phenyl boronate solution including the 4-chloro-2-fluoro-3-substituted-phenylboronate in the inert organic solvent.
• the desalinated phenyl boronate solution includes PBA-diMe in DME.
• the 4-chloro-2-fluoro-3-substituted-phenylboronate may remain in the desalinated phenyl boronate solution and may be used directly in subsequent reactions without additional concentration or drying.
• the desalinated phenyl boronate solution may be desolvated under reduced pressure or by crystallization to isolate the 4-chloro-2-fluoro-3-substituted-phenylboronate as a solid.
• 2,6-CFA may be reacted with n -BuLi in anhydrous DME at a temperature of less than or equal to about -65°C to form the reaction mixture including Li-2,6-CFA.
• B(OMe) 3 may be added or introduced to the reaction mixture where it may react with or contact the Li-2,6,CFA and form the salinated phenyl boronate solution including PBA-diMe, DME, and at least one lithium salt.
• CO 2 may be bubbled through the salinated phenyl boronate solution to react with or contact the at least one lithium salt and form the mixture including lithium methyl carbonate, PBA-diMe, and DME.
• the mixture may be filtered to substantially remove the lithium methyl carbonate and form the desalinated phenyl boronate solution including PBA-diMe in DME.
• a yield of the PBA-diMe may be greater than or equal to about 90%, such as greater than or equal to about 95%, or greater than or equal to about 97%.
• the desalinated phenyl boronate solution or a 4-chloro-2-fluoro-3-substituted-phenylboronate solid may be utilized in additional chemical reactions, such as a Suzuki coupling reaction.
• the desalinated phenyl boronate solution (or the 4-chloro-2-fluoro-3-substituted-phenylboronate solid) may undergo a cross-coupling reaction with methyl 4-acetylamino-3,6-dichloropyridine-2-carboxylate (i.e., acetylated aminopyralid methyl ester-AcAP-Me), to produce or form a methyl 4-acetylamino-3-chloro-6-(4-chloro-2-fluoro-3-substituted-phenyl)pyridine-2-carboxylate, such as methyl 4-acetylamino-3-chloro-6-(4-chloro-2-fluoro-3-substitute
• the cross-coupling reaction may occur in the presence of a palladium catalyst, a ligand, and a base.
• the palladium catalyst is palladium(II)acetate (Pd(OAc) 2 )
• the base is aqueous potassium carbonate (K 2 CO 3 )
• the ligand is triphenylphosphine (PPh 3 ).
• the AcAP-Me may be used as a solid or may be provided in a solvent such as MIBK, MeCN, EtOAc, toluene, water, or combinations thereof.
• PBA-diMe may be used to produce 2-(4-chloro-2-fluoro-3 methoxyphenyl)-6-amino-4-pyrimidinecarboxylic acid.
• the coupling partner to PBA-diMe would be methyl 6-acetylamino-2-chloropyrimidine-4-carboxylate or its unprotected version the 6-amino-2-chloropyrimidine-4-carboxylic acid.
• the palladium catalyst, the ligand, and the base may be added to a deoxygenated mixture including the AcAP-Me and the desalinated phenyl boronate solution (or the 4-chloro-2-fluoro-3-substituted-phenylboronate solid) to form a coupling reaction mixture.
• the coupling reaction mixture may be agitated at a temperature within a range of from about 40°C to about 70°C for a sufficient amount of time to complete a cross-coupling reaction and form a third multi-phase solution having an organic phase including the 6-(4-chloro-2-fluoro-3-substituted-phenyl)-4-amino picolinate, e.g., methyl-4-amino-3-chloro-6-(4-chloro-2-fluoro-3-substituted-phenyl)pyridine-2-carboxylate.
• the palladium catalyst may be removed (e.g., by exposing the third multi-phase solution to celite), and the organic phase may be separated or extracted.
• a yield of Ac729-Me may be greater than about 85%, such as greater than about 90%, or greater than about 95%.
• adding or introducing CO 2 gas or CO 2 solid (dry ice) to the salinated phenyl boronate solution facilitates the removal of the at least one lithium salt, enabling methyl-4-acetylamino-3-chloro-6-(4-chloro-2-fluoro-3-substituted-phenyl)pyridine-2-carboxylate to be produced in good yields (e.g., greater than or equal to 85%) through a coupling reaction between the desalinated phenyl boronate solution and AcAP-Me.
