DK2205749T3 - Modificerede zinkfingerproteiner, som er målrettet mod 5-enolpyruvylshikimat-3-phosphat-syntasegener - Google Patents

Modificerede zinkfingerproteiner, som er målrettet mod 5-enolpyruvylshikimat-3-phosphat-syntasegener Download PDF

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DK2205749T3
DK2205749T3 DK08833882.7T DK08833882T DK2205749T3 DK 2205749 T3 DK2205749 T3 DK 2205749T3 DK 08833882 T DK08833882 T DK 08833882T DK 2205749 T3 DK2205749 T3 DK 2205749T3
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epsps
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cleavage
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Manju Gupta
Asha M Palta
Stephen Novak
Fyodor Urnov
Sunita Gopalan
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Dow Agrosciences Llc
Sangamo Biosciences Inc
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    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
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    • C12N9/10Transferases (2.)
    • C12N9/1085Transferases (2.) transferring alkyl or aryl groups other than methyl groups (2.5)
    • C12N9/10923-Phosphoshikimate 1-carboxyvinyltransferase (2.5.1.19), i.e. 5-enolpyruvylshikimate-3-phosphate synthase
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    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
    • C12N15/8241Phenotypically and genetically modified plants via recombinant DNA technology
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    • C12N15/8243Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits involving biosynthetic or metabolic pathways, i.e. metabolic engineering, e.g. nicotine, caffeine
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    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
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    • C12N15/82Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
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    • C12N15/8271Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance
    • C12N15/8274Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for herbicide resistance
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    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2319/00Fusion polypeptide
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    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2319/00Fusion polypeptide
    • C07K2319/80Fusion polypeptide containing a DNA binding domain, e.g. Lacl or Tet-repressor
    • C07K2319/81Fusion polypeptide containing a DNA binding domain, e.g. Lacl or Tet-repressor containing a Zn-finger domain for DNA binding

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Claims (20)

