CA3024184A1 - Variants of a dna polymerase of the polx family - Google Patents

Variants of a dna polymerase of the polx family Download PDF

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Publication number
CA3024184A1
CA3024184A1 CA3024184A CA3024184A CA3024184A1 CA 3024184 A1 CA3024184 A1 CA 3024184A1 CA 3024184 A CA3024184 A CA 3024184A CA 3024184 A CA3024184 A CA 3024184A CA 3024184 A1 CA3024184 A1 CA 3024184A1
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CA
Canada
Prior art keywords
variant
residue
dna polymerase
seq
nucleic acid
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
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CA3024184A
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English (en)
French (fr)
Inventor
Thomas YBERT
Marc Delarue
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Centre National de la Recherche Scientifique
DNA Script SAS
Institut Pasteur
Original Assignee
Centre National de la Recherche Scientifique
DNA Script SAS
Institut Pasteur
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Application filed by Centre National de la Recherche Scientifique, DNA Script SAS, Institut Pasteur filed Critical Centre National de la Recherche Scientifique
Publication of CA3024184A1 publication Critical patent/CA3024184A1/en
Pending legal-status Critical Current

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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/70—Vectors or expression systems specially adapted for E. coli
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/10—Transferases (2.)
    • C12N9/12—Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
    • C12N9/1241—Nucleotidyltransferases (2.7.7)
    • C12N9/1252—DNA-directed DNA polymerase (2.7.7.7), i.e. DNA replicase
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/10—Transferases (2.)
    • C12N9/12—Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
    • C12N9/1241—Nucleotidyltransferases (2.7.7)
    • C12N9/1264—DNA nucleotidylexotransferase (2.7.7.31), i.e. terminal nucleotidyl transferase
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P19/00—Preparation of compounds containing saccharide radicals
    • C12P19/26—Preparation of nitrogen-containing carbohydrates
    • C12P19/28—N-glycosides
    • C12P19/30—Nucleotides
    • C12P19/34—Polynucleotides, e.g. nucleic acids, oligoribonucleotides
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Y—ENZYMES
    • C12Y207/00—Transferases transferring phosphorus-containing groups (2.7)
    • C12Y207/07—Nucleotidyltransferases (2.7.7)
    • C12Y207/07031—DNA nucleotidylexotransferase (2.7.7.31), i.e. terminal deoxynucleotidyl transferase

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  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Genetics & Genomics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Molecular Biology (AREA)
  • General Engineering & Computer Science (AREA)
  • Biochemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Biotechnology (AREA)
  • Microbiology (AREA)
  • Biomedical Technology (AREA)
  • Medicinal Chemistry (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • General Chemical & Material Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Biophysics (AREA)
  • Plant Pathology (AREA)
  • Enzymes And Modification Thereof (AREA)
  • Micro-Organisms Or Cultivation Processes Thereof (AREA)
  • Preparation Of Compounds By Using Micro-Organisms (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
CA3024184A 2016-06-14 2017-06-13 Variants of a dna polymerase of the polx family Pending CA3024184A1 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
FR1655475 2016-06-14
FR1655475A FR3052462A1 (fr) 2016-06-14 2016-06-14 Variants d'une adn polymerase de la famille polx
PCT/FR2017/051519 WO2017216472A2 (fr) 2016-06-14 2017-06-13 Variants d'une adn polymérase de la famille polx

Publications (1)

Publication Number Publication Date
CA3024184A1 true CA3024184A1 (en) 2017-12-21

Family

ID=57348782

Family Applications (1)

Application Number Title Priority Date Filing Date
CA3024184A Pending CA3024184A1 (en) 2016-06-14 2017-06-13 Variants of a dna polymerase of the polx family

Country Status (11)

Country Link
US (3) US20200002690A1 (enExample)
EP (1) EP3469075A2 (enExample)
JP (2) JP7118510B2 (enExample)
KR (1) KR102522263B1 (enExample)
CN (1) CN109477080A (enExample)
AU (2) AU2017286477C1 (enExample)
CA (1) CA3024184A1 (enExample)
FR (2) FR3052462A1 (enExample)
IL (1) IL263503B2 (enExample)
SG (2) SG11201809961TA (enExample)
WO (1) WO2017216472A2 (enExample)