• Adding or introducing CO 2 gas or CO 2 solid (dry ice) to the salinated phenyl boronate solution to isolate the 4-chloro-2-fluoro-3-substituted-phenylboronate in the inert organic solvent also provides the opportunity to recycle or recover the inert organic solvent before any water has been added or introduced to the inert organic solvent.
• the inert organic solvent is kept substantially water-free (commonly referred to as being "dry").
• the bath was maintained at -76°C during the experiment by adding dry ice chunks periodically.
• the 2,6-CFA solution was allowed to cool to -72°C.
• n -BuLi in hexanes (2.5 M, 41.5 ml) was loaded into a 60 mL plastic syringe and positioned on a syringe pump.
• the syringe pump was started with an addition rate of 0.7 ml/min.
• the n-BuLi addition was complete after 64 minutes.
• the reaction solution was held as -72°C for 57 minutes.
• B(OMe) 3 (13.1g, 14.06 mL) was loaded into a 24 mL plastic syringe and positioned on the syringe pump.
• the agitator was increased to 302 rpm. With the reaction solution at -72°C, the syringe pump was started with an addition rate of 0.4 mL/min. The borate addition was complete after 40 minutes. The reaction solution was left in the cold bath over night at 220 rpm agitation. A total of 153 g of the reaction solution containing PBA-diMe was collected. A GC method with an internal standard was used to quantify the amount of PBA-diMe in solution. A conversion to PBA-diMe of 98% was calculated with 2% of the original unconverted 2,6-CFA also quantified. The PBA-diMe solution was stirred at 18°C in the reactor.
• the agitator was started and set to 294 rpm. CO 2 gas from a small lecture bottle was slowly bubbled into the solution through a 1 ⁇ 4 inch (0.635 cm) glass tube over 42 minutes. The solution heated to 21 °C. A total of 7.2 g (1.5 equivalents) of CO 2 gas was added. The mixture was very cloudy with fine white solids. The mixture (153 g) was filtered in a 7.5 cm Buchner funnel using #1 Whatman filter paper and a water aspirator. Fine white solids were removed (lithium methyl carbonate). 3.5 g of hexane was used to rinse the solids. 141 g of filtrate was collected. 3.5 g of dry white solids were collected.
• the PBA-diMe filtrate solution was place in a 500 mL round bottom flask on a roto-vap fitted with a water aspirator, dry ice trap, and an overhead receiver.
• the roto-vap was started with the bath at 25°C.
• the vacuum ranged from 45 mmHg down to 15 mmHg and the final bath temperature was 31°C.
• 106.5 g of overhead solvent was collected and 30.1 g of bottoms remained.
• Analysis of the bottoms by GC gave 59.4 % by weight of PBA. The procedure resulted in 97% recovery of PBA.
• Some of the PBA-diMe filtrate solution was used in a Suzuki coupling reaction.
• reaction mixture was stirred for 5 minutes before adding an aqueous solution of K 2 CO 3 (22.8 %, 17 mL, previously sparged for 30 minutes with N 2 ).
• the reaction mixture was heated to 65°C and stirred for 2 hours. After 2 hours the reaction was sampled by GC to determine completion of the reaction. Once the reaction was complete the mixture was transferred to a heated separatory funnel and the phases separated. The organic phase was sampled by GC with an internal standard (valerophenone) to yield Ac729-Me (3.55 g, 81 %) with an 89 % conversion.
• 2,6-CFA 144.5g, 900 mmol was weighed directly into a 3-neck 2-L round bottom flask equipped with an overhead mechnical stirrer, a thermocouple temperature probe, and a N 2 inlet.
• Anhydrous DME (1125 mL) was added to the round bottom flask.
• the reaction was cooled to -78°C with a dry ice/acetone bath. Once the reaction reached about -77°C n -BuLi (425 mL, 1035 mmol, 2.5M in Hexanes) was slowly added dropwise using a syringe pump over a 1 hour period. The highest temperature reached during addition was -68.8°C.
• the PBA-diMe was analyzed by GC using an internal standard (valerophenone) to give a 17.07% by weight of PBE (13.02% by weight of PBA). The procedure resulted in 95 % recovery of PBA.
• Some of the PBA-diMe solution was used in a Suzuki Coupling reaction.
• PPh 3 90 mg, 0.342 mmol
• TBAB 37 mg, 0.114 mmol

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