1
1. Zinkfingerprotein (ZFP), som binder sig til en genomisk EPSPS-målregion af interesse, hvilket ZFP omfatter et eller flere zinkfingerbindingsdomæner, hvor 5 ZFP'et omfatter de genkendelseshelixregioner, der er vist i en enkelt række i tabel A.
2. ZFP ifølge krav 1, hvor ZFP'et er et fusionsprotein, som omfatter et eller flere funktionelle domæner valgt fra gruppen bestående af en 10 transskriptionsrepressor, en endonuklease, en methyltransferase, en histondeacetylase, en transskriptionsaktivator og en histonacetyltransferase.
3. ZFP ifølge krav 2, hvor ZFP'et er en zinkfingernuklease (ZFN), som spalter den genomiske EPSPS-målregion af interesse, hvor ZFN'en omfatter et eller 15 flere modificerede zinkfingerbindingsdomæner og et nukleasespaltningsdomæne, og hvor ZFN'en endvidere eventuelt spalter en eller flere paraloge eller ortologe EPSPS-gensekvenser, der omfatter en nukleotidsekvens valgt fra gruppen bestående af SEQ ID NO: 10-14 eller en hvilken som helst sekvens, som udviser mindst ca. 80-100% sekvensidentitet 20 dermed.
4. Polynukleotid, som koder for et eller flere zinkfingerproteiner (ZFP'er) ifølge et hvilket som helst af kravene 1-3.
5. Planteværtscelle, som omfatter et eller flere polynukleotider ifølge krav 4, hvor cellen er forbigående eller stabilt transficeret med polynukleotidet eller polynukleotiderne.
6. Fremgangsmåde til spaltning af et eller flere EPSPS-gener i en plantecelle, 30 hvilken fremgangsmåde omfatter: indføring af et eller flere polynukleotider ifølge krav 4 i plantecellerne og ekspression af ZFN'en eller ZFN'erne i cellen, hvor ZFN'erne spalter et eller fbra PPQDQ.nonar 2
7. Donorvektor, som omfatter en første og en anden DNA-sekvens; hvor den første sekvens er homolog med en tredje sekvens, og den anden sekvens er homolog med en fjerde sekvens; og hvor den tredje og den fjerde sekvens er 5 kromosomale EPSPS-DNA-sekvenser, og endvidere hvor de nære kanter af den tredje og den fjerde sekvens er sammenhængende eller adskilt af mindst 1 nukleotidpar, og eventuelt hvor vektoren endvidere omfatter en femte sekvens, hvor den femte sekvens: (a) er indskudt mellem den første og den anden sekvens og 10 (b) er en eksogen nukleinsyresekvens, og hvor de homologe sekvenser udviser 80-100% sekvensidentitet med hinanden, og hvor de kromosomale EPSPS-DNA-sekvenser tilhører et EPSPS-gen, som omfatter en nukleotidsekvens valgt fra gruppen bestående af SEQ ID NO: 10-14 15 eller en sekvens, som udviser mindst ca. 80-100% sekvensidentitet dermed.
8. Vektor ifølge krav 7, hvor den femte sekvens omfatter sekvenser, som koder for en selekterbar markør valgt fra gruppen bestående af grøntfluorescerende protein (GFP), β-glucuronidase (GUS), phosphinothricin-N- 20 acetyltransferase (PAT, BAR), neomycinphosphotransferase, hygromycinphosphotransferase, β-lactamase, catecholdioxygenase, a-amylase, tyrosinase, β-galactosidase, luciferase, aequorin, EPSP-syntase, nitrilase, acetolactatsyntase (ALS), dihydrofolatreduktase (DHFR), dalapondehalogenase og anthranilatsyntase, eller hvor den femte sekvens omfatter en sekvens, som 25 koder for et protein, der ikke er en selekterbar markør; en eller flere transskriptionsregulatorsekvenser; en eller flere proteinmålsøgningssekvenser, der øger eller mindsker proteintransport; et lille interfererende RNA, der er målrettet mod et gen, som skal represseres; og et mikro-RNA, der er målrettet mod et gen, som skal represseres. 30
9. Vektor ifølge et hvilket som helst af kravene 7 eller 8, hvor den femte sekvens omfatter en sekvens, som koder for en muteret kromosomal EPSPS- οδΙ/\/δπο Har mr%c^r nhntae tnlaranra nv/ar ir\r h^rhir^iH^t nl\/nhnoot 3
10. Fremgangsmåde til indføring af en eksogen nukleinsyresekvens i en plantecelles genom, hvilken fremgangsmåde omfatter følgende trin: ekspression af en eller flere zinkfingernukleaser (ZFN'er) ud fra et polynukleotid 5 ifølge krav 4 i cellen i nærværelse af en donorvektor ifølge et hvilket som helst af kravene 7-9; hvor ZFN'en eller ZFN'erne spalter et EPSPS-gen i kromosomalt DNA inden for 3 kilobasepar fra enten den tredje eller den fjerde sekvens; således at spaltning af det kromosomale DNA i trin (b) stimulerer til 10 inkorporering af donorvektoren i genomet ved hjælp af homolog rekombination.
11. Fremgangsmåde til ekspression af produktet af et eksogent nukleinsyresekvensmolekyle i en plantecelle, hvilken fremgangsmåde omfatter følgende trin: 15 indføring af det eksogene sekvensmolekyle i henhold til fremgangsmåden ifølge krav 10, således at produktet af det eksogene sekvensmolekyle udtrykkes i plantecellen.
12. Transgen plantecelle eller transgen plante, som er opnået ved 20 fremgangsmåden ifølge krav 10 eller 11.
13. Fremgangsmåde til stimulering til intramolekylær homolog rekombination i en plantecelles genom, hvilken fremgangsmåde omfatter følgende trin: indføring af en ZFN ifølge krav 3 eller et polynukleotid ifølge krav 4 i 25 plantecellen i nærværelse af et DNA-segment, som omfatter et EPSPS-gen og en første sekvens, der er homolog med en anden sekvens i plantecellen, således at ZFN'en spalter DNA-segmentet og stimulerer til intramolekylær homolog rekombination, hvor homolog rekombination resulterer i en addition, deletion eller substitution af sekvenser i det endogene DNA-segment. 30
14. Fremgangsmåde ifølge krav 13, hvor de deleterede sekvenser er valgt fra gruppen bestående af sekvenser, som koder for et EPSPS-gen i sin helhed 4 eller en del deraf, og sekvenser, som koder for en selekterbar markør i sin helhed eller en del deraf.
15. Fremgangsmåde ifølge krav 13 eller 14, hvor det deleterede DNA 5 substitueres med en eksogen sekvens, hvilken fremgangsmåde endvidere omfatter: indføring af et polynukleotid i cellen, hvor polynukleotidet omfatter: (a) en fjerde og en femte sekvens, hvor den tjerde sekvens er homolog med ikke-deleterede sekvenser i nærheden af den første sekvens, og den femte 10 sekvens er homolog med ikke-deleterede sekvenser i nærheden af den anden sekvens; og (b) den eksogene sekvens.
16. Fremgangsmåde ifølge krav 15, hvor den eksogene sekvens, som indføres 15 ved homolog rekombination, omfatter en muteret kromosomal EPSPS-sekvens, der øger en plantes tolerance over for herbicidet glyphosat.
17. Fremgangsmåde til deletion af en EPSPS-gensekvens fra en plantecelles genom, hvilken fremgangsmåde omfatter: 20 ekspression af en første og en anden zinkfingernuklease (ZFN) ifølge krav 3 eller et polynukleotid ifølge krav 4 i cellen, hvor den første ZFN spalter ved et første spaltningssted i et EPSPS-gen, og den anden ZFN spalter ved et andet spaltningssted i EPSPS-genet, hvor EPSPS-gensekvensen er placeret mellem det første spaltningssted og det andet spaltningssted, hvor spaltning af det 25 første og det andet spaltningssted resulterer i deletion af EPSPS-gensekvensen, hvor EPSPS-gensekvensen deleteres ved ikke-homolog endeforbindelse af det første og det andet spaltningssted.
18. Fremgangsmåde ifølge krav 17, hvor plantecellen er en transgen 30 plantecelle, som omfatter en eksogen EPSPS-sekvens.
19. Fremgangsmåde til modulering af ekspressionen af et EPSPS-gen, hvilken framrionnomårla AmfaHar· 5 ekspression af et ZFP i cellen, hvilket ZFP er som defineret i krav 1 eller 2, hvor ZFP'et binder sig til et målsted i EPSPS-genet, og hvor ekspressionen af EPSPS-genet derved moduleres.
20. Fremgangsmåde ifølge krav 19, hvor ZFP'et øger eller mindsker transskriptionen af EPSPS-genet, eller hvor ZFP'et øger eller mindsker en plantes tolerance over for herbicidet glyphosat.
DK08833882.7T 2007-09-27 2008-09-25 Modificerede zinkfingerproteiner, som er målrettet mod 5-enolpyruvylshikimat-3-phosphat-syntasegener DK2205749T3 (da)

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