Cited By (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2020099451A1 (en) * 2018-11-14 2020-05-22 Dna Script Terminal deoxynucleotidyl transferase variants and uses thereof
WO2021116270A1 (en) * 2019-12-12 2021-06-17 Dna Script Chimeric terminal deoxynucleotidyl transferases for template-free enzymatic synthesis of polynucleotides
JP2022513371A (ja) * 2018-10-19 2022-02-07 モレキュラー アッセンブリーズ, インコーポレイテッド ポリデオキシヌクレオチド合成のための改変テンプレート非依存性酵素
JP2023528477A (ja) * 2020-06-03 2023-07-04 モレキュラー アッセンブリーズ, インコーポレイテッド ポリデオキシヌクレオチド合成のための改変された鋳型非依存的酵素
EP4653525A1 (en) * 2024-05-21 2025-11-26 Uab "Biomatter Designs" Engineered terminal deoxynucleotidyl transferase polymerases

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CA3064820A1 (en) * 2017-05-26 2018-11-29 Nuclera Nucleics Ltd Use of terminal transferase enzyme in nucleic acid synthesis
WO2019030149A1 (en) 2017-08-07 2019-02-14 Dna Script VARIANTS OF FAMILY A DNA POLYMERASE AND USES THEREOF
WO2019135007A1 (en) * 2018-01-08 2019-07-11 Dna Script Variants of terminal deoxynucleotidyl transferase and uses thereof
US10752887B2 (en) 2018-01-08 2020-08-25 Dna Script Variants of terminal deoxynucleotidyl transferase and uses thereof
JP7430701B2 (ja) 2018-07-23 2024-02-13 ディーエヌエー スクリプト 核酸鎖の大規模並列酵素合成
SG11202105441WA (en) 2018-12-13 2021-06-29 Dna Script Direct oligonucleotide synthesis on cells and biomolecules
US12428668B2 (en) 2019-01-03 2025-09-30 Dna Script One pot synthesis of sets of oligonucleotides
WO2020146425A1 (en) 2019-01-07 2020-07-16 Elegen Corporation Methods of using microfluidic positional encoding devices
GB201901501D0 (en) * 2019-02-04 2019-03-27 Nuclera Nucleics Ltd Modified terminal deoxynucleotidyl transferase (TdT) enzymes
WO2020165137A1 (en) 2019-02-12 2020-08-20 Dna Script Efficient product cleavage in template-free enzymatic synthesis of polynucleotides.
CN114207140A (zh) * 2019-05-28 2022-03-18 Dna斯克瑞普特公司 末端脱氧核苷酸转移酶变体及其用途
EP3744854A1 (en) * 2019-05-28 2020-12-02 DNA Script Variants of terminal deoxynucleotidyl transferase and uses thereof
WO2021018919A1 (en) 2019-07-30 2021-02-04 Dna Script Template-free enzymatic synthesis of polynucleotides using poly(a) and poly(u) polymerases
CN114430778B (zh) 2019-08-01 2024-07-05 Dna斯克瑞普特公司 增加多核苷酸的无模板酶促合成中长序列的产量
CN110331136B (zh) * 2019-09-05 2019-12-24 中国科学院天津工业生物技术研究所 一种末端脱氧核糖核苷转移酶变体及其应用
US20220315970A1 (en) 2019-09-09 2022-10-06 Dna Script Template-Free Enzymatic Polynucleotide Synthesis Using Photocleavable Linkages
JP2022549196A (ja) 2019-09-23 2022-11-24 ディーエヌエー スクリプト ポリヌクレオチドの鋳型なし酵素的合成における長配列収率の増加
US20220411840A1 (en) 2019-11-13 2022-12-29 Dna Script High Efficiency Template-Free Enzymatic Synthesis of Polynucleotides
EP4077703A1 (en) 2019-12-16 2022-10-26 DNA Script Template-free enzymatic polynucleotide synthesis using dismutationless terminal deoxynucleotidyl transferase variants
EP4110940B1 (en) 2020-02-25 2024-03-27 DNA Script Method and apparatus for enzymatic synthesis of polynucleotides
KR20230002825A (ko) 2020-04-20 2023-01-05 디엔에이 스크립트 말단 데옥시뉴클레오티딜 트랜스퍼라제 변이체 및 그의 용도
US12209266B2 (en) 2020-05-12 2025-01-28 Illumina, Inc. Generating nucleic acids with modified bases using recombinant terminal deoxynucleotidyl transferase
JP7828081B2 (ja) * 2020-05-12 2026-03-11 ナショナル ユニヴァーシティー オブ シンガポール 熱安定性末端デオキシヌクレオチジルトランスフェラーゼ
WO2021250265A2 (en) 2020-06-12 2021-12-16 Synhelix Ab-initio, template-independent synthesis of nucleic acids using thermostable enzymes
ES3070893T3 (en) 2020-06-16 2026-06-18 Dna Script Method for enzymatic polynucleotide synthesis
EP4182472A1 (en) 2020-07-15 2023-05-24 DNA Script Massively parallel enzymatic synthesis of polynucleotides
WO2022019836A1 (en) 2020-07-21 2022-01-27 Illumina Singapore Pte Ltd Base-modified nucleotides as substrates for tdt-based enzymatic nucleic acid
US20230357730A1 (en) * 2020-08-04 2023-11-09 Nuclera Ltd Modified Terminal Deoxynucleotidyl Transferase (TdT) Enzymes
GB2598152B (en) 2020-08-21 2025-04-16 Nuclera Ltd Modified terminal deoxynucleotidyl transferase (TdT) enzymes
AU2021347452A1 (en) 2020-09-22 2023-04-27 Dna Script Stabilized n-terminally truncated terminal deoxynucleotidyl transferase variants and uses thereof
US20240052391A1 (en) 2020-10-29 2024-02-15 Dna Script Enzymatic Synthesis of Polynucleotide Probes
US12391970B2 (en) 2020-11-11 2025-08-19 Microsoft Technology Licensing, Llc Spatial control of polynucleotide synthesis by strand capping
CN112322715B (zh) * 2020-11-17 2022-11-25 清华大学 一种核酸测序方法
AU2022249826A1 (en) 2021-04-02 2023-09-21 Dna Script Methods and kits for enzymatic synthesis of g4-prone polynucleotides
DE102022114351A1 (de) 2021-06-10 2022-12-15 Dna Script Enzymatische synthese von polynukleotiden mittels 3'-o-amino-2'-deoxyribonukleosid triphosphat monomeren
US20240352443A1 (en) 2021-08-23 2024-10-24 Dna Script Method for generating double-stranded nucleic acid
EP4395933A1 (en) 2021-09-03 2024-07-10 Elegen Corporation Multi-way bead-sorting devices, systems, and methods of use thereof using pressure sources
WO2023069865A1 (en) 2021-10-15 2023-04-27 Codexis, Inc. Engineered terminal deoxynucleotidyl transferase variants
CA3236657A1 (en) 2021-11-10 2023-05-19 Daniel MCHALE Novel terminal deoxynucleotidyl transferase (tdt) variant and uses thereof
EP4430176A2 (en) 2021-11-10 2024-09-18 DNA Script Novel terminal deoxynucleotidyl transferase (tdt) variants
CN116555216A (zh) * 2022-01-28 2023-08-08 中国科学院天津工业生物技术研究所 可控合成单链dna的末端转移酶变体及应用
WO2023170259A1 (en) 2022-03-11 2023-09-14 Dna Script Modular accessory rack
WO2023170266A1 (en) 2022-03-11 2023-09-14 Dna Script Automation station for enzymatic polynucleotide synthesis
WO2023170286A2 (en) 2022-03-11 2023-09-14 Dna Script Alignment post and secure mechanism for enzymatic polynucleotide synthesis
WO2023170258A1 (en) 2022-03-11 2023-09-14 Dna Script Apparatus for enzymatic synthesis of a plurality of polynucleotides comprising a condensation trap
WO2023240202A2 (en) * 2022-06-08 2023-12-14 Ansa Biotechnologies, Inc. Modified terminal deoxynucleotidyl transferase polymerases
WO2024013278A1 (en) 2022-07-13 2024-01-18 Dna Script Method of purifying solution comprising polynucleotide
WO2024121022A1 (en) 2022-12-05 2024-06-13 Dna Script Variants of poly(a) polymerase and uses thereof
WO2024121360A1 (en) 2022-12-09 2024-06-13 Dna Script In vitro enzymatical rna synthesis
CN120603956A (zh) 2022-12-31 2025-09-05 Dna斯克瑞普特公司 用于酶试剂的喷墨递送的可变粘度油墨
WO2024153642A1 (en) 2023-01-16 2024-07-25 Dna Script Scarless template-free enzymatic synthesis of polynucleotides
CN121195075A (zh) 2023-01-16 2025-12-23 Dna斯克瑞普特公司 喷墨辅助的酶促核酸合成
EP4655411A2 (en) 2023-01-26 2025-12-03 DNA Script Enzymatic synthesis of polynucleotide probes
JP2026516019A (ja) 2023-05-03 2026-05-19 デエヌア・スクリプト 3’-o-アミノポリヌクレオチドの脱保護に使用する試薬
WO2024241324A1 (en) * 2023-05-24 2024-11-28 Scintium Ltd Method for training an artificial intelligence (ai) model and generating a 3d computer-aided design (cad) and system therefor
WO2024256604A1 (en) 2023-06-15 2024-12-19 Dna Script Salt addition during enzymatic polynucleotide synthesis
WO2025003434A1 (en) 2023-06-30 2025-01-02 Dna Script Nucleic acid synthesis on reusable support
EP4750906A1 (en) 2023-07-27 2026-06-03 DNA Script Method for generating a plurality of polynucleotides
WO2025088024A1 (en) 2023-10-24 2025-05-01 Dna Script Novel terminal deoxynucleotidyl transferase (tdt) variants and uses thereof
WO2025093659A1 (en) 2023-11-04 2025-05-08 Dna Script 3'-o-aminooxymethyl blocked nucleotides and use thereof in enzymatic synthesis of polynucleotides
CN122396768A (zh) * 2023-12-26 2026-07-14 华大工程生物学长荡湖研究所 一种末端脱氧核糖核苷转移酶突变体及其制备方法和应用
WO2025155239A1 (en) * 2024-01-17 2025-07-24 Agency For Science, Technology And Research X family dna polymerases and uses thereof
WO2026008711A2 (en) 2024-07-02 2026-01-08 Dna Script Filtering device and method for polynucleotide enzymatic synthesis
WO2026008717A2 (en) 2024-07-02 2026-01-08 Dna Script Method for enzymatic synthesis of polynucleotides
WO2026017834A1 (en) 2024-07-19 2026-01-22 Dna Script Inkjet-assisted enzymatic nucleic acid synthesis and cleavage

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Cited By (11)

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JP2022513371A (ja) * 2018-10-19 2022-02-07 モレキュラー アッセンブリーズ, インコーポレイテッド ポリデオキシヌクレオチド合成のための改変テンプレート非依存性酵素
EP3867361A4 (en) * 2018-10-19 2022-07-27 Molecular Assemblies, Inc. MODIFIED TEMPLATE-INDEPENDENT ENZYMES FOR POLYDEOXYNUCLEOTIDE SYNTHESIS
WO2020099451A1 (en) * 2018-11-14 2020-05-22 Dna Script Terminal deoxynucleotidyl transferase variants and uses thereof
CN113302289A (zh) * 2018-11-14 2021-08-24 Dna斯克瑞普特公司 末端脱氧核苷酸转移酶变体及其用途
US11859217B2 (en) 2018-11-14 2024-01-02 Dna Script Terminal deoxynucleotidyl transferase variants and uses thereof
US12371680B2 (en) 2018-11-14 2025-07-29 Dna Script Sas Terminal deoxynucleotidyl transferase variants and uses thereof
WO2021116270A1 (en) * 2019-12-12 2021-06-17 Dna Script Chimeric terminal deoxynucleotidyl transferases for template-free enzymatic synthesis of polynucleotides
EP4722376A3 (en) * 2019-12-12 2026-06-10 DNA Script Chimeric terminal deoxynucleotidyl transferases for template-free enzymatic synthesis of polynucleotides
JP2023528477A (ja) * 2020-06-03 2023-07-04 モレキュラー アッセンブリーズ, インコーポレイテッド ポリデオキシヌクレオチド合成のための改変された鋳型非依存的酵素
EP4653525A1 (en) * 2024-05-21 2025-11-26 Uab "Biomatter Designs" Engineered terminal deoxynucleotidyl transferase polymerases
WO2025243149A1 (en) * 2024-05-21 2025-11-27 Uab Biomatter Designs Engineered terminal deoxynucleotidyl transferase polymerases

Also Published As

Publication number Publication date
FR3053699A1 (fr) 2018-01-12
AU2017286477C1 (en) 2023-12-21
AU2023282219A1 (en) 2024-01-18
EP3469075A2 (fr) 2019-04-17
WO2017216472A3 (fr) 2018-03-15
US20230167421A1 (en) 2023-06-01
IL263503A (en) 2019-02-03
US20240124855A1 (en) 2024-04-18
WO2017216472A2 (fr) 2017-12-21
SG11201809961TA (en) 2018-12-28
IL263503B1 (en) 2024-12-01
CN109477080A (zh) 2019-03-15
JP7118510B2 (ja) 2022-08-16
AU2017286477B2 (en) 2023-09-14
IL263503B2 (en) 2025-04-01
SG10202009688QA (en) 2020-11-27
KR20190024883A (ko) 2019-03-08
KR102522263B1 (ko) 2023-04-18
FR3053699B1 (fr) 2021-04-02
JP2022137127A (ja) 2022-09-21
JP2019517799A (ja) 2019-06-27
AU2017286477A1 (en) 2018-12-06
US20200002690A1 (en) 2020-01-02
FR3052462A1 (fr) 2017-12-15

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